Multiple sequence alignment - TraesCS3A01G331200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G331200 chr3A 100.000 3011 0 0 1 3011 575611840 575614850 0.000000e+00 5561.0
1 TraesCS3A01G331200 chr3B 91.175 2255 121 21 1 2205 572788996 572791222 0.000000e+00 2990.0
2 TraesCS3A01G331200 chr3B 83.129 652 58 33 2361 2996 572799080 572799695 5.680000e-152 547.0
3 TraesCS3A01G331200 chr3B 83.333 144 18 4 2597 2738 560119347 560119208 8.760000e-26 128.0
4 TraesCS3A01G331200 chr3D 87.940 2413 148 53 1 2335 437668621 437670968 0.000000e+00 2712.0
5 TraesCS3A01G331200 chr3D 88.641 449 34 9 2441 2881 437681867 437682306 5.720000e-147 531.0
6 TraesCS3A01G331200 chr3D 83.553 152 20 4 2588 2737 428468924 428468776 1.460000e-28 137.0
7 TraesCS3A01G331200 chr1D 79.763 761 104 28 1134 1887 407209040 407208323 9.630000e-140 507.0
8 TraesCS3A01G331200 chr1A 79.573 749 101 27 1134 1874 502824414 502823710 3.490000e-134 488.0
9 TraesCS3A01G331200 chr1B 79.101 756 100 37 1134 1875 547578307 547577596 4.550000e-128 468.0
10 TraesCS3A01G331200 chr5A 78.947 228 40 7 2523 2746 540277125 540276902 6.730000e-32 148.0
11 TraesCS3A01G331200 chr2A 76.963 191 25 15 2595 2778 692760292 692760470 1.150000e-14 91.6
12 TraesCS3A01G331200 chr5D 80.672 119 18 3 2607 2723 277566050 277566165 1.490000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G331200 chr3A 575611840 575614850 3010 False 5561 5561 100.000 1 3011 1 chr3A.!!$F1 3010
1 TraesCS3A01G331200 chr3B 572788996 572791222 2226 False 2990 2990 91.175 1 2205 1 chr3B.!!$F1 2204
2 TraesCS3A01G331200 chr3B 572799080 572799695 615 False 547 547 83.129 2361 2996 1 chr3B.!!$F2 635
3 TraesCS3A01G331200 chr3D 437668621 437670968 2347 False 2712 2712 87.940 1 2335 1 chr3D.!!$F1 2334
4 TraesCS3A01G331200 chr1D 407208323 407209040 717 True 507 507 79.763 1134 1887 1 chr1D.!!$R1 753
5 TraesCS3A01G331200 chr1A 502823710 502824414 704 True 488 488 79.573 1134 1874 1 chr1A.!!$R1 740
6 TraesCS3A01G331200 chr1B 547577596 547578307 711 True 468 468 79.101 1134 1875 1 chr1B.!!$R1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 762 0.035630 GATGGCTCTTGCAGTCCAGT 60.036 55.0 4.95 0.0 41.91 4.00 F
734 763 0.322277 ATGGCTCTTGCAGTCCAGTG 60.322 55.0 4.95 0.0 41.91 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1959 2054 0.250166 AAGTGAACACACGGTAGCCC 60.250 55.000 7.68 0.0 39.25 5.19 R
2188 2293 1.003580 AGTCAAATCACATCGGCCTGT 59.996 47.619 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 0.168348 CGACACGTACCCAGTCAGAG 59.832 60.000 4.17 0.00 32.68 3.35
129 138 2.809174 CGCTGCAACGGATGTCGA 60.809 61.111 0.45 0.00 42.43 4.20
137 146 2.576053 CGGATGTCGACGTGTCCG 60.576 66.667 29.52 29.52 46.26 4.79
213 222 5.683743 CACCGCTGAAAAAGAACGATAAAAA 59.316 36.000 0.00 0.00 0.00 1.94
347 361 2.734723 CTGCAGGTCGACACGTGG 60.735 66.667 21.57 2.57 38.60 4.94
475 493 1.948611 GCTTTTGATACGGACAGGCCA 60.949 52.381 5.01 0.00 35.94 5.36
478 496 2.902705 TTGATACGGACAGGCCATAC 57.097 50.000 5.01 0.00 35.94 2.39
610 628 4.033990 TCGATGCACAAGCTTACTCTAG 57.966 45.455 0.00 0.00 42.74 2.43
634 652 2.125512 AGGACGCGTTGATCCAGC 60.126 61.111 15.53 0.00 37.47 4.85
670 691 2.486592 GGCGTGCTTATTTTACTGTGGT 59.513 45.455 0.00 0.00 0.00 4.16
678 699 5.588648 GCTTATTTTACTGTGGTGCTATCCA 59.411 40.000 0.00 0.00 34.85 3.41
681 702 4.634012 TTTACTGTGGTGCTATCCAGTT 57.366 40.909 0.00 0.00 38.91 3.16
692 713 4.332819 GTGCTATCCAGTTGCGTATCTTTT 59.667 41.667 0.00 0.00 0.00 2.27
700 725 3.260884 AGTTGCGTATCTTTTGGAGGAGA 59.739 43.478 0.00 0.00 0.00 3.71
703 728 3.134458 GCGTATCTTTTGGAGGAGATGG 58.866 50.000 0.00 0.00 34.60 3.51
718 747 5.198965 AGGAGATGGAAATTGACAAGATGG 58.801 41.667 0.00 0.00 0.00 3.51
721 750 4.643784 AGATGGAAATTGACAAGATGGCTC 59.356 41.667 0.00 0.00 0.00 4.70
733 762 0.035630 GATGGCTCTTGCAGTCCAGT 60.036 55.000 4.95 0.00 41.91 4.00
734 763 0.322277 ATGGCTCTTGCAGTCCAGTG 60.322 55.000 4.95 0.00 41.91 3.66
736 765 0.035630 GGCTCTTGCAGTCCAGTGAT 60.036 55.000 0.00 0.00 41.91 3.06
741 770 1.203287 CTTGCAGTCCAGTGATCGAGA 59.797 52.381 0.00 0.00 0.00 4.04
743 772 0.524392 GCAGTCCAGTGATCGAGACG 60.524 60.000 0.00 0.00 34.41 4.18
759 788 3.921021 CGAGACGAGCAACAAATTACTCT 59.079 43.478 0.00 0.00 0.00 3.24
760 789 5.093457 CGAGACGAGCAACAAATTACTCTA 58.907 41.667 0.00 0.00 0.00 2.43
764 793 4.857588 ACGAGCAACAAATTACTCTAGTCG 59.142 41.667 0.00 0.00 0.00 4.18
765 794 4.265556 CGAGCAACAAATTACTCTAGTCGG 59.734 45.833 0.00 0.00 0.00 4.79
766 795 5.148651 AGCAACAAATTACTCTAGTCGGT 57.851 39.130 0.00 0.00 0.00 4.69
767 796 5.169295 AGCAACAAATTACTCTAGTCGGTC 58.831 41.667 0.00 0.00 0.00 4.79
768 797 5.047235 AGCAACAAATTACTCTAGTCGGTCT 60.047 40.000 0.00 0.00 0.00 3.85
769 798 5.288952 GCAACAAATTACTCTAGTCGGTCTC 59.711 44.000 0.00 0.00 0.00 3.36
770 799 5.232610 ACAAATTACTCTAGTCGGTCTCG 57.767 43.478 0.00 0.00 37.82 4.04
771 800 4.096081 ACAAATTACTCTAGTCGGTCTCGG 59.904 45.833 0.00 0.00 36.95 4.63
772 801 1.661341 TTACTCTAGTCGGTCTCGGC 58.339 55.000 0.00 0.00 42.03 5.54
773 802 0.529337 TACTCTAGTCGGTCTCGGCG 60.529 60.000 0.00 0.00 46.91 6.46
774 803 3.170810 CTCTAGTCGGTCTCGGCGC 62.171 68.421 0.00 0.00 46.91 6.53
794 823 3.952811 GAGCGTGAGTGGTCCAAC 58.047 61.111 0.00 0.00 0.00 3.77
808 837 1.826054 CCAACTGTCCAACGGGCAA 60.826 57.895 0.00 0.00 0.00 4.52
830 867 4.955774 GACACGACACGGCCGGTT 62.956 66.667 31.76 16.26 0.00 4.44
940 994 6.315642 GCATATGCACATTAGCTACTCATCAT 59.684 38.462 22.84 0.00 41.59 2.45
942 996 6.798315 ATGCACATTAGCTACTCATCATTC 57.202 37.500 0.00 0.00 34.99 2.67
943 997 5.673514 TGCACATTAGCTACTCATCATTCA 58.326 37.500 0.00 0.00 34.99 2.57
978 1032 4.259356 GCTACTACCTTTTCGTTTGGGAT 58.741 43.478 0.00 0.00 0.00 3.85
1005 1059 2.158871 ACGTGCCTGTTCCAAGTTAAGA 60.159 45.455 0.00 0.00 0.00 2.10
1006 1060 2.480419 CGTGCCTGTTCCAAGTTAAGAG 59.520 50.000 0.00 0.00 0.00 2.85
1863 1958 2.653448 CTCGCGCATCTCACCTCG 60.653 66.667 8.75 0.00 0.00 4.63
1875 1970 3.773370 ACCTCGAGTGAAGGCGAA 58.227 55.556 12.31 0.00 35.95 4.70
1883 1978 1.659335 GTGAAGGCGAACACGACGA 60.659 57.895 0.00 0.00 40.30 4.20
1959 2054 0.670546 CCCAGTGAGCGTAGTTGGTG 60.671 60.000 0.00 0.00 0.00 4.17
1960 2055 0.670546 CCAGTGAGCGTAGTTGGTGG 60.671 60.000 0.00 0.00 0.00 4.61
1976 2071 1.070105 TGGGCTACCGTGTGTTCAC 59.930 57.895 0.00 0.00 40.75 3.18
1990 2085 4.984161 GTGTGTTCACTTTTCCATGGATTG 59.016 41.667 17.06 11.15 40.98 2.67
2042 2137 2.350964 GCACGTAGCTAGCTAGATCACC 60.351 54.545 24.78 10.84 41.15 4.02
2049 2144 2.094957 GCTAGCTAGATCACCCGATGTC 60.095 54.545 25.15 0.00 29.66 3.06
2050 2145 2.373335 AGCTAGATCACCCGATGTCT 57.627 50.000 0.00 0.00 29.66 3.41
2052 2147 3.417101 AGCTAGATCACCCGATGTCTAG 58.583 50.000 0.00 14.60 39.53 2.43
2054 2149 2.373335 AGATCACCCGATGTCTAGCT 57.627 50.000 0.00 0.00 29.66 3.32
2055 2150 3.510531 AGATCACCCGATGTCTAGCTA 57.489 47.619 0.00 0.00 29.66 3.32
2056 2151 3.417101 AGATCACCCGATGTCTAGCTAG 58.583 50.000 15.01 15.01 29.66 3.42
2057 2152 3.073209 AGATCACCCGATGTCTAGCTAGA 59.927 47.826 19.72 19.72 29.66 2.43
2058 2153 3.510531 TCACCCGATGTCTAGCTAGAT 57.489 47.619 25.74 11.64 34.39 1.98
2059 2154 3.413327 TCACCCGATGTCTAGCTAGATC 58.587 50.000 25.74 18.47 34.39 2.75
2060 2155 3.149981 CACCCGATGTCTAGCTAGATCA 58.850 50.000 25.74 22.82 34.39 2.92
2061 2156 3.057876 CACCCGATGTCTAGCTAGATCAC 60.058 52.174 25.74 14.51 34.39 3.06
2062 2157 3.181438 ACCCGATGTCTAGCTAGATCACT 60.181 47.826 25.74 11.17 34.39 3.41
2063 2158 3.438781 CCCGATGTCTAGCTAGATCACTC 59.561 52.174 25.74 17.27 34.39 3.51
2064 2159 3.124466 CCGATGTCTAGCTAGATCACTCG 59.876 52.174 25.74 25.18 34.39 4.18
2065 2160 3.991121 CGATGTCTAGCTAGATCACTCGA 59.009 47.826 25.74 5.65 34.39 4.04
2066 2161 4.629634 CGATGTCTAGCTAGATCACTCGAT 59.370 45.833 25.74 10.42 34.39 3.59
2068 2163 4.709250 TGTCTAGCTAGATCACTCGATGT 58.291 43.478 25.74 0.00 34.39 3.06
2069 2164 5.855045 TGTCTAGCTAGATCACTCGATGTA 58.145 41.667 25.74 0.00 34.39 2.29
2129 2234 2.863739 CGTGCTCTGATCTCGTTTGTA 58.136 47.619 0.00 0.00 0.00 2.41
2178 2283 3.692593 GCCGGCTTTGTTTTAATCTCCTA 59.307 43.478 22.15 0.00 0.00 2.94
2201 2306 0.616395 TTCCCTACAGGCCGATGTGA 60.616 55.000 7.87 0.00 34.56 3.58
2222 2334 7.676004 TGTGATTTGACTCCAATTAGTACTCA 58.324 34.615 0.00 0.00 31.46 3.41
2224 2336 8.660373 GTGATTTGACTCCAATTAGTACTCAAG 58.340 37.037 0.00 0.00 31.46 3.02
2228 2340 4.833390 ACTCCAATTAGTACTCAAGTGGC 58.167 43.478 18.63 0.00 40.18 5.01
2230 2342 3.054655 TCCAATTAGTACTCAAGTGGCCC 60.055 47.826 18.63 0.00 40.18 5.80
2237 2349 2.861147 ACTCAAGTGGCCCTCTTTAC 57.139 50.000 0.00 0.00 0.00 2.01
2240 2352 2.039084 CTCAAGTGGCCCTCTTTACTGT 59.961 50.000 0.00 0.00 0.00 3.55
2242 2354 1.729586 AGTGGCCCTCTTTACTGTCA 58.270 50.000 0.00 0.00 0.00 3.58
2254 2366 5.582550 TCTTTACTGTCAGCGAGATGTATG 58.417 41.667 0.00 0.00 0.00 2.39
2273 2387 9.310716 GATGTATGTACCTTTGTTAACCTAGAC 57.689 37.037 2.48 0.00 0.00 2.59
2274 2388 8.426569 TGTATGTACCTTTGTTAACCTAGACT 57.573 34.615 2.48 0.00 0.00 3.24
2277 2391 8.890410 ATGTACCTTTGTTAACCTAGACTAGA 57.110 34.615 11.27 0.00 0.00 2.43
2278 2392 8.890410 TGTACCTTTGTTAACCTAGACTAGAT 57.110 34.615 11.27 2.39 0.00 1.98
2282 2396 8.756927 ACCTTTGTTAACCTAGACTAGATTACC 58.243 37.037 11.27 0.00 0.00 2.85
2320 2436 3.997064 ATGCTCCACGCGTGCTCTC 62.997 63.158 33.17 20.21 43.27 3.20
2327 2443 0.169230 CACGCGTGCTCTCTCTTACT 59.831 55.000 28.16 0.00 0.00 2.24
2335 2451 2.095008 TGCTCTCTCTTACTCGCACTTG 60.095 50.000 0.00 0.00 0.00 3.16
2336 2452 2.162608 GCTCTCTCTTACTCGCACTTGA 59.837 50.000 0.00 0.00 0.00 3.02
2337 2453 3.181491 GCTCTCTCTTACTCGCACTTGAT 60.181 47.826 0.00 0.00 0.00 2.57
2338 2454 4.035792 GCTCTCTCTTACTCGCACTTGATA 59.964 45.833 0.00 0.00 0.00 2.15
2339 2455 5.449314 GCTCTCTCTTACTCGCACTTGATAA 60.449 44.000 0.00 0.00 0.00 1.75
2340 2456 6.701145 TCTCTCTTACTCGCACTTGATAAT 57.299 37.500 0.00 0.00 0.00 1.28
2341 2457 7.520776 GCTCTCTCTTACTCGCACTTGATAATA 60.521 40.741 0.00 0.00 0.00 0.98
2342 2458 7.640852 TCTCTCTTACTCGCACTTGATAATAC 58.359 38.462 0.00 0.00 0.00 1.89
2343 2459 7.282450 TCTCTCTTACTCGCACTTGATAATACA 59.718 37.037 0.00 0.00 0.00 2.29
2344 2460 7.194278 TCTCTTACTCGCACTTGATAATACAC 58.806 38.462 0.00 0.00 0.00 2.90
2345 2461 7.067129 TCTCTTACTCGCACTTGATAATACACT 59.933 37.037 0.00 0.00 0.00 3.55
2346 2462 6.972901 TCTTACTCGCACTTGATAATACACTG 59.027 38.462 0.00 0.00 0.00 3.66
2347 2463 5.073311 ACTCGCACTTGATAATACACTGT 57.927 39.130 0.00 0.00 0.00 3.55
2348 2464 6.203808 ACTCGCACTTGATAATACACTGTA 57.796 37.500 0.00 0.00 0.00 2.74
2349 2465 6.034591 ACTCGCACTTGATAATACACTGTAC 58.965 40.000 0.00 0.00 0.00 2.90
2350 2466 5.956642 TCGCACTTGATAATACACTGTACA 58.043 37.500 0.00 0.00 0.00 2.90
2351 2467 6.569780 TCGCACTTGATAATACACTGTACAT 58.430 36.000 0.00 0.00 0.00 2.29
2352 2468 7.039270 TCGCACTTGATAATACACTGTACATT 58.961 34.615 0.00 0.00 0.00 2.71
2353 2469 7.547722 TCGCACTTGATAATACACTGTACATTT 59.452 33.333 0.00 0.00 0.00 2.32
2354 2470 8.175069 CGCACTTGATAATACACTGTACATTTT 58.825 33.333 0.00 0.00 0.00 1.82
2355 2471 9.840427 GCACTTGATAATACACTGTACATTTTT 57.160 29.630 0.00 0.00 0.00 1.94
2403 2519 1.065418 GGTTATGTGCAGTAGCCCAGT 60.065 52.381 0.00 0.00 41.13 4.00
2404 2520 2.618045 GGTTATGTGCAGTAGCCCAGTT 60.618 50.000 0.00 0.00 41.13 3.16
2405 2521 3.081804 GTTATGTGCAGTAGCCCAGTTT 58.918 45.455 0.00 0.00 41.13 2.66
2406 2522 2.292828 ATGTGCAGTAGCCCAGTTTT 57.707 45.000 0.00 0.00 41.13 2.43
2407 2523 2.065899 TGTGCAGTAGCCCAGTTTTT 57.934 45.000 0.00 0.00 41.13 1.94
2484 2600 6.579666 ATGTGTTCAGCATCAACAAATACT 57.420 33.333 0.00 0.00 35.53 2.12
2513 2629 3.266772 TCATAAACCATGGCACTTCCTCT 59.733 43.478 13.04 0.00 35.16 3.69
2516 2632 0.326264 ACCATGGCACTTCCTCTGTC 59.674 55.000 13.04 0.00 35.26 3.51
2531 2647 7.449086 ACTTCCTCTGTCCTAGTATAATGTAGC 59.551 40.741 0.00 0.00 0.00 3.58
2583 2699 9.956720 ACTTTACAAACTCTGATCAAATTTCTG 57.043 29.630 0.00 0.00 0.00 3.02
2761 2877 1.923864 CGCACACGCACTACATTATGA 59.076 47.619 0.00 0.00 38.40 2.15
2766 2882 5.265477 CACACGCACTACATTATGAAATGG 58.735 41.667 0.00 0.00 45.72 3.16
2777 2893 7.912056 ACATTATGAAATGGAGGATATGTCG 57.088 36.000 0.00 0.00 45.72 4.35
2783 2899 5.593909 TGAAATGGAGGATATGTCGCAAATT 59.406 36.000 0.00 0.00 0.00 1.82
2784 2900 6.770303 TGAAATGGAGGATATGTCGCAAATTA 59.230 34.615 0.00 0.00 0.00 1.40
2785 2901 7.448161 TGAAATGGAGGATATGTCGCAAATTAT 59.552 33.333 0.00 0.00 0.00 1.28
2787 2903 7.765695 ATGGAGGATATGTCGCAAATTATTT 57.234 32.000 0.00 0.00 0.00 1.40
2789 2905 7.648142 TGGAGGATATGTCGCAAATTATTTTC 58.352 34.615 0.00 0.00 0.00 2.29
2790 2906 7.084486 GGAGGATATGTCGCAAATTATTTTCC 58.916 38.462 0.00 0.00 0.00 3.13
2791 2907 7.255451 GGAGGATATGTCGCAAATTATTTTCCA 60.255 37.037 4.33 0.00 0.00 3.53
2792 2908 7.651808 AGGATATGTCGCAAATTATTTTCCAG 58.348 34.615 4.33 0.00 0.00 3.86
2794 2910 5.913137 ATGTCGCAAATTATTTTCCAGGA 57.087 34.783 0.00 0.00 0.00 3.86
2795 2911 5.713792 TGTCGCAAATTATTTTCCAGGAA 57.286 34.783 0.00 0.00 0.00 3.36
2796 2912 5.708948 TGTCGCAAATTATTTTCCAGGAAG 58.291 37.500 1.07 0.00 0.00 3.46
2797 2913 5.242838 TGTCGCAAATTATTTTCCAGGAAGT 59.757 36.000 1.07 0.00 0.00 3.01
2798 2914 6.431543 TGTCGCAAATTATTTTCCAGGAAGTA 59.568 34.615 1.07 0.00 0.00 2.24
2799 2915 7.122055 TGTCGCAAATTATTTTCCAGGAAGTAT 59.878 33.333 1.07 3.30 0.00 2.12
2800 2916 7.973944 GTCGCAAATTATTTTCCAGGAAGTATT 59.026 33.333 1.07 0.00 0.00 1.89
2801 2917 8.527810 TCGCAAATTATTTTCCAGGAAGTATTT 58.472 29.630 1.07 4.88 0.00 1.40
2802 2918 8.594687 CGCAAATTATTTTCCAGGAAGTATTTG 58.405 33.333 21.68 21.68 0.00 2.32
2803 2919 9.651913 GCAAATTATTTTCCAGGAAGTATTTGA 57.348 29.630 25.74 4.65 0.00 2.69
2812 2940 7.745620 TCCAGGAAGTATTTGAAAAGAGTTC 57.254 36.000 8.73 8.73 38.30 3.01
2826 2954 5.506686 AAAGAGTTCTCAACCTCTTTTGC 57.493 39.130 8.44 0.00 41.60 3.68
2837 2965 1.600413 CCTCTTTTGCGACAAACTGGC 60.600 52.381 4.80 0.00 0.00 4.85
2852 2983 2.356135 ACTGGCGTATTCATTGTCCAC 58.644 47.619 0.00 0.00 0.00 4.02
2853 2984 2.290008 ACTGGCGTATTCATTGTCCACA 60.290 45.455 0.00 0.00 0.00 4.17
2854 2985 2.945008 CTGGCGTATTCATTGTCCACAT 59.055 45.455 0.00 0.00 0.00 3.21
2855 2986 4.126437 CTGGCGTATTCATTGTCCACATA 58.874 43.478 0.00 0.00 0.00 2.29
2856 2987 4.713553 TGGCGTATTCATTGTCCACATAT 58.286 39.130 0.00 0.00 0.00 1.78
2857 2988 5.129634 TGGCGTATTCATTGTCCACATATT 58.870 37.500 0.00 0.00 0.00 1.28
2858 2989 6.292150 TGGCGTATTCATTGTCCACATATTA 58.708 36.000 0.00 0.00 0.00 0.98
2859 2990 6.426633 TGGCGTATTCATTGTCCACATATTAG 59.573 38.462 0.00 0.00 0.00 1.73
2860 2991 6.649141 GGCGTATTCATTGTCCACATATTAGA 59.351 38.462 0.00 0.00 0.00 2.10
2861 2992 7.148573 GGCGTATTCATTGTCCACATATTAGAG 60.149 40.741 0.00 0.00 0.00 2.43
2862 2993 7.622256 GCGTATTCATTGTCCACATATTAGAGC 60.622 40.741 0.00 0.00 0.00 4.09
2863 2994 7.384932 CGTATTCATTGTCCACATATTAGAGCA 59.615 37.037 0.00 0.00 0.00 4.26
2864 2995 6.925610 TTCATTGTCCACATATTAGAGCAC 57.074 37.500 0.00 0.00 0.00 4.40
2865 2996 6.239217 TCATTGTCCACATATTAGAGCACT 57.761 37.500 0.00 0.00 0.00 4.40
2866 2997 6.051074 TCATTGTCCACATATTAGAGCACTG 58.949 40.000 0.00 0.00 0.00 3.66
2867 2998 5.420725 TTGTCCACATATTAGAGCACTGT 57.579 39.130 0.00 0.00 0.00 3.55
2881 3012 1.987770 GCACTGTGATTTTGGATTGCG 59.012 47.619 12.86 0.00 0.00 4.85
2887 3018 5.105635 ACTGTGATTTTGGATTGCGATGATT 60.106 36.000 0.00 0.00 0.00 2.57
2921 3052 5.500234 AGAAAATAATGTGCTGCCAGACTA 58.500 37.500 0.00 0.00 0.00 2.59
2935 3066 4.173290 CCAGACTAGGCCTAGTAGAAGT 57.827 50.000 39.28 23.14 45.63 3.01
2958 3089 2.098614 TGTCAAATGTGTGTTGCTGGT 58.901 42.857 0.00 0.00 0.00 4.00
2959 3090 2.495270 TGTCAAATGTGTGTTGCTGGTT 59.505 40.909 0.00 0.00 0.00 3.67
2961 3092 2.100584 TCAAATGTGTGTTGCTGGTTCC 59.899 45.455 0.00 0.00 0.00 3.62
2962 3093 1.039856 AATGTGTGTTGCTGGTTCCC 58.960 50.000 0.00 0.00 0.00 3.97
2963 3094 0.827507 ATGTGTGTTGCTGGTTCCCC 60.828 55.000 0.00 0.00 0.00 4.81
2964 3095 2.197324 TGTGTTGCTGGTTCCCCC 59.803 61.111 0.00 0.00 0.00 5.40
2965 3096 2.983592 GTGTTGCTGGTTCCCCCG 60.984 66.667 0.00 0.00 35.15 5.73
2966 3097 4.966787 TGTTGCTGGTTCCCCCGC 62.967 66.667 0.00 0.00 35.15 6.13
2967 3098 4.966787 GTTGCTGGTTCCCCCGCA 62.967 66.667 0.00 0.00 39.74 5.69
2983 3114 1.814772 CGCAAATGGGGGCAAGTCAA 61.815 55.000 0.00 0.00 0.00 3.18
2984 3115 0.320683 GCAAATGGGGGCAAGTCAAC 60.321 55.000 0.00 0.00 0.00 3.18
2985 3116 1.047002 CAAATGGGGGCAAGTCAACA 58.953 50.000 0.00 0.00 0.00 3.33
2996 3127 2.286772 GCAAGTCAACAAACCGTGGTAG 60.287 50.000 0.00 0.00 0.00 3.18
2997 3128 2.249844 AGTCAACAAACCGTGGTAGG 57.750 50.000 0.00 0.00 37.30 3.18
2998 3129 1.764134 AGTCAACAAACCGTGGTAGGA 59.236 47.619 0.00 0.00 34.73 2.94
2999 3130 2.171027 AGTCAACAAACCGTGGTAGGAA 59.829 45.455 0.00 0.00 34.73 3.36
3000 3131 2.288729 GTCAACAAACCGTGGTAGGAAC 59.711 50.000 0.00 0.00 34.73 3.62
3001 3132 2.093075 TCAACAAACCGTGGTAGGAACA 60.093 45.455 0.00 0.00 34.73 3.18
3002 3133 2.249844 ACAAACCGTGGTAGGAACAG 57.750 50.000 0.00 0.00 34.73 3.16
3003 3134 1.202722 ACAAACCGTGGTAGGAACAGG 60.203 52.381 0.00 0.00 34.73 4.00
3004 3135 0.399075 AAACCGTGGTAGGAACAGGG 59.601 55.000 1.75 1.75 46.43 4.45
3005 3136 0.472352 AACCGTGGTAGGAACAGGGA 60.472 55.000 10.09 0.00 44.45 4.20
3006 3137 0.472352 ACCGTGGTAGGAACAGGGAA 60.472 55.000 10.09 0.00 44.45 3.97
3007 3138 0.688487 CCGTGGTAGGAACAGGGAAA 59.312 55.000 0.00 0.00 44.45 3.13
3008 3139 1.609841 CCGTGGTAGGAACAGGGAAAC 60.610 57.143 0.00 0.00 44.45 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.712425 ACTGGGTACGTGTCGCGC 62.712 66.667 0.00 0.00 46.11 6.86
66 67 2.244651 GCGCGTGGTGTGGGATATC 61.245 63.158 8.43 0.00 0.00 1.63
89 98 1.104577 GGTGTGCCGGGAAAAGTTCA 61.105 55.000 2.18 0.00 0.00 3.18
91 100 1.106944 CAGGTGTGCCGGGAAAAGTT 61.107 55.000 2.18 0.00 40.50 2.66
119 128 2.564975 GGACACGTCGACATCCGT 59.435 61.111 17.16 4.48 39.75 4.69
195 204 6.145371 GCTGCCATTTTTATCGTTCTTTTTCA 59.855 34.615 0.00 0.00 0.00 2.69
310 324 2.798689 CGTCCATCGCCGAAGAGA 59.201 61.111 0.00 0.00 0.00 3.10
337 351 3.986006 GAGGTGCCCACGTGTCGA 61.986 66.667 15.65 0.00 0.00 4.20
440 458 1.826385 AAAGCTTGGATCCTTCACGG 58.174 50.000 14.23 0.00 0.00 4.94
447 465 3.312697 GTCCGTATCAAAAGCTTGGATCC 59.687 47.826 15.05 4.20 33.01 3.36
475 493 5.924254 CCATACGTGTCCGTCAATATTGTAT 59.076 40.000 14.97 0.27 46.28 2.29
478 496 4.364860 TCCATACGTGTCCGTCAATATTG 58.635 43.478 9.29 9.29 46.28 1.90
670 691 3.819564 AAGATACGCAACTGGATAGCA 57.180 42.857 0.00 0.00 0.00 3.49
678 699 3.260884 TCTCCTCCAAAAGATACGCAACT 59.739 43.478 0.00 0.00 0.00 3.16
681 702 3.432186 CCATCTCCTCCAAAAGATACGCA 60.432 47.826 0.00 0.00 31.10 5.24
692 713 4.289410 TCTTGTCAATTTCCATCTCCTCCA 59.711 41.667 0.00 0.00 0.00 3.86
700 725 4.607239 AGAGCCATCTTGTCAATTTCCAT 58.393 39.130 0.00 0.00 28.57 3.41
718 747 1.367659 GATCACTGGACTGCAAGAGC 58.632 55.000 0.00 0.00 42.57 4.09
721 750 1.203287 TCTCGATCACTGGACTGCAAG 59.797 52.381 0.00 0.00 42.29 4.01
729 758 0.171231 TTGCTCGTCTCGATCACTGG 59.829 55.000 0.00 0.00 31.84 4.00
733 762 2.432206 TTTGTTGCTCGTCTCGATCA 57.568 45.000 0.00 0.00 34.61 2.92
734 763 3.999229 AATTTGTTGCTCGTCTCGATC 57.001 42.857 0.00 0.00 34.61 3.69
736 765 3.909430 AGTAATTTGTTGCTCGTCTCGA 58.091 40.909 0.00 0.00 0.00 4.04
741 770 4.857588 CGACTAGAGTAATTTGTTGCTCGT 59.142 41.667 0.00 0.00 38.46 4.18
743 772 5.169295 ACCGACTAGAGTAATTTGTTGCTC 58.831 41.667 0.00 0.00 34.47 4.26
751 780 2.617774 GCCGAGACCGACTAGAGTAATT 59.382 50.000 0.00 0.00 38.22 1.40
774 803 4.436998 GGACCACTCACGCTCCGG 62.437 72.222 0.00 0.00 0.00 5.14
777 806 0.946221 CAGTTGGACCACTCACGCTC 60.946 60.000 0.00 0.00 0.00 5.03
783 812 1.594331 GTTGGACAGTTGGACCACTC 58.406 55.000 0.00 0.00 33.20 3.51
794 823 3.353836 CCGTTGCCCGTTGGACAG 61.354 66.667 0.00 0.00 33.66 3.51
825 862 4.547367 GGGGCAGGATCGAACCGG 62.547 72.222 7.50 7.50 34.73 5.28
830 867 3.458163 GTGTCGGGGCAGGATCGA 61.458 66.667 0.00 0.00 0.00 3.59
940 994 1.201647 GTAGCGCTACTGGTGAGTGAA 59.798 52.381 34.70 1.56 33.21 3.18
942 996 0.811915 AGTAGCGCTACTGGTGAGTG 59.188 55.000 41.35 0.00 44.11 3.51
943 997 2.015587 GTAGTAGCGCTACTGGTGAGT 58.984 52.381 45.05 27.75 45.25 3.41
1863 1958 1.606350 CGTCGTGTTCGCCTTCACTC 61.606 60.000 0.00 0.00 36.96 3.51
1910 2005 4.796231 CGTCGCCGCTGCTACCTT 62.796 66.667 0.00 0.00 34.43 3.50
1959 2054 0.250166 AAGTGAACACACGGTAGCCC 60.250 55.000 7.68 0.00 39.25 5.19
1960 2055 1.589803 AAAGTGAACACACGGTAGCC 58.410 50.000 7.68 0.00 39.25 3.93
1972 2067 4.022068 GCTGACAATCCATGGAAAAGTGAA 60.022 41.667 20.67 7.32 0.00 3.18
1976 2071 3.760151 TCTGCTGACAATCCATGGAAAAG 59.240 43.478 20.67 13.84 0.00 2.27
2005 2100 3.807538 GCCGCACTGCTGATGGTG 61.808 66.667 0.00 0.00 36.62 4.17
2042 2137 3.124466 CGAGTGATCTAGCTAGACATCGG 59.876 52.174 25.52 9.88 34.72 4.18
2049 2144 6.816140 TGATCTACATCGAGTGATCTAGCTAG 59.184 42.308 15.01 15.01 36.54 3.42
2050 2145 6.702329 TGATCTACATCGAGTGATCTAGCTA 58.298 40.000 15.59 0.00 36.54 3.32
2052 2147 5.641636 TCTGATCTACATCGAGTGATCTAGC 59.358 44.000 15.59 0.00 36.54 3.42
2054 2149 6.014156 TCCTCTGATCTACATCGAGTGATCTA 60.014 42.308 15.59 7.57 36.54 1.98
2055 2150 5.003160 CCTCTGATCTACATCGAGTGATCT 58.997 45.833 15.59 0.00 36.54 2.75
2056 2151 5.000591 TCCTCTGATCTACATCGAGTGATC 58.999 45.833 10.71 10.71 36.33 2.92
2057 2152 4.979335 TCCTCTGATCTACATCGAGTGAT 58.021 43.478 0.00 0.00 32.33 3.06
2058 2153 4.141597 ACTCCTCTGATCTACATCGAGTGA 60.142 45.833 0.00 0.00 32.33 3.41
2059 2154 4.133820 ACTCCTCTGATCTACATCGAGTG 58.866 47.826 0.00 0.00 32.33 3.51
2060 2155 4.431416 ACTCCTCTGATCTACATCGAGT 57.569 45.455 0.00 0.00 32.33 4.18
2061 2156 5.547465 AGTACTCCTCTGATCTACATCGAG 58.453 45.833 0.00 0.00 33.23 4.04
2062 2157 5.554437 AGTACTCCTCTGATCTACATCGA 57.446 43.478 0.00 0.00 0.00 3.59
2063 2158 7.915293 ATAAGTACTCCTCTGATCTACATCG 57.085 40.000 0.00 0.00 0.00 3.84
2065 2160 9.875708 AGAAATAAGTACTCCTCTGATCTACAT 57.124 33.333 0.00 0.00 0.00 2.29
2069 2164 9.793259 CTCTAGAAATAAGTACTCCTCTGATCT 57.207 37.037 0.00 0.00 0.00 2.75
2129 2234 7.636150 AGCAGCAACAGAATATTAATGAACT 57.364 32.000 0.00 0.00 0.00 3.01
2178 2283 1.134098 CATCGGCCTGTAGGGAAACAT 60.134 52.381 0.00 0.00 37.23 2.71
2188 2293 1.003580 AGTCAAATCACATCGGCCTGT 59.996 47.619 0.00 0.00 0.00 4.00
2201 2306 7.607991 CCACTTGAGTACTAATTGGAGTCAAAT 59.392 37.037 0.00 0.00 36.36 2.32
2222 2334 2.039084 CTGACAGTAAAGAGGGCCACTT 59.961 50.000 10.68 10.68 0.00 3.16
2224 2336 1.946283 GCTGACAGTAAAGAGGGCCAC 60.946 57.143 6.18 0.00 0.00 5.01
2228 2340 1.819288 TCTCGCTGACAGTAAAGAGGG 59.181 52.381 3.99 0.00 0.00 4.30
2230 2342 4.103365 ACATCTCGCTGACAGTAAAGAG 57.897 45.455 3.99 8.34 0.00 2.85
2237 2349 3.316588 AGGTACATACATCTCGCTGACAG 59.683 47.826 0.00 0.00 0.00 3.51
2240 2352 4.159693 ACAAAGGTACATACATCTCGCTGA 59.840 41.667 0.00 0.00 0.00 4.26
2242 2354 4.737855 ACAAAGGTACATACATCTCGCT 57.262 40.909 0.00 0.00 0.00 4.93
2276 2390 9.944376 TTCCAAAGATAGCATACTATGGTAATC 57.056 33.333 11.14 9.46 45.19 1.75
2278 2392 9.725019 CATTCCAAAGATAGCATACTATGGTAA 57.275 33.333 11.14 0.00 45.19 2.85
2280 2394 6.656693 GCATTCCAAAGATAGCATACTATGGT 59.343 38.462 6.05 6.05 39.28 3.55
2281 2395 6.883217 AGCATTCCAAAGATAGCATACTATGG 59.117 38.462 0.00 0.00 39.28 2.74
2282 2396 7.065563 GGAGCATTCCAAAGATAGCATACTATG 59.934 40.741 0.00 0.00 43.45 2.23
2284 2398 6.467677 GGAGCATTCCAAAGATAGCATACTA 58.532 40.000 0.00 0.00 43.45 1.82
2320 2436 7.166638 CAGTGTATTATCAAGTGCGAGTAAGAG 59.833 40.741 0.00 0.00 0.00 2.85
2327 2443 5.956642 TGTACAGTGTATTATCAAGTGCGA 58.043 37.500 6.21 0.00 0.00 5.10
2412 2528 9.757227 CTGAATAAACCATGTTACTTTCCAAAA 57.243 29.630 0.00 0.00 0.00 2.44
2470 2586 6.709145 TGAAATTGCAGTATTTGTTGATGC 57.291 33.333 1.10 0.00 37.40 3.91
2475 2591 9.723601 ATGGTTTATGAAATTGCAGTATTTGTT 57.276 25.926 1.10 0.00 0.00 2.83
2484 2600 4.020396 AGTGCCATGGTTTATGAAATTGCA 60.020 37.500 14.67 0.00 39.21 4.08
2688 2804 6.839820 AAACTACGACCAAGTTTGTAGAAG 57.160 37.500 12.31 0.00 43.66 2.85
2741 2857 6.496883 CATTTCATAATGTAGTGCGTGTGCG 61.497 44.000 0.00 0.00 39.21 5.34
2742 2858 4.335082 TTTCATAATGTAGTGCGTGTGC 57.665 40.909 0.00 0.00 43.20 4.57
2743 2859 5.064579 TCCATTTCATAATGTAGTGCGTGTG 59.935 40.000 0.00 0.00 39.62 3.82
2744 2860 5.182487 TCCATTTCATAATGTAGTGCGTGT 58.818 37.500 0.00 0.00 39.62 4.49
2745 2861 5.277490 CCTCCATTTCATAATGTAGTGCGTG 60.277 44.000 0.00 0.00 39.62 5.34
2746 2862 4.816385 CCTCCATTTCATAATGTAGTGCGT 59.184 41.667 0.00 0.00 39.62 5.24
2747 2863 5.056480 TCCTCCATTTCATAATGTAGTGCG 58.944 41.667 0.00 0.00 39.62 5.34
2761 2877 7.765695 ATAATTTGCGACATATCCTCCATTT 57.234 32.000 0.00 0.00 0.00 2.32
2766 2882 7.648142 TGGAAAATAATTTGCGACATATCCTC 58.352 34.615 0.00 0.00 39.51 3.71
2771 2887 7.122055 ACTTCCTGGAAAATAATTTGCGACATA 59.878 33.333 10.86 0.00 39.51 2.29
2776 2892 8.594687 CAAATACTTCCTGGAAAATAATTTGCG 58.405 33.333 20.46 7.53 39.51 4.85
2777 2893 9.651913 TCAAATACTTCCTGGAAAATAATTTGC 57.348 29.630 23.73 0.00 37.38 3.68
2784 2900 9.147732 ACTCTTTTCAAATACTTCCTGGAAAAT 57.852 29.630 10.86 4.48 34.79 1.82
2785 2901 8.533569 ACTCTTTTCAAATACTTCCTGGAAAA 57.466 30.769 10.86 2.11 34.31 2.29
2787 2903 7.998964 AGAACTCTTTTCAAATACTTCCTGGAA 59.001 33.333 9.14 9.14 0.00 3.53
2789 2905 7.445402 TGAGAACTCTTTTCAAATACTTCCTGG 59.555 37.037 3.51 0.00 0.00 4.45
2790 2906 8.383318 TGAGAACTCTTTTCAAATACTTCCTG 57.617 34.615 3.51 0.00 0.00 3.86
2791 2907 8.841300 GTTGAGAACTCTTTTCAAATACTTCCT 58.159 33.333 3.51 0.00 33.10 3.36
2792 2908 8.076781 GGTTGAGAACTCTTTTCAAATACTTCC 58.923 37.037 3.51 0.00 33.10 3.46
2794 2910 8.753497 AGGTTGAGAACTCTTTTCAAATACTT 57.247 30.769 3.51 0.00 33.10 2.24
2795 2911 8.214364 AGAGGTTGAGAACTCTTTTCAAATACT 58.786 33.333 3.51 0.00 41.05 2.12
2796 2912 8.384607 AGAGGTTGAGAACTCTTTTCAAATAC 57.615 34.615 3.51 0.00 41.05 1.89
2807 2923 3.059529 GTCGCAAAAGAGGTTGAGAACTC 60.060 47.826 0.00 0.00 38.74 3.01
2808 2924 2.872858 GTCGCAAAAGAGGTTGAGAACT 59.127 45.455 0.00 0.00 38.74 3.01
2809 2925 2.612212 TGTCGCAAAAGAGGTTGAGAAC 59.388 45.455 0.00 0.00 38.74 3.01
2812 2940 3.065371 AGTTTGTCGCAAAAGAGGTTGAG 59.935 43.478 6.59 0.00 0.00 3.02
2826 2954 3.120338 ACAATGAATACGCCAGTTTGTCG 60.120 43.478 0.00 0.00 0.00 4.35
2837 2965 7.384932 TGCTCTAATATGTGGACAATGAATACG 59.615 37.037 0.00 0.00 0.00 3.06
2852 2983 7.558161 TCCAAAATCACAGTGCTCTAATATG 57.442 36.000 0.00 0.00 0.00 1.78
2853 2984 8.627403 CAATCCAAAATCACAGTGCTCTAATAT 58.373 33.333 0.00 0.00 0.00 1.28
2854 2985 7.415541 GCAATCCAAAATCACAGTGCTCTAATA 60.416 37.037 0.00 0.00 0.00 0.98
2855 2986 6.626623 GCAATCCAAAATCACAGTGCTCTAAT 60.627 38.462 0.00 0.00 0.00 1.73
2856 2987 5.335897 GCAATCCAAAATCACAGTGCTCTAA 60.336 40.000 0.00 0.00 0.00 2.10
2857 2988 4.156556 GCAATCCAAAATCACAGTGCTCTA 59.843 41.667 0.00 0.00 0.00 2.43
2858 2989 3.057033 GCAATCCAAAATCACAGTGCTCT 60.057 43.478 0.00 0.00 0.00 4.09
2859 2990 3.248266 GCAATCCAAAATCACAGTGCTC 58.752 45.455 0.00 0.00 0.00 4.26
2860 2991 2.352030 CGCAATCCAAAATCACAGTGCT 60.352 45.455 0.00 0.00 0.00 4.40
2861 2992 1.987770 CGCAATCCAAAATCACAGTGC 59.012 47.619 0.00 0.00 0.00 4.40
2862 2993 3.557577 TCGCAATCCAAAATCACAGTG 57.442 42.857 0.00 0.00 0.00 3.66
2863 2994 3.758023 TCATCGCAATCCAAAATCACAGT 59.242 39.130 0.00 0.00 0.00 3.55
2864 2995 4.359971 TCATCGCAATCCAAAATCACAG 57.640 40.909 0.00 0.00 0.00 3.66
2865 2996 4.987408 ATCATCGCAATCCAAAATCACA 57.013 36.364 0.00 0.00 0.00 3.58
2866 2997 6.651755 AAAATCATCGCAATCCAAAATCAC 57.348 33.333 0.00 0.00 0.00 3.06
2892 3023 9.791801 TCTGGCAGCACATTATTTTCTTATATA 57.208 29.630 10.34 0.00 0.00 0.86
2893 3024 8.571336 GTCTGGCAGCACATTATTTTCTTATAT 58.429 33.333 10.34 0.00 0.00 0.86
2895 3026 6.604795 AGTCTGGCAGCACATTATTTTCTTAT 59.395 34.615 10.34 0.00 0.00 1.73
2896 3027 5.945784 AGTCTGGCAGCACATTATTTTCTTA 59.054 36.000 10.34 0.00 0.00 2.10
2897 3028 4.768968 AGTCTGGCAGCACATTATTTTCTT 59.231 37.500 10.34 0.00 0.00 2.52
2899 3030 4.708726 AGTCTGGCAGCACATTATTTTC 57.291 40.909 10.34 0.00 0.00 2.29
2904 3035 2.988010 CCTAGTCTGGCAGCACATTA 57.012 50.000 10.34 0.00 0.00 1.90
2921 3052 3.507411 TGACACAACTTCTACTAGGCCT 58.493 45.455 11.78 11.78 0.00 5.19
2934 3065 3.304026 CAGCAACACACATTTGACACAAC 59.696 43.478 0.00 0.00 0.00 3.32
2935 3066 3.509740 CAGCAACACACATTTGACACAA 58.490 40.909 0.00 0.00 0.00 3.33
2962 3093 3.773404 CTTGCCCCCATTTGCGGG 61.773 66.667 0.00 0.00 46.94 6.13
2963 3094 2.996734 ACTTGCCCCCATTTGCGG 60.997 61.111 0.00 0.00 0.00 5.69
2964 3095 1.814772 TTGACTTGCCCCCATTTGCG 61.815 55.000 0.00 0.00 0.00 4.85
2965 3096 0.320683 GTTGACTTGCCCCCATTTGC 60.321 55.000 0.00 0.00 0.00 3.68
2966 3097 1.047002 TGTTGACTTGCCCCCATTTG 58.953 50.000 0.00 0.00 0.00 2.32
2967 3098 1.799933 TTGTTGACTTGCCCCCATTT 58.200 45.000 0.00 0.00 0.00 2.32
2975 3106 0.454196 ACCACGGTTTGTTGACTTGC 59.546 50.000 0.00 0.00 0.00 4.01
2983 3114 1.202722 CCTGTTCCTACCACGGTTTGT 60.203 52.381 0.00 0.00 0.00 2.83
2984 3115 1.519408 CCTGTTCCTACCACGGTTTG 58.481 55.000 0.00 0.00 0.00 2.93
2985 3116 0.399075 CCCTGTTCCTACCACGGTTT 59.601 55.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.