Multiple sequence alignment - TraesCS3A01G331300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G331300 chr3A 100.000 3941 0 0 1 3941 575873143 575869203 0.000000e+00 7278.0
1 TraesCS3A01G331300 chr3B 92.760 2279 86 26 223 2460 572838513 572836273 0.000000e+00 3221.0
2 TraesCS3A01G331300 chr3B 91.005 1045 75 11 2630 3664 572835958 572834923 0.000000e+00 1391.0
3 TraesCS3A01G331300 chr3B 89.247 279 27 2 3663 3941 572834761 572834486 2.920000e-91 346.0
4 TraesCS3A01G331300 chr3D 91.647 1724 88 32 754 2458 437735203 437733517 0.000000e+00 2335.0
5 TraesCS3A01G331300 chr3D 92.363 969 61 8 2460 3425 437733437 437732479 0.000000e+00 1367.0
6 TraesCS3A01G331300 chr3D 89.165 563 23 11 223 751 437735812 437735254 0.000000e+00 667.0
7 TraesCS3A01G331300 chr3D 84.151 530 50 11 3421 3941 437702210 437701706 2.130000e-132 483.0
8 TraesCS3A01G331300 chr3D 83.645 214 33 2 3558 3770 182353218 182353006 2.400000e-47 200.0
9 TraesCS3A01G331300 chr3D 83.645 214 33 2 3558 3770 182358681 182358469 2.400000e-47 200.0
10 TraesCS3A01G331300 chr7B 87.918 538 48 12 1000 1530 621294452 621294979 5.600000e-173 617.0
11 TraesCS3A01G331300 chr7B 86.466 532 52 11 1000 1530 621404352 621403840 2.060000e-157 566.0
12 TraesCS3A01G331300 chr7B 84.962 532 51 17 1000 1530 586715683 586716186 2.720000e-141 512.0
13 TraesCS3A01G331300 chr7B 92.265 181 14 0 1350 1530 586704363 586704543 1.410000e-64 257.0
14 TraesCS3A01G331300 chr7B 85.593 118 15 1 2661 2778 621300384 621300499 5.350000e-24 122.0
15 TraesCS3A01G331300 chr7B 82.500 80 9 4 3322 3400 125140624 125140699 9.140000e-07 65.8
16 TraesCS3A01G331300 chr7A 86.038 530 54 10 1003 1531 654110759 654110249 5.760000e-153 551.0
17 TraesCS3A01G331300 chr7D 85.526 532 51 17 1000 1530 567515214 567514708 2.080000e-147 532.0
18 TraesCS3A01G331300 chr7D 84.112 214 32 2 3558 3770 63914214 63914002 5.160000e-49 206.0
19 TraesCS3A01G331300 chr5A 95.429 175 7 1 1 175 493768044 493767871 1.080000e-70 278.0
20 TraesCS3A01G331300 chr6D 79.630 324 53 11 3558 3875 426840920 426841236 1.840000e-53 220.0
21 TraesCS3A01G331300 chr6D 83.721 215 31 4 3558 3770 12608449 12608237 2.400000e-47 200.0
22 TraesCS3A01G331300 chr2D 84.112 214 32 2 3558 3770 615952308 615952520 5.160000e-49 206.0
23 TraesCS3A01G331300 chr1B 85.235 149 21 1 2 150 550013126 550013273 6.820000e-33 152.0
24 TraesCS3A01G331300 chr2A 96.970 33 0 1 1836 1868 15530325 15530294 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G331300 chr3A 575869203 575873143 3940 True 7278.000000 7278 100.000000 1 3941 1 chr3A.!!$R1 3940
1 TraesCS3A01G331300 chr3B 572834486 572838513 4027 True 1652.666667 3221 91.004000 223 3941 3 chr3B.!!$R1 3718
2 TraesCS3A01G331300 chr3D 437732479 437735812 3333 True 1456.333333 2335 91.058333 223 3425 3 chr3D.!!$R4 3202
3 TraesCS3A01G331300 chr3D 437701706 437702210 504 True 483.000000 483 84.151000 3421 3941 1 chr3D.!!$R3 520
4 TraesCS3A01G331300 chr7B 621294452 621294979 527 False 617.000000 617 87.918000 1000 1530 1 chr7B.!!$F4 530
5 TraesCS3A01G331300 chr7B 621403840 621404352 512 True 566.000000 566 86.466000 1000 1530 1 chr7B.!!$R1 530
6 TraesCS3A01G331300 chr7B 586715683 586716186 503 False 512.000000 512 84.962000 1000 1530 1 chr7B.!!$F3 530
7 TraesCS3A01G331300 chr7A 654110249 654110759 510 True 551.000000 551 86.038000 1003 1531 1 chr7A.!!$R1 528
8 TraesCS3A01G331300 chr7D 567514708 567515214 506 True 532.000000 532 85.526000 1000 1530 1 chr7D.!!$R2 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 221 0.032952 TATGCGGCCGTTGGAGATAC 59.967 55.0 28.70 6.86 0.00 2.24 F
962 1055 0.317938 GTTCCTGATCGATCGGTCCG 60.318 60.0 28.08 18.54 0.00 4.79 F
2342 2461 0.716108 CTACGTTTCTTGAGCGGCTG 59.284 55.0 7.50 0.00 36.17 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2168 0.037326 TCGTCTGGATGGTGAACAGC 60.037 55.0 0.00 0.00 33.87 4.40 R
2504 2701 0.095417 CTCAGCTCGCGGTAAAAAGC 59.905 55.0 6.13 6.70 34.95 3.51 R
3688 4179 0.028110 TGAGATCGTGATCGCGACAG 59.972 55.0 31.68 2.91 43.99 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.065306 TGTGGACATGACCCGGTC 58.935 61.111 10.96 10.96 0.00 4.79
18 19 1.839296 TGTGGACATGACCCGGTCA 60.839 57.895 22.58 22.58 46.90 4.02
19 20 1.373435 GTGGACATGACCCGGTCAA 59.627 57.895 24.04 4.51 45.96 3.18
20 21 0.250553 GTGGACATGACCCGGTCAAA 60.251 55.000 24.04 1.86 45.96 2.69
21 22 0.474614 TGGACATGACCCGGTCAAAA 59.525 50.000 24.04 1.06 45.96 2.44
22 23 0.879090 GGACATGACCCGGTCAAAAC 59.121 55.000 24.04 16.16 45.96 2.43
23 24 0.879090 GACATGACCCGGTCAAAACC 59.121 55.000 24.04 10.02 45.96 3.27
24 25 0.183971 ACATGACCCGGTCAAAACCA 59.816 50.000 24.04 0.19 45.96 3.67
25 26 1.203001 ACATGACCCGGTCAAAACCAT 60.203 47.619 24.04 3.73 45.96 3.55
26 27 1.202114 CATGACCCGGTCAAAACCATG 59.798 52.381 24.04 12.66 45.96 3.66
27 28 1.175983 TGACCCGGTCAAAACCATGC 61.176 55.000 18.34 0.00 46.86 4.06
28 29 0.893727 GACCCGGTCAAAACCATGCT 60.894 55.000 13.05 0.00 46.86 3.79
29 30 1.178534 ACCCGGTCAAAACCATGCTG 61.179 55.000 0.00 0.00 46.86 4.41
30 31 1.586028 CCGGTCAAAACCATGCTGG 59.414 57.895 0.00 1.16 46.86 4.85
31 32 1.586028 CGGTCAAAACCATGCTGGG 59.414 57.895 7.06 0.29 46.86 4.45
32 33 1.178534 CGGTCAAAACCATGCTGGGT 61.179 55.000 7.06 0.91 46.86 4.51
47 48 2.498167 CTGGGTTAGCATGGATACTGC 58.502 52.381 0.00 0.00 39.89 4.40
49 50 2.509548 TGGGTTAGCATGGATACTGCTT 59.490 45.455 7.12 0.00 44.94 3.91
50 51 3.142174 GGGTTAGCATGGATACTGCTTC 58.858 50.000 7.12 2.82 44.94 3.86
51 52 3.433598 GGGTTAGCATGGATACTGCTTCA 60.434 47.826 7.12 0.00 44.94 3.02
52 53 3.812053 GGTTAGCATGGATACTGCTTCAG 59.188 47.826 7.12 0.00 44.94 3.02
53 54 4.446371 GTTAGCATGGATACTGCTTCAGT 58.554 43.478 7.12 4.78 44.94 3.41
54 55 3.641434 AGCATGGATACTGCTTCAGTT 57.359 42.857 4.70 0.00 42.59 3.16
55 56 3.276857 AGCATGGATACTGCTTCAGTTG 58.723 45.455 4.70 0.00 42.59 3.16
56 57 3.054875 AGCATGGATACTGCTTCAGTTGA 60.055 43.478 4.70 0.00 42.59 3.18
57 58 3.311871 GCATGGATACTGCTTCAGTTGAG 59.688 47.826 4.70 0.00 42.59 3.02
58 59 2.977914 TGGATACTGCTTCAGTTGAGC 58.022 47.619 4.70 0.00 42.59 4.26
59 60 2.284190 GGATACTGCTTCAGTTGAGCC 58.716 52.381 4.70 0.00 42.59 4.70
60 61 1.929836 GATACTGCTTCAGTTGAGCCG 59.070 52.381 4.70 0.00 42.59 5.52
61 62 0.037326 TACTGCTTCAGTTGAGCCGG 60.037 55.000 4.70 0.00 42.59 6.13
62 63 2.032528 TGCTTCAGTTGAGCCGGG 59.967 61.111 2.18 0.00 0.00 5.73
63 64 2.747855 GCTTCAGTTGAGCCGGGG 60.748 66.667 2.18 0.00 0.00 5.73
64 65 2.045926 CTTCAGTTGAGCCGGGGG 60.046 66.667 2.18 0.00 0.00 5.40
65 66 2.528127 TTCAGTTGAGCCGGGGGA 60.528 61.111 2.18 0.00 0.00 4.81
66 67 1.915078 CTTCAGTTGAGCCGGGGGAT 61.915 60.000 2.18 0.00 0.00 3.85
67 68 2.124570 CAGTTGAGCCGGGGGATG 60.125 66.667 2.18 0.00 0.00 3.51
68 69 2.285368 AGTTGAGCCGGGGGATGA 60.285 61.111 2.18 0.00 0.00 2.92
69 70 1.923395 AGTTGAGCCGGGGGATGAA 60.923 57.895 2.18 0.00 0.00 2.57
70 71 1.001393 GTTGAGCCGGGGGATGAAA 60.001 57.895 2.18 0.00 0.00 2.69
71 72 1.001393 TTGAGCCGGGGGATGAAAC 60.001 57.895 2.18 0.00 0.00 2.78
72 73 1.497309 TTGAGCCGGGGGATGAAACT 61.497 55.000 2.18 0.00 0.00 2.66
73 74 1.303282 GAGCCGGGGGATGAAACTT 59.697 57.895 2.18 0.00 0.00 2.66
74 75 0.544697 GAGCCGGGGGATGAAACTTA 59.455 55.000 2.18 0.00 0.00 2.24
75 76 1.143073 GAGCCGGGGGATGAAACTTAT 59.857 52.381 2.18 0.00 0.00 1.73
76 77 1.143073 AGCCGGGGGATGAAACTTATC 59.857 52.381 2.18 0.00 0.00 1.75
77 78 1.818131 GCCGGGGGATGAAACTTATCC 60.818 57.143 2.18 0.00 42.73 2.59
78 79 1.542547 CCGGGGGATGAAACTTATCCG 60.543 57.143 0.00 0.00 44.08 4.18
79 80 1.414919 CGGGGGATGAAACTTATCCGA 59.585 52.381 0.00 0.00 44.08 4.55
80 81 2.038557 CGGGGGATGAAACTTATCCGAT 59.961 50.000 0.00 0.00 44.08 4.18
81 82 3.496160 CGGGGGATGAAACTTATCCGATT 60.496 47.826 0.00 0.00 44.08 3.34
82 83 4.470602 GGGGGATGAAACTTATCCGATTT 58.529 43.478 0.00 0.00 44.08 2.17
83 84 4.519350 GGGGGATGAAACTTATCCGATTTC 59.481 45.833 0.00 0.00 44.08 2.17
84 85 5.130350 GGGGATGAAACTTATCCGATTTCA 58.870 41.667 1.49 1.49 44.08 2.69
85 86 5.592688 GGGGATGAAACTTATCCGATTTCAA 59.407 40.000 3.03 0.00 43.50 2.69
86 87 6.238759 GGGGATGAAACTTATCCGATTTCAAG 60.239 42.308 3.03 0.00 43.50 3.02
87 88 6.542370 GGGATGAAACTTATCCGATTTCAAGA 59.458 38.462 3.03 0.00 43.50 3.02
88 89 7.254932 GGGATGAAACTTATCCGATTTCAAGAG 60.255 40.741 3.03 0.00 43.50 2.85
89 90 7.281100 GGATGAAACTTATCCGATTTCAAGAGT 59.719 37.037 3.03 0.00 43.50 3.24
90 91 7.979444 TGAAACTTATCCGATTTCAAGAGTT 57.021 32.000 0.00 0.00 38.92 3.01
91 92 8.391075 TGAAACTTATCCGATTTCAAGAGTTT 57.609 30.769 0.00 0.00 38.92 2.66
92 93 8.289618 TGAAACTTATCCGATTTCAAGAGTTTG 58.710 33.333 0.00 0.00 38.92 2.93
93 94 7.979444 AACTTATCCGATTTCAAGAGTTTGA 57.021 32.000 0.00 0.00 41.44 2.69
94 95 7.602517 ACTTATCCGATTTCAAGAGTTTGAG 57.397 36.000 0.00 0.00 43.76 3.02
95 96 6.595716 ACTTATCCGATTTCAAGAGTTTGAGG 59.404 38.462 0.00 0.00 43.76 3.86
96 97 4.351874 TCCGATTTCAAGAGTTTGAGGT 57.648 40.909 0.00 0.00 43.76 3.85
97 98 4.065088 TCCGATTTCAAGAGTTTGAGGTG 58.935 43.478 0.00 0.00 43.76 4.00
98 99 3.365364 CCGATTTCAAGAGTTTGAGGTGC 60.365 47.826 0.00 0.00 43.76 5.01
99 100 3.250762 CGATTTCAAGAGTTTGAGGTGCA 59.749 43.478 0.00 0.00 43.76 4.57
100 101 4.261155 CGATTTCAAGAGTTTGAGGTGCAA 60.261 41.667 0.00 0.00 43.76 4.08
101 102 4.637483 TTTCAAGAGTTTGAGGTGCAAG 57.363 40.909 0.00 0.00 43.76 4.01
102 103 3.281727 TCAAGAGTTTGAGGTGCAAGT 57.718 42.857 0.00 0.00 38.37 3.16
103 104 3.620488 TCAAGAGTTTGAGGTGCAAGTT 58.380 40.909 0.00 0.00 38.37 2.66
104 105 3.378112 TCAAGAGTTTGAGGTGCAAGTTG 59.622 43.478 0.00 0.00 38.37 3.16
105 106 3.004752 AGAGTTTGAGGTGCAAGTTGT 57.995 42.857 4.48 0.00 37.87 3.32
106 107 2.945668 AGAGTTTGAGGTGCAAGTTGTC 59.054 45.455 4.48 0.00 37.87 3.18
107 108 2.945668 GAGTTTGAGGTGCAAGTTGTCT 59.054 45.455 4.48 0.19 37.87 3.41
108 109 2.684881 AGTTTGAGGTGCAAGTTGTCTG 59.315 45.455 4.48 0.00 37.87 3.51
109 110 2.682856 GTTTGAGGTGCAAGTTGTCTGA 59.317 45.455 4.48 0.00 37.87 3.27
110 111 2.936919 TGAGGTGCAAGTTGTCTGAT 57.063 45.000 4.48 0.00 0.00 2.90
111 112 3.213206 TGAGGTGCAAGTTGTCTGATT 57.787 42.857 4.48 0.00 0.00 2.57
112 113 3.554934 TGAGGTGCAAGTTGTCTGATTT 58.445 40.909 4.48 0.00 0.00 2.17
113 114 3.565482 TGAGGTGCAAGTTGTCTGATTTC 59.435 43.478 4.48 0.00 0.00 2.17
114 115 2.549754 AGGTGCAAGTTGTCTGATTTCG 59.450 45.455 4.48 0.00 0.00 3.46
115 116 2.290641 GGTGCAAGTTGTCTGATTTCGT 59.709 45.455 4.48 0.00 0.00 3.85
116 117 3.496884 GGTGCAAGTTGTCTGATTTCGTA 59.503 43.478 4.48 0.00 0.00 3.43
117 118 4.377431 GGTGCAAGTTGTCTGATTTCGTAG 60.377 45.833 4.48 0.00 0.00 3.51
118 119 4.211374 GTGCAAGTTGTCTGATTTCGTAGT 59.789 41.667 4.48 0.00 0.00 2.73
119 120 4.814234 TGCAAGTTGTCTGATTTCGTAGTT 59.186 37.500 4.48 0.00 0.00 2.24
120 121 5.140177 GCAAGTTGTCTGATTTCGTAGTTG 58.860 41.667 4.48 0.00 0.00 3.16
121 122 5.050363 GCAAGTTGTCTGATTTCGTAGTTGA 60.050 40.000 4.48 0.00 0.00 3.18
122 123 6.584954 CAAGTTGTCTGATTTCGTAGTTGAG 58.415 40.000 0.00 0.00 0.00 3.02
123 124 5.230942 AGTTGTCTGATTTCGTAGTTGAGG 58.769 41.667 0.00 0.00 0.00 3.86
124 125 4.188247 TGTCTGATTTCGTAGTTGAGGG 57.812 45.455 0.00 0.00 0.00 4.30
125 126 3.830178 TGTCTGATTTCGTAGTTGAGGGA 59.170 43.478 0.00 0.00 0.00 4.20
126 127 4.174762 GTCTGATTTCGTAGTTGAGGGAC 58.825 47.826 0.00 0.00 0.00 4.46
127 128 3.119602 TCTGATTTCGTAGTTGAGGGACG 60.120 47.826 0.00 0.00 37.93 4.79
128 129 2.821378 TGATTTCGTAGTTGAGGGACGA 59.179 45.455 0.00 0.00 43.38 4.20
132 133 3.498927 TCGTAGTTGAGGGACGAAATC 57.501 47.619 0.00 0.00 42.23 2.17
133 134 3.087031 TCGTAGTTGAGGGACGAAATCT 58.913 45.455 0.00 0.00 42.23 2.40
134 135 4.264253 TCGTAGTTGAGGGACGAAATCTA 58.736 43.478 0.00 0.00 42.23 1.98
135 136 4.334759 TCGTAGTTGAGGGACGAAATCTAG 59.665 45.833 0.00 0.00 42.23 2.43
136 137 4.334759 CGTAGTTGAGGGACGAAATCTAGA 59.665 45.833 0.00 0.00 38.88 2.43
137 138 4.722361 AGTTGAGGGACGAAATCTAGAC 57.278 45.455 0.00 0.00 0.00 2.59
138 139 4.345854 AGTTGAGGGACGAAATCTAGACT 58.654 43.478 0.00 0.00 0.00 3.24
139 140 4.773149 AGTTGAGGGACGAAATCTAGACTT 59.227 41.667 0.00 0.00 0.00 3.01
140 141 4.985538 TGAGGGACGAAATCTAGACTTC 57.014 45.455 3.81 3.81 0.00 3.01
142 143 2.099427 AGGGACGAAATCTAGACTTCGC 59.901 50.000 30.13 22.83 46.46 4.70
143 144 2.461903 GGACGAAATCTAGACTTCGCC 58.538 52.381 30.13 26.49 46.46 5.54
144 145 2.159282 GGACGAAATCTAGACTTCGCCA 60.159 50.000 30.13 0.00 46.46 5.69
145 146 3.508762 GACGAAATCTAGACTTCGCCAA 58.491 45.455 30.13 0.00 46.46 4.52
146 147 3.921677 ACGAAATCTAGACTTCGCCAAA 58.078 40.909 30.13 0.00 46.46 3.28
147 148 4.312443 ACGAAATCTAGACTTCGCCAAAA 58.688 39.130 30.13 0.00 46.46 2.44
148 149 4.389077 ACGAAATCTAGACTTCGCCAAAAG 59.611 41.667 30.13 8.37 46.46 2.27
149 150 4.389077 CGAAATCTAGACTTCGCCAAAAGT 59.611 41.667 21.67 0.00 42.10 2.66
150 151 5.107065 CGAAATCTAGACTTCGCCAAAAGTT 60.107 40.000 21.67 0.00 39.55 2.66
151 152 5.864628 AATCTAGACTTCGCCAAAAGTTC 57.135 39.130 0.00 0.00 39.55 3.01
152 153 4.330944 TCTAGACTTCGCCAAAAGTTCA 57.669 40.909 0.00 0.00 39.55 3.18
153 154 4.307432 TCTAGACTTCGCCAAAAGTTCAG 58.693 43.478 0.00 0.00 39.55 3.02
154 155 2.222027 AGACTTCGCCAAAAGTTCAGG 58.778 47.619 0.00 0.00 39.55 3.86
155 156 1.266989 GACTTCGCCAAAAGTTCAGGG 59.733 52.381 0.00 0.00 39.55 4.45
156 157 1.133915 ACTTCGCCAAAAGTTCAGGGA 60.134 47.619 0.00 0.00 36.02 4.20
157 158 1.266989 CTTCGCCAAAAGTTCAGGGAC 59.733 52.381 0.00 0.00 0.00 4.46
158 159 0.882927 TCGCCAAAAGTTCAGGGACG 60.883 55.000 0.00 0.00 0.00 4.79
159 160 0.882927 CGCCAAAAGTTCAGGGACGA 60.883 55.000 0.00 0.00 0.00 4.20
160 161 1.314730 GCCAAAAGTTCAGGGACGAA 58.685 50.000 0.00 0.00 0.00 3.85
161 162 1.679153 GCCAAAAGTTCAGGGACGAAA 59.321 47.619 0.00 0.00 0.00 3.46
162 163 2.100087 GCCAAAAGTTCAGGGACGAAAA 59.900 45.455 0.00 0.00 0.00 2.29
163 164 3.795488 GCCAAAAGTTCAGGGACGAAAAG 60.795 47.826 0.00 0.00 0.00 2.27
164 165 3.380320 CCAAAAGTTCAGGGACGAAAAGT 59.620 43.478 0.00 0.00 0.00 2.66
165 166 4.577283 CCAAAAGTTCAGGGACGAAAAGTA 59.423 41.667 0.00 0.00 0.00 2.24
166 167 5.240844 CCAAAAGTTCAGGGACGAAAAGTAT 59.759 40.000 0.00 0.00 0.00 2.12
167 168 6.428771 CCAAAAGTTCAGGGACGAAAAGTATA 59.571 38.462 0.00 0.00 0.00 1.47
168 169 7.295930 CAAAAGTTCAGGGACGAAAAGTATAC 58.704 38.462 0.00 0.00 0.00 1.47
169 170 5.997384 AGTTCAGGGACGAAAAGTATACT 57.003 39.130 0.00 0.00 0.00 2.12
170 171 6.356186 AGTTCAGGGACGAAAAGTATACTT 57.644 37.500 12.50 12.50 37.91 2.24
192 193 7.837505 ACTTTTCTTTTACTTTTATTGTGCGC 58.162 30.769 0.00 0.00 0.00 6.09
193 194 6.757026 TTTCTTTTACTTTTATTGTGCGCC 57.243 33.333 4.18 0.00 0.00 6.53
194 195 5.440234 TCTTTTACTTTTATTGTGCGCCA 57.560 34.783 4.18 0.00 0.00 5.69
195 196 5.833082 TCTTTTACTTTTATTGTGCGCCAA 58.167 33.333 4.18 9.54 37.49 4.52
196 197 6.451393 TCTTTTACTTTTATTGTGCGCCAAT 58.549 32.000 22.05 22.05 45.68 3.16
197 198 6.926272 TCTTTTACTTTTATTGTGCGCCAATT 59.074 30.769 23.09 11.61 41.01 2.32
198 199 7.439655 TCTTTTACTTTTATTGTGCGCCAATTT 59.560 29.630 23.09 8.94 41.01 1.82
199 200 7.484035 TTTACTTTTATTGTGCGCCAATTTT 57.516 28.000 23.09 8.36 41.01 1.82
200 201 7.484035 TTACTTTTATTGTGCGCCAATTTTT 57.516 28.000 23.09 8.07 41.01 1.94
215 216 2.642425 TTTTTATGCGGCCGTTGGA 58.358 47.368 28.70 8.98 0.00 3.53
216 217 0.523966 TTTTTATGCGGCCGTTGGAG 59.476 50.000 28.70 0.00 0.00 3.86
217 218 0.321741 TTTTATGCGGCCGTTGGAGA 60.322 50.000 28.70 6.64 0.00 3.71
218 219 0.107410 TTTATGCGGCCGTTGGAGAT 60.107 50.000 28.70 11.50 0.00 2.75
219 220 0.753867 TTATGCGGCCGTTGGAGATA 59.246 50.000 28.70 10.52 0.00 1.98
220 221 0.032952 TATGCGGCCGTTGGAGATAC 59.967 55.000 28.70 6.86 0.00 2.24
221 222 1.686325 ATGCGGCCGTTGGAGATACT 61.686 55.000 28.70 0.00 0.00 2.12
247 248 2.262572 CAGTCGCCCTGCAAATTTAC 57.737 50.000 0.00 0.00 33.59 2.01
297 298 2.438434 CCCATGGAGTTCGGCCAC 60.438 66.667 15.22 0.00 38.44 5.01
326 327 1.741028 TTCCTTCTCCCATGTGACCA 58.259 50.000 0.00 0.00 0.00 4.02
346 347 4.463539 ACCAGAAAATACAGCAATGCATGA 59.536 37.500 8.35 0.00 0.00 3.07
357 358 2.891580 GCAATGCATGATCCTTGGATCT 59.108 45.455 24.74 11.71 33.01 2.75
388 394 2.673368 CGTTCCCTAGCTTGATGAACAC 59.327 50.000 20.92 5.82 36.07 3.32
396 403 4.825546 AGCTTGATGAACACTGTGAAAG 57.174 40.909 15.86 8.74 0.00 2.62
417 434 2.073816 CACGGCGAGAGTAACCAAAAT 58.926 47.619 16.62 0.00 0.00 1.82
474 491 3.587797 TTTAGGCTCTGACAACTACCG 57.412 47.619 0.00 0.00 0.00 4.02
488 505 1.565305 CTACCGCTCGTAGTCGTAGT 58.435 55.000 0.80 0.00 39.82 2.73
505 524 4.577693 TCGTAGTACTACATCACATGACCC 59.422 45.833 28.03 1.72 35.87 4.46
526 545 2.482664 CGTAGCTCATGCCAAGACAGAT 60.483 50.000 0.00 0.00 40.80 2.90
538 557 4.615223 GCCAAGACAGATTCCGGTTTAAAC 60.615 45.833 9.98 9.98 0.00 2.01
628 647 3.117888 ACGATGCCTCAGGTTTCCATTAT 60.118 43.478 0.00 0.00 0.00 1.28
713 756 2.059541 GTTTCTCTCCTCAACGAACGG 58.940 52.381 0.00 0.00 0.00 4.44
912 1003 1.298859 GCTGCACGAAACCGAATCCT 61.299 55.000 0.00 0.00 0.00 3.24
962 1055 0.317938 GTTCCTGATCGATCGGTCCG 60.318 60.000 28.08 18.54 0.00 4.79
1377 1486 3.060866 GTGGTGACCGCCTTCTCT 58.939 61.111 3.20 0.00 0.00 3.10
1671 1780 3.747529 CCCACGAAGTAACCGTAAACATT 59.252 43.478 0.00 0.00 41.61 2.71
1752 1861 2.847234 ACGGTGGCCAAGGAGACA 60.847 61.111 7.24 0.00 0.00 3.41
1756 1865 0.890996 GGTGGCCAAGGAGACAAGTG 60.891 60.000 7.24 0.00 0.00 3.16
1776 1885 4.742201 GACGCGGAGGCAGAGCAA 62.742 66.667 12.47 0.00 39.92 3.91
1872 1981 4.556233 TCAAGATTCCGAATACCTATGCG 58.444 43.478 0.00 0.00 34.50 4.73
1905 2014 1.302832 CATCTGGGCCCTAATCGCC 60.303 63.158 25.70 0.00 46.29 5.54
1931 2040 3.926616 AGTACGTCCCTTTCATTCACAG 58.073 45.455 0.00 0.00 0.00 3.66
1938 2054 4.333926 GTCCCTTTCATTCACAGCTCATAC 59.666 45.833 0.00 0.00 0.00 2.39
1939 2055 3.629398 CCCTTTCATTCACAGCTCATACC 59.371 47.826 0.00 0.00 0.00 2.73
1940 2056 4.521146 CCTTTCATTCACAGCTCATACCT 58.479 43.478 0.00 0.00 0.00 3.08
1942 2058 3.443099 TCATTCACAGCTCATACCTCG 57.557 47.619 0.00 0.00 0.00 4.63
1944 2060 3.951680 TCATTCACAGCTCATACCTCGTA 59.048 43.478 0.00 0.00 0.00 3.43
1945 2061 3.777465 TTCACAGCTCATACCTCGTAC 57.223 47.619 0.00 0.00 0.00 3.67
1946 2062 2.718563 TCACAGCTCATACCTCGTACA 58.281 47.619 0.00 0.00 0.00 2.90
1947 2063 3.288092 TCACAGCTCATACCTCGTACAT 58.712 45.455 0.00 0.00 0.00 2.29
1948 2064 4.457466 TCACAGCTCATACCTCGTACATA 58.543 43.478 0.00 0.00 0.00 2.29
1950 2066 5.535030 TCACAGCTCATACCTCGTACATATT 59.465 40.000 0.00 0.00 0.00 1.28
1952 2068 5.047943 ACAGCTCATACCTCGTACATATTCC 60.048 44.000 0.00 0.00 0.00 3.01
1953 2069 5.184096 CAGCTCATACCTCGTACATATTCCT 59.816 44.000 0.00 0.00 0.00 3.36
1954 2070 5.184096 AGCTCATACCTCGTACATATTCCTG 59.816 44.000 0.00 0.00 0.00 3.86
1955 2071 5.047943 GCTCATACCTCGTACATATTCCTGT 60.048 44.000 0.00 0.00 0.00 4.00
1956 2072 6.327279 TCATACCTCGTACATATTCCTGTG 57.673 41.667 0.00 0.00 0.00 3.66
1957 2073 3.454371 ACCTCGTACATATTCCTGTGC 57.546 47.619 0.00 0.00 0.00 4.57
1958 2074 2.102588 ACCTCGTACATATTCCTGTGCC 59.897 50.000 0.00 0.00 0.00 5.01
1959 2075 2.365617 CCTCGTACATATTCCTGTGCCT 59.634 50.000 0.00 0.00 0.00 4.75
1960 2076 3.572682 CCTCGTACATATTCCTGTGCCTA 59.427 47.826 0.00 0.00 0.00 3.93
1962 2078 5.279506 CCTCGTACATATTCCTGTGCCTATT 60.280 44.000 0.00 0.00 0.00 1.73
1963 2079 6.169557 TCGTACATATTCCTGTGCCTATTT 57.830 37.500 0.00 0.00 0.00 1.40
1964 2080 5.989168 TCGTACATATTCCTGTGCCTATTTG 59.011 40.000 0.00 0.00 0.00 2.32
1966 2082 5.387113 ACATATTCCTGTGCCTATTTGGA 57.613 39.130 0.00 0.00 38.35 3.53
1968 2084 7.090319 ACATATTCCTGTGCCTATTTGGATA 57.910 36.000 0.00 0.00 38.35 2.59
1970 2086 7.831193 ACATATTCCTGTGCCTATTTGGATATC 59.169 37.037 0.00 0.00 38.35 1.63
1972 2088 5.912149 TCCTGTGCCTATTTGGATATCTT 57.088 39.130 2.05 0.00 38.35 2.40
1973 2089 5.869579 TCCTGTGCCTATTTGGATATCTTC 58.130 41.667 2.05 0.00 38.35 2.87
1982 2101 8.325046 GCCTATTTGGATATCTTCTCCTAATGT 58.675 37.037 2.05 0.00 38.26 2.71
2007 2126 4.224433 TCACGTCGATCTACTTGTGTTTC 58.776 43.478 0.00 0.00 0.00 2.78
2008 2127 4.023450 TCACGTCGATCTACTTGTGTTTCT 60.023 41.667 0.00 0.00 0.00 2.52
2009 2128 5.179929 TCACGTCGATCTACTTGTGTTTCTA 59.820 40.000 0.00 0.00 0.00 2.10
2049 2168 4.717991 TGCCAAAAATAATTGACGACTCG 58.282 39.130 0.00 0.00 31.84 4.18
2073 2192 3.771160 ACCATCCAGACGACGGCC 61.771 66.667 0.00 0.00 0.00 6.13
2115 2234 2.202703 GGGACGTTCATAGCGCGT 60.203 61.111 8.43 0.00 41.81 6.01
2291 2410 4.972440 GCACGGCTGATTAATTCTTTCATC 59.028 41.667 0.00 0.00 0.00 2.92
2308 2427 8.206325 TCTTTCATCTATTTCTTGAGATGTGC 57.794 34.615 10.73 0.00 46.14 4.57
2313 2432 1.428448 TTTCTTGAGATGTGCGACGG 58.572 50.000 0.00 0.00 0.00 4.79
2337 2456 6.469275 GGCATTTATTTCTACGTTTCTTGAGC 59.531 38.462 0.00 0.00 0.00 4.26
2342 2461 0.716108 CTACGTTTCTTGAGCGGCTG 59.284 55.000 7.50 0.00 36.17 4.85
2371 2490 1.520494 CTACTAGCTGCCATGCCATG 58.480 55.000 0.00 0.00 0.00 3.66
2458 2577 8.709646 GTCCAGTAGTAGTACAAGTCAAAAATG 58.290 37.037 10.33 0.00 0.00 2.32
2474 2671 4.895668 AAAATGACAAATGCTGACCCAT 57.104 36.364 0.00 0.00 0.00 4.00
2480 2677 4.218200 TGACAAATGCTGACCCATAAAGTG 59.782 41.667 0.00 0.00 0.00 3.16
2500 2697 4.473477 TGGAACGAAACCCACAATTTTT 57.527 36.364 0.00 0.00 0.00 1.94
2504 2701 5.006261 GGAACGAAACCCACAATTTTTGAAG 59.994 40.000 0.00 0.00 0.00 3.02
2516 2713 4.965042 ATTTTTGAAGCTTTTTACCGCG 57.035 36.364 0.00 0.00 0.00 6.46
2517 2714 3.694535 TTTTGAAGCTTTTTACCGCGA 57.305 38.095 8.23 0.00 0.00 5.87
2518 2715 2.961522 TTGAAGCTTTTTACCGCGAG 57.038 45.000 8.23 0.00 0.00 5.03
2519 2716 0.515564 TGAAGCTTTTTACCGCGAGC 59.484 50.000 8.23 7.54 35.42 5.03
2520 2717 0.796927 GAAGCTTTTTACCGCGAGCT 59.203 50.000 8.23 10.27 46.71 4.09
2521 2718 0.517316 AAGCTTTTTACCGCGAGCTG 59.483 50.000 17.11 0.00 44.17 4.24
2704 3022 2.024918 CATGTTCATACAGGCGGCC 58.975 57.895 12.11 12.11 37.77 6.13
2707 3025 1.077716 GTTCATACAGGCGGCCCTT 60.078 57.895 17.02 5.18 40.33 3.95
2844 3162 5.181009 TCTGTGAATGACCATCTGATCAAC 58.819 41.667 0.00 0.00 0.00 3.18
2847 3165 3.943381 TGAATGACCATCTGATCAACTGC 59.057 43.478 0.00 0.00 0.00 4.40
2849 3167 2.703416 TGACCATCTGATCAACTGCAC 58.297 47.619 0.00 0.00 0.00 4.57
2898 3216 8.322091 AGGGTAATTCTTGGGATATTTATCTCG 58.678 37.037 0.00 0.00 35.94 4.04
2964 3282 1.338337 AGCTACCAAGATCGATGTCCG 59.662 52.381 0.54 0.00 40.25 4.79
2997 3315 3.069300 AGCGCATGTCAGATGTAGAAGAT 59.931 43.478 11.47 0.00 0.00 2.40
3020 3338 2.288666 GCCACACAACAGTTGAAGAGA 58.711 47.619 20.56 0.00 0.00 3.10
3045 3363 2.475852 GCTCGATTGCAGCTTGAAGAAG 60.476 50.000 0.00 0.00 33.75 2.85
3139 3457 8.585471 ATGTGGTCAATCAATAGAAAGTTCAT 57.415 30.769 0.00 0.00 0.00 2.57
3181 3500 8.332464 TGATGTAAAGTTAGTTCAAACTTCACG 58.668 33.333 0.00 0.00 46.40 4.35
3197 3516 4.095334 ACTTCACGTTGGACAAAAAGTACC 59.905 41.667 0.00 0.00 0.00 3.34
3209 3528 4.211920 CAAAAAGTACCACCTCCTTTCCA 58.788 43.478 0.00 0.00 0.00 3.53
3234 3553 5.731957 TTATTAGGCCTGCACGTATCATA 57.268 39.130 17.99 0.00 0.00 2.15
3371 3691 7.927048 ACGTTGGTTAAATTATCAATCTAGGC 58.073 34.615 0.00 0.00 0.00 3.93
3414 3734 3.886123 ACCCGGAAAAGATGGAGTATTG 58.114 45.455 0.73 0.00 0.00 1.90
3453 3781 8.033178 ACACCCACCTTAACTAAGTTACTTTA 57.967 34.615 1.94 0.00 0.00 1.85
3480 3808 6.829849 TGCATATCACCAGATGAGATTACAA 58.170 36.000 0.00 0.00 41.91 2.41
3511 3839 8.787852 CATCTTCTAATAAAGGGATAGTTTGGC 58.212 37.037 0.00 0.00 0.00 4.52
3553 3881 2.762535 TTTAAAGACCTGCTCTCCCG 57.237 50.000 0.00 0.00 0.00 5.14
3555 3883 2.160721 TAAAGACCTGCTCTCCCGAT 57.839 50.000 0.00 0.00 0.00 4.18
3621 3949 2.555199 CGAGATGAGGCAAAACCCTAG 58.445 52.381 0.00 0.00 40.58 3.02
3629 3957 3.380393 AGGCAAAACCCTAGGTGTTTTT 58.620 40.909 25.98 17.41 42.38 1.94
3632 3960 4.368315 GCAAAACCCTAGGTGTTTTTGAG 58.632 43.478 28.23 20.92 42.38 3.02
3644 3972 3.096092 TGTTTTTGAGGTGTCTTTGGCT 58.904 40.909 0.00 0.00 0.00 4.75
3647 3975 0.106769 TTGAGGTGTCTTTGGCTGCA 60.107 50.000 0.50 0.00 0.00 4.41
3671 4162 8.195436 GCAGTCGGTAAGCATTATATATAGGAA 58.805 37.037 0.00 0.00 30.46 3.36
3719 4210 2.029728 CACGATCTCAAATCGACTTGGC 59.970 50.000 13.77 0.00 43.59 4.52
3747 4239 8.706492 TTAAGTTGTATACTTACCGGACAATG 57.294 34.615 9.46 0.00 46.38 2.82
3801 4293 2.749044 CAGGCAAGGCGAGCACAT 60.749 61.111 6.55 0.00 0.00 3.21
3821 4313 1.154814 GCGGGCGATCTTCTCTTTCC 61.155 60.000 0.00 0.00 0.00 3.13
3832 4324 6.407525 CGATCTTCTCTTTCCCTCCTTAACAT 60.408 42.308 0.00 0.00 0.00 2.71
3849 4341 4.890158 AACATATCACTGAGTGTGGTGA 57.110 40.909 12.93 0.00 46.20 4.02
3857 4349 3.034635 ACTGAGTGTGGTGAAGAGAACT 58.965 45.455 0.00 0.00 0.00 3.01
3884 4376 3.634568 ATAAAGAGGTCTCGCATCTCG 57.365 47.619 0.00 0.00 37.23 4.04
3927 4419 3.020984 ACTTGCCATTTTATACACGGGG 58.979 45.455 0.00 0.00 0.00 5.73
3934 4426 5.394333 GCCATTTTATACACGGGGCTTTTTA 60.394 40.000 0.00 0.00 37.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.411651 TTGACCGGGTCATGTCCACA 61.412 55.000 29.17 10.88 42.40 4.17
1 2 0.250553 TTTGACCGGGTCATGTCCAC 60.251 55.000 29.17 0.75 42.40 4.02
2 3 0.474614 TTTTGACCGGGTCATGTCCA 59.525 50.000 29.17 12.38 42.40 4.02
3 4 0.879090 GTTTTGACCGGGTCATGTCC 59.121 55.000 29.17 14.26 42.40 4.02
4 5 0.879090 GGTTTTGACCGGGTCATGTC 59.121 55.000 29.17 20.08 42.40 3.06
5 6 0.183971 TGGTTTTGACCGGGTCATGT 59.816 50.000 29.17 0.00 42.40 3.21
6 7 1.202114 CATGGTTTTGACCGGGTCATG 59.798 52.381 29.17 19.22 42.40 3.07
7 8 1.544724 CATGGTTTTGACCGGGTCAT 58.455 50.000 29.17 11.63 42.40 3.06
8 9 1.175983 GCATGGTTTTGACCGGGTCA 61.176 55.000 25.53 25.53 41.09 4.02
9 10 0.893727 AGCATGGTTTTGACCGGGTC 60.894 55.000 20.36 20.36 0.00 4.46
10 11 1.152830 AGCATGGTTTTGACCGGGT 59.847 52.632 6.32 0.00 0.00 5.28
11 12 1.586028 CAGCATGGTTTTGACCGGG 59.414 57.895 6.32 0.00 0.00 5.73
27 28 2.498167 GCAGTATCCATGCTAACCCAG 58.502 52.381 0.00 0.00 40.59 4.45
28 29 2.638480 GCAGTATCCATGCTAACCCA 57.362 50.000 0.00 0.00 40.59 4.51
35 36 3.273434 TCAACTGAAGCAGTATCCATGC 58.727 45.455 0.00 0.00 44.62 4.06
36 37 3.311871 GCTCAACTGAAGCAGTATCCATG 59.688 47.826 0.00 0.00 44.62 3.66
37 38 3.539604 GCTCAACTGAAGCAGTATCCAT 58.460 45.455 0.00 0.00 44.62 3.41
38 39 2.355108 GGCTCAACTGAAGCAGTATCCA 60.355 50.000 0.00 0.00 44.62 3.41
39 40 2.284190 GGCTCAACTGAAGCAGTATCC 58.716 52.381 0.00 0.00 44.62 2.59
40 41 1.929836 CGGCTCAACTGAAGCAGTATC 59.070 52.381 0.00 0.00 44.62 2.24
41 42 1.406069 CCGGCTCAACTGAAGCAGTAT 60.406 52.381 0.00 0.00 44.62 2.12
42 43 0.037326 CCGGCTCAACTGAAGCAGTA 60.037 55.000 0.00 0.00 44.62 2.74
44 45 2.037136 CCCGGCTCAACTGAAGCAG 61.037 63.158 0.00 0.00 37.52 4.24
45 46 2.032528 CCCGGCTCAACTGAAGCA 59.967 61.111 0.00 0.00 0.00 3.91
46 47 2.747855 CCCCGGCTCAACTGAAGC 60.748 66.667 0.00 0.00 0.00 3.86
47 48 1.915078 ATCCCCCGGCTCAACTGAAG 61.915 60.000 0.00 0.00 0.00 3.02
48 49 1.923395 ATCCCCCGGCTCAACTGAA 60.923 57.895 0.00 0.00 0.00 3.02
49 50 2.285368 ATCCCCCGGCTCAACTGA 60.285 61.111 0.00 0.00 0.00 3.41
50 51 2.124570 CATCCCCCGGCTCAACTG 60.125 66.667 0.00 0.00 0.00 3.16
51 52 1.497309 TTTCATCCCCCGGCTCAACT 61.497 55.000 0.00 0.00 0.00 3.16
52 53 1.001393 TTTCATCCCCCGGCTCAAC 60.001 57.895 0.00 0.00 0.00 3.18
53 54 1.001393 GTTTCATCCCCCGGCTCAA 60.001 57.895 0.00 0.00 0.00 3.02
54 55 1.497309 AAGTTTCATCCCCCGGCTCA 61.497 55.000 0.00 0.00 0.00 4.26
55 56 0.544697 TAAGTTTCATCCCCCGGCTC 59.455 55.000 0.00 0.00 0.00 4.70
56 57 1.143073 GATAAGTTTCATCCCCCGGCT 59.857 52.381 0.00 0.00 0.00 5.52
57 58 1.605753 GATAAGTTTCATCCCCCGGC 58.394 55.000 0.00 0.00 0.00 6.13
58 59 1.542547 CGGATAAGTTTCATCCCCCGG 60.543 57.143 0.00 0.00 39.08 5.73
59 60 1.414919 TCGGATAAGTTTCATCCCCCG 59.585 52.381 0.00 0.00 39.08 5.73
60 61 3.790089 ATCGGATAAGTTTCATCCCCC 57.210 47.619 0.00 0.00 39.08 5.40
61 62 5.130350 TGAAATCGGATAAGTTTCATCCCC 58.870 41.667 1.44 0.00 39.08 4.81
62 63 6.542370 TCTTGAAATCGGATAAGTTTCATCCC 59.458 38.462 5.59 0.00 40.37 3.85
63 64 7.281100 ACTCTTGAAATCGGATAAGTTTCATCC 59.719 37.037 5.59 0.00 40.37 3.51
64 65 8.202745 ACTCTTGAAATCGGATAAGTTTCATC 57.797 34.615 5.59 0.00 40.37 2.92
65 66 8.567285 AACTCTTGAAATCGGATAAGTTTCAT 57.433 30.769 5.59 0.00 40.37 2.57
66 67 7.979444 AACTCTTGAAATCGGATAAGTTTCA 57.021 32.000 1.44 1.44 39.36 2.69
67 68 8.504005 TCAAACTCTTGAAATCGGATAAGTTTC 58.496 33.333 0.00 0.00 38.65 2.78
68 69 8.391075 TCAAACTCTTGAAATCGGATAAGTTT 57.609 30.769 0.00 0.00 38.65 2.66
69 70 7.119846 CCTCAAACTCTTGAAATCGGATAAGTT 59.880 37.037 0.00 0.00 41.05 2.66
70 71 6.595716 CCTCAAACTCTTGAAATCGGATAAGT 59.404 38.462 0.00 0.00 41.05 2.24
71 72 6.595716 ACCTCAAACTCTTGAAATCGGATAAG 59.404 38.462 0.00 0.00 41.05 1.73
72 73 6.371548 CACCTCAAACTCTTGAAATCGGATAA 59.628 38.462 0.00 0.00 41.05 1.75
73 74 5.874810 CACCTCAAACTCTTGAAATCGGATA 59.125 40.000 0.00 0.00 41.05 2.59
74 75 4.697352 CACCTCAAACTCTTGAAATCGGAT 59.303 41.667 0.00 0.00 41.05 4.18
75 76 4.065088 CACCTCAAACTCTTGAAATCGGA 58.935 43.478 0.00 0.00 41.05 4.55
76 77 3.365364 GCACCTCAAACTCTTGAAATCGG 60.365 47.826 0.00 0.00 41.05 4.18
77 78 3.250762 TGCACCTCAAACTCTTGAAATCG 59.749 43.478 0.00 0.00 41.05 3.34
78 79 4.836125 TGCACCTCAAACTCTTGAAATC 57.164 40.909 0.00 0.00 41.05 2.17
79 80 4.646492 ACTTGCACCTCAAACTCTTGAAAT 59.354 37.500 0.00 0.00 41.05 2.17
80 81 4.016444 ACTTGCACCTCAAACTCTTGAAA 58.984 39.130 0.00 0.00 41.05 2.69
81 82 3.620488 ACTTGCACCTCAAACTCTTGAA 58.380 40.909 0.00 0.00 41.05 2.69
82 83 3.281727 ACTTGCACCTCAAACTCTTGA 57.718 42.857 0.00 0.00 39.30 3.02
83 84 3.129287 ACAACTTGCACCTCAAACTCTTG 59.871 43.478 0.00 0.00 33.65 3.02
84 85 3.356290 ACAACTTGCACCTCAAACTCTT 58.644 40.909 0.00 0.00 33.65 2.85
85 86 2.945668 GACAACTTGCACCTCAAACTCT 59.054 45.455 0.00 0.00 33.65 3.24
86 87 2.945668 AGACAACTTGCACCTCAAACTC 59.054 45.455 0.00 0.00 33.65 3.01
87 88 2.684881 CAGACAACTTGCACCTCAAACT 59.315 45.455 0.00 0.00 33.65 2.66
88 89 2.682856 TCAGACAACTTGCACCTCAAAC 59.317 45.455 0.00 0.00 33.65 2.93
89 90 2.997980 TCAGACAACTTGCACCTCAAA 58.002 42.857 0.00 0.00 33.65 2.69
90 91 2.708216 TCAGACAACTTGCACCTCAA 57.292 45.000 0.00 0.00 0.00 3.02
91 92 2.936919 ATCAGACAACTTGCACCTCA 57.063 45.000 0.00 0.00 0.00 3.86
92 93 3.364366 CGAAATCAGACAACTTGCACCTC 60.364 47.826 0.00 0.00 0.00 3.85
93 94 2.549754 CGAAATCAGACAACTTGCACCT 59.450 45.455 0.00 0.00 0.00 4.00
94 95 2.290641 ACGAAATCAGACAACTTGCACC 59.709 45.455 0.00 0.00 0.00 5.01
95 96 3.609103 ACGAAATCAGACAACTTGCAC 57.391 42.857 0.00 0.00 0.00 4.57
96 97 4.377021 ACTACGAAATCAGACAACTTGCA 58.623 39.130 0.00 0.00 0.00 4.08
97 98 4.992381 ACTACGAAATCAGACAACTTGC 57.008 40.909 0.00 0.00 0.00 4.01
98 99 6.346919 CCTCAACTACGAAATCAGACAACTTG 60.347 42.308 0.00 0.00 0.00 3.16
99 100 5.696724 CCTCAACTACGAAATCAGACAACTT 59.303 40.000 0.00 0.00 0.00 2.66
100 101 5.230942 CCTCAACTACGAAATCAGACAACT 58.769 41.667 0.00 0.00 0.00 3.16
101 102 4.389077 CCCTCAACTACGAAATCAGACAAC 59.611 45.833 0.00 0.00 0.00 3.32
102 103 4.282449 TCCCTCAACTACGAAATCAGACAA 59.718 41.667 0.00 0.00 0.00 3.18
103 104 3.830178 TCCCTCAACTACGAAATCAGACA 59.170 43.478 0.00 0.00 0.00 3.41
104 105 4.174762 GTCCCTCAACTACGAAATCAGAC 58.825 47.826 0.00 0.00 0.00 3.51
105 106 3.119602 CGTCCCTCAACTACGAAATCAGA 60.120 47.826 0.00 0.00 38.89 3.27
106 107 3.119602 TCGTCCCTCAACTACGAAATCAG 60.120 47.826 0.00 0.00 42.18 2.90
107 108 2.821378 TCGTCCCTCAACTACGAAATCA 59.179 45.455 0.00 0.00 42.18 2.57
108 109 3.498927 TCGTCCCTCAACTACGAAATC 57.501 47.619 0.00 0.00 42.18 2.17
112 113 3.087031 AGATTTCGTCCCTCAACTACGA 58.913 45.455 0.00 0.00 43.31 3.43
113 114 3.505464 AGATTTCGTCCCTCAACTACG 57.495 47.619 0.00 0.00 37.96 3.51
114 115 5.357596 AGTCTAGATTTCGTCCCTCAACTAC 59.642 44.000 0.00 0.00 0.00 2.73
115 116 5.507637 AGTCTAGATTTCGTCCCTCAACTA 58.492 41.667 0.00 0.00 0.00 2.24
116 117 4.345854 AGTCTAGATTTCGTCCCTCAACT 58.654 43.478 0.00 0.00 0.00 3.16
117 118 4.722361 AGTCTAGATTTCGTCCCTCAAC 57.278 45.455 0.00 0.00 0.00 3.18
118 119 4.142447 CGAAGTCTAGATTTCGTCCCTCAA 60.142 45.833 31.16 0.00 42.87 3.02
119 120 3.377485 CGAAGTCTAGATTTCGTCCCTCA 59.623 47.826 31.16 0.00 42.87 3.86
120 121 3.954999 CGAAGTCTAGATTTCGTCCCTC 58.045 50.000 31.16 6.52 42.87 4.30
121 122 5.046795 GGCGAAGTCTAGATTTCGTCCCT 62.047 52.174 35.69 10.13 45.32 4.20
122 123 2.798853 GGCGAAGTCTAGATTTCGTCCC 60.799 54.545 35.69 28.80 45.32 4.46
123 124 2.461903 GGCGAAGTCTAGATTTCGTCC 58.538 52.381 35.69 32.20 45.32 4.79
127 128 5.864628 ACTTTTGGCGAAGTCTAGATTTC 57.135 39.130 16.00 16.00 34.94 2.17
128 129 5.763204 TGAACTTTTGGCGAAGTCTAGATTT 59.237 36.000 0.00 0.00 38.86 2.17
129 130 5.305585 TGAACTTTTGGCGAAGTCTAGATT 58.694 37.500 0.00 0.00 38.86 2.40
130 131 4.894784 TGAACTTTTGGCGAAGTCTAGAT 58.105 39.130 0.00 0.00 38.86 1.98
131 132 4.307432 CTGAACTTTTGGCGAAGTCTAGA 58.693 43.478 6.55 0.00 38.86 2.43
132 133 3.433615 CCTGAACTTTTGGCGAAGTCTAG 59.566 47.826 6.55 7.80 38.86 2.43
133 134 3.399330 CCTGAACTTTTGGCGAAGTCTA 58.601 45.455 6.55 0.02 38.86 2.59
134 135 2.222027 CCTGAACTTTTGGCGAAGTCT 58.778 47.619 6.55 0.00 38.86 3.24
135 136 1.266989 CCCTGAACTTTTGGCGAAGTC 59.733 52.381 6.55 0.00 38.86 3.01
136 137 1.133915 TCCCTGAACTTTTGGCGAAGT 60.134 47.619 0.77 0.77 41.44 3.01
137 138 1.266989 GTCCCTGAACTTTTGGCGAAG 59.733 52.381 0.00 0.00 0.00 3.79
138 139 1.314730 GTCCCTGAACTTTTGGCGAA 58.685 50.000 0.00 0.00 0.00 4.70
139 140 0.882927 CGTCCCTGAACTTTTGGCGA 60.883 55.000 0.00 0.00 0.00 5.54
140 141 0.882927 TCGTCCCTGAACTTTTGGCG 60.883 55.000 0.00 0.00 0.00 5.69
141 142 1.314730 TTCGTCCCTGAACTTTTGGC 58.685 50.000 0.00 0.00 0.00 4.52
142 143 3.380320 ACTTTTCGTCCCTGAACTTTTGG 59.620 43.478 0.00 0.00 0.00 3.28
143 144 4.632538 ACTTTTCGTCCCTGAACTTTTG 57.367 40.909 0.00 0.00 0.00 2.44
144 145 7.222161 AGTATACTTTTCGTCCCTGAACTTTT 58.778 34.615 0.00 0.00 0.00 2.27
145 146 6.766429 AGTATACTTTTCGTCCCTGAACTTT 58.234 36.000 0.00 0.00 0.00 2.66
146 147 6.356186 AGTATACTTTTCGTCCCTGAACTT 57.644 37.500 0.00 0.00 0.00 2.66
147 148 5.997384 AGTATACTTTTCGTCCCTGAACT 57.003 39.130 0.00 0.00 0.00 3.01
166 167 8.960075 GCGCACAATAAAAGTAAAAGAAAAGTA 58.040 29.630 0.30 0.00 0.00 2.24
167 168 7.042992 GGCGCACAATAAAAGTAAAAGAAAAGT 60.043 33.333 10.83 0.00 0.00 2.66
168 169 7.043059 TGGCGCACAATAAAAGTAAAAGAAAAG 60.043 33.333 10.83 0.00 0.00 2.27
169 170 6.757010 TGGCGCACAATAAAAGTAAAAGAAAA 59.243 30.769 10.83 0.00 0.00 2.29
170 171 6.273825 TGGCGCACAATAAAAGTAAAAGAAA 58.726 32.000 10.83 0.00 0.00 2.52
171 172 5.833082 TGGCGCACAATAAAAGTAAAAGAA 58.167 33.333 10.83 0.00 0.00 2.52
172 173 5.440234 TGGCGCACAATAAAAGTAAAAGA 57.560 34.783 10.83 0.00 0.00 2.52
197 198 0.523966 CTCCAACGGCCGCATAAAAA 59.476 50.000 28.58 3.30 0.00 1.94
198 199 0.321741 TCTCCAACGGCCGCATAAAA 60.322 50.000 28.58 4.07 0.00 1.52
199 200 0.107410 ATCTCCAACGGCCGCATAAA 60.107 50.000 28.58 7.17 0.00 1.40
200 201 0.753867 TATCTCCAACGGCCGCATAA 59.246 50.000 28.58 7.99 0.00 1.90
201 202 0.032952 GTATCTCCAACGGCCGCATA 59.967 55.000 28.58 7.56 0.00 3.14
202 203 1.227556 GTATCTCCAACGGCCGCAT 60.228 57.895 28.58 12.52 0.00 4.73
203 204 2.185867 GTATCTCCAACGGCCGCA 59.814 61.111 28.58 5.69 0.00 5.69
204 205 1.591863 GAGTATCTCCAACGGCCGC 60.592 63.158 28.58 5.08 0.00 6.53
205 206 4.732106 GAGTATCTCCAACGGCCG 57.268 61.111 26.86 26.86 0.00 6.13
210 211 6.520946 GCGACTGCATTAGAGTATCTCCAAC 61.521 48.000 0.00 0.00 43.57 3.77
211 212 4.499865 GCGACTGCATTAGAGTATCTCCAA 60.500 45.833 0.00 0.00 43.57 3.53
212 213 3.004839 GCGACTGCATTAGAGTATCTCCA 59.995 47.826 0.00 0.00 43.57 3.86
213 214 3.570559 GCGACTGCATTAGAGTATCTCC 58.429 50.000 0.00 0.00 43.57 3.71
214 215 3.570559 GGCGACTGCATTAGAGTATCTC 58.429 50.000 0.00 0.00 43.57 2.75
216 217 2.297597 AGGGCGACTGCATTAGAGTATC 59.702 50.000 0.00 0.00 45.35 2.24
217 218 2.036475 CAGGGCGACTGCATTAGAGTAT 59.964 50.000 0.00 0.00 45.35 2.12
218 219 1.409064 CAGGGCGACTGCATTAGAGTA 59.591 52.381 0.00 0.00 45.35 2.59
219 220 0.176680 CAGGGCGACTGCATTAGAGT 59.823 55.000 0.00 0.00 45.35 3.24
220 221 2.983433 CAGGGCGACTGCATTAGAG 58.017 57.895 0.00 0.00 45.35 2.43
258 259 0.391263 GTTTTCCTCCTCGATGCGGT 60.391 55.000 0.00 0.00 0.00 5.68
261 262 1.706287 GCGGTTTTCCTCCTCGATGC 61.706 60.000 0.00 0.00 37.95 3.91
297 298 2.819608 TGGGAGAAGGAATCGCAAAAAG 59.180 45.455 0.00 0.00 36.77 2.27
326 327 5.597182 AGGATCATGCATTGCTGTATTTTCT 59.403 36.000 10.49 0.00 0.00 2.52
346 347 3.244353 CGCCATCTAACAGATCCAAGGAT 60.244 47.826 0.16 0.16 31.32 3.24
357 358 1.138266 GCTAGGGAACGCCATCTAACA 59.862 52.381 0.00 0.00 35.15 2.41
388 394 1.621301 CTCTCGCCGTGCTTTCACAG 61.621 60.000 0.00 0.00 43.28 3.66
396 403 0.947180 TTTGGTTACTCTCGCCGTGC 60.947 55.000 0.00 0.00 0.00 5.34
417 434 4.024048 GGCAACAAGAAGAACTCGAATTCA 60.024 41.667 9.55 0.00 0.00 2.57
483 500 4.554134 CGGGTCATGTGATGTAGTACTACG 60.554 50.000 24.36 11.00 38.85 3.51
484 501 4.337555 ACGGGTCATGTGATGTAGTACTAC 59.662 45.833 23.58 23.58 36.63 2.73
485 502 4.529897 ACGGGTCATGTGATGTAGTACTA 58.470 43.478 0.00 0.00 0.00 1.82
486 503 3.362706 ACGGGTCATGTGATGTAGTACT 58.637 45.455 0.00 0.00 0.00 2.73
487 504 3.795623 ACGGGTCATGTGATGTAGTAC 57.204 47.619 0.00 0.00 0.00 2.73
488 505 3.317149 GCTACGGGTCATGTGATGTAGTA 59.683 47.826 15.24 6.33 33.53 1.82
505 524 1.134995 TCTGTCTTGGCATGAGCTACG 60.135 52.381 2.94 0.00 41.70 3.51
538 557 2.033141 CTGTGTCCAGCCAGGTGG 59.967 66.667 9.65 9.65 39.02 4.61
628 647 4.329545 GCCGCCAGTGGGACTTGA 62.330 66.667 12.15 0.00 35.59 3.02
713 756 2.726821 TGGATCATGGAAAAGCAGGTC 58.273 47.619 0.00 0.00 0.00 3.85
765 856 1.359459 GGTTGACGCGGATTGGACTC 61.359 60.000 12.47 0.00 0.00 3.36
792 883 4.421948 GCTCGTGTGTATATATAGTGGCC 58.578 47.826 0.00 0.00 0.00 5.36
840 931 1.971357 AGTAGTGTCTTGGTGTGAGGG 59.029 52.381 0.00 0.00 0.00 4.30
841 932 2.289072 CCAGTAGTGTCTTGGTGTGAGG 60.289 54.545 0.00 0.00 0.00 3.86
962 1055 0.319297 ACACGCTACGGTCCAACTTC 60.319 55.000 0.00 0.00 0.00 3.01
984 1077 1.491668 TCATGGCGCCCTAGTAGAAA 58.508 50.000 26.77 0.73 0.00 2.52
1566 1675 4.115199 GGCGACCCAGGGCTGATT 62.115 66.667 4.91 0.00 0.00 2.57
1671 1780 1.596934 GGCAACCTCCGTGATCTCA 59.403 57.895 0.00 0.00 0.00 3.27
1809 1918 3.109547 GCGATGTGCGTCACCGAA 61.110 61.111 0.00 0.00 43.41 4.30
1827 1936 1.005215 ACCTTCTTCCCTGCCATCAAG 59.995 52.381 0.00 0.00 0.00 3.02
1872 1981 0.545646 AGATGAGGCCAAGGAAGCTC 59.454 55.000 5.01 0.00 0.00 4.09
1899 2008 1.405121 GGGACGTACTTGAAGGCGATT 60.405 52.381 15.88 0.00 0.00 3.34
1905 2014 4.994852 TGAATGAAAGGGACGTACTTGAAG 59.005 41.667 0.00 0.00 0.00 3.02
1931 2040 5.047943 ACAGGAATATGTACGAGGTATGAGC 60.048 44.000 0.00 0.00 0.00 4.26
1938 2054 2.365617 AGGCACAGGAATATGTACGAGG 59.634 50.000 0.00 0.00 0.00 4.63
1939 2055 3.735237 AGGCACAGGAATATGTACGAG 57.265 47.619 0.00 0.00 0.00 4.18
1940 2056 5.801531 AATAGGCACAGGAATATGTACGA 57.198 39.130 0.00 0.00 0.00 3.43
1942 2058 6.296026 TCCAAATAGGCACAGGAATATGTAC 58.704 40.000 0.00 0.00 37.29 2.90
1944 2060 5.387113 TCCAAATAGGCACAGGAATATGT 57.613 39.130 0.00 0.00 37.29 2.29
1945 2061 8.051535 AGATATCCAAATAGGCACAGGAATATG 58.948 37.037 0.00 0.00 37.29 1.78
1946 2062 8.167691 AGATATCCAAATAGGCACAGGAATAT 57.832 34.615 0.00 0.00 37.29 1.28
1947 2063 7.574021 AGATATCCAAATAGGCACAGGAATA 57.426 36.000 0.00 0.00 37.29 1.75
1948 2064 6.460103 AGATATCCAAATAGGCACAGGAAT 57.540 37.500 0.00 0.00 37.29 3.01
1950 2066 5.608437 AGAAGATATCCAAATAGGCACAGGA 59.392 40.000 0.00 0.00 37.29 3.86
1952 2068 5.936956 GGAGAAGATATCCAAATAGGCACAG 59.063 44.000 0.00 0.00 36.79 3.66
1953 2069 5.608437 AGGAGAAGATATCCAAATAGGCACA 59.392 40.000 0.00 0.00 39.47 4.57
1954 2070 6.120507 AGGAGAAGATATCCAAATAGGCAC 57.879 41.667 0.00 0.00 39.47 5.01
1955 2071 7.872061 TTAGGAGAAGATATCCAAATAGGCA 57.128 36.000 0.00 0.00 39.47 4.75
1956 2072 8.325046 ACATTAGGAGAAGATATCCAAATAGGC 58.675 37.037 0.00 0.00 39.47 3.93
1963 2079 8.523658 CGTGAATACATTAGGAGAAGATATCCA 58.476 37.037 0.00 0.00 39.47 3.41
1964 2080 8.524487 ACGTGAATACATTAGGAGAAGATATCC 58.476 37.037 0.00 0.00 37.07 2.59
1966 2082 8.237949 CGACGTGAATACATTAGGAGAAGATAT 58.762 37.037 0.00 0.00 0.00 1.63
1968 2084 6.262496 TCGACGTGAATACATTAGGAGAAGAT 59.738 38.462 0.00 0.00 0.00 2.40
1970 2086 5.817988 TCGACGTGAATACATTAGGAGAAG 58.182 41.667 0.00 0.00 0.00 2.85
1972 2088 5.763698 AGATCGACGTGAATACATTAGGAGA 59.236 40.000 0.00 0.00 0.00 3.71
1973 2089 6.003234 AGATCGACGTGAATACATTAGGAG 57.997 41.667 0.00 0.00 0.00 3.69
1982 2101 5.556355 ACACAAGTAGATCGACGTGAATA 57.444 39.130 24.02 0.00 33.61 1.75
2007 2126 0.824109 TCTTGATCCCGCACCTGTAG 59.176 55.000 0.00 0.00 0.00 2.74
2008 2127 1.138859 CATCTTGATCCCGCACCTGTA 59.861 52.381 0.00 0.00 0.00 2.74
2009 2128 0.107508 CATCTTGATCCCGCACCTGT 60.108 55.000 0.00 0.00 0.00 4.00
2040 2159 1.007734 GGTGAACAGCGAGTCGTCA 60.008 57.895 15.08 6.94 0.00 4.35
2049 2168 0.037326 TCGTCTGGATGGTGAACAGC 60.037 55.000 0.00 0.00 33.87 4.40
2073 2192 1.503542 GAACATGCTGAGCCCAACG 59.496 57.895 0.23 0.00 0.00 4.10
2115 2234 4.047059 GGGACGAACCGCGACTGA 62.047 66.667 8.23 0.00 44.57 3.41
2154 2273 1.730501 ACTTGAGCACCATCGACATG 58.269 50.000 0.00 0.00 0.00 3.21
2155 2274 2.350522 GAACTTGAGCACCATCGACAT 58.649 47.619 0.00 0.00 0.00 3.06
2291 2410 3.243877 CCGTCGCACATCTCAAGAAATAG 59.756 47.826 0.00 0.00 0.00 1.73
2308 2427 4.509915 AACGTAGAAATAAATGCCGTCG 57.490 40.909 0.00 0.00 0.00 5.12
2313 2432 6.192863 CGCTCAAGAAACGTAGAAATAAATGC 59.807 38.462 0.00 0.00 0.00 3.56
2350 2469 1.599240 GGCATGGCAGCTAGTAGGC 60.599 63.158 15.47 3.68 34.17 3.93
2355 2474 2.904676 CGCATGGCATGGCAGCTAG 61.905 63.158 27.48 16.79 34.17 3.42
2356 2475 2.903350 CGCATGGCATGGCAGCTA 60.903 61.111 27.48 3.53 34.17 3.32
2359 2478 3.454573 AACCGCATGGCATGGCAG 61.455 61.111 27.48 18.79 39.70 4.85
2360 2479 3.761140 CAACCGCATGGCATGGCA 61.761 61.111 27.48 25.52 39.70 4.92
2362 2481 3.761140 TGCAACCGCATGGCATGG 61.761 61.111 27.48 15.35 45.36 3.66
2371 2490 1.709147 CTACTGGAGCATGCAACCGC 61.709 60.000 21.98 3.24 34.45 5.68
2458 2577 4.380867 CCACTTTATGGGTCAGCATTTGTC 60.381 45.833 0.00 0.00 45.95 3.18
2480 2677 4.434520 TCAAAAATTGTGGGTTTCGTTCC 58.565 39.130 0.00 0.00 0.00 3.62
2500 2697 0.515564 GCTCGCGGTAAAAAGCTTCA 59.484 50.000 6.13 0.00 0.00 3.02
2504 2701 0.095417 CTCAGCTCGCGGTAAAAAGC 59.905 55.000 6.13 6.70 34.95 3.51
2516 2713 9.387123 CTTAATTTAGTTTGTTCAACTCAGCTC 57.613 33.333 0.00 0.00 42.62 4.09
2517 2714 7.862873 GCTTAATTTAGTTTGTTCAACTCAGCT 59.137 33.333 0.00 0.00 42.62 4.24
2518 2715 7.149128 CGCTTAATTTAGTTTGTTCAACTCAGC 60.149 37.037 0.00 0.00 42.62 4.26
2519 2716 7.323656 CCGCTTAATTTAGTTTGTTCAACTCAG 59.676 37.037 0.00 0.00 42.62 3.35
2520 2717 7.136119 CCGCTTAATTTAGTTTGTTCAACTCA 58.864 34.615 0.00 0.00 42.62 3.41
2521 2718 7.112984 CACCGCTTAATTTAGTTTGTTCAACTC 59.887 37.037 0.00 0.00 42.62 3.01
2538 2735 0.889994 TTAGCTCCGACACCGCTTAA 59.110 50.000 0.00 0.00 35.33 1.85
2590 2791 6.377327 TCAGCTTTGGTCTAAACTCTTTTG 57.623 37.500 0.00 0.00 0.00 2.44
2591 2792 6.460261 GCTTCAGCTTTGGTCTAAACTCTTTT 60.460 38.462 0.00 0.00 38.21 2.27
2592 2793 5.009110 GCTTCAGCTTTGGTCTAAACTCTTT 59.991 40.000 0.00 0.00 38.21 2.52
2593 2794 4.517075 GCTTCAGCTTTGGTCTAAACTCTT 59.483 41.667 0.00 0.00 38.21 2.85
2666 2984 7.225784 ACATGCATGTCAAAAATAGTGGTTA 57.774 32.000 26.61 0.00 35.87 2.85
2704 3022 1.265454 AAGTCACGGCTAGGGGAAGG 61.265 60.000 0.00 0.00 0.00 3.46
2707 3025 0.325296 ATGAAGTCACGGCTAGGGGA 60.325 55.000 0.00 0.00 0.00 4.81
2849 3167 7.147976 CCTGAAAAGAACAAAAACCAGATAGG 58.852 38.462 0.00 0.00 45.67 2.57
2898 3216 0.180406 ATACAATGGTGACGGGGAGC 59.820 55.000 0.00 0.00 0.00 4.70
2934 3252 4.393371 CGATCTTGGTAGCTCGATCATAGA 59.607 45.833 17.76 0.00 41.32 1.98
2964 3282 1.138247 CATGCGCTTTTCAGGCCTC 59.862 57.895 9.73 0.00 0.00 4.70
2997 3315 1.472082 CTTCAACTGTTGTGTGGCACA 59.528 47.619 17.96 17.96 43.02 4.57
3049 3367 7.147320 TGGATTATCATGTTGGAGTCCAGTAAT 60.147 37.037 12.67 10.71 33.81 1.89
3050 3368 6.157820 TGGATTATCATGTTGGAGTCCAGTAA 59.842 38.462 12.67 2.39 33.81 2.24
3051 3369 5.665360 TGGATTATCATGTTGGAGTCCAGTA 59.335 40.000 12.67 5.92 33.81 2.74
3163 3482 5.064325 GTCCAACGTGAAGTTTGAACTAACT 59.936 40.000 0.00 0.00 42.02 2.24
3171 3490 4.920927 ACTTTTTGTCCAACGTGAAGTTTG 59.079 37.500 0.00 0.00 42.02 2.93
3179 3498 2.684374 GGTGGTACTTTTTGTCCAACGT 59.316 45.455 0.00 0.00 31.25 3.99
3181 3500 3.317149 GGAGGTGGTACTTTTTGTCCAAC 59.683 47.826 0.00 0.00 35.33 3.77
3197 3516 4.640647 GCCTAATAAACTGGAAAGGAGGTG 59.359 45.833 0.00 0.00 0.00 4.00
3209 3528 2.781681 ACGTGCAGGCCTAATAAACT 57.218 45.000 3.98 0.00 0.00 2.66
3371 3691 3.392882 TCATTAGGCATGCGTGTATCTG 58.607 45.455 22.60 11.81 32.13 2.90
3414 3734 3.311966 GTGGGTGTACGAGACTTTGTAC 58.688 50.000 10.46 10.46 42.30 2.90
3453 3781 7.940688 TGTAATCTCATCTGGTGATATGCATTT 59.059 33.333 3.54 0.00 35.97 2.32
3493 3821 6.092346 AGAAGGCCAAACTATCCCTTTATT 57.908 37.500 5.01 0.00 37.78 1.40
3507 3835 1.707989 TCCACCATGTAAGAAGGCCAA 59.292 47.619 5.01 0.00 0.00 4.52
3543 3871 2.647875 CGGCTATCGGGAGAGCAG 59.352 66.667 16.19 9.09 46.70 4.24
3553 3881 1.299926 ATCACGAACGCCGGCTATC 60.300 57.895 26.68 20.55 43.93 2.08
3555 3883 2.202690 CATCACGAACGCCGGCTA 60.203 61.111 26.68 0.78 43.93 3.93
3621 3949 3.780902 CCAAAGACACCTCAAAAACACC 58.219 45.455 0.00 0.00 0.00 4.16
3629 3957 0.535780 CTGCAGCCAAAGACACCTCA 60.536 55.000 0.00 0.00 0.00 3.86
3632 3960 1.845809 CGACTGCAGCCAAAGACACC 61.846 60.000 15.27 0.00 0.00 4.16
3644 3972 7.340999 TCCTATATATAATGCTTACCGACTGCA 59.659 37.037 0.00 0.00 41.13 4.41
3688 4179 0.028110 TGAGATCGTGATCGCGACAG 59.972 55.000 31.68 2.91 43.99 3.51
3747 4239 5.691754 CACTTGGCAGAAAAGTTTATGGTTC 59.308 40.000 1.01 0.00 35.70 3.62
3794 4286 3.643978 GATCGCCCGCATGTGCTC 61.644 66.667 0.00 0.00 39.32 4.26
3797 4289 1.493950 GAGAAGATCGCCCGCATGTG 61.494 60.000 0.00 0.00 0.00 3.21
3798 4290 1.227380 GAGAAGATCGCCCGCATGT 60.227 57.895 0.00 0.00 0.00 3.21
3800 4292 0.179000 AAAGAGAAGATCGCCCGCAT 59.821 50.000 0.00 0.00 0.00 4.73
3801 4293 0.460284 GAAAGAGAAGATCGCCCGCA 60.460 55.000 0.00 0.00 0.00 5.69
3805 4297 1.202592 GGAGGGAAAGAGAAGATCGCC 60.203 57.143 0.00 0.00 0.00 5.54
3806 4298 1.760029 AGGAGGGAAAGAGAAGATCGC 59.240 52.381 0.00 0.00 0.00 4.58
3807 4299 5.105310 TGTTAAGGAGGGAAAGAGAAGATCG 60.105 44.000 0.00 0.00 0.00 3.69
3821 4313 6.227298 ACACTCAGTGATATGTTAAGGAGG 57.773 41.667 13.14 0.00 36.96 4.30
3849 4341 9.930158 AGACCTCTTTATATAGTGAGTTCTCTT 57.070 33.333 7.71 0.00 0.00 2.85
3857 4349 6.943146 AGATGCGAGACCTCTTTATATAGTGA 59.057 38.462 0.00 0.00 0.00 3.41
3877 4369 1.429463 AACCGAAGTTGACGAGATGC 58.571 50.000 0.00 0.00 33.97 3.91
3902 4394 5.529430 CCCGTGTATAAAATGGCAAGTGATA 59.471 40.000 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.