Multiple sequence alignment - TraesCS3A01G330200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G330200 chr3A 100.000 6812 0 0 1 6812 574985003 574991814 0.000000e+00 12580.0
1 TraesCS3A01G330200 chr3A 87.527 457 45 6 6357 6812 740877746 740877301 1.010000e-142 518.0
2 TraesCS3A01G330200 chr3D 95.947 4342 122 22 612 4928 436648332 436652644 0.000000e+00 6994.0
3 TraesCS3A01G330200 chr3D 93.827 1458 71 12 4926 6367 436652679 436654133 0.000000e+00 2176.0
4 TraesCS3A01G330200 chr3D 87.033 455 49 8 6362 6812 23169289 23168841 7.880000e-139 505.0
5 TraesCS3A01G330200 chr3D 94.323 229 12 1 1 229 165453154 165453381 3.910000e-92 350.0
6 TraesCS3A01G330200 chr3B 96.285 3688 99 16 1265 4928 572250084 572253757 0.000000e+00 6017.0
7 TraesCS3A01G330200 chr3B 94.415 1307 58 7 4926 6231 572253792 572255084 0.000000e+00 1995.0
8 TraesCS3A01G330200 chr3B 89.684 601 37 9 677 1264 572249190 572249778 0.000000e+00 743.0
9 TraesCS3A01G330200 chr3B 91.837 49 3 1 6320 6367 572255330 572255378 4.410000e-07 67.6
10 TraesCS3A01G330200 chr2B 87.692 455 43 7 6364 6812 776999653 777000100 1.010000e-142 518.0
11 TraesCS3A01G330200 chr5D 86.889 450 46 8 6364 6807 39813693 39814135 6.140000e-135 492.0
12 TraesCS3A01G330200 chr5D 85.938 448 50 9 6364 6807 208513863 208514301 3.720000e-127 466.0
13 TraesCS3A01G330200 chr7B 85.777 457 52 8 6362 6811 67903499 67903049 8.000000e-129 472.0
14 TraesCS3A01G330200 chr7B 86.545 275 31 6 233 504 10638859 10639130 1.440000e-76 298.0
15 TraesCS3A01G330200 chr7B 87.500 72 7 2 505 575 10639114 10639184 1.570000e-11 82.4
16 TraesCS3A01G330200 chr2A 86.161 448 46 9 6366 6807 133463848 133463411 2.880000e-128 470.0
17 TraesCS3A01G330200 chr2D 85.586 444 49 10 6375 6812 340282086 340281652 1.040000e-122 451.0
18 TraesCS3A01G330200 chr5A 84.835 455 56 8 6364 6811 646559584 646559136 4.850000e-121 446.0
19 TraesCS3A01G330200 chr5B 90.087 343 31 3 235 575 691176806 691176465 6.270000e-120 442.0
20 TraesCS3A01G330200 chr5B 94.760 229 12 0 1 229 691177073 691176845 2.340000e-94 357.0
21 TraesCS3A01G330200 chr6A 78.998 619 79 22 1 576 36490033 36489423 6.450000e-100 375.0
22 TraesCS3A01G330200 chr6A 85.185 108 11 2 78 185 11867862 11867964 9.340000e-19 106.0
23 TraesCS3A01G330200 chr6B 84.646 254 34 5 234 483 444918423 444918171 1.470000e-61 248.0
24 TraesCS3A01G330200 chr1B 86.413 184 24 1 1 184 3922298 3922480 4.170000e-47 200.0
25 TraesCS3A01G330200 chr1B 86.667 75 9 1 50 124 49561939 49562012 1.570000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G330200 chr3A 574985003 574991814 6811 False 12580.00 12580 100.00000 1 6812 1 chr3A.!!$F1 6811
1 TraesCS3A01G330200 chr3D 436648332 436654133 5801 False 4585.00 6994 94.88700 612 6367 2 chr3D.!!$F2 5755
2 TraesCS3A01G330200 chr3B 572249190 572255378 6188 False 2205.65 6017 93.05525 677 6367 4 chr3B.!!$F1 5690
3 TraesCS3A01G330200 chr5B 691176465 691177073 608 True 399.50 442 92.42350 1 575 2 chr5B.!!$R1 574
4 TraesCS3A01G330200 chr6A 36489423 36490033 610 True 375.00 375 78.99800 1 576 1 chr6A.!!$R1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 799 0.105246 TTTTGCCCCTGTGGAATGGT 60.105 50.000 0.00 0.0 35.39 3.55 F
1053 1111 0.027848 GTCTCTACGAGTACGGCTGC 59.972 60.000 0.00 0.0 44.46 5.25 F
2913 3294 0.890542 TGTCTCGCAAAGCTGGCATT 60.891 50.000 10.80 0.0 0.00 3.56 F
2925 3306 1.532437 GCTGGCATTTGCTTTTTGTCC 59.468 47.619 2.12 0.0 41.70 4.02 F
3791 4175 1.087202 TGCTAACCGCTTATGTGCCG 61.087 55.000 0.00 0.0 40.11 5.69 F
4411 4805 1.949525 GCGCCATATCTCCATTGTTGT 59.050 47.619 0.00 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2543 2924 1.541588 GGCTGTGAAAGACAATCCCAC 59.458 52.381 0.00 0.0 32.80 4.61 R
2978 3359 2.295349 CTCCTGCTCAAAACAGTGCAAT 59.705 45.455 0.00 0.0 37.53 3.56 R
3791 4175 2.691409 TGAGACCATCACCGGAATTC 57.309 50.000 9.46 0.0 31.12 2.17 R
4015 4399 2.971660 TCCAGAACAAACGTGACAGA 57.028 45.000 0.00 0.0 0.00 3.41 R
5170 5602 0.179037 CCAGCCGTCACATCCATGAT 60.179 55.000 0.00 0.0 0.00 2.45 R
6371 6968 0.035739 GTTTAGGTCGGCCAGTTGGA 59.964 55.000 9.71 0.0 37.39 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 4.137872 GCCCATCGTCGACCCGAA 62.138 66.667 10.58 0.00 40.73 4.30
80 81 4.487412 ATCGTCGACCCGAACCGC 62.487 66.667 10.58 0.00 40.73 5.68
152 153 2.283529 ACCGTTCCCTGCATCGAGT 61.284 57.895 0.00 0.00 0.00 4.18
229 230 0.598065 GCCGAAGCACAATCTTTGGT 59.402 50.000 10.50 0.00 45.41 3.67
233 234 2.293122 CGAAGCACAATCTTTGGTTGGA 59.707 45.455 0.00 0.00 34.87 3.53
279 323 1.227205 CGGAGATGGAGCAGTCTGC 60.227 63.158 17.48 17.48 45.46 4.26
290 337 1.737735 CAGTCTGCGCGGACATCAA 60.738 57.895 41.79 10.63 38.57 2.57
335 383 2.434336 CGTGATTGGAGGAGGGATTACA 59.566 50.000 0.00 0.00 0.00 2.41
340 388 1.140852 TGGAGGAGGGATTACAATGCG 59.859 52.381 0.00 0.00 0.00 4.73
341 389 1.543429 GGAGGAGGGATTACAATGCGG 60.543 57.143 0.00 0.00 0.00 5.69
362 411 1.004440 GCGTGATCATAGGGAGGCC 60.004 63.158 0.00 0.00 0.00 5.19
383 432 1.202498 GGACCGGTAATTCGAGGGAAG 60.202 57.143 7.34 0.00 35.19 3.46
388 437 2.679930 CGGTAATTCGAGGGAAGGCTTT 60.680 50.000 0.00 0.00 35.19 3.51
403 452 2.582636 AGGCTTTTGGATGGTGGAGTAT 59.417 45.455 0.00 0.00 0.00 2.12
424 473 2.487762 TGGTCAGTCATCGAAAATTGCC 59.512 45.455 0.00 0.00 0.00 4.52
434 483 2.034053 TCGAAAATTGCCAAGTCCACAC 59.966 45.455 0.00 0.00 0.00 3.82
435 484 2.223688 CGAAAATTGCCAAGTCCACACA 60.224 45.455 0.00 0.00 0.00 3.72
438 487 3.389925 AATTGCCAAGTCCACACAATG 57.610 42.857 0.00 0.00 31.64 2.82
439 488 2.064434 TTGCCAAGTCCACACAATGA 57.936 45.000 0.00 0.00 0.00 2.57
451 500 6.989169 AGTCCACACAATGAAGCTATTAGATC 59.011 38.462 0.00 0.00 0.00 2.75
453 502 6.988580 TCCACACAATGAAGCTATTAGATCAG 59.011 38.462 0.00 0.00 0.00 2.90
460 509 7.752518 ATGAAGCTATTAGATCAGGGATGAT 57.247 36.000 0.00 0.00 0.00 2.45
461 510 7.565190 TGAAGCTATTAGATCAGGGATGATT 57.435 36.000 0.00 0.00 0.00 2.57
492 541 5.657474 TGAGATTTGTGGGTCTAATCGTAC 58.343 41.667 0.00 0.00 41.00 3.67
517 566 2.452295 TTATGGTTCGTGCGGTGTTA 57.548 45.000 0.00 0.00 0.00 2.41
532 581 3.626930 GGTGTTATGGGGCTAATTGTGA 58.373 45.455 0.00 0.00 0.00 3.58
536 585 4.475381 TGTTATGGGGCTAATTGTGAGGTA 59.525 41.667 0.00 0.00 0.00 3.08
539 588 2.849943 TGGGGCTAATTGTGAGGTACAT 59.150 45.455 0.00 0.00 39.48 2.29
542 591 4.130118 GGGCTAATTGTGAGGTACATCTG 58.870 47.826 9.22 0.00 39.48 2.90
548 597 7.334421 GCTAATTGTGAGGTACATCTGAGAAAA 59.666 37.037 9.22 0.00 39.48 2.29
563 612 9.472361 CATCTGAGAAAATTCTTGTTTGATTGT 57.528 29.630 0.00 0.00 37.73 2.71
697 746 4.987912 ACTAAACCAAACATGCCAAATTCG 59.012 37.500 0.00 0.00 0.00 3.34
712 762 5.676331 GCCAAATTCGTATTCTTCTTGGTCC 60.676 44.000 4.88 0.00 0.00 4.46
742 792 4.648762 TCATATTACCATTTTGCCCCTGTG 59.351 41.667 0.00 0.00 0.00 3.66
749 799 0.105246 TTTTGCCCCTGTGGAATGGT 60.105 50.000 0.00 0.00 35.39 3.55
775 825 2.322081 AACCCGTCATTTGCGACCG 61.322 57.895 0.00 0.00 31.91 4.79
776 826 4.160635 CCCGTCATTTGCGACCGC 62.161 66.667 7.53 7.53 42.35 5.68
777 827 4.160635 CCGTCATTTGCGACCGCC 62.161 66.667 12.08 0.00 41.09 6.13
778 828 4.499023 CGTCATTTGCGACCGCCG 62.499 66.667 12.08 3.20 41.09 6.46
779 829 3.115892 GTCATTTGCGACCGCCGA 61.116 61.111 12.08 0.69 41.76 5.54
780 830 2.357638 TCATTTGCGACCGCCGAA 60.358 55.556 12.08 7.28 41.76 4.30
781 831 2.098298 CATTTGCGACCGCCGAAG 59.902 61.111 12.08 0.00 41.76 3.79
843 893 0.534203 GTCGTGAACAGCAGGGGAAA 60.534 55.000 0.00 0.00 33.31 3.13
944 1002 7.775053 TCTTGATTGCATAAACCCTAGTTTT 57.225 32.000 0.00 0.00 43.82 2.43
951 1009 5.242838 TGCATAAACCCTAGTTTTGAAGTGG 59.757 40.000 0.00 0.00 43.82 4.00
958 1016 2.082140 AGTTTTGAAGTGGGGGTTCC 57.918 50.000 0.00 0.00 0.00 3.62
1053 1111 0.027848 GTCTCTACGAGTACGGCTGC 59.972 60.000 0.00 0.00 44.46 5.25
1133 1192 1.028868 AGGGCAGCAGCTTTCGATTC 61.029 55.000 0.00 0.00 41.70 2.52
1159 1219 3.011369 GGGATAAAAGAAGGGGTGGAGTT 59.989 47.826 0.00 0.00 0.00 3.01
1163 1223 1.363246 AAGAAGGGGTGGAGTTCTCC 58.637 55.000 11.53 11.53 30.07 3.71
1175 1235 2.502130 GGAGTTCTCCCCACTAAGGAAG 59.498 54.545 7.57 0.00 41.22 3.46
1198 1262 7.527084 AGTGTAGATCGAAAGCAAGTTTATC 57.473 36.000 0.00 0.00 0.00 1.75
1209 1273 2.654863 CAAGTTTATCGGGGGCTCAAT 58.345 47.619 0.00 0.00 0.00 2.57
1216 1280 1.606313 CGGGGGCTCAATGGTGTTT 60.606 57.895 0.00 0.00 0.00 2.83
1217 1281 1.595093 CGGGGGCTCAATGGTGTTTC 61.595 60.000 0.00 0.00 0.00 2.78
1251 1315 3.364441 GCTTGCCGTCATGGTGCA 61.364 61.111 0.00 0.00 41.21 4.57
1348 1721 4.495422 CGAAGACATTGTTAGCCAGTAGT 58.505 43.478 0.00 0.00 0.00 2.73
1383 1756 9.859427 TTATTTAATTTTCTGTGCATTGAGGAG 57.141 29.630 0.00 0.00 0.00 3.69
1411 1784 5.212589 CATGGTCATCGTGCATATATGTG 57.787 43.478 14.14 4.49 0.00 3.21
1412 1785 3.663025 TGGTCATCGTGCATATATGTGG 58.337 45.455 14.14 4.38 0.00 4.17
1413 1786 3.323403 TGGTCATCGTGCATATATGTGGA 59.677 43.478 14.14 9.21 0.00 4.02
1415 1788 4.568359 GGTCATCGTGCATATATGTGGATC 59.432 45.833 14.14 0.00 0.00 3.36
1416 1789 5.414360 GTCATCGTGCATATATGTGGATCT 58.586 41.667 14.14 0.00 0.00 2.75
1417 1790 6.405842 GGTCATCGTGCATATATGTGGATCTA 60.406 42.308 14.14 3.52 0.00 1.98
1438 1811 9.862371 GATCTAAATGTCTCAAGAGTCACTTAA 57.138 33.333 0.00 0.00 37.03 1.85
1455 1828 7.661437 AGTCACTTAAGATGTTTCTGCAATACA 59.339 33.333 10.09 0.00 30.72 2.29
1530 1903 9.462174 CAAATTACAGTTGCAGAAAATTAGTGA 57.538 29.630 0.00 0.00 0.00 3.41
1589 1962 3.784701 ACCTATTCACGTAGAGCTGTG 57.215 47.619 0.00 0.00 37.44 3.66
1675 2048 2.353011 CCCATTGTGCTGACATTTGTCC 60.353 50.000 8.16 0.00 44.15 4.02
1828 2201 5.200483 TCAAGGAACTCACAAGGTTCAAAT 58.800 37.500 8.49 0.00 43.20 2.32
1859 2232 4.478686 AGCCTCCCCTTATTGTATGTTTCT 59.521 41.667 0.00 0.00 0.00 2.52
2004 2377 5.483685 TTGGTATGACTTACTTGCAGACT 57.516 39.130 0.00 0.00 0.00 3.24
2543 2924 2.758736 ACTGCTCTCTTGGCTAACTG 57.241 50.000 0.00 0.00 0.00 3.16
2913 3294 0.890542 TGTCTCGCAAAGCTGGCATT 60.891 50.000 10.80 0.00 0.00 3.56
2925 3306 1.532437 GCTGGCATTTGCTTTTTGTCC 59.468 47.619 2.12 0.00 41.70 4.02
2926 3307 2.807837 GCTGGCATTTGCTTTTTGTCCT 60.808 45.455 2.12 0.00 41.70 3.85
2974 3355 8.869897 TCATTCACTCGAATAGTTTATCAACAC 58.130 33.333 0.00 0.00 39.96 3.32
2978 3359 9.863845 TCACTCGAATAGTTTATCAACACATAA 57.136 29.630 0.00 0.00 35.76 1.90
3255 3636 8.930846 AGGAATACTGAATGGAATTGGAATAG 57.069 34.615 0.00 0.00 36.07 1.73
3276 3657 3.627123 AGAAAAACAAAGTGCCCAAATGC 59.373 39.130 0.00 0.00 0.00 3.56
3383 3766 9.503399 AGATTACGTGAAACTTAGAAAGGAAAT 57.497 29.630 0.00 0.00 31.75 2.17
3386 3769 6.956047 ACGTGAAACTTAGAAAGGAAATGAC 58.044 36.000 0.00 0.00 31.75 3.06
3389 3772 7.042051 CGTGAAACTTAGAAAGGAAATGACTGA 60.042 37.037 0.00 0.00 31.75 3.41
3493 3877 3.250762 TCATTGTGCTGTGCTTTCTGTAC 59.749 43.478 0.00 0.00 0.00 2.90
3532 3916 8.524487 GTTAGACAAGGAGATCCATTATATCGT 58.476 37.037 0.92 0.00 38.89 3.73
3596 3980 8.665685 CATAAGGACACATTAACAAGTTAGGAC 58.334 37.037 0.00 0.00 0.00 3.85
3635 4019 3.441572 CAGTAACTTTGCTTAGCATGCCT 59.558 43.478 15.66 4.37 38.76 4.75
3646 4030 2.469274 AGCATGCCTCTCATATTCCG 57.531 50.000 15.66 0.00 33.19 4.30
3651 4035 3.850122 TGCCTCTCATATTCCGTATCG 57.150 47.619 0.00 0.00 0.00 2.92
3791 4175 1.087202 TGCTAACCGCTTATGTGCCG 61.087 55.000 0.00 0.00 40.11 5.69
4015 4399 9.309224 AGTTTTCTTATGCCTTTATACCTTTGT 57.691 29.630 0.00 0.00 0.00 2.83
4027 4411 6.533819 TTATACCTTTGTCTGTCACGTTTG 57.466 37.500 0.00 0.00 0.00 2.93
4064 4449 4.141274 TGAAGTTCTGACTTTCCCCATTGA 60.141 41.667 4.17 0.00 45.88 2.57
4411 4805 1.949525 GCGCCATATCTCCATTGTTGT 59.050 47.619 0.00 0.00 0.00 3.32
4424 4818 8.634335 TCTCCATTGTTGTCTATTTTCATTCA 57.366 30.769 0.00 0.00 0.00 2.57
4561 4955 2.203126 GATGCGGCCCTCCTTCAG 60.203 66.667 0.00 0.00 0.00 3.02
4577 4971 7.611855 CCCTCCTTCAGTTTATCATGTTTAACT 59.388 37.037 2.99 2.99 0.00 2.24
4587 4981 9.537848 GTTTATCATGTTTAACTAAACCTGACG 57.462 33.333 17.23 0.00 46.13 4.35
4728 5122 6.682423 TTGTATCACCTACATGCTTGAATG 57.318 37.500 6.60 0.00 40.02 2.67
4903 5297 3.389983 TCAGGTGTTAAGTTAGCCACACT 59.610 43.478 13.42 7.58 39.63 3.55
4920 5314 5.872617 GCCACACTAACATACAAGTACATCA 59.127 40.000 0.00 0.00 0.00 3.07
4942 5373 6.338146 TCAATGTGTAAGCACTCAGTATACC 58.662 40.000 0.00 0.00 45.44 2.73
5022 5454 8.954950 TGTGTTTGTTATTTCATTGTCCAAAT 57.045 26.923 0.00 0.00 0.00 2.32
5170 5602 3.821600 GTCAGTCTGTCACCTTGTCTAGA 59.178 47.826 0.00 0.00 0.00 2.43
5229 5661 5.595885 ACTGATATCATTTCCACTCTGACG 58.404 41.667 5.72 0.00 0.00 4.35
5233 5665 2.248248 TCATTTCCACTCTGACGTCCT 58.752 47.619 14.12 0.00 0.00 3.85
5447 5879 5.335819 GCCGGAAGACTAATAGAGGTATGAC 60.336 48.000 5.05 0.00 0.00 3.06
5477 5911 1.522569 GAGCCTGACCTTACCGCAT 59.477 57.895 0.00 0.00 0.00 4.73
5663 6099 7.088589 AGTATGCTCATGGTTTTAACATGTC 57.911 36.000 0.00 0.25 44.57 3.06
5665 6101 3.818210 TGCTCATGGTTTTAACATGTCGT 59.182 39.130 0.00 0.00 44.57 4.34
5684 6120 1.197721 GTCTTTGTCTGTTGGCGGATG 59.802 52.381 0.00 0.00 31.86 3.51
5745 6181 0.039437 TCGCAGAAAGAGTCCACGAC 60.039 55.000 0.00 0.00 31.23 4.34
5836 6272 2.930562 GCTGATCCCCGGCCCTAT 60.931 66.667 0.00 0.00 41.33 2.57
5837 6273 3.072476 CTGATCCCCGGCCCTATG 58.928 66.667 0.00 0.00 0.00 2.23
5838 6274 1.843376 CTGATCCCCGGCCCTATGT 60.843 63.158 0.00 0.00 0.00 2.29
5870 6306 1.208293 CTAACTTCTGGGGCTGGTCTC 59.792 57.143 0.00 0.00 0.00 3.36
5872 6308 3.003173 TTCTGGGGCTGGTCTCCG 61.003 66.667 0.00 0.00 0.00 4.63
5973 6409 2.427095 GTCATTGTACCAAATCCAGGGC 59.573 50.000 0.00 0.00 0.00 5.19
5986 6422 0.464036 CCAGGGCTGTAGCGTTATGA 59.536 55.000 0.00 0.00 43.26 2.15
6046 6482 2.821546 TGTGTTCTGACTGACCTTTCG 58.178 47.619 0.00 0.00 0.00 3.46
6070 6506 5.998363 GGACTTAACATGAAACTGTTCCTCT 59.002 40.000 0.00 0.00 39.88 3.69
6072 6508 5.765182 ACTTAACATGAAACTGTTCCTCTGG 59.235 40.000 0.00 0.00 39.88 3.86
6157 6593 6.362248 TGTAGAGTATAGACTACATGGTGCA 58.638 40.000 12.22 0.00 42.27 4.57
6235 6675 8.594881 AAATCTACGGTATGAGCTAATTTGAG 57.405 34.615 0.00 0.00 0.00 3.02
6241 6681 6.038603 ACGGTATGAGCTAATTTGAGTACGTA 59.961 38.462 0.00 0.00 0.00 3.57
6267 6707 4.273969 GTGGTGTTGAAGGATCGTAAACAA 59.726 41.667 14.60 7.83 32.92 2.83
6369 6966 9.474313 ACCTGGATAAAAATACAATAAGAGCAA 57.526 29.630 0.00 0.00 0.00 3.91
6370 6967 9.736023 CCTGGATAAAAATACAATAAGAGCAAC 57.264 33.333 0.00 0.00 0.00 4.17
6373 6970 9.952188 GGATAAAAATACAATAAGAGCAACTCC 57.048 33.333 0.00 0.00 0.00 3.85
6377 6974 8.409358 AAAATACAATAAGAGCAACTCCAACT 57.591 30.769 0.00 0.00 0.00 3.16
6378 6975 6.992063 ATACAATAAGAGCAACTCCAACTG 57.008 37.500 0.00 0.00 0.00 3.16
6379 6976 4.074970 ACAATAAGAGCAACTCCAACTGG 58.925 43.478 0.00 0.00 0.00 4.00
6380 6977 2.185004 TAAGAGCAACTCCAACTGGC 57.815 50.000 0.00 0.00 34.44 4.85
6381 6978 0.538287 AAGAGCAACTCCAACTGGCC 60.538 55.000 0.00 0.00 34.44 5.36
6382 6979 2.281761 AGCAACTCCAACTGGCCG 60.282 61.111 0.00 0.00 34.44 6.13
6383 6980 2.281484 GCAACTCCAACTGGCCGA 60.281 61.111 0.00 0.00 34.44 5.54
6384 6981 2.617274 GCAACTCCAACTGGCCGAC 61.617 63.158 0.00 0.00 34.44 4.79
6385 6982 1.966451 CAACTCCAACTGGCCGACC 60.966 63.158 0.00 0.00 34.44 4.79
6386 6983 2.147387 AACTCCAACTGGCCGACCT 61.147 57.895 0.00 0.00 36.63 3.85
6387 6984 0.834687 AACTCCAACTGGCCGACCTA 60.835 55.000 0.00 0.00 36.63 3.08
6388 6985 0.834687 ACTCCAACTGGCCGACCTAA 60.835 55.000 0.00 0.00 36.63 2.69
6389 6986 0.323629 CTCCAACTGGCCGACCTAAA 59.676 55.000 0.00 0.00 36.63 1.85
6390 6987 0.035739 TCCAACTGGCCGACCTAAAC 59.964 55.000 0.00 0.00 36.63 2.01
6391 6988 1.296056 CCAACTGGCCGACCTAAACG 61.296 60.000 0.00 0.00 36.63 3.60
6398 6995 4.157817 CGACCTAAACGGACGGTG 57.842 61.111 0.00 0.00 45.23 4.94
6399 6996 1.580942 CGACCTAAACGGACGGTGA 59.419 57.895 0.00 0.00 45.23 4.02
6400 6997 0.171903 CGACCTAAACGGACGGTGAT 59.828 55.000 0.00 0.00 45.23 3.06
6401 6998 1.403249 CGACCTAAACGGACGGTGATT 60.403 52.381 0.00 0.00 45.23 2.57
6402 6999 2.691927 GACCTAAACGGACGGTGATTT 58.308 47.619 0.00 0.00 36.31 2.17
6403 7000 3.069289 GACCTAAACGGACGGTGATTTT 58.931 45.455 0.00 0.00 36.31 1.82
6404 7001 2.809696 ACCTAAACGGACGGTGATTTTG 59.190 45.455 0.00 0.00 36.31 2.44
6405 7002 2.809696 CCTAAACGGACGGTGATTTTGT 59.190 45.455 0.00 0.00 33.16 2.83
6406 7003 3.120442 CCTAAACGGACGGTGATTTTGTC 60.120 47.826 0.00 0.00 33.16 3.18
6407 7004 1.232119 AACGGACGGTGATTTTGTCC 58.768 50.000 0.55 0.55 46.91 4.02
6409 7006 1.500396 GGACGGTGATTTTGTCCGC 59.500 57.895 2.72 0.00 46.92 5.54
6410 7007 0.953960 GGACGGTGATTTTGTCCGCT 60.954 55.000 2.72 0.00 46.92 5.52
6411 7008 0.872388 GACGGTGATTTTGTCCGCTT 59.128 50.000 2.72 0.00 46.92 4.68
6412 7009 1.265905 GACGGTGATTTTGTCCGCTTT 59.734 47.619 2.72 0.00 46.92 3.51
6413 7010 1.679153 ACGGTGATTTTGTCCGCTTTT 59.321 42.857 2.72 0.00 46.92 2.27
6414 7011 2.100087 ACGGTGATTTTGTCCGCTTTTT 59.900 40.909 2.72 0.00 46.92 1.94
6415 7012 2.724174 CGGTGATTTTGTCCGCTTTTTC 59.276 45.455 0.00 0.00 37.90 2.29
6416 7013 3.550030 CGGTGATTTTGTCCGCTTTTTCT 60.550 43.478 0.00 0.00 37.90 2.52
6417 7014 3.735746 GGTGATTTTGTCCGCTTTTTCTG 59.264 43.478 0.00 0.00 0.00 3.02
6418 7015 4.359706 GTGATTTTGTCCGCTTTTTCTGT 58.640 39.130 0.00 0.00 0.00 3.41
6419 7016 4.803613 GTGATTTTGTCCGCTTTTTCTGTT 59.196 37.500 0.00 0.00 0.00 3.16
6420 7017 5.290885 GTGATTTTGTCCGCTTTTTCTGTTT 59.709 36.000 0.00 0.00 0.00 2.83
6421 7018 5.290643 TGATTTTGTCCGCTTTTTCTGTTTG 59.709 36.000 0.00 0.00 0.00 2.93
6422 7019 2.861462 TGTCCGCTTTTTCTGTTTGG 57.139 45.000 0.00 0.00 0.00 3.28
6423 7020 2.370349 TGTCCGCTTTTTCTGTTTGGA 58.630 42.857 0.00 0.00 0.00 3.53
6424 7021 2.955660 TGTCCGCTTTTTCTGTTTGGAT 59.044 40.909 0.00 0.00 0.00 3.41
6425 7022 3.004315 TGTCCGCTTTTTCTGTTTGGATC 59.996 43.478 0.00 0.00 0.00 3.36
6426 7023 2.225491 TCCGCTTTTTCTGTTTGGATCG 59.775 45.455 0.00 0.00 0.00 3.69
6427 7024 2.584791 CGCTTTTTCTGTTTGGATCGG 58.415 47.619 0.00 0.00 0.00 4.18
6428 7025 2.328473 GCTTTTTCTGTTTGGATCGGC 58.672 47.619 0.00 0.00 0.00 5.54
6429 7026 2.029918 GCTTTTTCTGTTTGGATCGGCT 60.030 45.455 0.00 0.00 0.00 5.52
6430 7027 3.190535 GCTTTTTCTGTTTGGATCGGCTA 59.809 43.478 0.00 0.00 0.00 3.93
6431 7028 4.672801 GCTTTTTCTGTTTGGATCGGCTAG 60.673 45.833 0.00 0.00 0.00 3.42
6432 7029 2.691409 TTCTGTTTGGATCGGCTAGG 57.309 50.000 0.00 0.00 0.00 3.02
6433 7030 0.178068 TCTGTTTGGATCGGCTAGGC 59.822 55.000 6.15 6.15 0.00 3.93
6434 7031 1.153449 TGTTTGGATCGGCTAGGCG 60.153 57.895 31.00 31.00 0.00 5.52
6435 7032 1.887707 GTTTGGATCGGCTAGGCGG 60.888 63.158 34.63 18.46 0.00 6.13
6436 7033 2.061578 TTTGGATCGGCTAGGCGGA 61.062 57.895 34.63 22.68 41.73 5.54
6437 7034 2.306255 TTTGGATCGGCTAGGCGGAC 62.306 60.000 34.63 26.77 40.43 4.79
6438 7035 3.224324 GGATCGGCTAGGCGGACA 61.224 66.667 34.63 19.00 40.43 4.02
6439 7036 2.027751 GATCGGCTAGGCGGACAC 59.972 66.667 34.63 20.25 40.43 3.67
6440 7037 3.825833 GATCGGCTAGGCGGACACG 62.826 68.421 34.63 9.47 40.43 4.49
6443 7040 4.509737 GGCTAGGCGGACACGGAC 62.510 72.222 0.00 0.00 41.36 4.79
6444 7041 4.849329 GCTAGGCGGACACGGACG 62.849 72.222 0.00 0.00 41.36 4.79
6445 7042 3.437795 CTAGGCGGACACGGACGT 61.438 66.667 0.00 0.00 41.36 4.34
6446 7043 3.392595 CTAGGCGGACACGGACGTC 62.393 68.421 7.13 7.13 41.36 4.34
6448 7045 4.353437 GGCGGACACGGACGTCTT 62.353 66.667 16.46 0.00 41.36 3.01
6449 7046 2.804090 GCGGACACGGACGTCTTC 60.804 66.667 16.46 6.96 41.36 2.87
6450 7047 2.952245 CGGACACGGACGTCTTCT 59.048 61.111 16.46 0.00 36.12 2.85
6451 7048 1.285023 CGGACACGGACGTCTTCTT 59.715 57.895 16.46 0.00 36.12 2.52
6452 7049 0.318445 CGGACACGGACGTCTTCTTT 60.318 55.000 16.46 0.00 36.12 2.52
6453 7050 1.137513 GGACACGGACGTCTTCTTTG 58.862 55.000 16.46 8.01 36.12 2.77
6454 7051 1.537562 GGACACGGACGTCTTCTTTGT 60.538 52.381 16.46 11.05 36.12 2.83
6455 7052 1.521423 GACACGGACGTCTTCTTTGTG 59.479 52.381 16.46 15.43 32.92 3.33
6456 7053 1.134907 ACACGGACGTCTTCTTTGTGT 60.135 47.619 16.46 16.00 33.24 3.72
6457 7054 1.931172 CACGGACGTCTTCTTTGTGTT 59.069 47.619 16.46 0.00 0.00 3.32
6458 7055 2.350498 CACGGACGTCTTCTTTGTGTTT 59.650 45.455 16.46 0.00 0.00 2.83
6459 7056 2.350498 ACGGACGTCTTCTTTGTGTTTG 59.650 45.455 16.46 0.00 0.00 2.93
6460 7057 2.286184 CGGACGTCTTCTTTGTGTTTGG 60.286 50.000 16.46 0.00 0.00 3.28
6461 7058 2.032924 GGACGTCTTCTTTGTGTTTGGG 59.967 50.000 16.46 0.00 0.00 4.12
6462 7059 2.681344 GACGTCTTCTTTGTGTTTGGGT 59.319 45.455 8.70 0.00 0.00 4.51
6463 7060 2.681344 ACGTCTTCTTTGTGTTTGGGTC 59.319 45.455 0.00 0.00 0.00 4.46
6464 7061 2.286184 CGTCTTCTTTGTGTTTGGGTCG 60.286 50.000 0.00 0.00 0.00 4.79
6465 7062 2.032924 GTCTTCTTTGTGTTTGGGTCGG 59.967 50.000 0.00 0.00 0.00 4.79
6466 7063 0.741915 TTCTTTGTGTTTGGGTCGGC 59.258 50.000 0.00 0.00 0.00 5.54
6467 7064 1.008995 CTTTGTGTTTGGGTCGGCG 60.009 57.895 0.00 0.00 0.00 6.46
6468 7065 1.720694 CTTTGTGTTTGGGTCGGCGT 61.721 55.000 6.85 0.00 0.00 5.68
6469 7066 0.463295 TTTGTGTTTGGGTCGGCGTA 60.463 50.000 6.85 0.00 0.00 4.42
6470 7067 0.250381 TTGTGTTTGGGTCGGCGTAT 60.250 50.000 6.85 0.00 0.00 3.06
6471 7068 0.951525 TGTGTTTGGGTCGGCGTATG 60.952 55.000 6.85 0.00 0.00 2.39
6472 7069 1.376166 TGTTTGGGTCGGCGTATGG 60.376 57.895 6.85 0.00 0.00 2.74
6473 7070 2.110352 GTTTGGGTCGGCGTATGGG 61.110 63.158 6.85 0.00 0.00 4.00
6474 7071 3.980442 TTTGGGTCGGCGTATGGGC 62.980 63.158 6.85 0.00 37.98 5.36
6476 7073 4.476752 GGGTCGGCGTATGGGCAA 62.477 66.667 6.85 0.00 42.43 4.52
6477 7074 2.895372 GGTCGGCGTATGGGCAAG 60.895 66.667 6.85 0.00 42.43 4.01
6478 7075 3.573491 GTCGGCGTATGGGCAAGC 61.573 66.667 6.85 0.00 42.43 4.01
6479 7076 4.849310 TCGGCGTATGGGCAAGCC 62.849 66.667 6.85 1.52 45.67 4.35
6491 7088 2.736531 CAAGCCCAACACTTGCCC 59.263 61.111 0.00 0.00 38.23 5.36
6492 7089 2.912025 AAGCCCAACACTTGCCCG 60.912 61.111 0.00 0.00 0.00 6.13
6493 7090 3.429372 AAGCCCAACACTTGCCCGA 62.429 57.895 0.00 0.00 0.00 5.14
6494 7091 3.670377 GCCCAACACTTGCCCGAC 61.670 66.667 0.00 0.00 0.00 4.79
6495 7092 2.983592 CCCAACACTTGCCCGACC 60.984 66.667 0.00 0.00 0.00 4.79
6496 7093 2.983592 CCAACACTTGCCCGACCC 60.984 66.667 0.00 0.00 0.00 4.46
6497 7094 2.203280 CAACACTTGCCCGACCCA 60.203 61.111 0.00 0.00 0.00 4.51
6498 7095 1.603455 CAACACTTGCCCGACCCAT 60.603 57.895 0.00 0.00 0.00 4.00
6499 7096 1.152830 AACACTTGCCCGACCCATT 59.847 52.632 0.00 0.00 0.00 3.16
6500 7097 0.469144 AACACTTGCCCGACCCATTT 60.469 50.000 0.00 0.00 0.00 2.32
6501 7098 0.469144 ACACTTGCCCGACCCATTTT 60.469 50.000 0.00 0.00 0.00 1.82
6502 7099 0.038343 CACTTGCCCGACCCATTTTG 60.038 55.000 0.00 0.00 0.00 2.44
6503 7100 0.178975 ACTTGCCCGACCCATTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
6504 7101 0.243636 CTTGCCCGACCCATTTTGAC 59.756 55.000 0.00 0.00 0.00 3.18
6505 7102 1.519751 TTGCCCGACCCATTTTGACG 61.520 55.000 0.00 0.00 0.00 4.35
6506 7103 2.696759 GCCCGACCCATTTTGACGG 61.697 63.158 0.00 0.00 42.67 4.79
6507 7104 2.696759 CCCGACCCATTTTGACGGC 61.697 63.158 0.00 0.00 41.86 5.68
6508 7105 2.478746 CGACCCATTTTGACGGCG 59.521 61.111 4.80 4.80 0.00 6.46
6509 7106 2.178273 GACCCATTTTGACGGCGC 59.822 61.111 6.90 0.00 0.00 6.53
6510 7107 3.336715 GACCCATTTTGACGGCGCC 62.337 63.158 19.07 19.07 0.00 6.53
6511 7108 4.474846 CCCATTTTGACGGCGCCG 62.475 66.667 44.88 44.88 46.03 6.46
6517 7114 2.895865 TTGACGGCGCCGACAAAA 60.896 55.556 46.86 34.23 46.63 2.44
6546 7143 9.549078 AATATTGTGCATGCATATTTCAAATGA 57.451 25.926 25.64 12.16 0.00 2.57
6547 7144 7.851387 ATTGTGCATGCATATTTCAAATGAA 57.149 28.000 25.64 1.82 0.00 2.57
6548 7145 7.668525 TTGTGCATGCATATTTCAAATGAAA 57.331 28.000 25.64 10.71 46.60 2.69
6549 7146 7.668525 TGTGCATGCATATTTCAAATGAAAA 57.331 28.000 25.64 3.65 45.81 2.29
6550 7147 7.519843 TGTGCATGCATATTTCAAATGAAAAC 58.480 30.769 25.64 4.82 45.81 2.43
6551 7148 7.172703 TGTGCATGCATATTTCAAATGAAAACA 59.827 29.630 25.64 7.63 45.81 2.83
6552 7149 8.016229 GTGCATGCATATTTCAAATGAAAACAA 58.984 29.630 25.64 2.82 45.81 2.83
6553 7150 8.016229 TGCATGCATATTTCAAATGAAAACAAC 58.984 29.630 18.46 4.58 45.81 3.32
6554 7151 8.231837 GCATGCATATTTCAAATGAAAACAACT 58.768 29.630 14.21 0.00 45.81 3.16
6574 7171 8.751302 ACAACTTAATTAAACATTAAAGCCGG 57.249 30.769 0.00 0.00 0.00 6.13
6575 7172 8.361889 ACAACTTAATTAAACATTAAAGCCGGT 58.638 29.630 1.90 0.00 0.00 5.28
6576 7173 8.856247 CAACTTAATTAAACATTAAAGCCGGTC 58.144 33.333 1.90 0.00 0.00 4.79
6577 7174 8.113173 ACTTAATTAAACATTAAAGCCGGTCA 57.887 30.769 1.90 0.00 0.00 4.02
6578 7175 8.241367 ACTTAATTAAACATTAAAGCCGGTCAG 58.759 33.333 1.90 0.00 0.00 3.51
6579 7176 5.576447 ATTAAACATTAAAGCCGGTCAGG 57.424 39.130 1.90 0.00 44.97 3.86
6580 7177 2.871096 AACATTAAAGCCGGTCAGGA 57.129 45.000 1.90 0.00 45.00 3.86
6581 7178 2.871096 ACATTAAAGCCGGTCAGGAA 57.129 45.000 1.90 0.00 45.00 3.36
6582 7179 2.711542 ACATTAAAGCCGGTCAGGAAG 58.288 47.619 1.90 0.00 45.00 3.46
6583 7180 2.017049 CATTAAAGCCGGTCAGGAAGG 58.983 52.381 1.90 0.00 45.00 3.46
6591 7188 4.821589 GTCAGGAAGGCCGGCGAG 62.822 72.222 22.54 6.20 39.96 5.03
6593 7190 4.521062 CAGGAAGGCCGGCGAGAG 62.521 72.222 22.54 3.92 39.96 3.20
6595 7192 4.516195 GGAAGGCCGGCGAGAGTC 62.516 72.222 22.54 12.33 0.00 3.36
6596 7193 4.516195 GAAGGCCGGCGAGAGTCC 62.516 72.222 22.54 4.09 0.00 3.85
6605 7202 3.733960 CGAGAGTCCACGCGTCCA 61.734 66.667 9.86 0.00 0.00 4.02
6606 7203 2.126424 GAGAGTCCACGCGTCCAC 60.126 66.667 9.86 9.15 0.00 4.02
6607 7204 2.910479 AGAGTCCACGCGTCCACA 60.910 61.111 9.86 0.00 0.00 4.17
6608 7205 2.214181 GAGAGTCCACGCGTCCACAT 62.214 60.000 9.86 1.40 0.00 3.21
6609 7206 1.374252 GAGTCCACGCGTCCACATT 60.374 57.895 9.86 0.00 0.00 2.71
6610 7207 0.108992 GAGTCCACGCGTCCACATTA 60.109 55.000 9.86 0.00 0.00 1.90
6611 7208 0.108804 AGTCCACGCGTCCACATTAG 60.109 55.000 9.86 0.00 0.00 1.73
6612 7209 1.447140 TCCACGCGTCCACATTAGC 60.447 57.895 9.86 0.00 0.00 3.09
6613 7210 1.739929 CCACGCGTCCACATTAGCA 60.740 57.895 9.86 0.00 0.00 3.49
6614 7211 1.089481 CCACGCGTCCACATTAGCAT 61.089 55.000 9.86 0.00 0.00 3.79
6615 7212 0.726827 CACGCGTCCACATTAGCATT 59.273 50.000 9.86 0.00 0.00 3.56
6616 7213 1.930503 CACGCGTCCACATTAGCATTA 59.069 47.619 9.86 0.00 0.00 1.90
6617 7214 2.350192 CACGCGTCCACATTAGCATTAA 59.650 45.455 9.86 0.00 0.00 1.40
6618 7215 3.004171 ACGCGTCCACATTAGCATTAAA 58.996 40.909 5.58 0.00 0.00 1.52
6619 7216 3.437395 ACGCGTCCACATTAGCATTAAAA 59.563 39.130 5.58 0.00 0.00 1.52
6620 7217 4.028383 CGCGTCCACATTAGCATTAAAAG 58.972 43.478 0.00 0.00 0.00 2.27
6621 7218 4.201773 CGCGTCCACATTAGCATTAAAAGA 60.202 41.667 0.00 0.00 0.00 2.52
6622 7219 5.636837 GCGTCCACATTAGCATTAAAAGAA 58.363 37.500 0.00 0.00 0.00 2.52
6623 7220 6.090129 GCGTCCACATTAGCATTAAAAGAAA 58.910 36.000 0.00 0.00 0.00 2.52
6624 7221 6.751888 GCGTCCACATTAGCATTAAAAGAAAT 59.248 34.615 0.00 0.00 0.00 2.17
6625 7222 7.275560 GCGTCCACATTAGCATTAAAAGAAATT 59.724 33.333 0.00 0.00 0.00 1.82
6626 7223 9.781834 CGTCCACATTAGCATTAAAAGAAATTA 57.218 29.630 0.00 0.00 0.00 1.40
6644 7241 9.768662 AAGAAATTAGAAACAACCTAACTACGA 57.231 29.630 0.00 0.00 0.00 3.43
6645 7242 9.420551 AGAAATTAGAAACAACCTAACTACGAG 57.579 33.333 0.00 0.00 0.00 4.18
6646 7243 8.543862 AAATTAGAAACAACCTAACTACGAGG 57.456 34.615 0.00 0.00 40.22 4.63
6647 7244 3.922910 AGAAACAACCTAACTACGAGGC 58.077 45.455 0.00 0.00 37.63 4.70
6648 7245 3.322828 AGAAACAACCTAACTACGAGGCA 59.677 43.478 0.00 0.00 37.63 4.75
6649 7246 3.314541 AACAACCTAACTACGAGGCAG 57.685 47.619 0.00 0.00 37.63 4.85
6650 7247 1.067071 ACAACCTAACTACGAGGCAGC 60.067 52.381 0.00 0.00 37.63 5.25
6651 7248 0.172803 AACCTAACTACGAGGCAGCG 59.827 55.000 0.00 0.00 37.63 5.18
6652 7249 1.589196 CCTAACTACGAGGCAGCGC 60.589 63.158 0.00 0.00 33.86 5.92
6653 7250 1.939785 CTAACTACGAGGCAGCGCG 60.940 63.158 0.00 0.00 33.86 6.86
6684 7281 1.447643 CCCTAGGCAACATCCTCGG 59.552 63.158 2.05 0.00 38.46 4.63
6685 7282 1.447643 CCTAGGCAACATCCTCGGG 59.552 63.158 0.00 0.00 35.91 5.14
6686 7283 1.447643 CTAGGCAACATCCTCGGGG 59.552 63.158 0.00 0.00 37.66 5.73
6687 7284 1.306654 TAGGCAACATCCTCGGGGT 60.307 57.895 0.00 0.00 37.66 4.95
6688 7285 1.622607 TAGGCAACATCCTCGGGGTG 61.623 60.000 0.00 1.14 37.66 4.61
6689 7286 2.438434 GCAACATCCTCGGGGTGG 60.438 66.667 0.00 0.00 0.00 4.61
6690 7287 2.272146 CAACATCCTCGGGGTGGG 59.728 66.667 0.00 0.00 0.00 4.61
6691 7288 2.204090 AACATCCTCGGGGTGGGT 60.204 61.111 0.00 0.00 0.00 4.51
6692 7289 2.602676 AACATCCTCGGGGTGGGTG 61.603 63.158 0.00 0.00 41.27 4.61
6693 7290 2.687200 CATCCTCGGGGTGGGTGA 60.687 66.667 0.00 0.00 37.90 4.02
6694 7291 2.365635 ATCCTCGGGGTGGGTGAG 60.366 66.667 0.00 0.00 0.00 3.51
6697 7294 3.391382 CTCGGGGTGGGTGAGGTC 61.391 72.222 0.00 0.00 0.00 3.85
6700 7297 2.687566 GGGGTGGGTGAGGTCGAT 60.688 66.667 0.00 0.00 0.00 3.59
6701 7298 2.584608 GGGTGGGTGAGGTCGATG 59.415 66.667 0.00 0.00 0.00 3.84
6702 7299 1.987855 GGGTGGGTGAGGTCGATGA 60.988 63.158 0.00 0.00 0.00 2.92
6703 7300 1.517832 GGTGGGTGAGGTCGATGAG 59.482 63.158 0.00 0.00 0.00 2.90
6704 7301 1.153549 GTGGGTGAGGTCGATGAGC 60.154 63.158 0.00 0.00 0.00 4.26
6705 7302 2.105128 GGGTGAGGTCGATGAGCG 59.895 66.667 0.00 0.00 42.69 5.03
6706 7303 2.711922 GGGTGAGGTCGATGAGCGT 61.712 63.158 0.00 0.00 41.80 5.07
6707 7304 1.226717 GGTGAGGTCGATGAGCGTC 60.227 63.158 0.00 0.00 41.80 5.19
6708 7305 1.583967 GTGAGGTCGATGAGCGTCG 60.584 63.158 5.78 5.78 42.74 5.12
6709 7306 2.024871 GAGGTCGATGAGCGTCGG 59.975 66.667 11.67 0.00 41.74 4.79
6710 7307 4.194720 AGGTCGATGAGCGTCGGC 62.195 66.667 11.67 9.94 44.95 5.54
6739 7336 4.636435 CCAGGGGAACGCCGTGTT 62.636 66.667 0.00 0.00 44.92 3.32
6757 7354 4.155733 CCAGGCGGTGGCGATGTA 62.156 66.667 0.00 0.00 40.39 2.29
6758 7355 2.586079 CAGGCGGTGGCGATGTAG 60.586 66.667 0.00 0.00 41.24 2.74
6759 7356 3.849951 AGGCGGTGGCGATGTAGG 61.850 66.667 0.00 0.00 41.24 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.373707 GGCTGAGCTCCTCCATGGT 61.374 63.158 12.58 0.00 37.07 3.55
229 230 0.704076 CTTCCCAACCCTCCATCCAA 59.296 55.000 0.00 0.00 0.00 3.53
233 234 1.918957 CTCTTCTTCCCAACCCTCCAT 59.081 52.381 0.00 0.00 0.00 3.41
279 323 2.919666 AAAGGAAATTGATGTCCGCG 57.080 45.000 0.00 0.00 39.06 6.46
302 349 1.973281 AATCACGCAAGGCCCACAG 60.973 57.895 0.00 0.00 46.39 3.66
303 350 2.115052 AATCACGCAAGGCCCACA 59.885 55.556 0.00 0.00 46.39 4.17
304 351 2.568090 CAATCACGCAAGGCCCAC 59.432 61.111 0.00 0.00 46.39 4.61
305 352 2.676121 CCAATCACGCAAGGCCCA 60.676 61.111 0.00 0.00 46.39 5.36
306 353 2.361104 TCCAATCACGCAAGGCCC 60.361 61.111 0.00 0.00 46.39 5.80
308 355 1.372087 CTCCTCCAATCACGCAAGGC 61.372 60.000 0.00 0.00 46.39 4.35
309 356 0.745845 CCTCCTCCAATCACGCAAGG 60.746 60.000 0.00 0.00 46.39 3.61
335 383 0.179059 TATGATCACGCACCCGCATT 60.179 50.000 0.00 0.00 38.40 3.56
340 388 0.034059 CTCCCTATGATCACGCACCC 59.966 60.000 0.00 0.00 0.00 4.61
341 389 0.034059 CCTCCCTATGATCACGCACC 59.966 60.000 0.00 0.00 0.00 5.01
352 400 4.936081 CCGGTCCGGCCTCCCTAT 62.936 72.222 19.48 0.00 41.17 2.57
362 411 1.066918 CCCTCGAATTACCGGTCCG 59.933 63.158 12.40 11.43 0.00 4.79
372 421 1.354368 TCCAAAAGCCTTCCCTCGAAT 59.646 47.619 0.00 0.00 0.00 3.34
383 432 2.507407 TACTCCACCATCCAAAAGCC 57.493 50.000 0.00 0.00 0.00 4.35
388 437 2.505407 CTGACCATACTCCACCATCCAA 59.495 50.000 0.00 0.00 0.00 3.53
403 452 2.487762 GGCAATTTTCGATGACTGACCA 59.512 45.455 0.00 0.00 0.00 4.02
424 473 5.633830 AATAGCTTCATTGTGTGGACTTG 57.366 39.130 0.00 0.00 0.00 3.16
434 483 7.392418 TCATCCCTGATCTAATAGCTTCATTG 58.608 38.462 0.00 0.00 0.00 2.82
435 484 7.565190 TCATCCCTGATCTAATAGCTTCATT 57.435 36.000 0.00 0.00 0.00 2.57
438 487 7.393216 ACAATCATCCCTGATCTAATAGCTTC 58.607 38.462 0.00 0.00 41.34 3.86
439 488 7.327064 ACAATCATCCCTGATCTAATAGCTT 57.673 36.000 0.00 0.00 41.34 3.74
451 500 8.350722 CAAATCTCAATCTAACAATCATCCCTG 58.649 37.037 0.00 0.00 0.00 4.45
453 502 8.133627 CACAAATCTCAATCTAACAATCATCCC 58.866 37.037 0.00 0.00 0.00 3.85
460 509 6.542821 AGACCCACAAATCTCAATCTAACAA 58.457 36.000 0.00 0.00 0.00 2.83
461 510 6.126863 AGACCCACAAATCTCAATCTAACA 57.873 37.500 0.00 0.00 0.00 2.41
492 541 0.179235 CGCACGAACCATAAACACCG 60.179 55.000 0.00 0.00 0.00 4.94
517 566 2.849943 TGTACCTCACAATTAGCCCCAT 59.150 45.455 0.00 0.00 32.95 4.00
532 581 8.571336 CAAACAAGAATTTTCTCAGATGTACCT 58.429 33.333 0.00 0.00 36.28 3.08
536 585 9.472361 CAATCAAACAAGAATTTTCTCAGATGT 57.528 29.630 0.00 0.00 36.28 3.06
539 588 9.874205 AAACAATCAAACAAGAATTTTCTCAGA 57.126 25.926 0.00 0.00 36.28 3.27
609 658 9.933723 CTTCCAGAATTTTTAACATCCATTTCT 57.066 29.630 0.00 0.00 0.00 2.52
610 659 9.927668 TCTTCCAGAATTTTTAACATCCATTTC 57.072 29.630 0.00 0.00 0.00 2.17
697 746 4.553330 TGTCAGGGACCAAGAAGAATAC 57.447 45.455 0.00 0.00 0.00 1.89
712 762 6.449698 GGCAAAATGGTAATATGATGTCAGG 58.550 40.000 0.00 0.00 0.00 3.86
749 799 2.226330 CAAATGACGGGTTGAGTCCAA 58.774 47.619 0.00 0.00 37.80 3.53
776 826 3.047877 GGTGTGTTCGGCCTTCGG 61.048 66.667 0.00 0.00 39.77 4.30
777 827 2.280524 TGGTGTGTTCGGCCTTCG 60.281 61.111 0.00 0.00 40.90 3.79
778 828 1.525077 TGTGGTGTGTTCGGCCTTC 60.525 57.895 0.00 0.00 0.00 3.46
779 829 1.822186 GTGTGGTGTGTTCGGCCTT 60.822 57.895 0.00 0.00 0.00 4.35
780 830 2.203153 GTGTGGTGTGTTCGGCCT 60.203 61.111 0.00 0.00 0.00 5.19
781 831 3.284449 GGTGTGGTGTGTTCGGCC 61.284 66.667 0.00 0.00 0.00 6.13
821 871 2.338620 CCTGCTGTTCACGACGGA 59.661 61.111 0.00 0.00 36.72 4.69
944 1002 1.452801 GAACGGAACCCCCACTTCA 59.547 57.895 0.00 0.00 34.14 3.02
951 1009 4.011517 TGGAGCGAACGGAACCCC 62.012 66.667 0.00 0.00 0.00 4.95
1167 1227 5.651530 TGCTTTCGATCTACACTTCCTTAG 58.348 41.667 0.00 0.00 0.00 2.18
1169 1229 4.537135 TGCTTTCGATCTACACTTCCTT 57.463 40.909 0.00 0.00 0.00 3.36
1175 1235 6.403615 CGATAAACTTGCTTTCGATCTACAC 58.596 40.000 0.00 0.00 31.74 2.90
1198 1262 1.595093 GAAACACCATTGAGCCCCCG 61.595 60.000 0.00 0.00 0.00 5.73
1251 1315 6.954102 AGAACAAAAATACTAAAGCCCCATCT 59.046 34.615 0.00 0.00 0.00 2.90
1348 1721 9.123709 GCACAGAAAATTAAATAAACATCGTGA 57.876 29.630 0.00 0.00 0.00 4.35
1368 1741 2.942752 GCCAATCTCCTCAATGCACAGA 60.943 50.000 0.00 0.00 0.00 3.41
1383 1756 0.029834 GCACGATGACCATGCCAATC 59.970 55.000 0.00 0.00 33.06 2.67
1411 1784 6.872920 AGTGACTCTTGAGACATTTAGATCC 58.127 40.000 4.49 0.00 0.00 3.36
1412 1785 9.862371 TTAAGTGACTCTTGAGACATTTAGATC 57.138 33.333 13.72 0.00 37.56 2.75
1413 1786 9.868277 CTTAAGTGACTCTTGAGACATTTAGAT 57.132 33.333 13.72 0.00 40.71 1.98
1415 1788 9.868277 ATCTTAAGTGACTCTTGAGACATTTAG 57.132 33.333 12.36 10.36 46.45 1.85
1416 1789 9.645059 CATCTTAAGTGACTCTTGAGACATTTA 57.355 33.333 12.36 11.48 46.45 1.40
1417 1790 8.153550 ACATCTTAAGTGACTCTTGAGACATTT 58.846 33.333 12.36 12.96 46.45 2.32
1430 1803 7.806690 TGTATTGCAGAAACATCTTAAGTGAC 58.193 34.615 1.63 0.00 0.00 3.67
1438 1811 5.255687 TCACCATGTATTGCAGAAACATCT 58.744 37.500 7.46 0.00 31.60 2.90
1530 1903 7.327975 TCACTCATCACGTTTAGTATTGGAAT 58.672 34.615 0.00 0.00 0.00 3.01
1589 1962 8.085296 TCTTTCTTGATCTCACTGTTCTTAGAC 58.915 37.037 0.00 0.00 0.00 2.59
1648 2021 7.059788 ACAAATGTCAGCACAATGGGTATATA 58.940 34.615 0.00 0.00 35.64 0.86
1649 2022 5.893255 ACAAATGTCAGCACAATGGGTATAT 59.107 36.000 0.00 0.00 35.64 0.86
1828 2201 4.293901 ACAATAAGGGGAGGCTAGGAAAAA 59.706 41.667 0.00 0.00 0.00 1.94
1873 2246 7.473735 TTCATGGCATACAAAACTAAATGGA 57.526 32.000 0.00 0.00 0.00 3.41
2004 2377 9.444600 GAATTTAGTTCAATGGTACCACTAGAA 57.555 33.333 19.09 17.81 36.80 2.10
2223 2604 6.015095 CCCTCTTTACCTGCAGAAAAAGAATT 60.015 38.462 28.30 5.11 37.47 2.17
2543 2924 1.541588 GGCTGTGAAAGACAATCCCAC 59.458 52.381 0.00 0.00 32.80 4.61
2776 3157 3.306989 CCCTCTGTGCTAACTCATGAACA 60.307 47.826 0.00 0.00 0.00 3.18
2913 3294 5.913137 TTTTCAGAGAGGACAAAAAGCAA 57.087 34.783 0.00 0.00 0.00 3.91
2917 3298 7.278424 CAGCAAAATTTTCAGAGAGGACAAAAA 59.722 33.333 0.00 0.00 0.00 1.94
2925 3306 7.642669 TGAAGTACAGCAAAATTTTCAGAGAG 58.357 34.615 0.00 0.00 0.00 3.20
2926 3307 7.566760 TGAAGTACAGCAAAATTTTCAGAGA 57.433 32.000 0.00 0.00 0.00 3.10
2974 3355 4.624024 CCTGCTCAAAACAGTGCAATTATG 59.376 41.667 0.00 0.00 37.53 1.90
2978 3359 2.295349 CTCCTGCTCAAAACAGTGCAAT 59.705 45.455 0.00 0.00 37.53 3.56
3255 3636 3.243035 GGCATTTGGGCACTTTGTTTTTC 60.243 43.478 0.00 0.00 42.77 2.29
3259 3640 0.108396 GGGCATTTGGGCACTTTGTT 59.892 50.000 0.00 0.00 45.66 2.83
3276 3657 3.841255 GGAGTGATTCCTAGATAAGGGGG 59.159 52.174 0.00 0.00 46.55 5.40
3383 3766 5.333492 CGTTTAACCGCTTATGTTTCAGTCA 60.333 40.000 0.00 0.00 0.00 3.41
3635 4019 5.183140 TGATGAAGCGATACGGAATATGAGA 59.817 40.000 0.00 0.00 0.00 3.27
3646 4030 3.492383 CAGGACACATGATGAAGCGATAC 59.508 47.826 0.00 0.00 0.00 2.24
3651 4035 1.456296 TGCAGGACACATGATGAAGC 58.544 50.000 0.00 0.00 0.00 3.86
3791 4175 2.691409 TGAGACCATCACCGGAATTC 57.309 50.000 9.46 0.00 31.12 2.17
3990 4374 9.569167 GACAAAGGTATAAAGGCATAAGAAAAC 57.431 33.333 0.00 0.00 0.00 2.43
4015 4399 2.971660 TCCAGAACAAACGTGACAGA 57.028 45.000 0.00 0.00 0.00 3.41
4027 4411 7.012799 AGTCAGAACTTCATCTTTTTCCAGAAC 59.987 37.037 0.00 0.00 28.74 3.01
4258 4652 5.298989 TGTACCTCCAAAGTTCTAGCAAA 57.701 39.130 0.00 0.00 0.00 3.68
4262 4656 4.192317 GGCATGTACCTCCAAAGTTCTAG 58.808 47.826 0.00 0.00 0.00 2.43
4424 4818 8.526147 TGCTAACTCGATTAAGGTAAAGTAAGT 58.474 33.333 0.00 0.00 0.00 2.24
4549 4943 3.217626 CATGATAAACTGAAGGAGGGCC 58.782 50.000 0.00 0.00 0.00 5.80
4587 4981 9.121517 CAATTCCTGCATAATCATACGAAATTC 57.878 33.333 0.00 0.00 0.00 2.17
4761 5155 3.432252 GGAATAGCGCATACACCACATAC 59.568 47.826 11.47 0.00 0.00 2.39
4803 5197 9.947433 ATGATAAGCAAGGATTTGAAAATGAAA 57.053 25.926 0.00 0.00 36.36 2.69
4816 5210 8.902806 CCATTTTAGTAACATGATAAGCAAGGA 58.097 33.333 10.07 0.00 0.00 3.36
4942 5373 6.036517 GCATAATATAGATCACCCTTTGAGCG 59.963 42.308 0.00 0.00 45.93 5.03
4974 5405 5.039920 ACCTGAAATACATAGCATGCAGA 57.960 39.130 21.98 7.72 0.00 4.26
5013 5445 8.815565 TTCCTAACAAGCATATATTTGGACAA 57.184 30.769 2.94 0.00 0.00 3.18
5074 5506 0.323725 TTGGGCCAGGATTTCTCAGC 60.324 55.000 6.23 0.00 0.00 4.26
5126 5558 0.755686 GCCACCCAAAAACATGTCCA 59.244 50.000 0.00 0.00 0.00 4.02
5170 5602 0.179037 CCAGCCGTCACATCCATGAT 60.179 55.000 0.00 0.00 0.00 2.45
5229 5661 3.866910 TGTAACACAGAACGTTTGAGGAC 59.133 43.478 0.46 5.56 0.00 3.85
5233 5665 7.079182 AGAAAATGTAACACAGAACGTTTGA 57.921 32.000 0.46 0.00 35.54 2.69
5477 5911 1.437397 AGGGAGTGGTTTCCGGTTTA 58.563 50.000 0.00 0.00 38.17 2.01
5663 6099 0.878523 TCCGCCAACAGACAAAGACG 60.879 55.000 0.00 0.00 0.00 4.18
5665 6101 1.522668 CATCCGCCAACAGACAAAGA 58.477 50.000 0.00 0.00 0.00 2.52
5745 6181 2.311463 ACGTCTGGGAGGATGTATGAG 58.689 52.381 0.00 0.00 34.17 2.90
5823 6259 1.385347 TTCACATAGGGCCGGGGAT 60.385 57.895 2.18 0.00 0.00 3.85
5824 6260 2.041430 TTCACATAGGGCCGGGGA 59.959 61.111 2.18 0.00 0.00 4.81
5834 6270 7.119699 CCAGAAGTTAGATTGCAAGTTCACATA 59.880 37.037 4.94 0.00 37.65 2.29
5835 6271 6.072286 CCAGAAGTTAGATTGCAAGTTCACAT 60.072 38.462 4.94 0.00 37.65 3.21
5836 6272 5.239306 CCAGAAGTTAGATTGCAAGTTCACA 59.761 40.000 4.94 0.00 37.65 3.58
5837 6273 5.335191 CCCAGAAGTTAGATTGCAAGTTCAC 60.335 44.000 4.94 0.00 37.65 3.18
5838 6274 4.761739 CCCAGAAGTTAGATTGCAAGTTCA 59.238 41.667 4.94 0.00 37.65 3.18
5870 6306 4.383602 CGGAACAAGCAACGCCGG 62.384 66.667 0.00 0.00 38.40 6.13
5872 6308 2.344521 AAACCGGAACAAGCAACGCC 62.345 55.000 9.46 0.00 0.00 5.68
5963 6399 0.328258 AACGCTACAGCCCTGGATTT 59.672 50.000 0.00 0.00 37.91 2.17
5973 6409 3.150848 TGCTGAGTCATAACGCTACAG 57.849 47.619 0.00 0.00 0.00 2.74
5986 6422 0.877071 CCAAAACGCTCATGCTGAGT 59.123 50.000 12.71 0.00 45.94 3.41
6046 6482 5.998363 AGAGGAACAGTTTCATGTTAAGTCC 59.002 40.000 0.00 0.00 43.32 3.85
6070 6506 2.965831 GCATATCTGACCCAGACTACCA 59.034 50.000 0.00 0.00 43.63 3.25
6072 6508 3.639094 ACAGCATATCTGACCCAGACTAC 59.361 47.826 0.00 0.00 43.63 2.73
6151 6587 4.408596 TCCACACTTATCTGATATGCACCA 59.591 41.667 9.70 0.00 0.00 4.17
6152 6588 4.960938 TCCACACTTATCTGATATGCACC 58.039 43.478 9.70 0.00 0.00 5.01
6157 6593 5.698089 CGCATGTTCCACACTTATCTGATAT 59.302 40.000 0.00 0.00 0.00 1.63
6182 6618 8.314751 TCCTTCCTGAATAGACTCTTGTTTTAG 58.685 37.037 0.00 0.00 0.00 1.85
6235 6675 3.054878 CCTTCAACACCACTGTACGTAC 58.945 50.000 18.90 18.90 0.00 3.67
6241 6681 1.416401 ACGATCCTTCAACACCACTGT 59.584 47.619 0.00 0.00 0.00 3.55
6310 6903 7.052142 AGACCATATCTCCTACCGTAAAAAG 57.948 40.000 0.00 0.00 28.16 2.27
6322 6918 4.023021 GGTACACTCGAAGACCATATCTCC 60.023 50.000 0.00 0.00 36.27 3.71
6367 6964 1.966451 GGTCGGCCAGTTGGAGTTG 60.966 63.158 0.00 0.00 37.39 3.16
6368 6965 0.834687 TAGGTCGGCCAGTTGGAGTT 60.835 55.000 9.71 0.00 37.39 3.01
6369 6966 0.834687 TTAGGTCGGCCAGTTGGAGT 60.835 55.000 9.71 0.00 37.39 3.85
6370 6967 0.323629 TTTAGGTCGGCCAGTTGGAG 59.676 55.000 9.71 0.00 37.39 3.86
6371 6968 0.035739 GTTTAGGTCGGCCAGTTGGA 59.964 55.000 9.71 0.00 37.39 3.53
6372 6969 1.296056 CGTTTAGGTCGGCCAGTTGG 61.296 60.000 9.71 0.00 37.19 3.77
6373 6970 1.296056 CCGTTTAGGTCGGCCAGTTG 61.296 60.000 9.71 0.00 41.48 3.16
6374 6971 1.004200 CCGTTTAGGTCGGCCAGTT 60.004 57.895 9.71 0.00 41.48 3.16
6375 6972 1.909781 TCCGTTTAGGTCGGCCAGT 60.910 57.895 9.71 0.00 46.49 4.00
6376 6973 1.447314 GTCCGTTTAGGTCGGCCAG 60.447 63.158 9.71 0.00 46.49 4.85
6377 6974 2.658422 GTCCGTTTAGGTCGGCCA 59.342 61.111 9.71 0.00 46.49 5.36
6378 6975 2.507769 CGTCCGTTTAGGTCGGCC 60.508 66.667 0.00 0.00 45.53 6.13
6382 6979 2.375173 AATCACCGTCCGTTTAGGTC 57.625 50.000 0.00 0.00 41.99 3.85
6383 6980 2.809696 CAAAATCACCGTCCGTTTAGGT 59.190 45.455 0.00 0.00 41.99 3.08
6384 6981 2.809696 ACAAAATCACCGTCCGTTTAGG 59.190 45.455 0.00 0.00 42.97 2.69
6385 6982 3.120442 GGACAAAATCACCGTCCGTTTAG 60.120 47.826 0.00 0.00 39.86 1.85
6386 6983 2.807392 GGACAAAATCACCGTCCGTTTA 59.193 45.455 0.00 0.00 39.86 2.01
6387 6984 1.605232 GGACAAAATCACCGTCCGTTT 59.395 47.619 0.00 0.00 39.86 3.60
6388 6985 1.232119 GGACAAAATCACCGTCCGTT 58.768 50.000 0.00 0.00 39.86 4.44
6389 6986 2.922779 GGACAAAATCACCGTCCGT 58.077 52.632 0.00 0.00 39.86 4.69
6391 6988 0.953960 AGCGGACAAAATCACCGTCC 60.954 55.000 0.00 0.00 46.95 4.79
6392 6989 0.872388 AAGCGGACAAAATCACCGTC 59.128 50.000 0.00 0.00 46.95 4.79
6393 6990 1.314730 AAAGCGGACAAAATCACCGT 58.685 45.000 0.00 0.00 46.95 4.83
6395 6992 3.735746 CAGAAAAAGCGGACAAAATCACC 59.264 43.478 0.00 0.00 0.00 4.02
6396 6993 4.359706 ACAGAAAAAGCGGACAAAATCAC 58.640 39.130 0.00 0.00 0.00 3.06
6397 6994 4.647424 ACAGAAAAAGCGGACAAAATCA 57.353 36.364 0.00 0.00 0.00 2.57
6398 6995 5.276820 CCAAACAGAAAAAGCGGACAAAATC 60.277 40.000 0.00 0.00 0.00 2.17
6399 6996 4.570369 CCAAACAGAAAAAGCGGACAAAAT 59.430 37.500 0.00 0.00 0.00 1.82
6400 6997 3.929610 CCAAACAGAAAAAGCGGACAAAA 59.070 39.130 0.00 0.00 0.00 2.44
6401 6998 3.193691 TCCAAACAGAAAAAGCGGACAAA 59.806 39.130 0.00 0.00 0.00 2.83
6402 6999 2.755655 TCCAAACAGAAAAAGCGGACAA 59.244 40.909 0.00 0.00 0.00 3.18
6403 7000 2.370349 TCCAAACAGAAAAAGCGGACA 58.630 42.857 0.00 0.00 0.00 4.02
6404 7001 3.565516 GATCCAAACAGAAAAAGCGGAC 58.434 45.455 0.00 0.00 0.00 4.79
6405 7002 2.225491 CGATCCAAACAGAAAAAGCGGA 59.775 45.455 0.00 0.00 0.00 5.54
6406 7003 2.584791 CGATCCAAACAGAAAAAGCGG 58.415 47.619 0.00 0.00 0.00 5.52
6407 7004 2.584791 CCGATCCAAACAGAAAAAGCG 58.415 47.619 0.00 0.00 0.00 4.68
6408 7005 2.029918 AGCCGATCCAAACAGAAAAAGC 60.030 45.455 0.00 0.00 0.00 3.51
6409 7006 3.923017 AGCCGATCCAAACAGAAAAAG 57.077 42.857 0.00 0.00 0.00 2.27
6410 7007 3.756434 CCTAGCCGATCCAAACAGAAAAA 59.244 43.478 0.00 0.00 0.00 1.94
6411 7008 3.343617 CCTAGCCGATCCAAACAGAAAA 58.656 45.455 0.00 0.00 0.00 2.29
6412 7009 2.939640 GCCTAGCCGATCCAAACAGAAA 60.940 50.000 0.00 0.00 0.00 2.52
6413 7010 1.406887 GCCTAGCCGATCCAAACAGAA 60.407 52.381 0.00 0.00 0.00 3.02
6414 7011 0.178068 GCCTAGCCGATCCAAACAGA 59.822 55.000 0.00 0.00 0.00 3.41
6415 7012 1.154205 CGCCTAGCCGATCCAAACAG 61.154 60.000 0.00 0.00 0.00 3.16
6416 7013 1.153449 CGCCTAGCCGATCCAAACA 60.153 57.895 0.00 0.00 0.00 2.83
6417 7014 1.887707 CCGCCTAGCCGATCCAAAC 60.888 63.158 0.00 0.00 0.00 2.93
6418 7015 2.061578 TCCGCCTAGCCGATCCAAA 61.062 57.895 0.00 0.00 0.00 3.28
6419 7016 2.443203 TCCGCCTAGCCGATCCAA 60.443 61.111 0.00 0.00 0.00 3.53
6420 7017 3.224324 GTCCGCCTAGCCGATCCA 61.224 66.667 0.00 0.00 0.00 3.41
6421 7018 3.224324 TGTCCGCCTAGCCGATCC 61.224 66.667 0.00 0.00 0.00 3.36
6422 7019 2.027751 GTGTCCGCCTAGCCGATC 59.972 66.667 0.00 0.00 0.00 3.69
6423 7020 3.900892 CGTGTCCGCCTAGCCGAT 61.901 66.667 0.00 0.00 0.00 4.18
6426 7023 4.509737 GTCCGTGTCCGCCTAGCC 62.510 72.222 0.00 0.00 0.00 3.93
6427 7024 4.849329 CGTCCGTGTCCGCCTAGC 62.849 72.222 0.00 0.00 0.00 3.42
6428 7025 3.392595 GACGTCCGTGTCCGCCTAG 62.393 68.421 3.51 0.00 32.61 3.02
6429 7026 3.434319 GACGTCCGTGTCCGCCTA 61.434 66.667 3.51 0.00 32.61 3.93
6431 7028 4.353437 AAGACGTCCGTGTCCGCC 62.353 66.667 13.01 0.00 39.77 6.13
6432 7029 2.744307 AAGAAGACGTCCGTGTCCGC 62.744 60.000 13.01 0.00 39.77 5.54
6433 7030 0.318445 AAAGAAGACGTCCGTGTCCG 60.318 55.000 13.01 0.00 39.77 4.79
6434 7031 1.137513 CAAAGAAGACGTCCGTGTCC 58.862 55.000 13.01 0.00 39.77 4.02
6435 7032 1.521423 CACAAAGAAGACGTCCGTGTC 59.479 52.381 13.01 5.01 39.21 3.67
6436 7033 1.134907 ACACAAAGAAGACGTCCGTGT 60.135 47.619 13.01 12.80 32.56 4.49
6437 7034 1.567504 ACACAAAGAAGACGTCCGTG 58.432 50.000 13.01 12.20 0.00 4.94
6438 7035 2.304751 AACACAAAGAAGACGTCCGT 57.695 45.000 13.01 0.00 0.00 4.69
6439 7036 2.286184 CCAAACACAAAGAAGACGTCCG 60.286 50.000 13.01 0.00 0.00 4.79
6440 7037 2.032924 CCCAAACACAAAGAAGACGTCC 59.967 50.000 13.01 0.00 0.00 4.79
6441 7038 2.681344 ACCCAAACACAAAGAAGACGTC 59.319 45.455 7.70 7.70 0.00 4.34
6442 7039 2.681344 GACCCAAACACAAAGAAGACGT 59.319 45.455 0.00 0.00 0.00 4.34
6443 7040 2.286184 CGACCCAAACACAAAGAAGACG 60.286 50.000 0.00 0.00 0.00 4.18
6444 7041 2.032924 CCGACCCAAACACAAAGAAGAC 59.967 50.000 0.00 0.00 0.00 3.01
6445 7042 2.294074 CCGACCCAAACACAAAGAAGA 58.706 47.619 0.00 0.00 0.00 2.87
6446 7043 1.269051 GCCGACCCAAACACAAAGAAG 60.269 52.381 0.00 0.00 0.00 2.85
6447 7044 0.741915 GCCGACCCAAACACAAAGAA 59.258 50.000 0.00 0.00 0.00 2.52
6448 7045 1.440938 CGCCGACCCAAACACAAAGA 61.441 55.000 0.00 0.00 0.00 2.52
6449 7046 1.008995 CGCCGACCCAAACACAAAG 60.009 57.895 0.00 0.00 0.00 2.77
6450 7047 0.463295 TACGCCGACCCAAACACAAA 60.463 50.000 0.00 0.00 0.00 2.83
6451 7048 0.250381 ATACGCCGACCCAAACACAA 60.250 50.000 0.00 0.00 0.00 3.33
6452 7049 0.951525 CATACGCCGACCCAAACACA 60.952 55.000 0.00 0.00 0.00 3.72
6453 7050 1.641123 CCATACGCCGACCCAAACAC 61.641 60.000 0.00 0.00 0.00 3.32
6454 7051 1.376166 CCATACGCCGACCCAAACA 60.376 57.895 0.00 0.00 0.00 2.83
6455 7052 2.110352 CCCATACGCCGACCCAAAC 61.110 63.158 0.00 0.00 0.00 2.93
6456 7053 2.269562 CCCATACGCCGACCCAAA 59.730 61.111 0.00 0.00 0.00 3.28
6457 7054 4.476752 GCCCATACGCCGACCCAA 62.477 66.667 0.00 0.00 0.00 4.12
6459 7056 4.476752 TTGCCCATACGCCGACCC 62.477 66.667 0.00 0.00 0.00 4.46
6460 7057 2.895372 CTTGCCCATACGCCGACC 60.895 66.667 0.00 0.00 0.00 4.79
6461 7058 3.573491 GCTTGCCCATACGCCGAC 61.573 66.667 0.00 0.00 0.00 4.79
6462 7059 4.849310 GGCTTGCCCATACGCCGA 62.849 66.667 0.00 0.00 32.22 5.54
6464 7061 4.813235 TGGGCTTGCCCATACGCC 62.813 66.667 27.73 0.00 41.75 5.68
6465 7062 2.753849 TTGGGCTTGCCCATACGC 60.754 61.111 31.07 5.36 39.84 4.42
6466 7063 1.677300 TGTTGGGCTTGCCCATACG 60.677 57.895 31.07 0.00 39.84 3.06
6467 7064 0.611896 AGTGTTGGGCTTGCCCATAC 60.612 55.000 31.07 28.68 39.84 2.39
6468 7065 0.114168 AAGTGTTGGGCTTGCCCATA 59.886 50.000 31.07 20.93 39.84 2.74
6469 7066 1.152269 AAGTGTTGGGCTTGCCCAT 60.152 52.632 31.07 15.65 39.84 4.00
6470 7067 2.132996 CAAGTGTTGGGCTTGCCCA 61.133 57.895 27.73 27.73 37.18 5.36
6471 7068 2.736531 CAAGTGTTGGGCTTGCCC 59.263 61.111 22.91 22.91 37.18 5.36
6474 7071 2.736531 GGGCAAGTGTTGGGCTTG 59.263 61.111 0.00 0.00 44.34 4.01
6475 7072 2.912025 CGGGCAAGTGTTGGGCTT 60.912 61.111 0.00 0.00 0.00 4.35
6476 7073 3.884774 TCGGGCAAGTGTTGGGCT 61.885 61.111 0.00 0.00 0.00 5.19
6477 7074 3.670377 GTCGGGCAAGTGTTGGGC 61.670 66.667 0.00 0.00 0.00 5.36
6478 7075 2.983592 GGTCGGGCAAGTGTTGGG 60.984 66.667 0.00 0.00 0.00 4.12
6479 7076 2.983592 GGGTCGGGCAAGTGTTGG 60.984 66.667 0.00 0.00 0.00 3.77
6480 7077 1.178534 AATGGGTCGGGCAAGTGTTG 61.179 55.000 0.00 0.00 0.00 3.33
6481 7078 0.469144 AAATGGGTCGGGCAAGTGTT 60.469 50.000 0.00 0.00 0.00 3.32
6482 7079 0.469144 AAAATGGGTCGGGCAAGTGT 60.469 50.000 0.00 0.00 0.00 3.55
6483 7080 0.038343 CAAAATGGGTCGGGCAAGTG 60.038 55.000 0.00 0.00 0.00 3.16
6484 7081 0.178975 TCAAAATGGGTCGGGCAAGT 60.179 50.000 0.00 0.00 0.00 3.16
6485 7082 0.243636 GTCAAAATGGGTCGGGCAAG 59.756 55.000 0.00 0.00 0.00 4.01
6486 7083 1.519751 CGTCAAAATGGGTCGGGCAA 61.520 55.000 0.00 0.00 0.00 4.52
6487 7084 1.969064 CGTCAAAATGGGTCGGGCA 60.969 57.895 0.00 0.00 0.00 5.36
6488 7085 2.696759 CCGTCAAAATGGGTCGGGC 61.697 63.158 0.00 0.00 37.92 6.13
6489 7086 2.696759 GCCGTCAAAATGGGTCGGG 61.697 63.158 0.00 0.00 41.24 5.14
6490 7087 2.874751 GCCGTCAAAATGGGTCGG 59.125 61.111 0.00 0.00 43.37 4.79
6491 7088 2.478746 CGCCGTCAAAATGGGTCG 59.521 61.111 0.00 0.00 31.56 4.79
6492 7089 2.178273 GCGCCGTCAAAATGGGTC 59.822 61.111 0.00 0.00 31.56 4.46
6493 7090 3.370231 GGCGCCGTCAAAATGGGT 61.370 61.111 12.58 0.00 31.56 4.51
6494 7091 4.474846 CGGCGCCGTCAAAATGGG 62.475 66.667 39.71 8.63 34.35 4.00
6495 7092 3.427425 TCGGCGCCGTCAAAATGG 61.427 61.111 44.16 17.22 40.74 3.16
6496 7093 2.202298 GTCGGCGCCGTCAAAATG 60.202 61.111 44.16 18.00 40.74 2.32
6497 7094 2.255172 TTGTCGGCGCCGTCAAAAT 61.255 52.632 43.83 0.00 42.30 1.82
6498 7095 2.895865 TTGTCGGCGCCGTCAAAA 60.896 55.556 43.83 30.69 42.30 2.44
6500 7097 2.470362 TTTTTGTCGGCGCCGTCAA 61.470 52.632 42.91 42.91 43.16 3.18
6501 7098 2.895865 TTTTTGTCGGCGCCGTCA 60.896 55.556 44.16 41.06 40.74 4.35
6520 7117 9.549078 TCATTTGAAATATGCATGCACAATATT 57.451 25.926 25.37 19.59 0.00 1.28
6521 7118 9.549078 TTCATTTGAAATATGCATGCACAATAT 57.451 25.926 25.37 14.49 0.00 1.28
6522 7119 8.943909 TTCATTTGAAATATGCATGCACAATA 57.056 26.923 25.37 12.57 0.00 1.90
6523 7120 7.851387 TTCATTTGAAATATGCATGCACAAT 57.149 28.000 25.37 16.88 0.00 2.71
6524 7121 7.668525 TTTCATTTGAAATATGCATGCACAA 57.331 28.000 25.37 18.97 38.94 3.33
6525 7122 7.172703 TGTTTTCATTTGAAATATGCATGCACA 59.827 29.630 25.37 13.37 42.83 4.57
6526 7123 7.519843 TGTTTTCATTTGAAATATGCATGCAC 58.480 30.769 25.37 10.66 42.83 4.57
6527 7124 7.668525 TGTTTTCATTTGAAATATGCATGCA 57.331 28.000 25.04 25.04 42.83 3.96
6528 7125 8.231837 AGTTGTTTTCATTTGAAATATGCATGC 58.768 29.630 11.82 11.82 42.83 4.06
6548 7145 9.198837 CCGGCTTTAATGTTTAATTAAGTTGTT 57.801 29.630 0.00 0.00 0.00 2.83
6549 7146 8.361889 ACCGGCTTTAATGTTTAATTAAGTTGT 58.638 29.630 0.00 0.00 0.00 3.32
6550 7147 8.751302 ACCGGCTTTAATGTTTAATTAAGTTG 57.249 30.769 0.00 0.00 0.00 3.16
6551 7148 8.578151 TGACCGGCTTTAATGTTTAATTAAGTT 58.422 29.630 0.00 0.00 0.00 2.66
6552 7149 8.113173 TGACCGGCTTTAATGTTTAATTAAGT 57.887 30.769 0.00 0.00 0.00 2.24
6553 7150 7.700656 CCTGACCGGCTTTAATGTTTAATTAAG 59.299 37.037 0.00 0.00 0.00 1.85
6554 7151 7.393796 TCCTGACCGGCTTTAATGTTTAATTAA 59.606 33.333 0.00 0.00 0.00 1.40
6555 7152 6.885376 TCCTGACCGGCTTTAATGTTTAATTA 59.115 34.615 0.00 0.00 0.00 1.40
6556 7153 5.712917 TCCTGACCGGCTTTAATGTTTAATT 59.287 36.000 0.00 0.00 0.00 1.40
6557 7154 5.258051 TCCTGACCGGCTTTAATGTTTAAT 58.742 37.500 0.00 0.00 0.00 1.40
6558 7155 4.653868 TCCTGACCGGCTTTAATGTTTAA 58.346 39.130 0.00 0.00 0.00 1.52
6559 7156 4.289238 TCCTGACCGGCTTTAATGTTTA 57.711 40.909 0.00 0.00 0.00 2.01
6560 7157 3.149005 TCCTGACCGGCTTTAATGTTT 57.851 42.857 0.00 0.00 0.00 2.83
6561 7158 2.871096 TCCTGACCGGCTTTAATGTT 57.129 45.000 0.00 0.00 0.00 2.71
6562 7159 2.618045 CCTTCCTGACCGGCTTTAATGT 60.618 50.000 0.00 0.00 0.00 2.71
6563 7160 2.017049 CCTTCCTGACCGGCTTTAATG 58.983 52.381 0.00 0.00 0.00 1.90
6564 7161 1.682087 GCCTTCCTGACCGGCTTTAAT 60.682 52.381 0.00 0.00 40.62 1.40
6565 7162 0.322187 GCCTTCCTGACCGGCTTTAA 60.322 55.000 0.00 0.00 40.62 1.52
6566 7163 1.298667 GCCTTCCTGACCGGCTTTA 59.701 57.895 0.00 0.00 40.62 1.85
6567 7164 2.034221 GCCTTCCTGACCGGCTTT 59.966 61.111 0.00 0.00 40.62 3.51
6568 7165 4.035102 GGCCTTCCTGACCGGCTT 62.035 66.667 0.00 0.00 43.29 4.35
6574 7171 4.821589 CTCGCCGGCCTTCCTGAC 62.822 72.222 23.46 0.00 0.00 3.51
6576 7173 4.521062 CTCTCGCCGGCCTTCCTG 62.521 72.222 23.46 5.48 0.00 3.86
6578 7175 4.516195 GACTCTCGCCGGCCTTCC 62.516 72.222 23.46 1.23 0.00 3.46
6579 7176 4.516195 GGACTCTCGCCGGCCTTC 62.516 72.222 23.46 9.81 0.00 3.46
6588 7185 3.733960 TGGACGCGTGGACTCTCG 61.734 66.667 20.70 0.00 0.00 4.04
6589 7186 2.126424 GTGGACGCGTGGACTCTC 60.126 66.667 20.70 0.00 0.00 3.20
6590 7187 1.816863 AATGTGGACGCGTGGACTCT 61.817 55.000 20.70 1.77 0.00 3.24
6591 7188 0.108992 TAATGTGGACGCGTGGACTC 60.109 55.000 20.70 8.41 0.00 3.36
6592 7189 0.108804 CTAATGTGGACGCGTGGACT 60.109 55.000 20.70 0.02 0.00 3.85
6593 7190 1.693083 GCTAATGTGGACGCGTGGAC 61.693 60.000 20.70 13.83 0.00 4.02
6594 7191 1.447140 GCTAATGTGGACGCGTGGA 60.447 57.895 20.70 0.00 0.00 4.02
6595 7192 1.089481 ATGCTAATGTGGACGCGTGG 61.089 55.000 20.70 0.00 0.00 4.94
6596 7193 0.726827 AATGCTAATGTGGACGCGTG 59.273 50.000 20.70 0.00 0.00 5.34
6597 7194 2.303163 TAATGCTAATGTGGACGCGT 57.697 45.000 13.85 13.85 0.00 6.01
6598 7195 3.666883 TTTAATGCTAATGTGGACGCG 57.333 42.857 3.53 3.53 0.00 6.01
6599 7196 5.229921 TCTTTTAATGCTAATGTGGACGC 57.770 39.130 0.00 0.00 0.00 5.19
6600 7197 8.687824 AATTTCTTTTAATGCTAATGTGGACG 57.312 30.769 0.00 0.00 0.00 4.79
6618 7215 9.768662 TCGTAGTTAGGTTGTTTCTAATTTCTT 57.231 29.630 0.00 0.00 0.00 2.52
6619 7216 9.420551 CTCGTAGTTAGGTTGTTTCTAATTTCT 57.579 33.333 0.00 0.00 0.00 2.52
6620 7217 8.654215 CCTCGTAGTTAGGTTGTTTCTAATTTC 58.346 37.037 0.00 0.00 0.00 2.17
6621 7218 7.118825 GCCTCGTAGTTAGGTTGTTTCTAATTT 59.881 37.037 0.00 0.00 36.43 1.82
6622 7219 6.592994 GCCTCGTAGTTAGGTTGTTTCTAATT 59.407 38.462 0.00 0.00 36.43 1.40
6623 7220 6.104665 GCCTCGTAGTTAGGTTGTTTCTAAT 58.895 40.000 0.00 0.00 36.43 1.73
6624 7221 5.010922 TGCCTCGTAGTTAGGTTGTTTCTAA 59.989 40.000 0.00 0.00 36.43 2.10
6625 7222 4.523943 TGCCTCGTAGTTAGGTTGTTTCTA 59.476 41.667 0.00 0.00 36.43 2.10
6626 7223 3.322828 TGCCTCGTAGTTAGGTTGTTTCT 59.677 43.478 0.00 0.00 36.43 2.52
6627 7224 3.656559 TGCCTCGTAGTTAGGTTGTTTC 58.343 45.455 0.00 0.00 36.43 2.78
6628 7225 3.660865 CTGCCTCGTAGTTAGGTTGTTT 58.339 45.455 0.00 0.00 36.43 2.83
6629 7226 2.612221 GCTGCCTCGTAGTTAGGTTGTT 60.612 50.000 0.00 0.00 36.43 2.83
6630 7227 1.067071 GCTGCCTCGTAGTTAGGTTGT 60.067 52.381 0.00 0.00 36.43 3.32
6631 7228 1.641577 GCTGCCTCGTAGTTAGGTTG 58.358 55.000 0.00 0.00 36.43 3.77
6632 7229 0.172803 CGCTGCCTCGTAGTTAGGTT 59.827 55.000 0.00 0.00 36.43 3.50
6633 7230 1.807886 CGCTGCCTCGTAGTTAGGT 59.192 57.895 0.00 0.00 36.43 3.08
6634 7231 1.589196 GCGCTGCCTCGTAGTTAGG 60.589 63.158 0.00 0.00 37.17 2.69
6635 7232 1.939785 CGCGCTGCCTCGTAGTTAG 60.940 63.158 5.56 0.00 0.00 2.34
6636 7233 2.101575 CGCGCTGCCTCGTAGTTA 59.898 61.111 5.56 0.00 0.00 2.24
6666 7263 1.447643 CCGAGGATGTTGCCTAGGG 59.552 63.158 11.72 0.00 44.43 3.53
6667 7264 1.447643 CCCGAGGATGTTGCCTAGG 59.552 63.158 3.67 3.67 46.82 3.02
6668 7265 1.338136 ACCCCGAGGATGTTGCCTAG 61.338 60.000 0.00 0.00 38.73 3.02
6669 7266 1.306654 ACCCCGAGGATGTTGCCTA 60.307 57.895 0.00 0.00 38.73 3.93
6670 7267 2.610859 ACCCCGAGGATGTTGCCT 60.611 61.111 0.00 0.00 42.17 4.75
6671 7268 2.438434 CACCCCGAGGATGTTGCC 60.438 66.667 0.00 0.00 36.73 4.52
6672 7269 2.438434 CCACCCCGAGGATGTTGC 60.438 66.667 0.00 0.00 36.73 4.17
6673 7270 2.272146 CCCACCCCGAGGATGTTG 59.728 66.667 0.00 0.00 36.73 3.33
6674 7271 2.204090 ACCCACCCCGAGGATGTT 60.204 61.111 0.00 0.00 36.73 2.71
6675 7272 3.009115 CACCCACCCCGAGGATGT 61.009 66.667 0.00 0.00 36.73 3.06
6676 7273 2.687200 TCACCCACCCCGAGGATG 60.687 66.667 0.00 0.00 36.73 3.51
6677 7274 2.365635 CTCACCCACCCCGAGGAT 60.366 66.667 0.00 0.00 36.73 3.24
6680 7277 3.391382 GACCTCACCCACCCCGAG 61.391 72.222 0.00 0.00 0.00 4.63
6683 7280 2.687566 ATCGACCTCACCCACCCC 60.688 66.667 0.00 0.00 0.00 4.95
6684 7281 1.961180 CTCATCGACCTCACCCACCC 61.961 65.000 0.00 0.00 0.00 4.61
6685 7282 1.517832 CTCATCGACCTCACCCACC 59.482 63.158 0.00 0.00 0.00 4.61
6686 7283 1.153549 GCTCATCGACCTCACCCAC 60.154 63.158 0.00 0.00 0.00 4.61
6687 7284 2.710902 CGCTCATCGACCTCACCCA 61.711 63.158 0.00 0.00 41.67 4.51
6688 7285 2.105128 CGCTCATCGACCTCACCC 59.895 66.667 0.00 0.00 41.67 4.61
6689 7286 1.226717 GACGCTCATCGACCTCACC 60.227 63.158 0.00 0.00 41.67 4.02
6690 7287 1.583967 CGACGCTCATCGACCTCAC 60.584 63.158 0.00 0.00 45.13 3.51
6691 7288 2.761195 CCGACGCTCATCGACCTCA 61.761 63.158 3.74 0.00 45.13 3.86
6692 7289 2.024871 CCGACGCTCATCGACCTC 59.975 66.667 3.74 0.00 45.13 3.85
6693 7290 4.194720 GCCGACGCTCATCGACCT 62.195 66.667 3.74 0.00 45.13 3.85
6722 7319 4.636435 AACACGGCGTTCCCCTGG 62.636 66.667 11.19 0.00 29.27 4.45
6737 7334 4.778143 ATCGCCACCGCCTGGAAC 62.778 66.667 0.00 0.00 43.95 3.62
6738 7335 4.776322 CATCGCCACCGCCTGGAA 62.776 66.667 0.00 0.00 43.95 3.53
6740 7337 4.155733 TACATCGCCACCGCCTGG 62.156 66.667 0.00 0.00 44.08 4.45
6741 7338 2.586079 CTACATCGCCACCGCCTG 60.586 66.667 0.00 0.00 0.00 4.85
6742 7339 3.849951 CCTACATCGCCACCGCCT 61.850 66.667 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.