Multiple sequence alignment - TraesCS3A01G330900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G330900 chr3A 100.000 5001 0 0 1 5001 575490090 575495090 0.000000e+00 9236.0
1 TraesCS3A01G330900 chr3B 88.892 4204 252 93 881 4999 572742183 572746256 0.000000e+00 4977.0
2 TraesCS3A01G330900 chr3B 80.826 339 42 11 1 337 572741506 572741823 1.390000e-60 244.0
3 TraesCS3A01G330900 chr3B 77.143 280 27 18 604 853 572741837 572742109 1.460000e-25 128.0
4 TraesCS3A01G330900 chr3D 92.767 3166 172 33 921 4059 437485474 437488609 0.000000e+00 4525.0
5 TraesCS3A01G330900 chr3D 90.351 798 26 23 4234 4996 437489025 437489806 0.000000e+00 1000.0
6 TraesCS3A01G330900 chr3D 94.388 196 10 1 1 196 437480785 437480979 2.930000e-77 300.0
7 TraesCS3A01G330900 chr3D 98.667 75 1 0 4018 4092 437488608 437488682 3.140000e-27 134.0
8 TraesCS3A01G330900 chr6B 91.484 1820 125 15 1852 3667 711626624 711624831 0.000000e+00 2475.0
9 TraesCS3A01G330900 chr6B 91.210 785 64 5 2899 3681 711514670 711513889 0.000000e+00 1062.0
10 TraesCS3A01G330900 chr6B 90.191 785 72 5 2899 3681 711517361 711516580 0.000000e+00 1018.0
11 TraesCS3A01G330900 chr6B 90.191 785 71 6 2899 3681 711518344 711517564 0.000000e+00 1018.0
12 TraesCS3A01G330900 chr6B 90.231 778 71 5 2899 3674 711515654 711514880 0.000000e+00 1011.0
13 TraesCS3A01G330900 chr6B 90.064 785 71 7 2899 3681 711521292 711520513 0.000000e+00 1011.0
14 TraesCS3A01G330900 chr6B 90.090 777 73 3 2899 3673 711512592 711511818 0.000000e+00 1005.0
15 TraesCS3A01G330900 chr6B 78.884 251 48 4 349 596 128093095 128093343 1.110000e-36 165.0
16 TraesCS3A01G330900 chr6B 76.538 260 56 4 349 605 667945718 667945461 2.430000e-28 137.0
17 TraesCS3A01G330900 chr2D 83.019 265 36 6 351 610 123196607 123196867 1.080000e-56 231.0
18 TraesCS3A01G330900 chr2D 78.884 251 47 6 349 596 463916869 463917116 1.110000e-36 165.0
19 TraesCS3A01G330900 chr2B 88.272 162 16 3 1987 2147 251374813 251374972 1.840000e-44 191.0
20 TraesCS3A01G330900 chr4B 88.462 156 18 0 1986 2141 78607920 78607765 6.610000e-44 189.0
21 TraesCS3A01G330900 chr4B 87.742 155 19 0 1987 2141 78607768 78607614 1.110000e-41 182.0
22 TraesCS3A01G330900 chr4B 92.683 41 1 1 712 752 548111680 548111718 1.940000e-04 58.4
23 TraesCS3A01G330900 chr5D 89.262 149 16 0 1987 2135 256749951 256749803 2.380000e-43 187.0
24 TraesCS3A01G330900 chr1B 88.608 158 12 3 1987 2140 246770984 246771139 2.380000e-43 187.0
25 TraesCS3A01G330900 chr7A 87.821 156 18 1 1987 2142 701301510 701301356 1.110000e-41 182.0
26 TraesCS3A01G330900 chr7B 78.846 260 49 6 349 605 154745850 154745594 2.390000e-38 171.0
27 TraesCS3A01G330900 chr5B 78.166 229 49 1 369 596 597196109 597195881 1.450000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G330900 chr3A 575490090 575495090 5000 False 9236.000000 9236 100.000000 1 5001 1 chr3A.!!$F1 5000
1 TraesCS3A01G330900 chr3B 572741506 572746256 4750 False 1783.000000 4977 82.287000 1 4999 3 chr3B.!!$F1 4998
2 TraesCS3A01G330900 chr3D 437485474 437489806 4332 False 1886.333333 4525 93.928333 921 4996 3 chr3D.!!$F2 4075
3 TraesCS3A01G330900 chr6B 711624831 711626624 1793 True 2475.000000 2475 91.484000 1852 3667 1 chr6B.!!$R2 1815
4 TraesCS3A01G330900 chr6B 711511818 711521292 9474 True 1020.833333 1062 90.329500 2899 3681 6 chr6B.!!$R3 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 588 0.033699 GAAATGCTCAGGGCCTCCTT 60.034 55.0 0.95 0.0 42.67 3.36 F
1360 1488 0.039618 ACTGTTGCCGAATTGGGGAT 59.960 50.0 8.73 0.0 38.63 3.85 F
1366 1494 1.108727 GCCGAATTGGGGATGCATGA 61.109 55.0 2.46 0.0 38.63 3.07 F
3283 10044 0.038744 ATGCAGCTTGGGCAAGTACT 59.961 50.0 0.87 0.0 45.60 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 1989 0.038021 TGCCTATGCTTTGCCTGTCA 59.962 50.0 0.00 0.0 38.71 3.58 R
3283 10044 0.623723 GGGATGGCCTTCCTTGTGTA 59.376 55.0 30.91 0.0 35.97 2.90 R
3298 10059 0.846870 GCCTAGGGCCAATAGGGGAT 60.847 60.0 26.49 0.0 44.06 3.85 R
4226 13302 0.042448 GACAACGCAGGAAACACGAC 60.042 55.0 0.00 0.0 36.22 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.919690 TCTTCACTCAACTGTTTACTTTCATG 58.080 34.615 0.00 0.00 0.00 3.07
37 38 8.796475 ACTGTTTACTTTCATGCAAGTTATCAT 58.204 29.630 15.92 1.77 38.07 2.45
42 43 7.093322 ACTTTCATGCAAGTTATCATTCTCC 57.907 36.000 4.80 0.00 32.81 3.71
43 44 5.739752 TTCATGCAAGTTATCATTCTCCG 57.260 39.130 0.00 0.00 0.00 4.63
121 122 7.561251 ACCTTAACAGTTGCCAAACTTAAAAT 58.439 30.769 0.00 0.00 44.47 1.82
135 136 8.147704 CCAAACTTAAAATTGACCATAACCACT 58.852 33.333 2.32 0.00 0.00 4.00
136 137 8.977505 CAAACTTAAAATTGACCATAACCACTG 58.022 33.333 0.00 0.00 0.00 3.66
137 138 8.472007 AACTTAAAATTGACCATAACCACTGA 57.528 30.769 0.00 0.00 0.00 3.41
138 139 8.110860 ACTTAAAATTGACCATAACCACTGAG 57.889 34.615 0.00 0.00 0.00 3.35
139 140 7.724061 ACTTAAAATTGACCATAACCACTGAGT 59.276 33.333 0.00 0.00 0.00 3.41
141 142 3.695830 TTGACCATAACCACTGAGTCC 57.304 47.619 0.00 0.00 0.00 3.85
142 143 1.906574 TGACCATAACCACTGAGTCCC 59.093 52.381 0.00 0.00 0.00 4.46
143 144 0.902531 ACCATAACCACTGAGTCCCG 59.097 55.000 0.00 0.00 0.00 5.14
144 145 0.178068 CCATAACCACTGAGTCCCGG 59.822 60.000 0.00 0.00 0.00 5.73
145 146 1.191535 CATAACCACTGAGTCCCGGA 58.808 55.000 0.73 0.00 0.00 5.14
146 147 1.134788 CATAACCACTGAGTCCCGGAC 60.135 57.143 9.81 9.81 0.00 4.79
147 148 0.901580 TAACCACTGAGTCCCGGACC 60.902 60.000 14.32 6.53 32.18 4.46
148 149 3.391382 CCACTGAGTCCCGGACCC 61.391 72.222 14.32 2.56 32.18 4.46
149 150 3.391382 CACTGAGTCCCGGACCCC 61.391 72.222 14.32 7.24 32.18 4.95
150 151 4.716977 ACTGAGTCCCGGACCCCC 62.717 72.222 14.32 4.76 32.18 5.40
151 152 4.400251 CTGAGTCCCGGACCCCCT 62.400 72.222 14.32 0.00 32.18 4.79
152 153 3.925914 CTGAGTCCCGGACCCCCTT 62.926 68.421 14.32 0.00 32.18 3.95
153 154 2.609921 GAGTCCCGGACCCCCTTT 60.610 66.667 14.32 0.00 32.18 3.11
154 155 1.306397 GAGTCCCGGACCCCCTTTA 60.306 63.158 14.32 0.00 32.18 1.85
155 156 0.911045 GAGTCCCGGACCCCCTTTAA 60.911 60.000 14.32 0.00 32.18 1.52
156 157 0.476219 AGTCCCGGACCCCCTTTAAA 60.476 55.000 14.32 0.00 32.18 1.52
157 158 0.405198 GTCCCGGACCCCCTTTAAAA 59.595 55.000 0.73 0.00 0.00 1.52
158 159 1.006281 GTCCCGGACCCCCTTTAAAAT 59.994 52.381 0.73 0.00 0.00 1.82
159 160 2.241941 GTCCCGGACCCCCTTTAAAATA 59.758 50.000 0.73 0.00 0.00 1.40
160 161 2.241941 TCCCGGACCCCCTTTAAAATAC 59.758 50.000 0.73 0.00 0.00 1.89
161 162 2.025131 CCCGGACCCCCTTTAAAATACA 60.025 50.000 0.73 0.00 0.00 2.29
162 163 3.563915 CCCGGACCCCCTTTAAAATACAA 60.564 47.826 0.73 0.00 0.00 2.41
163 164 4.087907 CCGGACCCCCTTTAAAATACAAA 58.912 43.478 0.00 0.00 0.00 2.83
164 165 4.712829 CCGGACCCCCTTTAAAATACAAAT 59.287 41.667 0.00 0.00 0.00 2.32
210 230 8.664211 ATTAAGAAAGTGAAAACGACTTCTCT 57.336 30.769 0.00 0.00 32.33 3.10
300 320 5.405935 TGTGTTCATGTCTACTATGTGCT 57.594 39.130 0.00 0.00 0.00 4.40
302 322 6.930731 TGTGTTCATGTCTACTATGTGCTTA 58.069 36.000 0.00 0.00 0.00 3.09
303 323 7.555965 TGTGTTCATGTCTACTATGTGCTTAT 58.444 34.615 0.00 0.00 0.00 1.73
318 338 9.317936 CTATGTGCTTATCAACTCTTCATAACA 57.682 33.333 0.00 0.00 0.00 2.41
328 348 9.736023 ATCAACTCTTCATAACAAAAAGAACAC 57.264 29.630 0.00 0.00 0.00 3.32
337 357 7.600375 TCATAACAAAAAGAACACTTTTGCACA 59.400 29.630 8.38 0.00 41.19 4.57
338 358 5.844301 ACAAAAAGAACACTTTTGCACAG 57.156 34.783 8.38 0.00 41.19 3.66
339 359 4.690280 ACAAAAAGAACACTTTTGCACAGG 59.310 37.500 8.38 0.00 41.19 4.00
340 360 4.799564 AAAAGAACACTTTTGCACAGGA 57.200 36.364 7.07 0.00 40.74 3.86
341 361 4.799564 AAAGAACACTTTTGCACAGGAA 57.200 36.364 0.00 0.00 30.87 3.36
345 365 1.136891 ACACTTTTGCACAGGAAAGGC 59.863 47.619 12.08 0.00 37.22 4.35
346 366 0.752658 ACTTTTGCACAGGAAAGGCC 59.247 50.000 12.08 0.00 37.22 5.19
347 367 0.752054 CTTTTGCACAGGAAAGGCCA 59.248 50.000 5.01 0.00 40.02 5.36
348 368 1.138661 CTTTTGCACAGGAAAGGCCAA 59.861 47.619 5.01 0.00 40.02 4.52
349 369 1.422531 TTTGCACAGGAAAGGCCAAT 58.577 45.000 5.01 0.00 40.02 3.16
351 371 1.422531 TGCACAGGAAAGGCCAATTT 58.577 45.000 5.01 0.00 40.02 1.82
352 372 1.767681 TGCACAGGAAAGGCCAATTTT 59.232 42.857 5.01 0.00 40.02 1.82
402 422 8.621286 AGTCAAAAACAAGATTCTTACAATCGT 58.379 29.630 0.00 0.00 0.00 3.73
403 423 9.233232 GTCAAAAACAAGATTCTTACAATCGTT 57.767 29.630 0.00 0.00 0.00 3.85
404 424 9.445786 TCAAAAACAAGATTCTTACAATCGTTC 57.554 29.630 0.00 0.00 0.00 3.95
405 425 9.232082 CAAAAACAAGATTCTTACAATCGTTCA 57.768 29.630 0.00 0.00 0.00 3.18
406 426 9.965824 AAAAACAAGATTCTTACAATCGTTCAT 57.034 25.926 0.00 0.00 0.00 2.57
407 427 9.965824 AAAACAAGATTCTTACAATCGTTCATT 57.034 25.926 0.00 0.00 0.00 2.57
410 430 9.214957 ACAAGATTCTTACAATCGTTCATTACA 57.785 29.630 0.00 0.00 0.00 2.41
418 438 9.262472 CTTACAATCGTTCATTACAAAAGTAGC 57.738 33.333 0.00 0.00 0.00 3.58
419 439 6.608610 ACAATCGTTCATTACAAAAGTAGCC 58.391 36.000 0.00 0.00 0.00 3.93
420 440 6.205853 ACAATCGTTCATTACAAAAGTAGCCA 59.794 34.615 0.00 0.00 0.00 4.75
421 441 5.600908 TCGTTCATTACAAAAGTAGCCAC 57.399 39.130 0.00 0.00 0.00 5.01
422 442 4.150980 TCGTTCATTACAAAAGTAGCCACG 59.849 41.667 0.00 0.00 0.00 4.94
423 443 4.156182 GTTCATTACAAAAGTAGCCACGC 58.844 43.478 0.00 0.00 0.00 5.34
424 444 3.403968 TCATTACAAAAGTAGCCACGCA 58.596 40.909 0.00 0.00 0.00 5.24
425 445 3.815962 TCATTACAAAAGTAGCCACGCAA 59.184 39.130 0.00 0.00 0.00 4.85
427 447 1.961793 ACAAAAGTAGCCACGCAAGA 58.038 45.000 0.00 0.00 43.62 3.02
428 448 1.602377 ACAAAAGTAGCCACGCAAGAC 59.398 47.619 0.00 0.00 43.62 3.01
442 462 3.984018 GCAAGACGAAACGCTATTACA 57.016 42.857 0.00 0.00 0.00 2.41
443 463 4.516092 GCAAGACGAAACGCTATTACAT 57.484 40.909 0.00 0.00 0.00 2.29
444 464 5.630896 GCAAGACGAAACGCTATTACATA 57.369 39.130 0.00 0.00 0.00 2.29
445 465 6.028040 GCAAGACGAAACGCTATTACATAA 57.972 37.500 0.00 0.00 0.00 1.90
446 466 6.471839 GCAAGACGAAACGCTATTACATAAA 58.528 36.000 0.00 0.00 0.00 1.40
447 467 6.623743 GCAAGACGAAACGCTATTACATAAAG 59.376 38.462 0.00 0.00 0.00 1.85
448 468 6.270096 AGACGAAACGCTATTACATAAAGC 57.730 37.500 0.00 0.00 0.00 3.51
449 469 5.808540 AGACGAAACGCTATTACATAAAGCA 59.191 36.000 0.00 0.00 35.98 3.91
450 470 5.792631 ACGAAACGCTATTACATAAAGCAC 58.207 37.500 0.00 0.00 35.98 4.40
451 471 5.195379 CGAAACGCTATTACATAAAGCACC 58.805 41.667 0.00 0.00 35.98 5.01
452 472 5.220510 CGAAACGCTATTACATAAAGCACCA 60.221 40.000 0.00 0.00 35.98 4.17
453 473 6.511121 CGAAACGCTATTACATAAAGCACCAT 60.511 38.462 0.00 0.00 35.98 3.55
454 474 5.924475 ACGCTATTACATAAAGCACCATC 57.076 39.130 0.00 0.00 35.98 3.51
455 475 4.447724 ACGCTATTACATAAAGCACCATCG 59.552 41.667 0.00 0.00 35.98 3.84
456 476 4.143115 CGCTATTACATAAAGCACCATCGG 60.143 45.833 0.00 0.00 35.98 4.18
457 477 4.755123 GCTATTACATAAAGCACCATCGGT 59.245 41.667 0.00 0.00 36.26 4.69
458 478 5.107065 GCTATTACATAAAGCACCATCGGTC 60.107 44.000 0.00 0.00 36.26 4.79
459 479 2.038387 ACATAAAGCACCATCGGTCC 57.962 50.000 0.00 0.00 31.02 4.46
460 480 1.559682 ACATAAAGCACCATCGGTCCT 59.440 47.619 0.00 0.00 31.02 3.85
461 481 1.942657 CATAAAGCACCATCGGTCCTG 59.057 52.381 0.00 0.00 31.02 3.86
462 482 0.392461 TAAAGCACCATCGGTCCTGC 60.392 55.000 0.00 0.00 31.02 4.85
463 483 2.129555 AAAGCACCATCGGTCCTGCT 62.130 55.000 0.00 0.00 34.60 4.24
464 484 1.264749 AAGCACCATCGGTCCTGCTA 61.265 55.000 3.17 0.00 32.47 3.49
465 485 1.220749 GCACCATCGGTCCTGCTAA 59.779 57.895 0.00 0.00 31.02 3.09
466 486 1.090052 GCACCATCGGTCCTGCTAAC 61.090 60.000 0.00 0.00 31.02 2.34
467 487 0.249120 CACCATCGGTCCTGCTAACA 59.751 55.000 0.00 0.00 31.02 2.41
468 488 0.981183 ACCATCGGTCCTGCTAACAA 59.019 50.000 0.00 0.00 0.00 2.83
469 489 1.349688 ACCATCGGTCCTGCTAACAAA 59.650 47.619 0.00 0.00 0.00 2.83
470 490 2.224670 ACCATCGGTCCTGCTAACAAAA 60.225 45.455 0.00 0.00 0.00 2.44
471 491 2.161609 CCATCGGTCCTGCTAACAAAAC 59.838 50.000 0.00 0.00 0.00 2.43
472 492 2.922740 TCGGTCCTGCTAACAAAACT 57.077 45.000 0.00 0.00 0.00 2.66
473 493 4.250464 CATCGGTCCTGCTAACAAAACTA 58.750 43.478 0.00 0.00 0.00 2.24
474 494 4.339872 TCGGTCCTGCTAACAAAACTAA 57.660 40.909 0.00 0.00 0.00 2.24
475 495 4.706035 TCGGTCCTGCTAACAAAACTAAA 58.294 39.130 0.00 0.00 0.00 1.85
476 496 4.512571 TCGGTCCTGCTAACAAAACTAAAC 59.487 41.667 0.00 0.00 0.00 2.01
477 497 4.514066 CGGTCCTGCTAACAAAACTAAACT 59.486 41.667 0.00 0.00 0.00 2.66
478 498 5.008316 CGGTCCTGCTAACAAAACTAAACTT 59.992 40.000 0.00 0.00 0.00 2.66
479 499 6.203338 CGGTCCTGCTAACAAAACTAAACTTA 59.797 38.462 0.00 0.00 0.00 2.24
480 500 7.358066 GGTCCTGCTAACAAAACTAAACTTAC 58.642 38.462 0.00 0.00 0.00 2.34
481 501 7.358066 GTCCTGCTAACAAAACTAAACTTACC 58.642 38.462 0.00 0.00 0.00 2.85
482 502 7.012610 GTCCTGCTAACAAAACTAAACTTACCA 59.987 37.037 0.00 0.00 0.00 3.25
483 503 7.556996 TCCTGCTAACAAAACTAAACTTACCAA 59.443 33.333 0.00 0.00 0.00 3.67
484 504 8.357402 CCTGCTAACAAAACTAAACTTACCAAT 58.643 33.333 0.00 0.00 0.00 3.16
485 505 9.394477 CTGCTAACAAAACTAAACTTACCAATC 57.606 33.333 0.00 0.00 0.00 2.67
486 506 9.127277 TGCTAACAAAACTAAACTTACCAATCT 57.873 29.630 0.00 0.00 0.00 2.40
487 507 9.608617 GCTAACAAAACTAAACTTACCAATCTC 57.391 33.333 0.00 0.00 0.00 2.75
488 508 9.807386 CTAACAAAACTAAACTTACCAATCTCG 57.193 33.333 0.00 0.00 0.00 4.04
489 509 7.797038 ACAAAACTAAACTTACCAATCTCGT 57.203 32.000 0.00 0.00 0.00 4.18
490 510 7.636326 ACAAAACTAAACTTACCAATCTCGTG 58.364 34.615 0.00 0.00 0.00 4.35
491 511 5.857822 AACTAAACTTACCAATCTCGTGC 57.142 39.130 0.00 0.00 0.00 5.34
492 512 4.890088 ACTAAACTTACCAATCTCGTGCA 58.110 39.130 0.00 0.00 0.00 4.57
493 513 4.689345 ACTAAACTTACCAATCTCGTGCAC 59.311 41.667 6.82 6.82 0.00 4.57
494 514 2.831685 ACTTACCAATCTCGTGCACA 57.168 45.000 18.64 3.15 0.00 4.57
495 515 3.120321 ACTTACCAATCTCGTGCACAA 57.880 42.857 18.64 0.00 0.00 3.33
496 516 2.806244 ACTTACCAATCTCGTGCACAAC 59.194 45.455 18.64 0.00 0.00 3.32
497 517 1.803334 TACCAATCTCGTGCACAACC 58.197 50.000 18.64 0.00 0.00 3.77
498 518 0.889186 ACCAATCTCGTGCACAACCC 60.889 55.000 18.64 0.00 0.00 4.11
499 519 0.606401 CCAATCTCGTGCACAACCCT 60.606 55.000 18.64 0.00 0.00 4.34
500 520 1.338674 CCAATCTCGTGCACAACCCTA 60.339 52.381 18.64 0.00 0.00 3.53
501 521 2.632377 CAATCTCGTGCACAACCCTAT 58.368 47.619 18.64 0.00 0.00 2.57
502 522 3.009723 CAATCTCGTGCACAACCCTATT 58.990 45.455 18.64 4.52 0.00 1.73
503 523 4.188462 CAATCTCGTGCACAACCCTATTA 58.812 43.478 18.64 0.00 0.00 0.98
504 524 3.520290 TCTCGTGCACAACCCTATTAG 57.480 47.619 18.64 0.00 0.00 1.73
505 525 1.933853 CTCGTGCACAACCCTATTAGC 59.066 52.381 18.64 0.00 0.00 3.09
506 526 1.553248 TCGTGCACAACCCTATTAGCT 59.447 47.619 18.64 0.00 0.00 3.32
507 527 2.027561 TCGTGCACAACCCTATTAGCTT 60.028 45.455 18.64 0.00 0.00 3.74
508 528 2.095853 CGTGCACAACCCTATTAGCTTG 59.904 50.000 18.64 0.00 0.00 4.01
509 529 3.081804 GTGCACAACCCTATTAGCTTGT 58.918 45.455 13.17 0.00 0.00 3.16
510 530 3.127030 GTGCACAACCCTATTAGCTTGTC 59.873 47.826 13.17 1.57 0.00 3.18
511 531 3.009033 TGCACAACCCTATTAGCTTGTCT 59.991 43.478 0.00 0.00 0.00 3.41
512 532 4.224147 TGCACAACCCTATTAGCTTGTCTA 59.776 41.667 0.00 0.00 0.00 2.59
513 533 5.104527 TGCACAACCCTATTAGCTTGTCTAT 60.105 40.000 0.00 0.00 0.00 1.98
514 534 5.467063 GCACAACCCTATTAGCTTGTCTATC 59.533 44.000 0.00 0.00 0.00 2.08
515 535 6.582636 CACAACCCTATTAGCTTGTCTATCA 58.417 40.000 0.00 0.00 0.00 2.15
516 536 7.047891 CACAACCCTATTAGCTTGTCTATCAA 58.952 38.462 0.00 0.00 34.61 2.57
517 537 7.716998 CACAACCCTATTAGCTTGTCTATCAAT 59.283 37.037 0.00 0.00 35.35 2.57
518 538 7.934120 ACAACCCTATTAGCTTGTCTATCAATC 59.066 37.037 0.00 0.00 35.35 2.67
519 539 7.863901 ACCCTATTAGCTTGTCTATCAATCT 57.136 36.000 0.00 0.00 36.61 2.40
520 540 8.268878 ACCCTATTAGCTTGTCTATCAATCTT 57.731 34.615 0.00 0.00 34.80 2.40
521 541 8.371699 ACCCTATTAGCTTGTCTATCAATCTTC 58.628 37.037 0.00 0.00 34.80 2.87
522 542 8.370940 CCCTATTAGCTTGTCTATCAATCTTCA 58.629 37.037 0.00 0.00 34.80 3.02
523 543 9.202273 CCTATTAGCTTGTCTATCAATCTTCAC 57.798 37.037 0.00 0.00 34.80 3.18
524 544 7.706281 ATTAGCTTGTCTATCAATCTTCACG 57.294 36.000 0.00 0.00 34.80 4.35
525 545 5.330455 AGCTTGTCTATCAATCTTCACGA 57.670 39.130 0.00 0.00 35.35 4.35
526 546 5.911752 AGCTTGTCTATCAATCTTCACGAT 58.088 37.500 0.00 0.00 35.35 3.73
527 547 6.344500 AGCTTGTCTATCAATCTTCACGATT 58.656 36.000 0.00 0.00 43.03 3.34
528 548 6.820656 AGCTTGTCTATCAATCTTCACGATTT 59.179 34.615 0.00 0.00 40.33 2.17
529 549 7.335422 AGCTTGTCTATCAATCTTCACGATTTT 59.665 33.333 0.00 0.00 40.33 1.82
530 550 7.427606 GCTTGTCTATCAATCTTCACGATTTTG 59.572 37.037 0.00 0.00 40.33 2.44
531 551 8.546597 TTGTCTATCAATCTTCACGATTTTGA 57.453 30.769 0.00 0.00 40.33 2.69
532 552 8.546597 TGTCTATCAATCTTCACGATTTTGAA 57.453 30.769 0.00 0.00 40.33 2.69
533 553 8.998377 TGTCTATCAATCTTCACGATTTTGAAA 58.002 29.630 0.00 0.00 40.33 2.69
534 554 9.994432 GTCTATCAATCTTCACGATTTTGAAAT 57.006 29.630 0.00 0.00 40.33 2.17
536 556 9.443283 CTATCAATCTTCACGATTTTGAAATCC 57.557 33.333 10.06 0.00 40.33 3.01
537 557 7.452880 TCAATCTTCACGATTTTGAAATCCT 57.547 32.000 10.06 0.00 40.33 3.24
538 558 7.885297 TCAATCTTCACGATTTTGAAATCCTT 58.115 30.769 10.06 0.00 40.33 3.36
539 559 8.023128 TCAATCTTCACGATTTTGAAATCCTTC 58.977 33.333 10.06 0.00 40.33 3.46
540 560 5.927030 TCTTCACGATTTTGAAATCCTTCG 58.073 37.500 10.06 3.92 41.30 3.79
541 561 5.468746 TCTTCACGATTTTGAAATCCTTCGT 59.531 36.000 10.06 4.46 41.30 3.85
542 562 6.647481 TCTTCACGATTTTGAAATCCTTCGTA 59.353 34.615 10.06 0.00 41.30 3.43
543 563 6.788684 TCACGATTTTGAAATCCTTCGTAA 57.211 33.333 10.06 0.00 41.30 3.18
544 564 6.827641 TCACGATTTTGAAATCCTTCGTAAG 58.172 36.000 10.06 0.00 41.30 2.34
545 565 5.508224 CACGATTTTGAAATCCTTCGTAAGC 59.492 40.000 10.06 0.00 41.30 3.09
546 566 5.411669 ACGATTTTGAAATCCTTCGTAAGCT 59.588 36.000 10.06 0.00 41.30 3.74
547 567 6.072673 ACGATTTTGAAATCCTTCGTAAGCTT 60.073 34.615 3.48 3.48 41.30 3.74
548 568 6.466097 CGATTTTGAAATCCTTCGTAAGCTTC 59.534 38.462 0.00 0.00 41.30 3.86
549 569 4.921470 TTGAAATCCTTCGTAAGCTTCG 57.079 40.909 0.00 7.12 33.94 3.79
550 570 4.182693 TGAAATCCTTCGTAAGCTTCGA 57.817 40.909 0.00 9.60 33.94 3.71
551 571 4.562082 TGAAATCCTTCGTAAGCTTCGAA 58.438 39.130 23.05 23.05 43.41 3.71
552 572 4.992319 TGAAATCCTTCGTAAGCTTCGAAA 59.008 37.500 23.95 15.91 44.58 3.46
553 573 5.642063 TGAAATCCTTCGTAAGCTTCGAAAT 59.358 36.000 23.95 16.95 44.58 2.17
554 574 5.470845 AATCCTTCGTAAGCTTCGAAATG 57.529 39.130 23.95 19.60 44.58 2.32
555 575 2.671396 TCCTTCGTAAGCTTCGAAATGC 59.329 45.455 23.95 0.00 44.58 3.56
556 576 2.673368 CCTTCGTAAGCTTCGAAATGCT 59.327 45.455 23.95 6.11 44.58 3.79
557 577 3.242123 CCTTCGTAAGCTTCGAAATGCTC 60.242 47.826 23.95 1.13 44.58 4.26
558 578 2.954316 TCGTAAGCTTCGAAATGCTCA 58.046 42.857 11.82 0.00 38.75 4.26
559 579 2.923655 TCGTAAGCTTCGAAATGCTCAG 59.076 45.455 11.82 7.19 38.75 3.35
560 580 2.029728 CGTAAGCTTCGAAATGCTCAGG 59.970 50.000 11.82 0.68 38.75 3.86
561 581 1.457346 AAGCTTCGAAATGCTCAGGG 58.543 50.000 11.82 0.00 38.75 4.45
562 582 1.028868 AGCTTCGAAATGCTCAGGGC 61.029 55.000 6.11 0.00 42.22 5.19
563 583 1.997928 GCTTCGAAATGCTCAGGGCC 61.998 60.000 0.00 0.00 40.92 5.80
564 584 0.393537 CTTCGAAATGCTCAGGGCCT 60.394 55.000 0.00 0.00 40.92 5.19
565 585 0.392998 TTCGAAATGCTCAGGGCCTC 60.393 55.000 0.95 0.00 40.92 4.70
566 586 1.821332 CGAAATGCTCAGGGCCTCC 60.821 63.158 0.95 0.00 40.92 4.30
567 587 1.611965 GAAATGCTCAGGGCCTCCT 59.388 57.895 0.95 0.00 46.26 3.69
568 588 0.033699 GAAATGCTCAGGGCCTCCTT 60.034 55.000 0.95 0.00 42.67 3.36
569 589 0.411058 AAATGCTCAGGGCCTCCTTT 59.589 50.000 0.95 0.00 42.67 3.11
570 590 0.411058 AATGCTCAGGGCCTCCTTTT 59.589 50.000 0.95 0.00 42.67 2.27
571 591 0.411058 ATGCTCAGGGCCTCCTTTTT 59.589 50.000 0.95 0.00 42.67 1.94
572 592 0.251341 TGCTCAGGGCCTCCTTTTTC 60.251 55.000 0.95 0.00 42.67 2.29
573 593 0.251341 GCTCAGGGCCTCCTTTTTCA 60.251 55.000 0.95 0.00 42.67 2.69
574 594 1.831580 CTCAGGGCCTCCTTTTTCAG 58.168 55.000 0.95 0.00 42.67 3.02
575 595 1.352352 CTCAGGGCCTCCTTTTTCAGA 59.648 52.381 0.95 0.00 42.67 3.27
576 596 1.995542 TCAGGGCCTCCTTTTTCAGAT 59.004 47.619 0.95 0.00 42.67 2.90
577 597 2.025887 TCAGGGCCTCCTTTTTCAGATC 60.026 50.000 0.95 0.00 42.67 2.75
578 598 1.286257 AGGGCCTCCTTTTTCAGATCC 59.714 52.381 0.00 0.00 41.56 3.36
579 599 1.005924 GGGCCTCCTTTTTCAGATCCA 59.994 52.381 0.84 0.00 0.00 3.41
580 600 2.095461 GGCCTCCTTTTTCAGATCCAC 58.905 52.381 0.00 0.00 0.00 4.02
581 601 2.555227 GGCCTCCTTTTTCAGATCCACA 60.555 50.000 0.00 0.00 0.00 4.17
582 602 3.157087 GCCTCCTTTTTCAGATCCACAA 58.843 45.455 0.00 0.00 0.00 3.33
583 603 3.573967 GCCTCCTTTTTCAGATCCACAAA 59.426 43.478 0.00 0.00 0.00 2.83
584 604 4.039124 GCCTCCTTTTTCAGATCCACAAAA 59.961 41.667 0.00 0.00 0.00 2.44
585 605 5.776744 CCTCCTTTTTCAGATCCACAAAAG 58.223 41.667 11.39 11.39 36.42 2.27
586 606 5.536161 CCTCCTTTTTCAGATCCACAAAAGA 59.464 40.000 16.80 7.22 38.12 2.52
587 607 6.040842 CCTCCTTTTTCAGATCCACAAAAGAA 59.959 38.462 16.80 2.51 38.12 2.52
588 608 7.042797 TCCTTTTTCAGATCCACAAAAGAAG 57.957 36.000 16.80 6.60 38.12 2.85
589 609 6.833416 TCCTTTTTCAGATCCACAAAAGAAGA 59.167 34.615 16.80 8.15 38.12 2.87
590 610 6.920210 CCTTTTTCAGATCCACAAAAGAAGAC 59.080 38.462 16.80 0.00 38.12 3.01
591 611 6.391227 TTTTCAGATCCACAAAAGAAGACC 57.609 37.500 0.00 0.00 0.00 3.85
592 612 4.982241 TCAGATCCACAAAAGAAGACCT 57.018 40.909 0.00 0.00 0.00 3.85
593 613 4.645535 TCAGATCCACAAAAGAAGACCTG 58.354 43.478 0.00 0.00 0.00 4.00
594 614 4.103153 TCAGATCCACAAAAGAAGACCTGT 59.897 41.667 0.00 0.00 0.00 4.00
595 615 4.453819 CAGATCCACAAAAGAAGACCTGTC 59.546 45.833 0.00 0.00 0.00 3.51
596 616 2.833794 TCCACAAAAGAAGACCTGTCG 58.166 47.619 0.00 0.00 34.09 4.35
597 617 2.432874 TCCACAAAAGAAGACCTGTCGA 59.567 45.455 0.00 0.00 34.09 4.20
598 618 2.802816 CCACAAAAGAAGACCTGTCGAG 59.197 50.000 0.00 0.00 34.09 4.04
599 619 2.802816 CACAAAAGAAGACCTGTCGAGG 59.197 50.000 0.00 0.00 46.21 4.63
600 620 2.224305 ACAAAAGAAGACCTGTCGAGGG 60.224 50.000 3.11 3.11 44.84 4.30
601 621 2.011122 AAAGAAGACCTGTCGAGGGA 57.989 50.000 10.86 0.00 44.84 4.20
602 622 2.239681 AAGAAGACCTGTCGAGGGAT 57.760 50.000 10.86 0.00 44.84 3.85
603 623 2.239681 AGAAGACCTGTCGAGGGATT 57.760 50.000 10.86 5.60 44.84 3.01
604 624 2.104170 AGAAGACCTGTCGAGGGATTC 58.896 52.381 10.86 12.56 44.84 2.52
605 625 1.825474 GAAGACCTGTCGAGGGATTCA 59.175 52.381 10.86 0.00 44.84 2.57
606 626 2.166907 AGACCTGTCGAGGGATTCAT 57.833 50.000 10.86 0.00 44.84 2.57
607 627 2.472029 AGACCTGTCGAGGGATTCATT 58.528 47.619 10.86 0.00 44.84 2.57
608 628 2.840651 AGACCTGTCGAGGGATTCATTT 59.159 45.455 10.86 0.00 44.84 2.32
609 629 2.939103 GACCTGTCGAGGGATTCATTTG 59.061 50.000 10.86 0.00 44.84 2.32
610 630 1.672881 CCTGTCGAGGGATTCATTTGC 59.327 52.381 0.00 0.00 35.40 3.68
617 637 3.065371 CGAGGGATTCATTTGCTTGGTAC 59.935 47.826 0.00 0.00 0.00 3.34
626 646 8.907222 ATTCATTTGCTTGGTACTTCAAAAAT 57.093 26.923 0.00 0.00 32.97 1.82
732 767 1.078709 ATACACGCACATGCACTCAC 58.921 50.000 4.49 0.00 42.21 3.51
735 770 2.669229 CGCACATGCACTCACCCA 60.669 61.111 4.49 0.00 42.21 4.51
746 781 3.207677 CTCACCCATATGAGCGAGC 57.792 57.895 3.65 0.00 39.77 5.03
747 782 0.390492 CTCACCCATATGAGCGAGCA 59.610 55.000 3.65 0.00 39.77 4.26
755 790 3.431233 CCATATGAGCGAGCACATGTAAG 59.569 47.826 16.20 3.55 0.00 2.34
766 801 5.113502 AGCACATGTAAGCTCACTTTTTC 57.886 39.130 4.90 0.00 36.00 2.29
767 802 4.022849 AGCACATGTAAGCTCACTTTTTCC 60.023 41.667 4.90 0.00 36.00 3.13
768 803 4.798574 CACATGTAAGCTCACTTTTTCCC 58.201 43.478 0.00 0.00 37.33 3.97
770 805 3.876309 TGTAAGCTCACTTTTTCCCCT 57.124 42.857 0.00 0.00 37.33 4.79
772 807 3.137544 TGTAAGCTCACTTTTTCCCCTCA 59.862 43.478 0.00 0.00 37.33 3.86
773 808 3.532641 AAGCTCACTTTTTCCCCTCAT 57.467 42.857 0.00 0.00 29.41 2.90
775 810 1.821136 GCTCACTTTTTCCCCTCATGG 59.179 52.381 0.00 0.00 0.00 3.66
776 811 7.801590 TAAGCTCACTTTTTCCCCTCATGGG 62.802 48.000 0.00 0.00 45.91 4.00
797 843 2.159114 GCTGGAAACACAACACAACCAT 60.159 45.455 0.00 0.00 35.60 3.55
801 847 3.490761 GGAAACACAACACAACCATCCTG 60.491 47.826 0.00 0.00 0.00 3.86
802 848 2.435372 ACACAACACAACCATCCTGT 57.565 45.000 0.00 0.00 0.00 4.00
803 849 3.569194 ACACAACACAACCATCCTGTA 57.431 42.857 0.00 0.00 0.00 2.74
804 850 3.476552 ACACAACACAACCATCCTGTAG 58.523 45.455 0.00 0.00 0.00 2.74
805 851 3.118038 ACACAACACAACCATCCTGTAGT 60.118 43.478 0.00 0.00 0.00 2.73
806 852 3.882888 CACAACACAACCATCCTGTAGTT 59.117 43.478 0.00 0.00 0.00 2.24
818 865 5.760253 CCATCCTGTAGTTATCCAATCACAC 59.240 44.000 0.00 0.00 0.00 3.82
822 869 6.153170 TCCTGTAGTTATCCAATCACACGTTA 59.847 38.462 0.00 0.00 0.00 3.18
835 882 8.286800 CCAATCACACGTTAGTTCTTTTTATGA 58.713 33.333 0.00 0.00 0.00 2.15
839 886 8.332464 TCACACGTTAGTTCTTTTTATGACAAG 58.668 33.333 0.00 0.00 0.00 3.16
840 887 8.120465 CACACGTTAGTTCTTTTTATGACAAGT 58.880 33.333 0.00 0.00 0.00 3.16
996 1089 2.435938 CGCACGCCACCTAACCAT 60.436 61.111 0.00 0.00 0.00 3.55
997 1090 1.153529 CGCACGCCACCTAACCATA 60.154 57.895 0.00 0.00 0.00 2.74
1153 1246 2.997315 CACTCCTCGCCACTCCCA 60.997 66.667 0.00 0.00 0.00 4.37
1154 1247 2.681778 ACTCCTCGCCACTCCCAG 60.682 66.667 0.00 0.00 0.00 4.45
1234 1361 1.606885 TACCACCAACCCCGATCGAC 61.607 60.000 18.66 0.00 0.00 4.20
1239 1366 3.834799 AACCCCGATCGACGCTCC 61.835 66.667 18.66 0.00 41.07 4.70
1256 1383 2.798499 GCTCCTCGTGCTAATCGCTTAA 60.798 50.000 0.00 0.00 40.11 1.85
1323 1451 3.521796 GCGAGATTTGGGGGCTGC 61.522 66.667 0.00 0.00 0.00 5.25
1326 1454 2.361610 AGATTTGGGGGCTGCGTG 60.362 61.111 0.00 0.00 0.00 5.34
1327 1455 2.676471 GATTTGGGGGCTGCGTGT 60.676 61.111 0.00 0.00 0.00 4.49
1328 1456 2.990967 ATTTGGGGGCTGCGTGTG 60.991 61.111 0.00 0.00 0.00 3.82
1337 1465 3.279116 CTGCGTGTGGGGTGTGTG 61.279 66.667 0.00 0.00 0.00 3.82
1338 1466 4.866224 TGCGTGTGGGGTGTGTGG 62.866 66.667 0.00 0.00 0.00 4.17
1346 1474 2.763645 GGGGTGTGTGGGGACTGTT 61.764 63.158 0.00 0.00 0.00 3.16
1358 1486 1.595093 GGACTGTTGCCGAATTGGGG 61.595 60.000 8.73 0.00 38.63 4.96
1360 1488 0.039618 ACTGTTGCCGAATTGGGGAT 59.960 50.000 8.73 0.00 38.63 3.85
1366 1494 1.108727 GCCGAATTGGGGATGCATGA 61.109 55.000 2.46 0.00 38.63 3.07
1435 1563 1.205460 TTACCTTCCTGTCAGGGGCC 61.205 60.000 19.11 0.00 35.59 5.80
1470 1598 4.487714 TGTGAGATTATGGGTCCTGAAC 57.512 45.455 0.00 0.00 0.00 3.18
1548 1676 1.767289 TCTCTTTTGCACGAGACGAC 58.233 50.000 5.66 0.00 31.71 4.34
1616 1744 7.887495 CCCCTTTTAAAATTGGAATTGGATTCA 59.113 33.333 14.97 0.00 41.03 2.57
1626 1754 3.195610 GGAATTGGATTCAGGGGAACAAC 59.804 47.826 3.39 0.00 41.03 3.32
1638 1767 2.361119 GGGGAACAACTTGTTGAACCTC 59.639 50.000 18.82 15.77 41.28 3.85
1676 1805 4.753107 GGCAGTACTACTAACAAAAGCACA 59.247 41.667 0.00 0.00 0.00 4.57
1716 1845 2.949177 ACACATCCTGCACCACTTAA 57.051 45.000 0.00 0.00 0.00 1.85
1801 1930 2.247637 TCTGTTTCGTATCGCGTCTTG 58.752 47.619 5.77 0.00 42.13 3.02
1834 1963 3.006323 AGAATCATAGTGCGTCTGGATCC 59.994 47.826 4.20 4.20 0.00 3.36
1849 1978 2.512056 TGGATCCGGTGGATAATTGGTT 59.488 45.455 7.39 0.00 43.27 3.67
1857 1989 4.560513 CGGTGGATAATTGGTTGTTGCTTT 60.561 41.667 0.00 0.00 0.00 3.51
1961 2093 8.899427 ATTCTCAGTAATCATGTAAGTGGATG 57.101 34.615 0.00 0.00 0.00 3.51
1962 2094 7.660030 TCTCAGTAATCATGTAAGTGGATGA 57.340 36.000 0.00 0.00 33.20 2.92
2077 2211 3.627577 AGTGTGTTTGTTCGCTCATTTCT 59.372 39.130 0.00 0.00 0.00 2.52
2306 2440 9.817809 AAGATACTAATTCAATTCAGCGTAGAA 57.182 29.630 0.00 0.00 0.00 2.10
2412 2547 7.386851 TGTTATTTCCTTCCAGTCTACTGAAG 58.613 38.462 11.69 11.82 46.59 3.02
2425 2560 7.203910 CAGTCTACTGAAGAACAAACTGTACT 58.796 38.462 3.99 0.00 46.59 2.73
2433 2568 5.354842 AGAACAAACTGTACTATAGCCCC 57.645 43.478 0.00 0.00 0.00 5.80
2458 2593 6.587990 CCAAATGTTAACCGTAATGAAATGCA 59.412 34.615 2.48 0.00 0.00 3.96
2460 2595 5.950758 TGTTAACCGTAATGAAATGCAGT 57.049 34.783 2.48 0.00 0.00 4.40
2467 2602 3.848019 CGTAATGAAATGCAGTGACAAGC 59.152 43.478 0.00 0.00 0.00 4.01
2481 2617 4.748102 AGTGACAAGCAAGCATTTCAATTG 59.252 37.500 0.00 0.00 0.00 2.32
2529 2666 9.212687 CATTTTTAAAAAGCATTTCAGTGTGTG 57.787 29.630 17.72 3.74 37.28 3.82
2569 2706 5.762825 ATCACATGCAATTGGACTGATAC 57.237 39.130 16.13 0.00 0.00 2.24
2571 2708 5.008980 TCACATGCAATTGGACTGATACAA 58.991 37.500 7.72 0.00 31.44 2.41
2601 2738 9.383519 TCTCTTTTTATCATAGTGTAGCCAAAG 57.616 33.333 0.00 0.00 0.00 2.77
2678 2815 4.348168 ACAGTACCTTCTGACACCATTCTT 59.652 41.667 0.65 0.00 38.63 2.52
2892 3030 7.942894 AGTACAGTTTATCCTGCTTACCTTTTT 59.057 33.333 0.00 0.00 35.83 1.94
2895 3033 6.208599 CAGTTTATCCTGCTTACCTTTTTCCA 59.791 38.462 0.00 0.00 0.00 3.53
2903 3041 6.713450 CCTGCTTACCTTTTTCCACTTAGTAA 59.287 38.462 0.00 0.00 0.00 2.24
2941 6026 8.194104 AGTGTATGTTTTCAAATGTTGCTTGTA 58.806 29.630 0.00 0.00 0.00 2.41
3120 9881 5.748152 GCTTCATACAAGAGATCAGTGAGAC 59.252 44.000 0.00 0.00 0.00 3.36
3122 9883 6.201226 TCATACAAGAGATCAGTGAGACAC 57.799 41.667 0.00 0.00 34.10 3.67
3223 9984 4.819761 TCTGCCCTCATGCGTCGC 62.820 66.667 11.10 11.10 0.00 5.19
3283 10044 0.038744 ATGCAGCTTGGGCAAGTACT 59.961 50.000 0.87 0.00 45.60 2.73
3298 10059 2.616524 AGTACTACACAAGGAAGGCCA 58.383 47.619 5.01 0.00 36.29 5.36
3304 10065 1.544917 ACAAGGAAGGCCATCCCCT 60.545 57.895 23.39 11.17 40.59 4.79
3421 11291 1.810412 GCTGACCGTCCAAACTTCAGT 60.810 52.381 0.00 0.00 36.37 3.41
3520 12359 4.742201 CCGGCTCCACAGTCCGTG 62.742 72.222 0.00 0.00 45.92 4.94
3595 12434 3.535629 CTGCCCAGTCTGCACGGAA 62.536 63.158 0.00 0.00 34.46 4.30
3605 12444 3.882888 AGTCTGCACGGAAAGATTTGAAA 59.117 39.130 0.00 0.00 0.00 2.69
3748 12587 2.268076 GGACAACAATGCAGCCCGT 61.268 57.895 0.00 0.00 0.00 5.28
3766 12605 2.203422 CCACAACCTTCGGCCCAA 60.203 61.111 0.00 0.00 0.00 4.12
3795 12634 4.308458 CGTGAGCCGTGGGGTTGA 62.308 66.667 0.00 0.00 31.55 3.18
3825 12664 3.017581 GGACCCTGGGCCTGTCAT 61.018 66.667 14.08 0.00 0.00 3.06
3837 12676 2.434185 TGTCATGAGGAACGGCGC 60.434 61.111 6.90 0.00 0.00 6.53
3890 12729 4.099170 CGTTCGGGTCGTCGAGCT 62.099 66.667 22.48 0.00 40.42 4.09
3964 12803 0.033781 TTTACAACGACGACCCTGGG 59.966 55.000 12.28 12.28 0.00 4.45
4008 12847 1.341531 CTATGATCCGTGACACTCCCC 59.658 57.143 3.68 0.00 0.00 4.81
4009 12848 0.325671 ATGATCCGTGACACTCCCCT 60.326 55.000 3.68 0.00 0.00 4.79
4013 12855 2.262915 CGTGACACTCCCCTGAGC 59.737 66.667 3.68 0.00 42.74 4.26
4092 12976 1.232621 GGTGCCTGTAACGTTCACCC 61.233 60.000 20.09 7.12 40.84 4.61
4095 13008 1.310904 GCCTGTAACGTTCACCCAAA 58.689 50.000 2.82 0.00 0.00 3.28
4111 13028 2.300152 CCCAAACTGTCTACTGAGCAGA 59.700 50.000 4.21 0.00 34.60 4.26
4134 13051 6.074544 AGTGAACTACTCCGTATATTCTGC 57.925 41.667 0.00 0.00 33.17 4.26
4144 13061 8.004087 ACTCCGTATATTCTGCAGTAAAGTAA 57.996 34.615 14.67 0.00 0.00 2.24
4147 13064 8.472413 TCCGTATATTCTGCAGTAAAGTAAACT 58.528 33.333 14.67 0.00 0.00 2.66
4165 13233 8.614469 AGTAAACTAGTATATCGGACTGTACC 57.386 38.462 0.00 0.00 0.00 3.34
4166 13234 8.213679 AGTAAACTAGTATATCGGACTGTACCA 58.786 37.037 0.00 0.00 0.00 3.25
4195 13268 5.689383 TTCCAGCTGAACTTTGTATTGTC 57.311 39.130 17.39 0.00 0.00 3.18
4196 13269 4.713553 TCCAGCTGAACTTTGTATTGTCA 58.286 39.130 17.39 0.00 0.00 3.58
4197 13270 4.515191 TCCAGCTGAACTTTGTATTGTCAC 59.485 41.667 17.39 0.00 0.00 3.67
4198 13271 4.275689 CCAGCTGAACTTTGTATTGTCACA 59.724 41.667 17.39 0.00 0.00 3.58
4199 13272 5.207768 CAGCTGAACTTTGTATTGTCACAC 58.792 41.667 8.42 0.00 0.00 3.82
4202 13275 6.710295 AGCTGAACTTTGTATTGTCACACATA 59.290 34.615 0.00 0.00 0.00 2.29
4226 13302 3.868077 GGATCTGTGAAGAGTTTGATCGG 59.132 47.826 0.00 0.00 33.30 4.18
4227 13303 4.499183 GATCTGTGAAGAGTTTGATCGGT 58.501 43.478 0.00 0.00 0.00 4.69
4228 13304 3.914312 TCTGTGAAGAGTTTGATCGGTC 58.086 45.455 0.00 0.00 0.00 4.79
4230 13306 2.035449 TGTGAAGAGTTTGATCGGTCGT 59.965 45.455 0.00 0.00 0.00 4.34
4231 13307 2.408704 GTGAAGAGTTTGATCGGTCGTG 59.591 50.000 0.00 0.00 0.00 4.35
4232 13308 2.035449 TGAAGAGTTTGATCGGTCGTGT 59.965 45.455 0.00 0.00 0.00 4.49
4270 13357 0.531974 AAAGAAACGTGCCAGCGAGA 60.532 50.000 0.00 0.00 35.59 4.04
4271 13358 0.531974 AAGAAACGTGCCAGCGAGAA 60.532 50.000 0.00 0.00 35.59 2.87
4272 13359 0.946221 AGAAACGTGCCAGCGAGAAG 60.946 55.000 0.00 0.00 35.59 2.85
4273 13360 0.944311 GAAACGTGCCAGCGAGAAGA 60.944 55.000 0.00 0.00 35.59 2.87
4274 13361 0.946221 AAACGTGCCAGCGAGAAGAG 60.946 55.000 0.00 0.00 35.59 2.85
4307 13394 2.584835 TGCCATTTTGTCCTGCTACT 57.415 45.000 0.00 0.00 0.00 2.57
4311 13398 3.375299 GCCATTTTGTCCTGCTACTACTG 59.625 47.826 0.00 0.00 0.00 2.74
4312 13399 4.579869 CCATTTTGTCCTGCTACTACTGT 58.420 43.478 0.00 0.00 0.00 3.55
4313 13400 5.730550 CCATTTTGTCCTGCTACTACTGTA 58.269 41.667 0.00 0.00 0.00 2.74
4314 13401 5.812642 CCATTTTGTCCTGCTACTACTGTAG 59.187 44.000 13.13 13.13 46.59 2.74
4362 13449 6.015856 CCCAGACTTATCTATCTCACGTTCAT 60.016 42.308 0.00 0.00 32.25 2.57
4389 13476 1.156736 CCAAACACATGTCGAGGACC 58.843 55.000 0.00 0.00 0.00 4.46
4390 13477 1.270839 CCAAACACATGTCGAGGACCT 60.271 52.381 0.00 0.00 0.00 3.85
4391 13478 2.069273 CAAACACATGTCGAGGACCTC 58.931 52.381 11.87 11.87 0.00 3.85
4465 13575 3.132467 AGCTACCGTGTTATCTTCTTCCC 59.868 47.826 0.00 0.00 0.00 3.97
4774 13885 4.500116 GCACTCTCTCCGGGCGTC 62.500 72.222 0.00 0.00 0.00 5.19
4900 14028 2.069273 GACAACAGTCATGGACTTCCG 58.931 52.381 0.00 0.00 41.37 4.30
4945 14075 7.124573 AGCACCAAGTGTATCATCATAGTTA 57.875 36.000 0.00 0.00 35.75 2.24
4992 14122 5.213891 TCACTCTGAGAACAGCATTTGTA 57.786 39.130 12.44 0.00 43.17 2.41
4999 14129 5.252547 TGAGAACAGCATTTGTATTGGCTA 58.747 37.500 0.00 0.00 39.73 3.93
5000 14130 5.123820 TGAGAACAGCATTTGTATTGGCTAC 59.876 40.000 0.00 0.00 39.73 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.846248 AGAATGATAACTTGCATGAAAGTAAAC 57.154 29.630 19.72 13.17 39.48 2.01
23 24 5.268544 CAACGGAGAATGATAACTTGCATG 58.731 41.667 0.00 0.00 0.00 4.06
26 27 3.126858 TGCAACGGAGAATGATAACTTGC 59.873 43.478 0.00 0.00 0.00 4.01
37 38 6.837992 GTTGAATAAGTAATGCAACGGAGAA 58.162 36.000 0.00 0.00 42.89 2.87
92 93 4.951094 AGTTTGGCAACTGTTAAGGTAACA 59.049 37.500 0.00 1.22 45.66 2.41
93 94 5.509716 AGTTTGGCAACTGTTAAGGTAAC 57.490 39.130 0.00 0.00 42.05 2.50
94 95 7.642082 TTAAGTTTGGCAACTGTTAAGGTAA 57.358 32.000 0.00 0.00 42.89 2.85
95 96 7.642082 TTTAAGTTTGGCAACTGTTAAGGTA 57.358 32.000 0.00 0.00 42.89 3.08
96 97 6.532988 TTTAAGTTTGGCAACTGTTAAGGT 57.467 33.333 0.00 0.00 42.89 3.50
97 98 8.334632 CAATTTTAAGTTTGGCAACTGTTAAGG 58.665 33.333 0.00 0.00 42.89 2.69
98 99 9.092876 TCAATTTTAAGTTTGGCAACTGTTAAG 57.907 29.630 0.00 0.00 42.89 1.85
99 100 8.874816 GTCAATTTTAAGTTTGGCAACTGTTAA 58.125 29.630 0.00 1.68 42.89 2.01
100 101 7.492994 GGTCAATTTTAAGTTTGGCAACTGTTA 59.507 33.333 0.00 0.00 42.89 2.41
101 102 6.315144 GGTCAATTTTAAGTTTGGCAACTGTT 59.685 34.615 0.00 0.00 42.89 3.16
102 103 5.815222 GGTCAATTTTAAGTTTGGCAACTGT 59.185 36.000 0.00 0.00 42.89 3.55
103 104 5.814705 TGGTCAATTTTAAGTTTGGCAACTG 59.185 36.000 0.00 0.00 42.89 3.16
121 122 2.304761 GGGACTCAGTGGTTATGGTCAA 59.695 50.000 0.00 0.00 0.00 3.18
135 136 2.109494 TAAAGGGGGTCCGGGACTCA 62.109 60.000 27.49 4.58 34.18 3.41
136 137 0.911045 TTAAAGGGGGTCCGGGACTC 60.911 60.000 25.39 22.47 38.33 3.36
137 138 0.476219 TTTAAAGGGGGTCCGGGACT 60.476 55.000 25.39 8.26 38.33 3.85
138 139 0.405198 TTTTAAAGGGGGTCCGGGAC 59.595 55.000 19.06 19.06 38.33 4.46
139 140 1.385014 ATTTTAAAGGGGGTCCGGGA 58.615 50.000 0.00 0.00 38.33 5.14
141 142 3.369242 TGTATTTTAAAGGGGGTCCGG 57.631 47.619 0.00 0.00 38.33 5.14
142 143 5.419471 TGATTTGTATTTTAAAGGGGGTCCG 59.581 40.000 0.00 0.00 38.33 4.79
143 144 6.860790 TGATTTGTATTTTAAAGGGGGTCC 57.139 37.500 0.00 0.00 0.00 4.46
144 145 9.811995 GTTATGATTTGTATTTTAAAGGGGGTC 57.188 33.333 0.00 0.00 0.00 4.46
145 146 9.327731 TGTTATGATTTGTATTTTAAAGGGGGT 57.672 29.630 0.00 0.00 0.00 4.95
192 193 3.001330 CGCAAGAGAAGTCGTTTTCACTT 59.999 43.478 7.90 7.90 38.13 3.16
208 228 7.864882 TCAACAAATTTAATGTTCATCGCAAGA 59.135 29.630 0.00 0.00 44.94 3.02
210 230 7.936950 TCAACAAATTTAATGTTCATCGCAA 57.063 28.000 0.00 0.00 38.90 4.85
276 296 7.112452 AGCACATAGTAGACATGAACACATA 57.888 36.000 0.00 0.00 0.00 2.29
279 299 7.706607 TGATAAGCACATAGTAGACATGAACAC 59.293 37.037 0.00 0.00 0.00 3.32
280 300 7.781056 TGATAAGCACATAGTAGACATGAACA 58.219 34.615 0.00 0.00 0.00 3.18
302 322 9.736023 GTGTTCTTTTTGTTATGAAGAGTTGAT 57.264 29.630 0.00 0.00 31.67 2.57
303 323 8.956426 AGTGTTCTTTTTGTTATGAAGAGTTGA 58.044 29.630 0.00 0.00 31.67 3.18
328 348 0.752054 TGGCCTTTCCTGTGCAAAAG 59.248 50.000 3.32 2.22 35.26 2.27
376 396 8.621286 ACGATTGTAAGAATCTTGTTTTTGACT 58.379 29.630 5.64 0.00 0.00 3.41
377 397 8.782533 ACGATTGTAAGAATCTTGTTTTTGAC 57.217 30.769 5.64 0.00 0.00 3.18
378 398 9.445786 GAACGATTGTAAGAATCTTGTTTTTGA 57.554 29.630 5.64 0.00 0.00 2.69
379 399 9.232082 TGAACGATTGTAAGAATCTTGTTTTTG 57.768 29.630 5.64 0.00 0.00 2.44
380 400 9.965824 ATGAACGATTGTAAGAATCTTGTTTTT 57.034 25.926 5.64 0.00 0.00 1.94
381 401 9.965824 AATGAACGATTGTAAGAATCTTGTTTT 57.034 25.926 5.64 0.00 0.00 2.43
384 404 9.214957 TGTAATGAACGATTGTAAGAATCTTGT 57.785 29.630 5.64 0.00 0.00 3.16
392 412 9.262472 GCTACTTTTGTAATGAACGATTGTAAG 57.738 33.333 0.00 0.00 34.06 2.34
393 413 8.231837 GGCTACTTTTGTAATGAACGATTGTAA 58.768 33.333 0.00 0.00 34.06 2.41
394 414 7.388224 TGGCTACTTTTGTAATGAACGATTGTA 59.612 33.333 0.00 0.00 34.06 2.41
395 415 6.205853 TGGCTACTTTTGTAATGAACGATTGT 59.794 34.615 0.00 0.00 34.06 2.71
396 416 6.523201 GTGGCTACTTTTGTAATGAACGATTG 59.477 38.462 0.00 0.00 34.06 2.67
397 417 6.608610 GTGGCTACTTTTGTAATGAACGATT 58.391 36.000 0.00 0.00 34.06 3.34
398 418 5.163893 CGTGGCTACTTTTGTAATGAACGAT 60.164 40.000 0.00 0.00 33.38 3.73
399 419 4.150980 CGTGGCTACTTTTGTAATGAACGA 59.849 41.667 0.00 0.00 33.38 3.85
400 420 4.391358 CGTGGCTACTTTTGTAATGAACG 58.609 43.478 0.00 0.00 34.06 3.95
401 421 4.156182 GCGTGGCTACTTTTGTAATGAAC 58.844 43.478 0.00 0.00 34.06 3.18
402 422 3.815962 TGCGTGGCTACTTTTGTAATGAA 59.184 39.130 0.00 0.00 34.06 2.57
403 423 3.403968 TGCGTGGCTACTTTTGTAATGA 58.596 40.909 0.00 0.00 34.06 2.57
404 424 3.822594 TGCGTGGCTACTTTTGTAATG 57.177 42.857 0.00 0.00 34.06 1.90
405 425 4.069304 TCTTGCGTGGCTACTTTTGTAAT 58.931 39.130 0.00 0.00 34.06 1.89
406 426 3.249080 GTCTTGCGTGGCTACTTTTGTAA 59.751 43.478 0.00 0.00 34.06 2.41
407 427 2.803956 GTCTTGCGTGGCTACTTTTGTA 59.196 45.455 0.00 0.00 0.00 2.41
408 428 1.602377 GTCTTGCGTGGCTACTTTTGT 59.398 47.619 0.00 0.00 0.00 2.83
409 429 1.398451 CGTCTTGCGTGGCTACTTTTG 60.398 52.381 0.00 0.00 35.54 2.44
410 430 0.865769 CGTCTTGCGTGGCTACTTTT 59.134 50.000 0.00 0.00 35.54 2.27
411 431 0.032952 TCGTCTTGCGTGGCTACTTT 59.967 50.000 0.00 0.00 42.13 2.66
412 432 0.032952 TTCGTCTTGCGTGGCTACTT 59.967 50.000 0.00 0.00 42.13 2.24
413 433 0.032952 TTTCGTCTTGCGTGGCTACT 59.967 50.000 0.00 0.00 42.13 2.57
414 434 0.163146 GTTTCGTCTTGCGTGGCTAC 59.837 55.000 0.00 0.00 42.13 3.58
415 435 1.279527 CGTTTCGTCTTGCGTGGCTA 61.280 55.000 0.00 0.00 42.13 3.93
416 436 2.594962 CGTTTCGTCTTGCGTGGCT 61.595 57.895 0.00 0.00 42.13 4.75
417 437 2.127758 CGTTTCGTCTTGCGTGGC 60.128 61.111 0.00 0.00 42.13 5.01
418 438 1.279527 TAGCGTTTCGTCTTGCGTGG 61.280 55.000 0.00 0.00 42.13 4.94
419 439 0.713883 ATAGCGTTTCGTCTTGCGTG 59.286 50.000 0.00 0.00 42.13 5.34
420 440 1.425412 AATAGCGTTTCGTCTTGCGT 58.575 45.000 0.00 0.00 42.13 5.24
421 441 2.343246 TGTAATAGCGTTTCGTCTTGCG 59.657 45.455 0.00 0.00 43.01 4.85
422 442 3.984018 TGTAATAGCGTTTCGTCTTGC 57.016 42.857 0.00 0.00 0.00 4.01
423 443 6.623743 GCTTTATGTAATAGCGTTTCGTCTTG 59.376 38.462 0.00 0.00 0.00 3.02
424 444 6.311935 TGCTTTATGTAATAGCGTTTCGTCTT 59.688 34.615 0.00 0.00 37.73 3.01
425 445 5.808540 TGCTTTATGTAATAGCGTTTCGTCT 59.191 36.000 0.00 0.00 37.73 4.18
426 446 5.894807 GTGCTTTATGTAATAGCGTTTCGTC 59.105 40.000 0.00 0.00 37.73 4.20
427 447 5.220529 GGTGCTTTATGTAATAGCGTTTCGT 60.221 40.000 0.00 0.00 37.73 3.85
428 448 5.195379 GGTGCTTTATGTAATAGCGTTTCG 58.805 41.667 0.00 0.00 37.73 3.46
429 449 6.114221 TGGTGCTTTATGTAATAGCGTTTC 57.886 37.500 0.00 0.00 37.73 2.78
430 450 6.511121 CGATGGTGCTTTATGTAATAGCGTTT 60.511 38.462 0.00 0.00 37.73 3.60
431 451 5.050363 CGATGGTGCTTTATGTAATAGCGTT 60.050 40.000 0.00 0.00 37.73 4.84
432 452 4.447724 CGATGGTGCTTTATGTAATAGCGT 59.552 41.667 0.00 0.00 37.73 5.07
433 453 4.143115 CCGATGGTGCTTTATGTAATAGCG 60.143 45.833 0.00 0.00 37.73 4.26
434 454 4.755123 ACCGATGGTGCTTTATGTAATAGC 59.245 41.667 0.00 0.00 32.98 2.97
435 455 5.408604 GGACCGATGGTGCTTTATGTAATAG 59.591 44.000 0.00 0.00 40.95 1.73
436 456 5.302360 GGACCGATGGTGCTTTATGTAATA 58.698 41.667 0.00 0.00 40.95 0.98
437 457 4.134563 GGACCGATGGTGCTTTATGTAAT 58.865 43.478 0.00 0.00 40.95 1.89
438 458 3.537580 GGACCGATGGTGCTTTATGTAA 58.462 45.455 0.00 0.00 40.95 2.41
439 459 3.188159 GGACCGATGGTGCTTTATGTA 57.812 47.619 0.00 0.00 40.95 2.29
440 460 2.038387 GGACCGATGGTGCTTTATGT 57.962 50.000 0.00 0.00 40.95 2.29
447 467 1.090052 GTTAGCAGGACCGATGGTGC 61.090 60.000 0.00 0.00 44.57 5.01
448 468 0.249120 TGTTAGCAGGACCGATGGTG 59.751 55.000 0.00 0.00 35.25 4.17
449 469 0.981183 TTGTTAGCAGGACCGATGGT 59.019 50.000 0.00 0.00 39.44 3.55
450 470 2.107950 TTTGTTAGCAGGACCGATGG 57.892 50.000 0.00 0.00 0.00 3.51
451 471 3.074412 AGTTTTGTTAGCAGGACCGATG 58.926 45.455 0.00 0.00 0.00 3.84
452 472 3.418684 AGTTTTGTTAGCAGGACCGAT 57.581 42.857 0.00 0.00 0.00 4.18
453 473 2.922740 AGTTTTGTTAGCAGGACCGA 57.077 45.000 0.00 0.00 0.00 4.69
454 474 4.514066 AGTTTAGTTTTGTTAGCAGGACCG 59.486 41.667 0.00 0.00 0.00 4.79
455 475 6.387041 AAGTTTAGTTTTGTTAGCAGGACC 57.613 37.500 0.00 0.00 0.00 4.46
456 476 7.012610 TGGTAAGTTTAGTTTTGTTAGCAGGAC 59.987 37.037 0.00 0.00 30.03 3.85
457 477 7.055378 TGGTAAGTTTAGTTTTGTTAGCAGGA 58.945 34.615 0.00 0.00 30.03 3.86
458 478 7.266922 TGGTAAGTTTAGTTTTGTTAGCAGG 57.733 36.000 0.00 0.00 30.03 4.85
459 479 9.394477 GATTGGTAAGTTTAGTTTTGTTAGCAG 57.606 33.333 0.00 0.00 33.86 4.24
460 480 9.127277 AGATTGGTAAGTTTAGTTTTGTTAGCA 57.873 29.630 0.00 0.00 31.19 3.49
461 481 9.608617 GAGATTGGTAAGTTTAGTTTTGTTAGC 57.391 33.333 0.00 0.00 0.00 3.09
462 482 9.807386 CGAGATTGGTAAGTTTAGTTTTGTTAG 57.193 33.333 0.00 0.00 0.00 2.34
463 483 9.328845 ACGAGATTGGTAAGTTTAGTTTTGTTA 57.671 29.630 0.00 0.00 0.00 2.41
464 484 8.126700 CACGAGATTGGTAAGTTTAGTTTTGTT 58.873 33.333 0.00 0.00 0.00 2.83
465 485 7.636326 CACGAGATTGGTAAGTTTAGTTTTGT 58.364 34.615 0.00 0.00 0.00 2.83
466 486 6.577427 GCACGAGATTGGTAAGTTTAGTTTTG 59.423 38.462 0.00 0.00 0.00 2.44
467 487 6.261381 TGCACGAGATTGGTAAGTTTAGTTTT 59.739 34.615 0.00 0.00 0.00 2.43
468 488 5.761234 TGCACGAGATTGGTAAGTTTAGTTT 59.239 36.000 0.00 0.00 0.00 2.66
469 489 5.178809 GTGCACGAGATTGGTAAGTTTAGTT 59.821 40.000 0.00 0.00 0.00 2.24
470 490 4.689345 GTGCACGAGATTGGTAAGTTTAGT 59.311 41.667 0.00 0.00 0.00 2.24
471 491 4.688879 TGTGCACGAGATTGGTAAGTTTAG 59.311 41.667 13.13 0.00 0.00 1.85
472 492 4.633175 TGTGCACGAGATTGGTAAGTTTA 58.367 39.130 13.13 0.00 0.00 2.01
473 493 3.472652 TGTGCACGAGATTGGTAAGTTT 58.527 40.909 13.13 0.00 0.00 2.66
474 494 3.120321 TGTGCACGAGATTGGTAAGTT 57.880 42.857 13.13 0.00 0.00 2.66
475 495 2.806244 GTTGTGCACGAGATTGGTAAGT 59.194 45.455 13.13 0.00 0.00 2.24
476 496 2.159627 GGTTGTGCACGAGATTGGTAAG 59.840 50.000 13.13 0.00 0.00 2.34
477 497 2.147958 GGTTGTGCACGAGATTGGTAA 58.852 47.619 13.13 0.00 0.00 2.85
478 498 1.609580 GGGTTGTGCACGAGATTGGTA 60.610 52.381 13.13 0.00 0.00 3.25
479 499 0.889186 GGGTTGTGCACGAGATTGGT 60.889 55.000 13.13 0.00 0.00 3.67
480 500 0.606401 AGGGTTGTGCACGAGATTGG 60.606 55.000 13.13 0.00 0.00 3.16
481 501 2.093306 TAGGGTTGTGCACGAGATTG 57.907 50.000 13.13 0.00 0.00 2.67
482 502 3.350219 AATAGGGTTGTGCACGAGATT 57.650 42.857 13.13 5.15 0.00 2.40
483 503 3.741388 GCTAATAGGGTTGTGCACGAGAT 60.741 47.826 13.13 1.63 0.00 2.75
484 504 2.418197 GCTAATAGGGTTGTGCACGAGA 60.418 50.000 13.13 0.00 0.00 4.04
485 505 1.933853 GCTAATAGGGTTGTGCACGAG 59.066 52.381 13.13 0.00 0.00 4.18
486 506 1.553248 AGCTAATAGGGTTGTGCACGA 59.447 47.619 13.13 7.71 0.00 4.35
487 507 2.024176 AGCTAATAGGGTTGTGCACG 57.976 50.000 13.13 0.00 0.00 5.34
488 508 3.764885 CAAGCTAATAGGGTTGTGCAC 57.235 47.619 10.75 10.75 39.12 4.57
493 513 8.316640 GATTGATAGACAAGCTAATAGGGTTG 57.683 38.462 5.11 5.11 46.26 3.77
513 533 8.023128 GAAGGATTTCAAAATCGTGAAGATTGA 58.977 33.333 10.46 0.00 44.43 2.57
514 534 7.007725 CGAAGGATTTCAAAATCGTGAAGATTG 59.992 37.037 10.46 0.00 44.43 2.67
515 535 7.023575 CGAAGGATTTCAAAATCGTGAAGATT 58.976 34.615 10.46 0.00 44.43 2.40
516 536 6.149474 ACGAAGGATTTCAAAATCGTGAAGAT 59.851 34.615 10.46 0.00 44.43 2.40
517 537 5.468746 ACGAAGGATTTCAAAATCGTGAAGA 59.531 36.000 10.46 0.00 44.43 2.87
518 538 5.689819 ACGAAGGATTTCAAAATCGTGAAG 58.310 37.500 10.46 8.11 44.43 3.02
519 539 5.682943 ACGAAGGATTTCAAAATCGTGAA 57.317 34.783 10.46 0.00 44.43 3.18
520 540 6.619874 GCTTACGAAGGATTTCAAAATCGTGA 60.620 38.462 10.46 0.19 44.43 4.35
521 541 5.508224 GCTTACGAAGGATTTCAAAATCGTG 59.492 40.000 10.46 3.70 44.43 4.35
522 542 5.411669 AGCTTACGAAGGATTTCAAAATCGT 59.588 36.000 8.87 7.03 44.43 3.73
523 543 5.869350 AGCTTACGAAGGATTTCAAAATCG 58.131 37.500 8.87 2.88 44.43 3.34
524 544 6.466097 CGAAGCTTACGAAGGATTTCAAAATC 59.534 38.462 0.00 6.88 43.12 2.17
525 545 6.148811 TCGAAGCTTACGAAGGATTTCAAAAT 59.851 34.615 15.48 0.00 36.84 1.82
526 546 5.467399 TCGAAGCTTACGAAGGATTTCAAAA 59.533 36.000 15.48 0.00 36.84 2.44
527 547 4.992319 TCGAAGCTTACGAAGGATTTCAAA 59.008 37.500 15.48 0.00 36.84 2.69
528 548 4.562082 TCGAAGCTTACGAAGGATTTCAA 58.438 39.130 15.48 0.00 36.84 2.69
529 549 4.182693 TCGAAGCTTACGAAGGATTTCA 57.817 40.909 15.48 0.00 36.84 2.69
537 557 3.322369 TGAGCATTTCGAAGCTTACGAA 58.678 40.909 21.67 21.67 45.65 3.85
538 558 2.923655 CTGAGCATTTCGAAGCTTACGA 59.076 45.455 12.58 14.32 42.04 3.43
539 559 2.029728 CCTGAGCATTTCGAAGCTTACG 59.970 50.000 12.58 5.42 42.04 3.18
540 560 2.352960 CCCTGAGCATTTCGAAGCTTAC 59.647 50.000 12.58 2.95 42.04 2.34
541 561 2.632377 CCCTGAGCATTTCGAAGCTTA 58.368 47.619 12.58 8.24 42.04 3.09
542 562 1.457346 CCCTGAGCATTTCGAAGCTT 58.543 50.000 12.58 0.00 42.04 3.74
543 563 1.028868 GCCCTGAGCATTTCGAAGCT 61.029 55.000 11.33 11.33 45.25 3.74
544 564 1.431036 GCCCTGAGCATTTCGAAGC 59.569 57.895 0.00 0.00 42.97 3.86
545 565 0.393537 AGGCCCTGAGCATTTCGAAG 60.394 55.000 0.00 0.00 46.50 3.79
546 566 0.392998 GAGGCCCTGAGCATTTCGAA 60.393 55.000 0.00 0.00 46.50 3.71
547 567 1.221840 GAGGCCCTGAGCATTTCGA 59.778 57.895 0.00 0.00 46.50 3.71
548 568 1.821332 GGAGGCCCTGAGCATTTCG 60.821 63.158 0.00 0.00 46.50 3.46
549 569 0.033699 AAGGAGGCCCTGAGCATTTC 60.034 55.000 0.00 0.00 43.48 2.17
550 570 0.411058 AAAGGAGGCCCTGAGCATTT 59.589 50.000 0.00 0.00 43.48 2.32
551 571 0.411058 AAAAGGAGGCCCTGAGCATT 59.589 50.000 0.00 0.00 43.48 3.56
552 572 0.411058 AAAAAGGAGGCCCTGAGCAT 59.589 50.000 0.00 0.00 43.48 3.79
553 573 0.251341 GAAAAAGGAGGCCCTGAGCA 60.251 55.000 0.00 0.00 43.48 4.26
554 574 0.251341 TGAAAAAGGAGGCCCTGAGC 60.251 55.000 0.00 0.00 43.48 4.26
555 575 1.352352 TCTGAAAAAGGAGGCCCTGAG 59.648 52.381 0.00 0.00 43.48 3.35
556 576 1.444933 TCTGAAAAAGGAGGCCCTGA 58.555 50.000 0.00 0.00 43.48 3.86
557 577 2.373224 GATCTGAAAAAGGAGGCCCTG 58.627 52.381 0.00 0.00 43.48 4.45
559 579 1.005924 TGGATCTGAAAAAGGAGGCCC 59.994 52.381 0.00 0.00 0.00 5.80
560 580 2.095461 GTGGATCTGAAAAAGGAGGCC 58.905 52.381 0.00 0.00 0.00 5.19
561 581 2.795329 TGTGGATCTGAAAAAGGAGGC 58.205 47.619 0.00 0.00 0.00 4.70
562 582 5.536161 TCTTTTGTGGATCTGAAAAAGGAGG 59.464 40.000 18.54 4.19 39.17 4.30
563 583 6.639632 TCTTTTGTGGATCTGAAAAAGGAG 57.360 37.500 18.54 4.28 39.17 3.69
564 584 6.833416 TCTTCTTTTGTGGATCTGAAAAAGGA 59.167 34.615 18.54 13.34 39.17 3.36
565 585 6.920210 GTCTTCTTTTGTGGATCTGAAAAAGG 59.080 38.462 18.54 9.89 39.17 3.11
566 586 6.920210 GGTCTTCTTTTGTGGATCTGAAAAAG 59.080 38.462 15.29 15.29 39.74 2.27
567 587 6.607198 AGGTCTTCTTTTGTGGATCTGAAAAA 59.393 34.615 0.00 0.00 0.00 1.94
568 588 6.039717 CAGGTCTTCTTTTGTGGATCTGAAAA 59.960 38.462 0.00 0.00 38.71 2.29
569 589 5.532406 CAGGTCTTCTTTTGTGGATCTGAAA 59.468 40.000 0.00 0.00 38.71 2.69
570 590 5.065914 CAGGTCTTCTTTTGTGGATCTGAA 58.934 41.667 0.00 0.00 38.71 3.02
571 591 4.103153 ACAGGTCTTCTTTTGTGGATCTGA 59.897 41.667 8.73 0.00 38.71 3.27
572 592 4.392940 ACAGGTCTTCTTTTGTGGATCTG 58.607 43.478 0.00 0.00 41.21 2.90
573 593 4.646572 GACAGGTCTTCTTTTGTGGATCT 58.353 43.478 0.00 0.00 0.00 2.75
574 594 3.433615 CGACAGGTCTTCTTTTGTGGATC 59.566 47.826 0.00 0.00 0.00 3.36
575 595 3.071023 TCGACAGGTCTTCTTTTGTGGAT 59.929 43.478 0.00 0.00 0.00 3.41
576 596 2.432874 TCGACAGGTCTTCTTTTGTGGA 59.567 45.455 0.00 0.00 0.00 4.02
577 597 2.802816 CTCGACAGGTCTTCTTTTGTGG 59.197 50.000 0.00 0.00 0.00 4.17
578 598 2.802816 CCTCGACAGGTCTTCTTTTGTG 59.197 50.000 0.00 0.00 34.60 3.33
579 599 2.224305 CCCTCGACAGGTCTTCTTTTGT 60.224 50.000 0.00 0.00 38.30 2.83
580 600 2.037251 TCCCTCGACAGGTCTTCTTTTG 59.963 50.000 0.00 0.00 38.30 2.44
581 601 2.326428 TCCCTCGACAGGTCTTCTTTT 58.674 47.619 0.00 0.00 38.30 2.27
582 602 2.011122 TCCCTCGACAGGTCTTCTTT 57.989 50.000 0.00 0.00 38.30 2.52
583 603 2.239681 ATCCCTCGACAGGTCTTCTT 57.760 50.000 0.00 0.00 38.30 2.52
584 604 2.104170 GAATCCCTCGACAGGTCTTCT 58.896 52.381 0.00 0.00 38.30 2.85
585 605 1.825474 TGAATCCCTCGACAGGTCTTC 59.175 52.381 0.00 3.35 38.30 2.87
586 606 1.938585 TGAATCCCTCGACAGGTCTT 58.061 50.000 0.00 0.00 38.30 3.01
587 607 2.166907 ATGAATCCCTCGACAGGTCT 57.833 50.000 0.00 0.00 38.30 3.85
588 608 2.939103 CAAATGAATCCCTCGACAGGTC 59.061 50.000 0.00 0.00 38.30 3.85
589 609 2.941415 GCAAATGAATCCCTCGACAGGT 60.941 50.000 0.00 0.00 38.30 4.00
590 610 1.672881 GCAAATGAATCCCTCGACAGG 59.327 52.381 0.00 0.00 39.98 4.00
591 611 2.636830 AGCAAATGAATCCCTCGACAG 58.363 47.619 0.00 0.00 0.00 3.51
592 612 2.749076 CAAGCAAATGAATCCCTCGACA 59.251 45.455 0.00 0.00 0.00 4.35
593 613 2.098117 CCAAGCAAATGAATCCCTCGAC 59.902 50.000 0.00 0.00 0.00 4.20
594 614 2.290896 ACCAAGCAAATGAATCCCTCGA 60.291 45.455 0.00 0.00 0.00 4.04
595 615 2.094675 ACCAAGCAAATGAATCCCTCG 58.905 47.619 0.00 0.00 0.00 4.63
596 616 4.273318 AGTACCAAGCAAATGAATCCCTC 58.727 43.478 0.00 0.00 0.00 4.30
597 617 4.322057 AGTACCAAGCAAATGAATCCCT 57.678 40.909 0.00 0.00 0.00 4.20
598 618 4.462483 TGAAGTACCAAGCAAATGAATCCC 59.538 41.667 0.00 0.00 0.00 3.85
599 619 5.643379 TGAAGTACCAAGCAAATGAATCC 57.357 39.130 0.00 0.00 0.00 3.01
600 620 7.945033 TTTTGAAGTACCAAGCAAATGAATC 57.055 32.000 0.00 0.00 31.20 2.52
601 621 8.907222 ATTTTTGAAGTACCAAGCAAATGAAT 57.093 26.923 0.00 0.00 31.20 2.57
602 622 9.823647 TTATTTTTGAAGTACCAAGCAAATGAA 57.176 25.926 0.00 0.00 31.20 2.57
603 623 9.995003 ATTATTTTTGAAGTACCAAGCAAATGA 57.005 25.926 0.00 0.00 31.20 2.57
645 665 8.922058 TTTTACGCCGGCATAAAAATAATAAA 57.078 26.923 31.68 12.02 29.52 1.40
647 667 8.569641 AGATTTTACGCCGGCATAAAAATAATA 58.430 29.630 35.44 18.46 34.76 0.98
648 668 7.430441 AGATTTTACGCCGGCATAAAAATAAT 58.570 30.769 35.44 23.33 34.76 1.28
651 671 5.257082 AGATTTTACGCCGGCATAAAAAT 57.743 34.783 35.44 31.92 34.76 1.82
653 673 4.260866 GCTAGATTTTACGCCGGCATAAAA 60.261 41.667 34.40 34.40 35.38 1.52
655 675 2.803956 GCTAGATTTTACGCCGGCATAA 59.196 45.455 28.98 20.62 0.00 1.90
657 677 1.226746 GCTAGATTTTACGCCGGCAT 58.773 50.000 28.98 15.72 0.00 4.40
658 678 0.812412 GGCTAGATTTTACGCCGGCA 60.812 55.000 28.98 6.55 32.22 5.69
660 680 2.223876 TGTAGGCTAGATTTTACGCCGG 60.224 50.000 0.00 0.00 46.85 6.13
661 681 3.088194 TGTAGGCTAGATTTTACGCCG 57.912 47.619 0.00 0.00 46.85 6.46
662 682 4.186159 TGTTGTAGGCTAGATTTTACGCC 58.814 43.478 0.00 0.00 42.79 5.68
663 683 5.350640 ACTTGTTGTAGGCTAGATTTTACGC 59.649 40.000 0.00 0.00 0.00 4.42
664 684 6.963049 ACTTGTTGTAGGCTAGATTTTACG 57.037 37.500 0.00 0.00 0.00 3.18
693 713 7.320324 CGTGTATGTTTGTATTGTGTTTCTCAC 59.680 37.037 0.00 0.00 46.31 3.51
701 724 4.777823 TGTGCGTGTATGTTTGTATTGTG 58.222 39.130 0.00 0.00 0.00 3.33
713 736 1.078709 GTGAGTGCATGTGCGTGTAT 58.921 50.000 0.00 0.00 45.83 2.29
732 767 1.154197 CATGTGCTCGCTCATATGGG 58.846 55.000 2.13 0.00 33.61 4.00
735 770 3.062763 GCTTACATGTGCTCGCTCATAT 58.937 45.455 9.11 0.00 0.00 1.78
744 779 4.022849 GGAAAAAGTGAGCTTACATGTGCT 60.023 41.667 9.11 9.75 42.82 4.40
745 780 4.229876 GGAAAAAGTGAGCTTACATGTGC 58.770 43.478 9.11 4.06 33.95 4.57
746 781 4.321230 GGGGAAAAAGTGAGCTTACATGTG 60.321 45.833 9.11 0.00 33.95 3.21
747 782 3.826729 GGGGAAAAAGTGAGCTTACATGT 59.173 43.478 11.65 2.69 33.95 3.21
755 790 1.821136 CCATGAGGGGAAAAAGTGAGC 59.179 52.381 0.00 0.00 0.00 4.26
768 803 0.251297 TGTGTTTCCAGCCCATGAGG 60.251 55.000 0.00 0.00 39.47 3.86
770 805 1.327303 GTTGTGTTTCCAGCCCATGA 58.673 50.000 0.00 0.00 0.00 3.07
772 807 1.039856 GTGTTGTGTTTCCAGCCCAT 58.960 50.000 0.00 0.00 0.00 4.00
773 808 0.323816 TGTGTTGTGTTTCCAGCCCA 60.324 50.000 0.00 0.00 0.00 5.36
775 810 1.470805 GGTTGTGTTGTGTTTCCAGCC 60.471 52.381 0.00 0.00 0.00 4.85
776 811 1.203523 TGGTTGTGTTGTGTTTCCAGC 59.796 47.619 0.00 0.00 0.00 4.85
777 812 3.490761 GGATGGTTGTGTTGTGTTTCCAG 60.491 47.826 0.00 0.00 0.00 3.86
778 813 2.428890 GGATGGTTGTGTTGTGTTTCCA 59.571 45.455 0.00 0.00 0.00 3.53
779 814 2.693074 AGGATGGTTGTGTTGTGTTTCC 59.307 45.455 0.00 0.00 0.00 3.13
780 815 3.130340 ACAGGATGGTTGTGTTGTGTTTC 59.870 43.478 0.00 0.00 43.62 2.78
782 817 2.733956 ACAGGATGGTTGTGTTGTGTT 58.266 42.857 0.00 0.00 43.62 3.32
783 818 2.435372 ACAGGATGGTTGTGTTGTGT 57.565 45.000 0.00 0.00 43.62 3.72
797 843 4.464951 ACGTGTGATTGGATAACTACAGGA 59.535 41.667 0.00 0.00 31.18 3.86
801 847 7.758528 AGAACTAACGTGTGATTGGATAACTAC 59.241 37.037 0.00 0.00 0.00 2.73
802 848 7.833786 AGAACTAACGTGTGATTGGATAACTA 58.166 34.615 0.00 0.00 0.00 2.24
803 849 6.698380 AGAACTAACGTGTGATTGGATAACT 58.302 36.000 0.00 0.00 0.00 2.24
804 850 6.963049 AGAACTAACGTGTGATTGGATAAC 57.037 37.500 0.00 0.00 0.00 1.89
805 851 7.972832 AAAGAACTAACGTGTGATTGGATAA 57.027 32.000 0.00 0.00 0.00 1.75
806 852 7.972832 AAAAGAACTAACGTGTGATTGGATA 57.027 32.000 0.00 0.00 0.00 2.59
892 985 3.766691 CCACCAGCAAGCATGGGC 61.767 66.667 12.79 0.00 42.48 5.36
994 1087 4.974721 GCGGGGCCCCATGGTATG 62.975 72.222 40.06 22.81 35.37 2.39
1219 1329 4.446413 GCGTCGATCGGGGTTGGT 62.446 66.667 16.41 0.00 40.26 3.67
1223 1333 4.816984 AGGAGCGTCGATCGGGGT 62.817 66.667 16.41 13.15 40.26 4.95
1256 1383 2.042831 GGCGCTCATGCAGAAACCT 61.043 57.895 7.64 0.00 39.64 3.50
1320 1448 3.279116 CACACACCCCACACGCAG 61.279 66.667 0.00 0.00 0.00 5.18
1321 1449 4.866224 CCACACACCCCACACGCA 62.866 66.667 0.00 0.00 0.00 5.24
1323 1451 4.947147 CCCCACACACCCCACACG 62.947 72.222 0.00 0.00 0.00 4.49
1326 1454 3.175710 AGTCCCCACACACCCCAC 61.176 66.667 0.00 0.00 0.00 4.61
1327 1455 3.174987 CAGTCCCCACACACCCCA 61.175 66.667 0.00 0.00 0.00 4.96
1328 1456 2.763645 AACAGTCCCCACACACCCC 61.764 63.158 0.00 0.00 0.00 4.95
1329 1457 1.528309 CAACAGTCCCCACACACCC 60.528 63.158 0.00 0.00 0.00 4.61
1330 1458 2.193536 GCAACAGTCCCCACACACC 61.194 63.158 0.00 0.00 0.00 4.16
1331 1459 2.193536 GGCAACAGTCCCCACACAC 61.194 63.158 0.00 0.00 0.00 3.82
1332 1460 2.194597 GGCAACAGTCCCCACACA 59.805 61.111 0.00 0.00 0.00 3.72
1333 1461 2.951475 TTCGGCAACAGTCCCCACAC 62.951 60.000 0.00 0.00 0.00 3.82
1334 1462 2.063015 ATTCGGCAACAGTCCCCACA 62.063 55.000 0.00 0.00 0.00 4.17
1335 1463 0.893727 AATTCGGCAACAGTCCCCAC 60.894 55.000 0.00 0.00 0.00 4.61
1336 1464 0.893270 CAATTCGGCAACAGTCCCCA 60.893 55.000 0.00 0.00 0.00 4.96
1337 1465 1.595093 CCAATTCGGCAACAGTCCCC 61.595 60.000 0.00 0.00 0.00 4.81
1338 1466 1.595093 CCCAATTCGGCAACAGTCCC 61.595 60.000 0.00 0.00 0.00 4.46
1346 1474 1.076118 ATGCATCCCCAATTCGGCA 60.076 52.632 0.00 0.00 35.54 5.69
1366 1494 6.266786 TCATCCAATGCATGAATCTAGCAAAT 59.733 34.615 0.00 0.00 42.15 2.32
1435 1563 2.507484 TCTCACAACAGGCCTCAATTG 58.493 47.619 0.00 10.97 0.00 2.32
1470 1598 3.364366 GCGTCAGAAATCAGAACCAGTTG 60.364 47.826 0.00 0.00 0.00 3.16
1548 1676 1.079127 CAACCCTAGGACCACGCAG 60.079 63.158 11.48 0.00 0.00 5.18
1616 1744 2.024369 AGGTTCAACAAGTTGTTCCCCT 60.024 45.455 18.34 18.29 38.77 4.79
1626 1754 9.014297 AGATAAAAATACTGGAGGTTCAACAAG 57.986 33.333 0.00 0.00 0.00 3.16
1765 1894 5.107104 CGAAACAGAGTGCACTTGCTAATAA 60.107 40.000 22.65 0.00 42.66 1.40
1801 1930 4.442733 GCACTATGATTCTGCTAAGACGTC 59.557 45.833 7.70 7.70 29.98 4.34
1834 1963 2.491693 AGCAACAACCAATTATCCACCG 59.508 45.455 0.00 0.00 0.00 4.94
1857 1989 0.038021 TGCCTATGCTTTGCCTGTCA 59.962 50.000 0.00 0.00 38.71 3.58
1959 2091 6.182627 TGCCAGTGATTTCTTAGTGAATCAT 58.817 36.000 13.46 4.78 34.24 2.45
1960 2092 5.559770 TGCCAGTGATTTCTTAGTGAATCA 58.440 37.500 8.74 8.74 34.24 2.57
1961 2093 6.500684 TTGCCAGTGATTTCTTAGTGAATC 57.499 37.500 0.00 4.88 34.24 2.52
1962 2094 7.472334 AATTGCCAGTGATTTCTTAGTGAAT 57.528 32.000 0.00 0.00 34.24 2.57
2077 2211 6.718522 TTCAATATGGACTACATACGGACA 57.281 37.500 0.00 0.00 44.41 4.02
2113 2247 5.345702 TCACCTCAGTTTCGAATTATACGG 58.654 41.667 0.00 0.00 0.00 4.02
2412 2547 4.080751 TGGGGGCTATAGTACAGTTTGTTC 60.081 45.833 0.84 0.00 0.00 3.18
2425 2560 3.202595 ACGGTTAACATTTGGGGGCTATA 59.797 43.478 8.10 0.00 0.00 1.31
2433 2568 6.587990 TGCATTTCATTACGGTTAACATTTGG 59.412 34.615 8.10 0.00 0.00 3.28
2458 2593 4.595762 ATTGAAATGCTTGCTTGTCACT 57.404 36.364 1.51 0.00 0.00 3.41
2460 2595 3.495377 GCAATTGAAATGCTTGCTTGTCA 59.505 39.130 10.34 0.00 41.52 3.58
2467 2602 5.856126 ATTGACTGCAATTGAAATGCTTG 57.144 34.783 10.34 2.51 41.87 4.01
2508 2644 5.659463 AGCACACACTGAAATGCTTTTTAA 58.341 33.333 0.00 0.00 46.06 1.52
2509 2646 5.261209 AGCACACACTGAAATGCTTTTTA 57.739 34.783 0.00 0.00 46.06 1.52
2529 2666 4.576053 TGTGATTTGTACCATATGCAGAGC 59.424 41.667 0.00 0.00 0.00 4.09
2601 2738 7.443575 ACTTATCACAGATAGAATGCAATCCAC 59.556 37.037 0.00 0.00 0.00 4.02
2645 2782 2.632996 AGAAGGTACTGTGCTACTGCAA 59.367 45.455 0.00 0.00 46.57 4.08
2879 3017 7.739498 TTACTAAGTGGAAAAAGGTAAGCAG 57.261 36.000 0.00 0.00 0.00 4.24
2892 3030 5.483685 AGCACAAGTGATTACTAAGTGGA 57.516 39.130 18.55 0.00 40.54 4.02
2941 6026 9.338622 GGCAGTTTCTATATTTTGTAGTACCAT 57.661 33.333 0.00 0.00 0.00 3.55
2965 6052 2.192187 GCTCCCAGCATTAGCAGGC 61.192 63.158 0.00 0.00 45.38 4.85
3120 9881 0.657368 GTTGTTCAAAGCGCCTCGTG 60.657 55.000 2.29 0.00 0.00 4.35
3122 9883 1.136336 GTAGTTGTTCAAAGCGCCTCG 60.136 52.381 2.29 0.00 0.00 4.63
3223 9984 2.492773 GCCCATTTCTGCCATCCGG 61.493 63.158 0.00 0.00 0.00 5.14
3283 10044 0.623723 GGGATGGCCTTCCTTGTGTA 59.376 55.000 30.91 0.00 35.97 2.90
3298 10059 0.846870 GCCTAGGGCCAATAGGGGAT 60.847 60.000 26.49 0.00 44.06 3.85
3421 11291 4.697756 CCGCCGACAAGGAAGCCA 62.698 66.667 0.00 0.00 45.00 4.75
3595 12434 3.445096 CCTCCGAGCCAATTTCAAATCTT 59.555 43.478 0.00 0.00 0.00 2.40
3730 12569 2.200170 GACGGGCTGCATTGTTGTCC 62.200 60.000 0.50 0.00 0.00 4.02
3808 12647 3.017581 ATGACAGGCCCAGGGTCC 61.018 66.667 6.42 8.79 0.00 4.46
3837 12676 3.839432 GGCTCCCTCCTTCGTCGG 61.839 72.222 0.00 0.00 0.00 4.79
3890 12729 0.178926 TGGTAAGAACTGGGACCGGA 60.179 55.000 9.46 0.00 34.49 5.14
3964 12803 3.491792 GCCACTCAGAGTAGGTTATCTGC 60.492 52.174 1.67 0.00 42.20 4.26
4092 12976 3.986572 CACTCTGCTCAGTAGACAGTTTG 59.013 47.826 0.00 0.00 32.22 2.93
4095 13008 3.147553 TCACTCTGCTCAGTAGACAGT 57.852 47.619 0.00 0.00 32.22 3.55
4122 13039 8.644318 AGTTTACTTTACTGCAGAATATACGG 57.356 34.615 23.35 4.43 0.00 4.02
4187 13260 6.946340 ACAGATCCTTATGTGTGACAATACA 58.054 36.000 0.00 0.00 38.14 2.29
4196 13269 6.365970 AACTCTTCACAGATCCTTATGTGT 57.634 37.500 11.34 0.00 45.57 3.72
4197 13270 6.875726 TCAAACTCTTCACAGATCCTTATGTG 59.124 38.462 6.50 6.50 46.52 3.21
4198 13271 7.009179 TCAAACTCTTCACAGATCCTTATGT 57.991 36.000 0.00 0.00 0.00 2.29
4199 13272 7.042858 CGATCAAACTCTTCACAGATCCTTATG 60.043 40.741 0.00 0.00 30.75 1.90
4202 13275 5.174395 CGATCAAACTCTTCACAGATCCTT 58.826 41.667 0.00 0.00 30.75 3.36
4226 13302 0.042448 GACAACGCAGGAAACACGAC 60.042 55.000 0.00 0.00 36.22 4.34
4227 13303 1.484227 CGACAACGCAGGAAACACGA 61.484 55.000 0.00 0.00 36.22 4.35
4228 13304 1.083657 CGACAACGCAGGAAACACG 60.084 57.895 0.00 0.00 38.05 4.49
4270 13357 0.106335 CATCTCCATGCCTCGCTCTT 59.894 55.000 0.00 0.00 0.00 2.85
4271 13358 1.747145 CATCTCCATGCCTCGCTCT 59.253 57.895 0.00 0.00 0.00 4.09
4272 13359 4.357699 CATCTCCATGCCTCGCTC 57.642 61.111 0.00 0.00 0.00 5.03
4307 13394 8.033038 CCTGACTAAACAAAGTATGCTACAGTA 58.967 37.037 0.00 0.00 0.00 2.74
4311 13398 5.064834 GGCCTGACTAAACAAAGTATGCTAC 59.935 44.000 0.00 0.00 0.00 3.58
4312 13399 5.183228 GGCCTGACTAAACAAAGTATGCTA 58.817 41.667 0.00 0.00 0.00 3.49
4313 13400 4.010349 GGCCTGACTAAACAAAGTATGCT 58.990 43.478 0.00 0.00 0.00 3.79
4314 13401 3.181510 CGGCCTGACTAAACAAAGTATGC 60.182 47.826 0.00 0.00 0.00 3.14
4315 13402 3.181510 GCGGCCTGACTAAACAAAGTATG 60.182 47.826 0.00 0.00 0.00 2.39
4316 13403 3.007635 GCGGCCTGACTAAACAAAGTAT 58.992 45.455 0.00 0.00 0.00 2.12
4317 13404 2.419667 GCGGCCTGACTAAACAAAGTA 58.580 47.619 0.00 0.00 0.00 2.24
4318 13405 1.235724 GCGGCCTGACTAAACAAAGT 58.764 50.000 0.00 0.00 0.00 2.66
4319 13406 0.521735 GGCGGCCTGACTAAACAAAG 59.478 55.000 12.87 0.00 0.00 2.77
4320 13407 0.891904 GGGCGGCCTGACTAAACAAA 60.892 55.000 22.87 0.00 0.00 2.83
4362 13449 5.506686 TCGACATGTGTTTGGAATTTTGA 57.493 34.783 1.15 0.00 0.00 2.69
4404 13501 4.404654 GACGGCTTTTGGGCAGCG 62.405 66.667 0.00 0.00 38.24 5.18
4406 13503 4.404654 GCGACGGCTTTTGGGCAG 62.405 66.667 0.00 0.00 40.90 4.85
4465 13575 1.199615 GGGGGAGGAAGAAGAGACTG 58.800 60.000 0.00 0.00 0.00 3.51
4529 13640 4.487412 GCAAGCCATGACTGCCGC 62.487 66.667 0.00 0.00 0.00 6.53
4774 13885 2.240667 AGGGGGTCAGAAATCACAGATG 59.759 50.000 0.00 0.00 0.00 2.90
4900 14028 5.461078 TGCTTACTCTACAACACGAAGAAAC 59.539 40.000 0.00 0.00 0.00 2.78
4958 14088 7.901029 TGTTCTCAGAGTGAAATACTGAATCT 58.099 34.615 0.00 0.00 40.53 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.