Multiple sequence alignment - TraesCS3A01G330100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G330100 chr3A 100.000 2446 0 0 1 2446 574918933 574916488 0.000000e+00 4518.0
1 TraesCS3A01G330100 chr3A 96.382 304 9 2 2144 2446 108288 108590 1.310000e-137 499.0
2 TraesCS3A01G330100 chr3A 97.569 288 6 1 2160 2446 713783456 713783169 2.190000e-135 492.0
3 TraesCS3A01G330100 chr3A 96.309 298 10 1 2150 2446 599384449 599384152 2.830000e-134 488.0
4 TraesCS3A01G330100 chr3A 92.557 309 19 4 1761 2065 675874750 675875058 8.030000e-120 440.0
5 TraesCS3A01G330100 chr3D 91.851 1178 65 16 363 1521 436182011 436180846 0.000000e+00 1615.0
6 TraesCS3A01G330100 chr3D 89.694 359 14 4 1 336 436182367 436182009 1.040000e-118 436.0
7 TraesCS3A01G330100 chr3D 84.387 269 32 1 758 1016 436177309 436177041 3.120000e-64 255.0
8 TraesCS3A01G330100 chr6D 86.912 787 58 11 1 760 40772491 40771723 0.000000e+00 841.0
9 TraesCS3A01G330100 chr2D 86.499 637 52 9 145 760 8319256 8319879 0.000000e+00 669.0
10 TraesCS3A01G330100 chr3B 89.865 444 37 6 321 757 247564445 247564887 4.570000e-157 564.0
11 TraesCS3A01G330100 chr3B 96.970 297 8 1 2151 2446 751196730 751197026 4.700000e-137 497.0
12 TraesCS3A01G330100 chr3B 76.654 544 81 23 1012 1521 571917071 571916540 2.410000e-65 259.0
13 TraesCS3A01G330100 chr3B 82.787 244 31 5 779 1012 571917371 571917129 8.860000e-50 207.0
14 TraesCS3A01G330100 chr7D 82.184 696 72 22 104 757 5583487 5584172 3.550000e-153 551.0
15 TraesCS3A01G330100 chr7D 85.106 94 10 1 329 418 568250083 568250176 2.590000e-15 93.5
16 TraesCS3A01G330100 chr7A 97.586 290 6 1 2158 2446 51815870 51815581 1.690000e-136 496.0
17 TraesCS3A01G330100 chr7A 97.569 288 6 1 2160 2446 705669086 705668799 2.190000e-135 492.0
18 TraesCS3A01G330100 chr7A 95.161 62 3 0 1702 1763 595075429 595075490 5.570000e-17 99.0
19 TraesCS3A01G330100 chr7A 96.429 56 2 0 1708 1763 694135918 694135863 2.590000e-15 93.5
20 TraesCS3A01G330100 chr7A 94.643 56 3 0 1708 1763 217774269 217774214 1.200000e-13 87.9
21 TraesCS3A01G330100 chr1B 96.656 299 9 1 2149 2446 635919249 635918951 1.690000e-136 496.0
22 TraesCS3A01G330100 chr5A 97.569 288 6 1 2160 2446 616085830 616086117 2.190000e-135 492.0
23 TraesCS3A01G330100 chr5A 93.311 299 18 2 1761 2058 630124073 630123776 8.030000e-120 440.0
24 TraesCS3A01G330100 chr5A 91.909 309 18 7 1750 2057 582978774 582979076 2.250000e-115 425.0
25 TraesCS3A01G330100 chr5A 84.516 155 22 2 608 760 558960921 558961075 4.210000e-33 152.0
26 TraesCS3A01G330100 chr5A 93.548 62 4 0 1702 1763 584680561 584680622 2.590000e-15 93.5
27 TraesCS3A01G330100 chr2A 97.222 288 7 1 2160 2446 64352900 64353187 1.020000e-133 486.0
28 TraesCS3A01G330100 chr2A 93.311 299 17 3 1761 2057 241962408 241962705 2.890000e-119 438.0
29 TraesCS3A01G330100 chr2A 93.548 62 4 0 1702 1763 249748286 249748347 2.590000e-15 93.5
30 TraesCS3A01G330100 chr2A 94.915 59 2 1 1706 1763 176862197 176862255 9.310000e-15 91.6
31 TraesCS3A01G330100 chr6A 93.559 295 18 1 1761 2054 594526395 594526689 2.890000e-119 438.0
32 TraesCS3A01G330100 chr6A 93.220 295 19 1 1761 2054 573193083 573192789 1.340000e-117 433.0
33 TraesCS3A01G330100 chr6A 91.830 306 21 4 1750 2054 322165751 322166053 8.090000e-115 424.0
34 TraesCS3A01G330100 chr6A 96.429 56 2 0 1708 1763 611835762 611835707 2.590000e-15 93.5
35 TraesCS3A01G330100 chr5D 93.559 295 18 1 1761 2054 352931671 352931965 2.890000e-119 438.0
36 TraesCS3A01G330100 chr4B 92.881 295 20 1 1761 2054 65621020 65620726 6.250000e-116 427.0
37 TraesCS3A01G330100 chr6B 86.826 334 34 9 165 491 4252360 4252690 4.970000e-97 364.0
38 TraesCS3A01G330100 chr6B 91.329 173 9 2 1 167 4225710 4225882 5.260000e-57 231.0
39 TraesCS3A01G330100 chr6B 82.222 270 19 12 489 758 4257579 4257819 3.190000e-49 206.0
40 TraesCS3A01G330100 chr7B 84.106 151 20 3 612 758 593082642 593082792 2.540000e-30 143.0
41 TraesCS3A01G330100 chr1D 83.784 148 22 2 611 757 254577781 254577635 3.280000e-29 139.0
42 TraesCS3A01G330100 chr1A 92.424 66 5 0 1698 1763 255900566 255900501 7.200000e-16 95.3
43 TraesCS3A01G330100 chr4A 93.548 62 4 0 1702 1763 82842185 82842246 2.590000e-15 93.5
44 TraesCS3A01G330100 chr2B 88.889 63 6 1 697 758 571243899 571243837 2.610000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G330100 chr3A 574916488 574918933 2445 True 4518.000000 4518 100.0000 1 2446 1 chr3A.!!$R1 2445
1 TraesCS3A01G330100 chr3D 436177041 436182367 5326 True 768.666667 1615 88.6440 1 1521 3 chr3D.!!$R1 1520
2 TraesCS3A01G330100 chr6D 40771723 40772491 768 True 841.000000 841 86.9120 1 760 1 chr6D.!!$R1 759
3 TraesCS3A01G330100 chr2D 8319256 8319879 623 False 669.000000 669 86.4990 145 760 1 chr2D.!!$F1 615
4 TraesCS3A01G330100 chr3B 571916540 571917371 831 True 233.000000 259 79.7205 779 1521 2 chr3B.!!$R1 742
5 TraesCS3A01G330100 chr7D 5583487 5584172 685 False 551.000000 551 82.1840 104 757 1 chr7D.!!$F1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 628 0.038744 AGGATGGCCAACTTGACCTG 59.961 55.0 10.96 0.0 36.29 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2287 5607 0.036732 TGACCCACCAGTCAGAATGC 59.963 55.0 0.0 0.0 41.78 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 106 3.009143 CCTAACCCATCCAAGCCCTATAC 59.991 52.174 0.00 0.00 0.00 1.47
250 272 2.281484 ATGGTTCCAGCAACGCGT 60.281 55.556 5.58 5.58 35.59 6.01
268 308 3.599514 CGCGTGCATTCTTTTCACTTAAG 59.400 43.478 0.00 0.00 0.00 1.85
283 323 7.473027 TTCACTTAAGTCTTTCTAAACACCG 57.527 36.000 4.77 0.00 0.00 4.94
381 423 5.652452 TCAGATAACGAGAGAAGTGAATGGA 59.348 40.000 0.00 0.00 0.00 3.41
462 505 8.506437 GTCAATACAAGTCATCTCAAACATCAA 58.494 33.333 0.00 0.00 0.00 2.57
463 506 8.506437 TCAATACAAGTCATCTCAAACATCAAC 58.494 33.333 0.00 0.00 0.00 3.18
508 584 3.610911 CTGGACCTAACAAATGGACTCC 58.389 50.000 0.00 0.00 0.00 3.85
552 628 0.038744 AGGATGGCCAACTTGACCTG 59.961 55.000 10.96 0.00 36.29 4.00
624 700 4.739716 GCCTACATGAATATTTGGTTTGCG 59.260 41.667 0.00 0.00 0.00 4.85
634 710 6.691754 ATATTTGGTTTGCGTACATGATGA 57.308 33.333 0.00 0.00 0.00 2.92
680 757 5.246981 AGGAATTCAGTTCTTCCATGTCA 57.753 39.130 7.93 0.00 42.83 3.58
731 808 0.972134 TGAAAAATGGATGGGCGCAA 59.028 45.000 10.83 0.00 0.00 4.85
735 812 0.903942 AAATGGATGGGCGCAACAAT 59.096 45.000 10.83 0.29 0.00 2.71
777 854 9.926158 TCTAGTATACACGTATTAGAAGAGGAG 57.074 37.037 5.50 0.00 0.00 3.69
781 858 9.001542 GTATACACGTATTAGAAGAGGAGATGT 57.998 37.037 0.00 0.00 0.00 3.06
936 1023 4.431131 ATCCCTTGCGTGGCCCAG 62.431 66.667 0.00 0.00 0.00 4.45
1083 1229 0.546598 CCACCGAGGGCCTTCTAAAT 59.453 55.000 7.89 0.00 0.00 1.40
1094 1240 0.804544 CTTCTAAATGCCGGCGTCGA 60.805 55.000 24.10 15.83 39.00 4.20
1192 1338 2.055042 CAGGCGAGGCACTAGGAGT 61.055 63.158 0.00 0.00 41.55 3.85
1258 1425 0.306533 GCATTGACGTTGTTGTCGGT 59.693 50.000 0.00 0.00 41.87 4.69
1286 1453 1.480869 GGTAGCCGAGGATTAGAGGGT 60.481 57.143 0.00 0.00 38.18 4.34
1294 1472 4.202131 CCGAGGATTAGAGGGTTCTGTAAC 60.202 50.000 0.00 0.00 32.59 2.50
1338 1516 7.977293 TCGACGATGAAAGGAATTTGAACTATA 59.023 33.333 0.00 0.00 0.00 1.31
1354 1532 4.540359 ACTATAACAACGTTGGTAGCCA 57.460 40.909 28.23 16.08 33.19 4.75
1396 1574 4.352600 CAGATGAGTTCACTGCATTTCC 57.647 45.455 0.00 0.00 0.00 3.13
1452 1630 4.469586 TCCACAACCAACTCTAGCATGATA 59.530 41.667 0.00 0.00 0.00 2.15
1453 1631 5.130975 TCCACAACCAACTCTAGCATGATAT 59.869 40.000 0.00 0.00 0.00 1.63
1454 1632 5.237996 CCACAACCAACTCTAGCATGATATG 59.762 44.000 0.00 0.00 0.00 1.78
1455 1633 6.051074 CACAACCAACTCTAGCATGATATGA 58.949 40.000 0.00 0.00 0.00 2.15
1456 1634 6.709397 CACAACCAACTCTAGCATGATATGAT 59.291 38.462 0.00 0.00 0.00 2.45
1485 1663 1.473257 GCATCGGTGGCAACTCTATGA 60.473 52.381 11.96 0.00 37.61 2.15
1521 1699 9.136323 GTCCCCATTTGTATTCATTTCTATTCT 57.864 33.333 0.00 0.00 0.00 2.40
1553 2378 6.925165 TGTAGGGAATATTCGAATAACCGTTC 59.075 38.462 27.87 24.72 0.00 3.95
1574 2399 5.996669 TCGCATTACTCAATCGTACTAGA 57.003 39.130 0.00 0.00 0.00 2.43
1589 2414 5.880887 TCGTACTAGAGATGCTTCTTCTCAA 59.119 40.000 3.29 0.00 41.72 3.02
1591 2416 7.067615 TCGTACTAGAGATGCTTCTTCTCAAAT 59.932 37.037 3.29 1.14 41.72 2.32
1592 2417 8.346300 CGTACTAGAGATGCTTCTTCTCAAATA 58.654 37.037 3.29 0.44 41.72 1.40
1601 2426 7.928307 TGCTTCTTCTCAAATAGTTTGCTAT 57.072 32.000 0.00 0.00 40.43 2.97
1604 2429 7.066284 GCTTCTTCTCAAATAGTTTGCTATCCA 59.934 37.037 0.00 0.00 40.43 3.41
1623 2448 3.443329 TCCATGCGCAATGTAAGTTTCAT 59.557 39.130 17.11 0.00 34.11 2.57
1628 2453 8.450180 CCATGCGCAATGTAAGTTTCATATATA 58.550 33.333 17.11 0.00 34.11 0.86
1629 2454 9.824534 CATGCGCAATGTAAGTTTCATATATAA 57.175 29.630 17.11 0.00 0.00 0.98
1631 2456 9.658475 TGCGCAATGTAAGTTTCATATATAAAC 57.342 29.630 8.16 5.20 37.14 2.01
1632 2457 9.658475 GCGCAATGTAAGTTTCATATATAAACA 57.342 29.630 0.30 0.00 38.92 2.83
1642 2467 9.185680 AGTTTCATATATAAACAACCACTTCCC 57.814 33.333 12.78 0.00 38.92 3.97
1643 2468 8.410912 GTTTCATATATAAACAACCACTTCCCC 58.589 37.037 7.60 0.00 36.92 4.81
1644 2469 7.460214 TCATATATAAACAACCACTTCCCCT 57.540 36.000 0.00 0.00 0.00 4.79
1645 2470 8.570038 TCATATATAAACAACCACTTCCCCTA 57.430 34.615 0.00 0.00 0.00 3.53
1646 2471 9.005318 TCATATATAAACAACCACTTCCCCTAA 57.995 33.333 0.00 0.00 0.00 2.69
1647 2472 9.635404 CATATATAAACAACCACTTCCCCTAAA 57.365 33.333 0.00 0.00 0.00 1.85
1649 2474 8.959676 ATATAAACAACCACTTCCCCTAAAAA 57.040 30.769 0.00 0.00 0.00 1.94
1687 2512 8.514330 AAACAACCACTCTGACTAATTGTTAA 57.486 30.769 0.00 0.00 37.71 2.01
1702 2527 9.316730 ACTAATTGTTAAATGCAAATGCTATGG 57.683 29.630 6.97 0.00 42.66 2.74
1703 2528 6.607735 ATTGTTAAATGCAAATGCTATGGC 57.392 33.333 6.97 0.00 42.66 4.40
1704 2529 5.341872 TGTTAAATGCAAATGCTATGGCT 57.658 34.783 6.97 0.00 42.66 4.75
1705 2530 5.732633 TGTTAAATGCAAATGCTATGGCTT 58.267 33.333 6.97 0.00 42.66 4.35
1706 2531 6.171921 TGTTAAATGCAAATGCTATGGCTTT 58.828 32.000 6.97 0.00 42.66 3.51
1707 2532 6.313411 TGTTAAATGCAAATGCTATGGCTTTC 59.687 34.615 6.97 0.00 42.66 2.62
1708 2533 4.748277 AATGCAAATGCTATGGCTTTCT 57.252 36.364 6.97 0.00 42.66 2.52
1709 2534 4.748277 ATGCAAATGCTATGGCTTTCTT 57.252 36.364 6.97 0.00 42.66 2.52
1710 2535 4.540359 TGCAAATGCTATGGCTTTCTTT 57.460 36.364 6.97 0.00 42.66 2.52
1711 2536 4.247258 TGCAAATGCTATGGCTTTCTTTG 58.753 39.130 6.97 8.26 42.66 2.77
1712 2537 3.619929 GCAAATGCTATGGCTTTCTTTGG 59.380 43.478 1.68 0.00 39.59 3.28
1713 2538 4.824289 CAAATGCTATGGCTTTCTTTGGT 58.176 39.130 1.68 0.00 39.59 3.67
1714 2539 5.240121 CAAATGCTATGGCTTTCTTTGGTT 58.760 37.500 1.68 0.00 39.59 3.67
1715 2540 5.488262 AATGCTATGGCTTTCTTTGGTTT 57.512 34.783 1.68 0.00 39.59 3.27
1716 2541 4.255833 TGCTATGGCTTTCTTTGGTTTG 57.744 40.909 1.68 0.00 39.59 2.93
1717 2542 3.006752 TGCTATGGCTTTCTTTGGTTTGG 59.993 43.478 1.68 0.00 39.59 3.28
1718 2543 3.258123 GCTATGGCTTTCTTTGGTTTGGA 59.742 43.478 0.00 0.00 35.22 3.53
1719 2544 4.619160 GCTATGGCTTTCTTTGGTTTGGAG 60.619 45.833 0.00 0.00 35.22 3.86
1720 2545 2.038659 TGGCTTTCTTTGGTTTGGAGG 58.961 47.619 0.00 0.00 0.00 4.30
1721 2546 2.316108 GGCTTTCTTTGGTTTGGAGGA 58.684 47.619 0.00 0.00 0.00 3.71
1722 2547 2.698274 GGCTTTCTTTGGTTTGGAGGAA 59.302 45.455 0.00 0.00 0.00 3.36
1723 2548 3.324846 GGCTTTCTTTGGTTTGGAGGAAT 59.675 43.478 0.00 0.00 0.00 3.01
1724 2549 4.202357 GGCTTTCTTTGGTTTGGAGGAATT 60.202 41.667 0.00 0.00 0.00 2.17
1725 2550 5.368145 GCTTTCTTTGGTTTGGAGGAATTT 58.632 37.500 0.00 0.00 0.00 1.82
1726 2551 5.822519 GCTTTCTTTGGTTTGGAGGAATTTT 59.177 36.000 0.00 0.00 0.00 1.82
1727 2552 6.989759 GCTTTCTTTGGTTTGGAGGAATTTTA 59.010 34.615 0.00 0.00 0.00 1.52
1728 2553 7.661437 GCTTTCTTTGGTTTGGAGGAATTTTAT 59.339 33.333 0.00 0.00 0.00 1.40
1731 2556 8.361169 TCTTTGGTTTGGAGGAATTTTATAGG 57.639 34.615 0.00 0.00 0.00 2.57
1732 2557 8.174085 TCTTTGGTTTGGAGGAATTTTATAGGA 58.826 33.333 0.00 0.00 0.00 2.94
1733 2558 8.728596 TTTGGTTTGGAGGAATTTTATAGGAA 57.271 30.769 0.00 0.00 0.00 3.36
1734 2559 7.712204 TGGTTTGGAGGAATTTTATAGGAAC 57.288 36.000 0.00 0.00 0.00 3.62
1735 2560 7.475299 TGGTTTGGAGGAATTTTATAGGAACT 58.525 34.615 0.00 0.00 46.37 3.01
1736 2561 7.614192 TGGTTTGGAGGAATTTTATAGGAACTC 59.386 37.037 0.00 0.00 41.75 3.01
1737 2562 7.834681 GGTTTGGAGGAATTTTATAGGAACTCT 59.165 37.037 0.00 0.00 41.75 3.24
1738 2563 9.901172 GTTTGGAGGAATTTTATAGGAACTCTA 57.099 33.333 0.00 0.00 41.75 2.43
1740 2565 9.502035 TTGGAGGAATTTTATAGGAACTCTAGA 57.498 33.333 0.00 0.00 41.75 2.43
1741 2566 9.148879 TGGAGGAATTTTATAGGAACTCTAGAG 57.851 37.037 18.49 18.49 41.75 2.43
1742 2567 8.590204 GGAGGAATTTTATAGGAACTCTAGAGG 58.410 40.741 23.50 6.21 41.75 3.69
1743 2568 9.369672 GAGGAATTTTATAGGAACTCTAGAGGA 57.630 37.037 23.50 4.12 41.75 3.71
1744 2569 9.906274 AGGAATTTTATAGGAACTCTAGAGGAT 57.094 33.333 23.50 12.03 41.75 3.24
1782 2607 9.997172 AGGATTTGGAGAAATTTTATAGGAACT 57.003 29.630 0.00 0.00 35.43 3.01
1832 2657 6.644248 TTTTACTTTAGAGCCCTTTGGTTC 57.356 37.500 0.00 0.00 41.91 3.62
1833 2658 3.876309 ACTTTAGAGCCCTTTGGTTCA 57.124 42.857 0.00 0.00 43.89 3.18
1834 2659 4.388577 ACTTTAGAGCCCTTTGGTTCAT 57.611 40.909 0.00 0.00 43.89 2.57
1835 2660 5.514500 ACTTTAGAGCCCTTTGGTTCATA 57.486 39.130 0.00 0.00 43.89 2.15
1836 2661 5.501156 ACTTTAGAGCCCTTTGGTTCATAG 58.499 41.667 0.00 0.00 43.89 2.23
1837 2662 5.250774 ACTTTAGAGCCCTTTGGTTCATAGA 59.749 40.000 0.00 0.00 43.89 1.98
1838 2663 5.772393 TTAGAGCCCTTTGGTTCATAGAA 57.228 39.130 0.00 0.00 43.89 2.10
1839 2664 4.657814 AGAGCCCTTTGGTTCATAGAAA 57.342 40.909 0.00 0.00 43.89 2.52
1840 2665 5.198602 AGAGCCCTTTGGTTCATAGAAAT 57.801 39.130 0.00 0.00 43.89 2.17
1841 2666 4.952335 AGAGCCCTTTGGTTCATAGAAATG 59.048 41.667 0.00 0.00 43.89 2.32
1842 2667 4.026052 AGCCCTTTGGTTCATAGAAATGG 58.974 43.478 0.00 0.00 33.61 3.16
1843 2668 4.023291 GCCCTTTGGTTCATAGAAATGGA 58.977 43.478 0.00 0.00 33.61 3.41
1844 2669 4.466015 GCCCTTTGGTTCATAGAAATGGAA 59.534 41.667 0.00 0.00 33.61 3.53
1845 2670 5.129320 GCCCTTTGGTTCATAGAAATGGAAT 59.871 40.000 0.00 0.00 33.61 3.01
1846 2671 6.683861 GCCCTTTGGTTCATAGAAATGGAATC 60.684 42.308 0.00 0.00 33.61 2.52
1847 2672 6.183360 CCCTTTGGTTCATAGAAATGGAATCC 60.183 42.308 0.00 0.00 33.61 3.01
1848 2673 6.608808 CCTTTGGTTCATAGAAATGGAATCCT 59.391 38.462 0.00 0.00 33.61 3.24
1849 2674 7.779798 CCTTTGGTTCATAGAAATGGAATCCTA 59.220 37.037 0.00 0.00 33.61 2.94
1850 2675 9.359653 CTTTGGTTCATAGAAATGGAATCCTAT 57.640 33.333 0.00 0.00 33.61 2.57
1851 2676 9.713684 TTTGGTTCATAGAAATGGAATCCTATT 57.286 29.630 0.00 0.00 33.61 1.73
1852 2677 8.924511 TGGTTCATAGAAATGGAATCCTATTC 57.075 34.615 0.00 5.25 33.61 1.75
1853 2678 7.944554 TGGTTCATAGAAATGGAATCCTATTCC 59.055 37.037 11.06 11.06 39.03 3.01
1854 2679 8.166726 GGTTCATAGAAATGGAATCCTATTCCT 58.833 37.037 17.27 0.36 39.31 3.36
1857 2682 9.392506 TCATAGAAATGGAATCCTATTCCTACA 57.607 33.333 17.27 0.93 39.31 2.74
1861 2686 8.830741 AGAAATGGAATCCTATTCCTACATAGG 58.169 37.037 17.27 0.00 45.32 2.57
1884 2709 7.830099 GGATTGATTTCTATCCTCCACATTT 57.170 36.000 12.11 0.00 42.45 2.32
1885 2710 7.880105 GGATTGATTTCTATCCTCCACATTTC 58.120 38.462 12.11 0.00 42.45 2.17
1886 2711 7.503566 GGATTGATTTCTATCCTCCACATTTCA 59.496 37.037 12.11 0.00 42.45 2.69
1887 2712 9.075678 GATTGATTTCTATCCTCCACATTTCAT 57.924 33.333 0.00 0.00 0.00 2.57
1889 2714 9.565090 TTGATTTCTATCCTCCACATTTCATAG 57.435 33.333 0.00 0.00 0.00 2.23
1890 2715 8.159447 TGATTTCTATCCTCCACATTTCATAGG 58.841 37.037 0.00 0.00 0.00 2.57
1891 2716 7.690454 TTTCTATCCTCCACATTTCATAGGA 57.310 36.000 0.00 0.00 40.50 2.94
1892 2717 7.690454 TTCTATCCTCCACATTTCATAGGAA 57.310 36.000 0.00 0.00 39.68 3.36
1893 2718 7.690454 TCTATCCTCCACATTTCATAGGAAA 57.310 36.000 4.85 4.85 46.36 3.13
1894 2719 8.101309 TCTATCCTCCACATTTCATAGGAAAA 57.899 34.615 6.65 0.00 45.52 2.29
1895 2720 8.727149 TCTATCCTCCACATTTCATAGGAAAAT 58.273 33.333 6.65 0.00 45.52 1.82
1898 2723 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
1899 2724 9.540538 TCCTCCACATTTCATAGGAAAATAAAA 57.459 29.630 6.65 0.00 45.52 1.52
1914 2739 9.975218 AGGAAAATAAAAATAAGCCTAGACTCA 57.025 29.630 0.00 0.00 0.00 3.41
1919 2744 9.920946 AATAAAAATAAGCCTAGACTCAATGGA 57.079 29.630 0.00 0.00 0.00 3.41
1920 2745 9.920946 ATAAAAATAAGCCTAGACTCAATGGAA 57.079 29.630 0.00 0.00 0.00 3.53
1921 2746 8.650143 AAAAATAAGCCTAGACTCAATGGAAA 57.350 30.769 0.00 0.00 0.00 3.13
1922 2747 8.650143 AAAATAAGCCTAGACTCAATGGAAAA 57.350 30.769 0.00 0.00 0.00 2.29
1923 2748 8.650143 AAATAAGCCTAGACTCAATGGAAAAA 57.350 30.769 0.00 0.00 0.00 1.94
1924 2749 8.829373 AATAAGCCTAGACTCAATGGAAAAAT 57.171 30.769 0.00 0.00 0.00 1.82
1925 2750 6.765915 AAGCCTAGACTCAATGGAAAAATC 57.234 37.500 0.00 0.00 0.00 2.17
1926 2751 5.196695 AGCCTAGACTCAATGGAAAAATCC 58.803 41.667 0.00 0.00 0.00 3.01
1927 2752 5.044550 AGCCTAGACTCAATGGAAAAATCCT 60.045 40.000 0.00 0.00 0.00 3.24
1928 2753 5.654209 GCCTAGACTCAATGGAAAAATCCTT 59.346 40.000 0.00 0.00 0.00 3.36
1929 2754 6.153510 GCCTAGACTCAATGGAAAAATCCTTT 59.846 38.462 0.00 0.00 0.00 3.11
1930 2755 7.542025 CCTAGACTCAATGGAAAAATCCTTTG 58.458 38.462 14.17 14.17 42.71 2.77
1931 2756 7.394359 CCTAGACTCAATGGAAAAATCCTTTGA 59.606 37.037 19.14 19.14 45.60 2.69
1932 2757 7.787623 AGACTCAATGGAAAAATCCTTTGAT 57.212 32.000 20.04 13.28 46.15 2.57
1933 2758 7.609056 AGACTCAATGGAAAAATCCTTTGATG 58.391 34.615 20.04 16.78 46.15 3.07
1934 2759 7.234166 AGACTCAATGGAAAAATCCTTTGATGT 59.766 33.333 20.04 18.77 46.15 3.06
1935 2760 7.381323 ACTCAATGGAAAAATCCTTTGATGTC 58.619 34.615 20.04 0.00 46.15 3.06
1936 2761 7.015487 ACTCAATGGAAAAATCCTTTGATGTCA 59.985 33.333 20.04 4.90 46.15 3.58
1937 2762 7.733969 TCAATGGAAAAATCCTTTGATGTCAA 58.266 30.769 17.37 0.00 44.07 3.18
1938 2763 8.377034 TCAATGGAAAAATCCTTTGATGTCAAT 58.623 29.630 17.37 0.00 44.07 2.57
1939 2764 8.662141 CAATGGAAAAATCCTTTGATGTCAATC 58.338 33.333 14.87 0.00 43.50 2.67
1940 2765 7.300556 TGGAAAAATCCTTTGATGTCAATCA 57.699 32.000 0.00 0.00 41.16 2.57
1968 2793 9.995003 ATGACATCTCATTTCCTATTTCTACTC 57.005 33.333 0.00 0.00 32.79 2.59
1969 2794 8.981659 TGACATCTCATTTCCTATTTCTACTCA 58.018 33.333 0.00 0.00 0.00 3.41
1970 2795 9.995003 GACATCTCATTTCCTATTTCTACTCAT 57.005 33.333 0.00 0.00 0.00 2.90
1974 2799 9.883293 TCTCATTTCCTATTTCTACTCATAGGA 57.117 33.333 4.13 4.13 46.34 2.94
1981 2806 9.883293 TCCTATTTCTACTCATAGGATTTGAGA 57.117 33.333 7.63 0.00 44.16 3.27
1988 2813 9.593565 TCTACTCATAGGATTTGAGATACATGT 57.406 33.333 2.69 2.69 42.63 3.21
1989 2814 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
1990 2815 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
1991 2816 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
1992 2817 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
1993 2818 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
1994 2819 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
2003 2828 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
2004 2829 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
2005 2830 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
2006 2831 9.330063 GATACATGTCATCTCATTTCCTACAAA 57.670 33.333 0.00 0.00 0.00 2.83
2007 2832 9.685276 ATACATGTCATCTCATTTCCTACAAAA 57.315 29.630 0.00 0.00 0.00 2.44
2008 2833 8.585471 ACATGTCATCTCATTTCCTACAAAAT 57.415 30.769 0.00 0.00 0.00 1.82
2009 2834 9.028284 ACATGTCATCTCATTTCCTACAAAATT 57.972 29.630 0.00 0.00 0.00 1.82
2010 2835 9.865321 CATGTCATCTCATTTCCTACAAAATTT 57.135 29.630 0.00 0.00 0.00 1.82
2012 2837 9.300681 TGTCATCTCATTTCCTACAAAATTTCT 57.699 29.630 0.00 0.00 0.00 2.52
2041 2866 9.186837 TCTTACGATAATCCTATCCTATGAACC 57.813 37.037 0.00 0.00 31.68 3.62
2042 2867 8.888836 TTACGATAATCCTATCCTATGAACCA 57.111 34.615 0.00 0.00 31.68 3.67
2043 2868 7.792364 ACGATAATCCTATCCTATGAACCAA 57.208 36.000 0.00 0.00 31.68 3.67
2044 2869 8.202461 ACGATAATCCTATCCTATGAACCAAA 57.798 34.615 0.00 0.00 31.68 3.28
2045 2870 8.656806 ACGATAATCCTATCCTATGAACCAAAA 58.343 33.333 0.00 0.00 31.68 2.44
2046 2871 9.502091 CGATAATCCTATCCTATGAACCAAAAA 57.498 33.333 0.00 0.00 31.68 1.94
2097 2922 9.832445 ACTTGTGTCTACTTTTATTTCTTGAGA 57.168 29.630 0.00 0.00 0.00 3.27
2164 2989 9.500785 TTGATGTATCAGTTATTTGTTGAGTGA 57.499 29.630 0.00 0.00 38.19 3.41
2172 2997 9.778741 TCAGTTATTTGTTGAGTGAATTCTAGT 57.221 29.630 7.05 0.00 0.00 2.57
2191 5511 9.816787 ATTCTAGTTTTTACCCCTATTTTGACA 57.183 29.630 0.00 0.00 0.00 3.58
2199 5519 9.549078 TTTTACCCCTATTTTGACATTTTTGAC 57.451 29.630 0.00 0.00 0.00 3.18
2201 5521 6.521162 ACCCCTATTTTGACATTTTTGACAC 58.479 36.000 0.00 0.00 0.00 3.67
2202 5522 6.326323 ACCCCTATTTTGACATTTTTGACACT 59.674 34.615 0.00 0.00 0.00 3.55
2203 5523 7.507616 ACCCCTATTTTGACATTTTTGACACTA 59.492 33.333 0.00 0.00 0.00 2.74
2211 5531 9.921637 TTTGACATTTTTGACACTAATTATCCC 57.078 29.630 0.00 0.00 0.00 3.85
2212 5532 8.642935 TGACATTTTTGACACTAATTATCCCA 57.357 30.769 0.00 0.00 0.00 4.37
2213 5533 9.253832 TGACATTTTTGACACTAATTATCCCAT 57.746 29.630 0.00 0.00 0.00 4.00
2219 5539 8.815565 TTTGACACTAATTATCCCATTTAGCA 57.184 30.769 0.00 0.00 0.00 3.49
2220 5540 8.815565 TTGACACTAATTATCCCATTTAGCAA 57.184 30.769 0.00 0.00 0.00 3.91
2221 5541 8.450578 TGACACTAATTATCCCATTTAGCAAG 57.549 34.615 0.00 0.00 0.00 4.01
2222 5542 8.271458 TGACACTAATTATCCCATTTAGCAAGA 58.729 33.333 0.00 0.00 0.00 3.02
2223 5543 9.289782 GACACTAATTATCCCATTTAGCAAGAT 57.710 33.333 0.00 0.00 0.00 2.40
2230 5550 6.661304 ATCCCATTTAGCAAGATTTCATCC 57.339 37.500 0.00 0.00 0.00 3.51
2231 5551 5.517924 TCCCATTTAGCAAGATTTCATCCA 58.482 37.500 0.00 0.00 0.00 3.41
2232 5552 6.138263 TCCCATTTAGCAAGATTTCATCCAT 58.862 36.000 0.00 0.00 0.00 3.41
2234 5554 7.126115 TCCCATTTAGCAAGATTTCATCCATTT 59.874 33.333 0.00 0.00 0.00 2.32
2238 5558 9.822185 ATTTAGCAAGATTTCATCCATTTTACC 57.178 29.630 0.00 0.00 0.00 2.85
2239 5559 6.225981 AGCAAGATTTCATCCATTTTACCC 57.774 37.500 0.00 0.00 0.00 3.69
2241 5561 5.104982 GCAAGATTTCATCCATTTTACCCCA 60.105 40.000 0.00 0.00 0.00 4.96
2242 5562 6.408434 GCAAGATTTCATCCATTTTACCCCAT 60.408 38.462 0.00 0.00 0.00 4.00
2243 5563 7.567458 CAAGATTTCATCCATTTTACCCCATT 58.433 34.615 0.00 0.00 0.00 3.16
2244 5564 7.754091 AGATTTCATCCATTTTACCCCATTT 57.246 32.000 0.00 0.00 0.00 2.32
2246 5566 8.927411 AGATTTCATCCATTTTACCCCATTTAG 58.073 33.333 0.00 0.00 0.00 1.85
2248 5568 5.523588 TCATCCATTTTACCCCATTTAGCA 58.476 37.500 0.00 0.00 0.00 3.49
2256 5576 8.791675 CATTTTACCCCATTTAGCAAAAATGTT 58.208 29.630 17.98 8.65 37.74 2.71
2257 5577 7.736447 TTTACCCCATTTAGCAAAAATGTTG 57.264 32.000 17.98 12.75 36.24 3.33
2258 5578 4.650734 ACCCCATTTAGCAAAAATGTTGG 58.349 39.130 17.98 18.33 36.24 3.77
2259 5579 3.439825 CCCCATTTAGCAAAAATGTTGGC 59.560 43.478 17.98 0.00 36.24 4.52
2260 5580 4.070716 CCCATTTAGCAAAAATGTTGGCA 58.929 39.130 17.98 0.00 35.96 4.92
2262 5582 4.514441 CCATTTAGCAAAAATGTTGGCACA 59.486 37.500 17.98 0.00 35.96 4.57
2263 5583 5.334260 CCATTTAGCAAAAATGTTGGCACAG 60.334 40.000 17.98 2.95 35.96 3.66
2265 5585 3.264998 AGCAAAAATGTTGGCACAGTT 57.735 38.095 0.00 0.00 43.01 3.16
2273 5593 1.133325 TGTTGGCACAGTTTACCCCAT 60.133 47.619 0.00 0.00 42.39 4.00
2274 5594 1.967779 GTTGGCACAGTTTACCCCATT 59.032 47.619 0.00 0.00 42.39 3.16
2275 5595 2.367241 GTTGGCACAGTTTACCCCATTT 59.633 45.455 0.00 0.00 42.39 2.32
2276 5596 3.527507 TGGCACAGTTTACCCCATTTA 57.472 42.857 0.00 0.00 0.00 1.40
2279 5599 4.841246 TGGCACAGTTTACCCCATTTAATT 59.159 37.500 0.00 0.00 0.00 1.40
2282 5602 6.712998 GGCACAGTTTACCCCATTTAATTTTT 59.287 34.615 0.00 0.00 0.00 1.94
2302 5622 2.189594 TTGAGCATTCTGACTGGTGG 57.810 50.000 4.37 0.00 0.00 4.61
2303 5623 0.325933 TGAGCATTCTGACTGGTGGG 59.674 55.000 4.37 0.00 0.00 4.61
2304 5624 0.326264 GAGCATTCTGACTGGTGGGT 59.674 55.000 4.37 0.00 0.00 4.51
2305 5625 0.326264 AGCATTCTGACTGGTGGGTC 59.674 55.000 0.00 0.00 36.81 4.46
2306 5626 0.036732 GCATTCTGACTGGTGGGTCA 59.963 55.000 0.00 0.00 42.96 4.02
2307 5627 1.813513 CATTCTGACTGGTGGGTCAC 58.186 55.000 0.00 0.00 40.72 3.67
2308 5628 1.072173 CATTCTGACTGGTGGGTCACA 59.928 52.381 0.38 0.00 40.72 3.58
2310 5630 1.434188 TCTGACTGGTGGGTCACAAT 58.566 50.000 0.38 0.00 40.72 2.71
2311 5631 1.774254 TCTGACTGGTGGGTCACAATT 59.226 47.619 0.38 0.00 40.72 2.32
2312 5632 1.881973 CTGACTGGTGGGTCACAATTG 59.118 52.381 3.24 3.24 40.72 2.32
2313 5633 1.214175 TGACTGGTGGGTCACAATTGT 59.786 47.619 4.92 4.92 40.72 2.71
2314 5634 1.880027 GACTGGTGGGTCACAATTGTC 59.120 52.381 8.48 0.00 35.86 3.18
2315 5635 0.874390 CTGGTGGGTCACAATTGTCG 59.126 55.000 8.48 4.95 35.86 4.35
2316 5636 0.536233 TGGTGGGTCACAATTGTCGG 60.536 55.000 8.48 0.00 35.86 4.79
2317 5637 1.241315 GGTGGGTCACAATTGTCGGG 61.241 60.000 8.48 0.00 35.86 5.14
2318 5638 0.536460 GTGGGTCACAATTGTCGGGT 60.536 55.000 8.48 0.00 34.08 5.28
2320 5640 0.958876 GGGTCACAATTGTCGGGTCC 60.959 60.000 8.48 5.20 0.00 4.46
2323 5643 0.605319 TCACAATTGTCGGGTCCAGC 60.605 55.000 8.48 0.00 0.00 4.85
2324 5644 0.606401 CACAATTGTCGGGTCCAGCT 60.606 55.000 8.48 0.00 0.00 4.24
2327 5647 0.321653 AATTGTCGGGTCCAGCTGAC 60.322 55.000 17.39 11.38 43.67 3.51
2332 5652 2.439156 GGGTCCAGCTGACATGCC 60.439 66.667 17.39 9.18 46.38 4.40
2333 5653 2.352422 GGTCCAGCTGACATGCCA 59.648 61.111 17.39 0.00 46.38 4.92
2335 5655 2.046988 TCCAGCTGACATGCCACG 60.047 61.111 17.39 0.00 0.00 4.94
2336 5656 2.359107 CCAGCTGACATGCCACGT 60.359 61.111 17.39 0.00 0.00 4.49
2337 5657 2.393768 CCAGCTGACATGCCACGTC 61.394 63.158 17.39 0.00 0.00 4.34
2338 5658 1.668793 CAGCTGACATGCCACGTCA 60.669 57.895 8.42 0.00 41.00 4.35
2351 5671 2.755836 CACGTCAGTGGTTTTTCCTG 57.244 50.000 0.00 0.00 44.34 3.86
2353 5673 0.310854 CGTCAGTGGTTTTTCCTGGC 59.689 55.000 0.00 0.00 37.07 4.85
2354 5674 1.692411 GTCAGTGGTTTTTCCTGGCT 58.308 50.000 0.00 0.00 37.07 4.75
2355 5675 2.808933 CGTCAGTGGTTTTTCCTGGCTA 60.809 50.000 0.00 0.00 37.07 3.93
2356 5676 3.421844 GTCAGTGGTTTTTCCTGGCTAT 58.578 45.455 0.00 0.00 37.07 2.97
2357 5677 3.826729 GTCAGTGGTTTTTCCTGGCTATT 59.173 43.478 0.00 0.00 37.07 1.73
2358 5678 4.280929 GTCAGTGGTTTTTCCTGGCTATTT 59.719 41.667 0.00 0.00 37.07 1.40
2359 5679 4.898861 TCAGTGGTTTTTCCTGGCTATTTT 59.101 37.500 0.00 0.00 37.07 1.82
2362 5682 5.602561 AGTGGTTTTTCCTGGCTATTTTTCT 59.397 36.000 0.00 0.00 37.07 2.52
2364 5684 5.600484 TGGTTTTTCCTGGCTATTTTTCTCA 59.400 36.000 0.00 0.00 37.07 3.27
2365 5685 5.926542 GGTTTTTCCTGGCTATTTTTCTCAC 59.073 40.000 0.00 0.00 0.00 3.51
2366 5686 6.239317 GGTTTTTCCTGGCTATTTTTCTCACT 60.239 38.462 0.00 0.00 0.00 3.41
2367 5687 5.964958 TTTCCTGGCTATTTTTCTCACTG 57.035 39.130 0.00 0.00 0.00 3.66
2371 5691 4.005650 CTGGCTATTTTTCTCACTGCTGA 58.994 43.478 0.00 0.00 0.00 4.26
2373 5693 4.216257 TGGCTATTTTTCTCACTGCTGAAC 59.784 41.667 0.00 0.00 0.00 3.18
2375 5695 5.388944 GCTATTTTTCTCACTGCTGAACTG 58.611 41.667 0.00 0.00 0.00 3.16
2376 5696 4.843220 ATTTTTCTCACTGCTGAACTGG 57.157 40.909 0.00 0.00 0.00 4.00
2377 5697 2.260844 TTTCTCACTGCTGAACTGGG 57.739 50.000 0.00 0.00 0.00 4.45
2378 5698 0.250467 TTCTCACTGCTGAACTGGGC 60.250 55.000 0.00 0.00 0.00 5.36
2379 5699 1.071987 CTCACTGCTGAACTGGGCA 59.928 57.895 0.00 0.00 36.94 5.36
2394 5714 4.157958 GCAGCGCCGCTTCTTCTG 62.158 66.667 9.89 0.00 36.40 3.02
2398 5718 3.181967 CGCCGCTTCTTCTGACCG 61.182 66.667 0.00 0.00 0.00 4.79
2399 5719 2.815647 GCCGCTTCTTCTGACCGG 60.816 66.667 0.00 0.00 39.14 5.28
2403 5723 1.293498 GCTTCTTCTGACCGGCTCA 59.707 57.895 0.00 3.72 0.00 4.26
2415 5735 3.474570 GGCTCAGCCGATGGAGGT 61.475 66.667 0.00 0.00 39.62 3.85
2416 5736 2.107953 GCTCAGCCGATGGAGGTC 59.892 66.667 0.00 0.00 0.00 3.85
2417 5737 2.415010 CTCAGCCGATGGAGGTCG 59.585 66.667 0.00 0.00 41.13 4.79
2418 5738 3.781770 CTCAGCCGATGGAGGTCGC 62.782 68.421 0.00 0.00 40.17 5.19
2419 5739 3.842923 CAGCCGATGGAGGTCGCT 61.843 66.667 0.00 0.00 40.17 4.93
2424 5744 4.933064 GATGGAGGTCGCTCGCGG 62.933 72.222 6.13 0.00 40.25 6.46
2444 5764 3.534160 CGTCCAACGTCCAAGTCG 58.466 61.111 0.00 0.00 36.74 4.18
2445 5765 2.019951 CGTCCAACGTCCAAGTCGG 61.020 63.158 0.00 0.00 36.74 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 5.640357 AGAAGTGTTTTAGACAACAACGTGA 59.360 36.000 0.00 0.00 40.65 4.35
76 83 0.552615 AGGGCTTGGATGGGTTAGGT 60.553 55.000 0.00 0.00 0.00 3.08
250 272 8.225603 AGAAAGACTTAAGTGAAAAGAATGCA 57.774 30.769 14.14 0.00 0.00 3.96
268 308 3.041508 AGGAGCGGTGTTTAGAAAGAC 57.958 47.619 0.00 0.00 0.00 3.01
283 323 3.004106 GGACATGTCAATATGCAAGGAGC 59.996 47.826 26.47 0.90 45.96 4.70
348 388 8.356657 ACTTCTCTCGTTATCTGAAATATCTGG 58.643 37.037 0.00 0.00 0.00 3.86
381 423 1.210204 TGCTTTCCCTCTCCCTGCAT 61.210 55.000 0.00 0.00 0.00 3.96
462 505 3.595173 TGCGCTTGTTGTACTGATATGT 58.405 40.909 9.73 0.00 0.00 2.29
463 506 3.618594 ACTGCGCTTGTTGTACTGATATG 59.381 43.478 9.73 0.00 0.00 1.78
508 584 7.649057 TCTTAGTATCATGTGTACCAAGATCG 58.351 38.462 13.34 0.00 33.70 3.69
720 797 2.202783 GCATTGTTGCGCCCATCC 60.203 61.111 4.18 0.00 39.49 3.51
731 808 1.226745 CATGATTGGCGCGCATTGT 60.227 52.632 34.42 15.54 0.00 2.71
735 812 0.249826 TAGATCATGATTGGCGCGCA 60.250 50.000 34.42 14.59 0.00 6.09
769 846 5.669477 AGATACTTGCAACATCTCCTCTTC 58.331 41.667 11.41 0.00 0.00 2.87
777 854 2.615912 GGGCTGAGATACTTGCAACATC 59.384 50.000 0.00 1.36 0.00 3.06
781 858 1.210478 GAGGGGCTGAGATACTTGCAA 59.790 52.381 0.00 0.00 0.00 4.08
1099 1245 1.443194 GCTCTCGTTCGCCGTTGTA 60.443 57.895 0.00 0.00 37.94 2.41
1258 1425 1.271856 TCCTCGGCTACCAACATTGA 58.728 50.000 0.00 0.00 0.00 2.57
1286 1453 9.283768 ACAATCATGTTGTCTAATGTTACAGAA 57.716 29.630 7.56 0.00 35.91 3.02
1294 1472 5.288472 TCGTCGACAATCATGTTGTCTAATG 59.712 40.000 25.16 20.30 44.79 1.90
1338 1516 1.606668 CACATGGCTACCAACGTTGTT 59.393 47.619 25.63 15.63 36.95 2.83
1343 1521 0.447801 GCTTCACATGGCTACCAACG 59.552 55.000 0.00 0.00 36.95 4.10
1354 1532 1.251251 GTTTCTGGCAGGCTTCACAT 58.749 50.000 15.73 0.00 0.00 3.21
1396 1574 6.788684 TCTCGATTCTTCGGTAGATCTTAG 57.211 41.667 0.00 0.00 45.53 2.18
1452 1630 6.179756 TGCCACCGATGCTTAATAATATCAT 58.820 36.000 0.00 0.00 0.00 2.45
1453 1631 5.555966 TGCCACCGATGCTTAATAATATCA 58.444 37.500 0.00 0.00 0.00 2.15
1454 1632 6.149474 AGTTGCCACCGATGCTTAATAATATC 59.851 38.462 0.00 0.00 0.00 1.63
1455 1633 6.003950 AGTTGCCACCGATGCTTAATAATAT 58.996 36.000 0.00 0.00 0.00 1.28
1456 1634 5.373222 AGTTGCCACCGATGCTTAATAATA 58.627 37.500 0.00 0.00 0.00 0.98
1525 1703 7.769970 ACGGTTATTCGAATATTCCCTACAAAA 59.230 33.333 18.18 0.00 0.00 2.44
1527 1705 6.819284 ACGGTTATTCGAATATTCCCTACAA 58.181 36.000 18.18 0.00 0.00 2.41
1528 1706 6.409524 ACGGTTATTCGAATATTCCCTACA 57.590 37.500 18.18 0.00 0.00 2.74
1529 1707 7.343614 GAACGGTTATTCGAATATTCCCTAC 57.656 40.000 18.18 11.83 0.00 3.18
1542 1720 5.459110 TTGAGTAATGCGAACGGTTATTC 57.541 39.130 0.00 0.00 0.00 1.75
1543 1721 5.276678 CGATTGAGTAATGCGAACGGTTATT 60.277 40.000 0.00 0.00 0.00 1.40
1546 1724 2.347452 CGATTGAGTAATGCGAACGGTT 59.653 45.455 0.00 0.00 0.00 4.44
1547 1725 1.924524 CGATTGAGTAATGCGAACGGT 59.075 47.619 0.00 0.00 0.00 4.83
1548 1726 1.924524 ACGATTGAGTAATGCGAACGG 59.075 47.619 0.00 0.00 0.00 4.44
1553 2378 5.986936 TCTCTAGTACGATTGAGTAATGCG 58.013 41.667 0.00 0.00 0.00 4.73
1557 2382 7.499563 AGAAGCATCTCTAGTACGATTGAGTAA 59.500 37.037 0.00 0.00 0.00 2.24
1574 2399 6.658391 AGCAAACTATTTGAGAAGAAGCATCT 59.342 34.615 5.49 0.00 43.26 2.90
1589 2414 3.213506 TGCGCATGGATAGCAAACTATT 58.786 40.909 5.66 0.00 39.28 1.73
1591 2416 2.323968 TGCGCATGGATAGCAAACTA 57.676 45.000 5.66 0.00 38.01 2.24
1592 2417 1.462616 TTGCGCATGGATAGCAAACT 58.537 45.000 12.75 0.00 46.23 2.66
1601 2426 2.816672 TGAAACTTACATTGCGCATGGA 59.183 40.909 12.75 5.70 37.17 3.41
1657 2482 9.965824 CAATTAGTCAGAGTGGTTGTTTATTTT 57.034 29.630 0.00 0.00 0.00 1.82
1658 2483 9.131791 ACAATTAGTCAGAGTGGTTGTTTATTT 57.868 29.630 4.90 0.00 0.00 1.40
1659 2484 8.691661 ACAATTAGTCAGAGTGGTTGTTTATT 57.308 30.769 4.90 0.00 0.00 1.40
1660 2485 8.691661 AACAATTAGTCAGAGTGGTTGTTTAT 57.308 30.769 13.22 0.00 35.50 1.40
1661 2486 9.616156 TTAACAATTAGTCAGAGTGGTTGTTTA 57.384 29.630 19.64 12.70 38.68 2.01
1671 2496 8.589629 GCATTTGCATTTAACAATTAGTCAGAG 58.410 33.333 0.00 0.00 41.59 3.35
1687 2512 4.748277 AGAAAGCCATAGCATTTGCATT 57.252 36.364 5.20 0.00 45.16 3.56
1702 2527 4.607293 ATTCCTCCAAACCAAAGAAAGC 57.393 40.909 0.00 0.00 0.00 3.51
1705 2530 8.811994 CCTATAAAATTCCTCCAAACCAAAGAA 58.188 33.333 0.00 0.00 0.00 2.52
1706 2531 8.174085 TCCTATAAAATTCCTCCAAACCAAAGA 58.826 33.333 0.00 0.00 0.00 2.52
1707 2532 8.361169 TCCTATAAAATTCCTCCAAACCAAAG 57.639 34.615 0.00 0.00 0.00 2.77
1708 2533 8.590204 GTTCCTATAAAATTCCTCCAAACCAAA 58.410 33.333 0.00 0.00 0.00 3.28
1709 2534 7.953493 AGTTCCTATAAAATTCCTCCAAACCAA 59.047 33.333 0.00 0.00 0.00 3.67
1710 2535 7.475299 AGTTCCTATAAAATTCCTCCAAACCA 58.525 34.615 0.00 0.00 0.00 3.67
1711 2536 7.834681 AGAGTTCCTATAAAATTCCTCCAAACC 59.165 37.037 0.00 0.00 0.00 3.27
1712 2537 8.809468 AGAGTTCCTATAAAATTCCTCCAAAC 57.191 34.615 0.00 0.00 0.00 2.93
1714 2539 9.502035 TCTAGAGTTCCTATAAAATTCCTCCAA 57.498 33.333 0.00 0.00 0.00 3.53
1715 2540 9.148879 CTCTAGAGTTCCTATAAAATTCCTCCA 57.851 37.037 11.89 0.00 0.00 3.86
1716 2541 8.590204 CCTCTAGAGTTCCTATAAAATTCCTCC 58.410 40.741 18.42 0.00 0.00 4.30
1717 2542 9.369672 TCCTCTAGAGTTCCTATAAAATTCCTC 57.630 37.037 18.42 0.00 0.00 3.71
1718 2543 9.906274 ATCCTCTAGAGTTCCTATAAAATTCCT 57.094 33.333 18.42 0.00 0.00 3.36
1756 2581 9.997172 AGTTCCTATAAAATTTCTCCAAATCCT 57.003 29.630 0.00 0.00 30.37 3.24
1808 2633 6.608002 TGAACCAAAGGGCTCTAAAGTAAAAA 59.392 34.615 0.00 0.00 37.90 1.94
1809 2634 6.130569 TGAACCAAAGGGCTCTAAAGTAAAA 58.869 36.000 0.00 0.00 37.90 1.52
1810 2635 5.697067 TGAACCAAAGGGCTCTAAAGTAAA 58.303 37.500 0.00 0.00 37.90 2.01
1811 2636 5.313280 TGAACCAAAGGGCTCTAAAGTAA 57.687 39.130 0.00 0.00 37.90 2.24
1812 2637 4.986054 TGAACCAAAGGGCTCTAAAGTA 57.014 40.909 0.00 0.00 37.90 2.24
1813 2638 3.876309 TGAACCAAAGGGCTCTAAAGT 57.124 42.857 0.00 0.00 37.90 2.66
1814 2639 5.745227 TCTATGAACCAAAGGGCTCTAAAG 58.255 41.667 0.00 0.00 37.90 1.85
1815 2640 5.772393 TCTATGAACCAAAGGGCTCTAAA 57.228 39.130 0.00 0.00 37.90 1.85
1816 2641 5.772393 TTCTATGAACCAAAGGGCTCTAA 57.228 39.130 0.00 0.00 37.90 2.10
1817 2642 5.772393 TTTCTATGAACCAAAGGGCTCTA 57.228 39.130 0.00 0.00 37.90 2.43
1818 2643 4.657814 TTTCTATGAACCAAAGGGCTCT 57.342 40.909 0.00 0.00 37.90 4.09
1819 2644 4.098501 CCATTTCTATGAACCAAAGGGCTC 59.901 45.833 0.00 0.00 33.50 4.70
1820 2645 4.026052 CCATTTCTATGAACCAAAGGGCT 58.974 43.478 0.00 0.00 33.50 5.19
1821 2646 4.023291 TCCATTTCTATGAACCAAAGGGC 58.977 43.478 0.00 0.00 33.50 5.19
1822 2647 6.183360 GGATTCCATTTCTATGAACCAAAGGG 60.183 42.308 0.00 0.00 35.37 3.95
1823 2648 6.608808 AGGATTCCATTTCTATGAACCAAAGG 59.391 38.462 5.29 0.00 33.37 3.11
1824 2649 7.651027 AGGATTCCATTTCTATGAACCAAAG 57.349 36.000 5.29 0.00 33.37 2.77
1825 2650 9.713684 AATAGGATTCCATTTCTATGAACCAAA 57.286 29.630 5.29 0.00 33.37 3.28
1826 2651 9.354673 GAATAGGATTCCATTTCTATGAACCAA 57.645 33.333 5.29 0.00 33.37 3.67
1827 2652 7.944554 GGAATAGGATTCCATTTCTATGAACCA 59.055 37.037 12.43 0.00 38.45 3.67
1828 2653 8.166726 AGGAATAGGATTCCATTTCTATGAACC 58.833 37.037 18.17 0.35 41.00 3.62
1831 2656 9.392506 TGTAGGAATAGGATTCCATTTCTATGA 57.607 33.333 18.17 1.36 41.00 2.15
1850 2675 9.621239 AGGATAGAAATCAATCCTATGTAGGAA 57.379 33.333 12.50 0.00 43.53 3.36
1851 2676 9.261035 GAGGATAGAAATCAATCCTATGTAGGA 57.739 37.037 11.01 11.01 43.99 2.94
1852 2677 8.482128 GGAGGATAGAAATCAATCCTATGTAGG 58.518 40.741 3.91 0.00 43.08 3.18
1853 2678 9.040259 TGGAGGATAGAAATCAATCCTATGTAG 57.960 37.037 3.91 0.00 43.08 2.74
1854 2679 8.816894 GTGGAGGATAGAAATCAATCCTATGTA 58.183 37.037 3.91 0.00 43.08 2.29
1855 2680 7.293299 TGTGGAGGATAGAAATCAATCCTATGT 59.707 37.037 3.91 0.00 43.08 2.29
1856 2681 7.683578 TGTGGAGGATAGAAATCAATCCTATG 58.316 38.462 3.91 0.00 43.08 2.23
1857 2682 7.878621 TGTGGAGGATAGAAATCAATCCTAT 57.121 36.000 3.91 0.00 43.08 2.57
1858 2683 7.878621 ATGTGGAGGATAGAAATCAATCCTA 57.121 36.000 3.91 0.00 43.08 2.94
1859 2684 6.776887 ATGTGGAGGATAGAAATCAATCCT 57.223 37.500 3.56 3.56 45.48 3.24
1860 2685 7.503566 TGAAATGTGGAGGATAGAAATCAATCC 59.496 37.037 0.00 0.00 38.83 3.01
1861 2686 8.455903 TGAAATGTGGAGGATAGAAATCAATC 57.544 34.615 0.00 0.00 33.41 2.67
1863 2688 9.565090 CTATGAAATGTGGAGGATAGAAATCAA 57.435 33.333 0.00 0.00 33.41 2.57
1864 2689 8.159447 CCTATGAAATGTGGAGGATAGAAATCA 58.841 37.037 0.00 0.00 33.41 2.57
1865 2690 8.378565 TCCTATGAAATGTGGAGGATAGAAATC 58.621 37.037 0.00 0.00 31.25 2.17
1866 2691 8.280258 TCCTATGAAATGTGGAGGATAGAAAT 57.720 34.615 0.00 0.00 31.25 2.17
1867 2692 7.690454 TCCTATGAAATGTGGAGGATAGAAA 57.310 36.000 0.00 0.00 31.25 2.52
1868 2693 7.690454 TTCCTATGAAATGTGGAGGATAGAA 57.310 36.000 0.00 0.00 36.22 2.10
1869 2694 7.690454 TTTCCTATGAAATGTGGAGGATAGA 57.310 36.000 0.00 0.00 36.22 1.98
1870 2695 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
1872 2697 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
1873 2698 9.540538 TTTTATTTTCCTATGAAATGTGGAGGA 57.459 29.630 0.00 0.00 40.08 3.71
1888 2713 9.975218 TGAGTCTAGGCTTATTTTTATTTTCCT 57.025 29.630 0.00 0.00 0.00 3.36
1893 2718 9.920946 TCCATTGAGTCTAGGCTTATTTTTATT 57.079 29.630 0.00 0.00 0.00 1.40
1894 2719 9.920946 TTCCATTGAGTCTAGGCTTATTTTTAT 57.079 29.630 0.00 0.00 0.00 1.40
1895 2720 9.747898 TTTCCATTGAGTCTAGGCTTATTTTTA 57.252 29.630 0.00 0.00 0.00 1.52
1896 2721 8.650143 TTTCCATTGAGTCTAGGCTTATTTTT 57.350 30.769 0.00 0.00 0.00 1.94
1897 2722 8.650143 TTTTCCATTGAGTCTAGGCTTATTTT 57.350 30.769 0.00 0.00 0.00 1.82
1898 2723 8.650143 TTTTTCCATTGAGTCTAGGCTTATTT 57.350 30.769 0.00 0.00 0.00 1.40
1899 2724 8.829373 ATTTTTCCATTGAGTCTAGGCTTATT 57.171 30.769 0.00 0.00 0.00 1.40
1900 2725 7.503902 GGATTTTTCCATTGAGTCTAGGCTTAT 59.496 37.037 0.00 0.00 0.00 1.73
1901 2726 6.828785 GGATTTTTCCATTGAGTCTAGGCTTA 59.171 38.462 0.00 0.00 0.00 3.09
1902 2727 5.654209 GGATTTTTCCATTGAGTCTAGGCTT 59.346 40.000 0.00 0.00 0.00 4.35
1903 2728 5.044550 AGGATTTTTCCATTGAGTCTAGGCT 60.045 40.000 0.00 0.00 0.00 4.58
1904 2729 5.196695 AGGATTTTTCCATTGAGTCTAGGC 58.803 41.667 0.00 0.00 0.00 3.93
1905 2730 7.394359 TCAAAGGATTTTTCCATTGAGTCTAGG 59.606 37.037 8.22 0.00 40.99 3.02
1906 2731 8.340618 TCAAAGGATTTTTCCATTGAGTCTAG 57.659 34.615 8.22 0.00 40.99 2.43
1907 2732 8.742777 CATCAAAGGATTTTTCCATTGAGTCTA 58.257 33.333 15.35 0.00 46.34 2.59
1908 2733 7.234166 ACATCAAAGGATTTTTCCATTGAGTCT 59.766 33.333 15.35 0.58 46.34 3.24
1909 2734 7.381323 ACATCAAAGGATTTTTCCATTGAGTC 58.619 34.615 15.35 0.00 46.34 3.36
1910 2735 7.015487 TGACATCAAAGGATTTTTCCATTGAGT 59.985 33.333 15.35 13.14 46.34 3.41
1911 2736 7.380536 TGACATCAAAGGATTTTTCCATTGAG 58.619 34.615 15.35 10.94 46.34 3.02
1912 2737 7.300556 TGACATCAAAGGATTTTTCCATTGA 57.699 32.000 13.24 13.24 46.91 2.57
1913 2738 7.966246 TTGACATCAAAGGATTTTTCCATTG 57.034 32.000 4.09 4.09 35.03 2.82
1914 2739 8.377034 TGATTGACATCAAAGGATTTTTCCATT 58.623 29.630 0.00 0.00 35.03 3.16
1915 2740 7.909518 TGATTGACATCAAAGGATTTTTCCAT 58.090 30.769 0.00 0.00 35.03 3.41
1916 2741 7.300556 TGATTGACATCAAAGGATTTTTCCA 57.699 32.000 0.00 0.00 35.03 3.53
1942 2767 9.995003 GAGTAGAAATAGGAAATGAGATGTCAT 57.005 33.333 0.00 0.00 46.01 3.06
1943 2768 8.981659 TGAGTAGAAATAGGAAATGAGATGTCA 58.018 33.333 0.00 0.00 37.02 3.58
1944 2769 9.995003 ATGAGTAGAAATAGGAAATGAGATGTC 57.005 33.333 0.00 0.00 0.00 3.06
1962 2787 9.593565 ACATGTATCTCAAATCCTATGAGTAGA 57.406 33.333 0.00 0.00 43.77 2.59
1963 2788 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
1964 2789 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
1965 2790 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
1966 2791 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
1967 2792 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
1968 2793 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
1978 2803 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
1979 2804 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
1980 2805 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
1981 2806 9.685276 TTTTGTAGGAAATGAGATGACATGTAT 57.315 29.630 0.00 0.00 0.00 2.29
1982 2807 9.685276 ATTTTGTAGGAAATGAGATGACATGTA 57.315 29.630 0.00 0.00 0.00 2.29
1983 2808 8.585471 ATTTTGTAGGAAATGAGATGACATGT 57.415 30.769 0.00 0.00 0.00 3.21
1984 2809 9.865321 AAATTTTGTAGGAAATGAGATGACATG 57.135 29.630 0.00 0.00 30.06 3.21
1986 2811 9.300681 AGAAATTTTGTAGGAAATGAGATGACA 57.699 29.630 0.00 0.00 30.06 3.58
2015 2840 9.186837 GGTTCATAGGATAGGATTATCGTAAGA 57.813 37.037 0.00 1.48 40.96 2.10
2016 2841 8.967918 TGGTTCATAGGATAGGATTATCGTAAG 58.032 37.037 0.00 0.00 39.05 2.34
2017 2842 8.888836 TGGTTCATAGGATAGGATTATCGTAA 57.111 34.615 0.00 0.00 39.05 3.18
2018 2843 8.888836 TTGGTTCATAGGATAGGATTATCGTA 57.111 34.615 0.00 0.00 39.58 3.43
2019 2844 7.792364 TTGGTTCATAGGATAGGATTATCGT 57.208 36.000 0.00 0.00 37.20 3.73
2020 2845 9.502091 TTTTTGGTTCATAGGATAGGATTATCG 57.498 33.333 0.00 0.00 37.20 2.92
2159 2984 9.682465 AATAGGGGTAAAAACTAGAATTCACTC 57.318 33.333 8.44 0.00 0.00 3.51
2166 2991 9.816787 ATGTCAAAATAGGGGTAAAAACTAGAA 57.183 29.630 0.00 0.00 0.00 2.10
2167 2992 9.816787 AATGTCAAAATAGGGGTAAAAACTAGA 57.183 29.630 0.00 0.00 0.00 2.43
2173 2998 9.549078 GTCAAAAATGTCAAAATAGGGGTAAAA 57.451 29.630 0.00 0.00 0.00 1.52
2174 2999 8.705594 TGTCAAAAATGTCAAAATAGGGGTAAA 58.294 29.630 0.00 0.00 0.00 2.01
2175 3000 8.145122 GTGTCAAAAATGTCAAAATAGGGGTAA 58.855 33.333 0.00 0.00 0.00 2.85
2176 3001 7.507616 AGTGTCAAAAATGTCAAAATAGGGGTA 59.492 33.333 0.00 0.00 0.00 3.69
2179 3004 9.927668 ATTAGTGTCAAAAATGTCAAAATAGGG 57.072 29.630 0.00 0.00 0.00 3.53
2196 5516 8.271458 TCTTGCTAAATGGGATAATTAGTGTCA 58.729 33.333 0.00 0.00 0.00 3.58
2197 5517 8.677148 TCTTGCTAAATGGGATAATTAGTGTC 57.323 34.615 0.00 0.00 0.00 3.67
2198 5518 9.646522 AATCTTGCTAAATGGGATAATTAGTGT 57.353 29.630 0.00 0.00 0.00 3.55
2208 5528 5.517924 TGGATGAAATCTTGCTAAATGGGA 58.482 37.500 0.00 0.00 44.71 4.37
2209 5529 5.857471 TGGATGAAATCTTGCTAAATGGG 57.143 39.130 0.00 0.00 44.71 4.00
2210 5530 8.726870 AAAATGGATGAAATCTTGCTAAATGG 57.273 30.769 0.00 0.00 44.71 3.16
2212 5532 9.822185 GGTAAAATGGATGAAATCTTGCTAAAT 57.178 29.630 0.00 0.00 44.71 1.40
2213 5533 8.257306 GGGTAAAATGGATGAAATCTTGCTAAA 58.743 33.333 0.00 0.00 44.71 1.85
2214 5534 7.147742 GGGGTAAAATGGATGAAATCTTGCTAA 60.148 37.037 0.00 0.00 44.71 3.09
2215 5535 6.323739 GGGGTAAAATGGATGAAATCTTGCTA 59.676 38.462 0.00 0.00 44.71 3.49
2216 5536 5.129320 GGGGTAAAATGGATGAAATCTTGCT 59.871 40.000 0.00 0.00 44.71 3.91
2217 5537 5.104982 TGGGGTAAAATGGATGAAATCTTGC 60.105 40.000 0.00 0.00 44.71 4.01
2219 5539 7.754091 AATGGGGTAAAATGGATGAAATCTT 57.246 32.000 0.00 0.00 44.71 2.40
2220 5540 7.754091 AAATGGGGTAAAATGGATGAAATCT 57.246 32.000 0.00 0.00 44.71 2.40
2221 5541 7.657354 GCTAAATGGGGTAAAATGGATGAAATC 59.343 37.037 0.00 0.00 44.55 2.17
2222 5542 7.127032 TGCTAAATGGGGTAAAATGGATGAAAT 59.873 33.333 0.00 0.00 0.00 2.17
2223 5543 6.441924 TGCTAAATGGGGTAAAATGGATGAAA 59.558 34.615 0.00 0.00 0.00 2.69
2225 5545 5.523588 TGCTAAATGGGGTAAAATGGATGA 58.476 37.500 0.00 0.00 0.00 2.92
2226 5546 5.867903 TGCTAAATGGGGTAAAATGGATG 57.132 39.130 0.00 0.00 0.00 3.51
2227 5547 6.882768 TTTGCTAAATGGGGTAAAATGGAT 57.117 33.333 0.00 0.00 0.00 3.41
2228 5548 6.688073 TTTTGCTAAATGGGGTAAAATGGA 57.312 33.333 0.00 0.00 0.00 3.41
2229 5549 7.392953 ACATTTTTGCTAAATGGGGTAAAATGG 59.607 33.333 21.05 4.80 41.88 3.16
2230 5550 8.334263 ACATTTTTGCTAAATGGGGTAAAATG 57.666 30.769 21.05 0.00 42.61 2.32
2231 5551 8.791675 CAACATTTTTGCTAAATGGGGTAAAAT 58.208 29.630 21.05 0.00 40.84 1.82
2232 5552 7.229506 CCAACATTTTTGCTAAATGGGGTAAAA 59.770 33.333 21.05 0.00 40.84 1.52
2234 5554 6.234177 CCAACATTTTTGCTAAATGGGGTAA 58.766 36.000 21.05 0.00 40.84 2.85
2238 5558 4.070716 TGCCAACATTTTTGCTAAATGGG 58.929 39.130 21.05 16.27 40.84 4.00
2239 5559 4.514441 TGTGCCAACATTTTTGCTAAATGG 59.486 37.500 21.05 14.62 40.84 3.16
2241 5561 5.367302 ACTGTGCCAACATTTTTGCTAAAT 58.633 33.333 0.00 0.00 35.22 1.40
2242 5562 4.764172 ACTGTGCCAACATTTTTGCTAAA 58.236 34.783 0.00 0.00 35.22 1.85
2243 5563 4.399004 ACTGTGCCAACATTTTTGCTAA 57.601 36.364 0.00 0.00 35.22 3.09
2244 5564 4.399004 AACTGTGCCAACATTTTTGCTA 57.601 36.364 0.00 0.00 35.22 3.49
2246 5566 4.260579 GGTAAACTGTGCCAACATTTTTGC 60.261 41.667 0.46 0.00 39.23 3.68
2248 5568 4.447290 GGGTAAACTGTGCCAACATTTTT 58.553 39.130 0.46 0.00 39.23 1.94
2256 5576 2.390225 AAATGGGGTAAACTGTGCCA 57.610 45.000 0.00 0.00 32.51 4.92
2257 5577 5.414789 AATTAAATGGGGTAAACTGTGCC 57.585 39.130 0.00 0.00 0.00 5.01
2258 5578 7.737972 AAAAATTAAATGGGGTAAACTGTGC 57.262 32.000 0.00 0.00 0.00 4.57
2282 5602 2.507484 CCACCAGTCAGAATGCTCAAA 58.493 47.619 0.00 0.00 34.76 2.69
2283 5603 1.271543 CCCACCAGTCAGAATGCTCAA 60.272 52.381 0.00 0.00 34.76 3.02
2284 5604 0.325933 CCCACCAGTCAGAATGCTCA 59.674 55.000 0.00 0.00 34.76 4.26
2287 5607 0.036732 TGACCCACCAGTCAGAATGC 59.963 55.000 0.00 0.00 41.78 3.56
2293 5613 1.214175 ACAATTGTGACCCACCAGTCA 59.786 47.619 11.07 0.00 44.38 3.41
2294 5614 1.880027 GACAATTGTGACCCACCAGTC 59.120 52.381 17.58 0.00 37.28 3.51
2295 5615 1.813862 CGACAATTGTGACCCACCAGT 60.814 52.381 17.58 0.00 32.73 4.00
2297 5617 0.536233 CCGACAATTGTGACCCACCA 60.536 55.000 17.58 0.00 32.73 4.17
2298 5618 1.241315 CCCGACAATTGTGACCCACC 61.241 60.000 17.58 0.00 32.73 4.61
2300 5620 0.250553 GACCCGACAATTGTGACCCA 60.251 55.000 17.58 0.00 0.00 4.51
2302 5622 0.250553 TGGACCCGACAATTGTGACC 60.251 55.000 17.58 11.89 0.00 4.02
2303 5623 1.156736 CTGGACCCGACAATTGTGAC 58.843 55.000 17.58 1.01 0.00 3.67
2304 5624 0.605319 GCTGGACCCGACAATTGTGA 60.605 55.000 17.58 0.00 0.00 3.58
2305 5625 0.606401 AGCTGGACCCGACAATTGTG 60.606 55.000 17.58 8.34 0.00 3.33
2306 5626 0.606401 CAGCTGGACCCGACAATTGT 60.606 55.000 11.78 11.78 0.00 2.71
2307 5627 0.321564 TCAGCTGGACCCGACAATTG 60.322 55.000 15.13 3.24 0.00 2.32
2308 5628 0.321653 GTCAGCTGGACCCGACAATT 60.322 55.000 15.13 0.00 40.83 2.32
2310 5630 1.480212 ATGTCAGCTGGACCCGACAA 61.480 55.000 15.13 0.00 46.38 3.18
2311 5631 1.913262 ATGTCAGCTGGACCCGACA 60.913 57.895 15.13 10.07 46.38 4.35
2312 5632 1.448540 CATGTCAGCTGGACCCGAC 60.449 63.158 15.13 3.77 46.38 4.79
2313 5633 2.981302 CATGTCAGCTGGACCCGA 59.019 61.111 15.13 0.00 46.38 5.14
2314 5634 2.821366 GCATGTCAGCTGGACCCG 60.821 66.667 15.13 5.91 46.38 5.28
2315 5635 2.439156 GGCATGTCAGCTGGACCC 60.439 66.667 15.13 4.05 46.38 4.46
2316 5636 2.042831 GTGGCATGTCAGCTGGACC 61.043 63.158 15.13 8.97 46.38 4.46
2318 5638 2.046988 CGTGGCATGTCAGCTGGA 60.047 61.111 15.13 0.70 34.17 3.86
2320 5640 1.668793 TGACGTGGCATGTCAGCTG 60.669 57.895 32.79 7.63 39.05 4.24
2324 5644 4.359475 CACTGACGTGGCATGTCA 57.641 55.556 33.57 33.57 41.45 3.58
2332 5652 1.333619 CCAGGAAAAACCACTGACGTG 59.666 52.381 0.00 0.00 42.04 4.49
2333 5653 1.675552 CCAGGAAAAACCACTGACGT 58.324 50.000 0.00 0.00 42.04 4.34
2335 5655 1.692411 AGCCAGGAAAAACCACTGAC 58.308 50.000 0.00 0.00 42.04 3.51
2336 5656 3.806949 ATAGCCAGGAAAAACCACTGA 57.193 42.857 0.00 0.00 42.04 3.41
2337 5657 4.871933 AAATAGCCAGGAAAAACCACTG 57.128 40.909 0.00 0.00 42.04 3.66
2338 5658 5.602561 AGAAAAATAGCCAGGAAAAACCACT 59.397 36.000 0.00 0.00 42.04 4.00
2339 5659 5.853936 AGAAAAATAGCCAGGAAAAACCAC 58.146 37.500 0.00 0.00 42.04 4.16
2341 5661 5.926542 GTGAGAAAAATAGCCAGGAAAAACC 59.073 40.000 0.00 0.00 39.35 3.27
2342 5662 6.642540 CAGTGAGAAAAATAGCCAGGAAAAAC 59.357 38.462 0.00 0.00 0.00 2.43
2343 5663 6.738453 GCAGTGAGAAAAATAGCCAGGAAAAA 60.738 38.462 0.00 0.00 0.00 1.94
2344 5664 5.278957 GCAGTGAGAAAAATAGCCAGGAAAA 60.279 40.000 0.00 0.00 0.00 2.29
2345 5665 4.218417 GCAGTGAGAAAAATAGCCAGGAAA 59.782 41.667 0.00 0.00 0.00 3.13
2346 5666 3.758554 GCAGTGAGAAAAATAGCCAGGAA 59.241 43.478 0.00 0.00 0.00 3.36
2347 5667 3.009473 AGCAGTGAGAAAAATAGCCAGGA 59.991 43.478 0.00 0.00 0.00 3.86
2351 5671 4.457257 AGTTCAGCAGTGAGAAAAATAGCC 59.543 41.667 0.00 0.00 32.98 3.93
2353 5673 5.106396 CCCAGTTCAGCAGTGAGAAAAATAG 60.106 44.000 0.00 0.00 32.98 1.73
2354 5674 4.761739 CCCAGTTCAGCAGTGAGAAAAATA 59.238 41.667 0.00 0.00 32.98 1.40
2355 5675 3.571401 CCCAGTTCAGCAGTGAGAAAAAT 59.429 43.478 0.00 0.00 32.98 1.82
2356 5676 2.951642 CCCAGTTCAGCAGTGAGAAAAA 59.048 45.455 0.00 0.00 32.98 1.94
2357 5677 2.575532 CCCAGTTCAGCAGTGAGAAAA 58.424 47.619 0.00 0.00 32.98 2.29
2358 5678 1.815408 GCCCAGTTCAGCAGTGAGAAA 60.815 52.381 0.00 0.00 32.98 2.52
2359 5679 0.250467 GCCCAGTTCAGCAGTGAGAA 60.250 55.000 0.00 0.00 32.98 2.87
2362 5682 3.239464 TGCCCAGTTCAGCAGTGA 58.761 55.556 0.00 0.00 33.08 3.41
2377 5697 4.157958 CAGAAGAAGCGGCGCTGC 62.158 66.667 37.09 34.59 39.62 5.25
2378 5698 2.433145 TCAGAAGAAGCGGCGCTG 60.433 61.111 37.09 22.43 39.62 5.18
2379 5699 2.433318 GTCAGAAGAAGCGGCGCT 60.433 61.111 31.35 31.35 42.56 5.92
2380 5700 3.491652 GGTCAGAAGAAGCGGCGC 61.492 66.667 26.86 26.86 0.00 6.53
2381 5701 3.181967 CGGTCAGAAGAAGCGGCG 61.182 66.667 0.51 0.51 34.20 6.46
2385 5705 1.293498 TGAGCCGGTCAGAAGAAGC 59.707 57.895 1.90 0.00 0.00 3.86
2398 5718 3.453070 GACCTCCATCGGCTGAGCC 62.453 68.421 14.89 14.89 46.75 4.70
2399 5719 2.107953 GACCTCCATCGGCTGAGC 59.892 66.667 0.00 0.00 0.00 4.26
2403 5723 3.532155 GAGCGACCTCCATCGGCT 61.532 66.667 0.00 0.00 42.49 5.52
2404 5724 4.933064 CGAGCGACCTCCATCGGC 62.933 72.222 0.00 0.00 42.49 5.54
2407 5727 4.933064 CCGCGAGCGACCTCCATC 62.933 72.222 19.72 0.00 42.83 3.51
2428 5748 3.946907 CCGACTTGGACGTTGGAC 58.053 61.111 0.00 0.00 40.31 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.