Multiple sequence alignment - TraesCS3A01G330000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G330000 chr3A 100.000 2246 0 0 1 2246 574913605 574915850 0.000000e+00 4148
1 TraesCS3A01G330000 chr3A 96.393 305 11 0 1942 2246 599383210 599383514 9.260000e-139 503
2 TraesCS3A01G330000 chr3A 96.091 307 11 1 1940 2246 713782226 713782531 1.200000e-137 499
3 TraesCS3A01G330000 chr3A 96.370 303 10 1 1945 2246 109530 109228 4.310000e-137 497
4 TraesCS3A01G330000 chr3A 89.344 122 12 1 1261 1382 574928383 574928503 3.860000e-33 152
5 TraesCS3A01G330000 chr3B 90.177 1415 91 17 1 1386 571884529 571885924 0.000000e+00 1799
6 TraesCS3A01G330000 chr3B 96.333 300 11 0 1947 2246 751197963 751197664 5.570000e-136 494
7 TraesCS3A01G330000 chr3B 85.745 463 38 10 1511 1950 571886186 571886643 4.370000e-127 464
8 TraesCS3A01G330000 chr3D 90.973 1274 89 12 4 1262 436176054 436177316 0.000000e+00 1692
9 TraesCS3A01G330000 chr3D 87.028 424 31 8 1546 1950 436179543 436179961 7.310000e-125 457
10 TraesCS3A01G330000 chr3D 84.133 271 33 7 986 1256 436181356 436181616 1.030000e-63 254
11 TraesCS3A01G330000 chr3D 90.083 121 9 3 1262 1382 436214027 436214144 1.070000e-33 154
12 TraesCS3A01G330000 chr3D 94.253 87 4 1 1301 1386 436179290 436179376 5.030000e-27 132
13 TraesCS3A01G330000 chr7A 95.793 309 12 1 1938 2246 17018875 17018568 4.310000e-137 497
14 TraesCS3A01G330000 chr7A 96.078 306 11 1 1941 2246 612110094 612109790 4.310000e-137 497
15 TraesCS3A01G330000 chr4A 96.358 302 11 0 1945 2246 583541407 583541708 4.310000e-137 497
16 TraesCS3A01G330000 chr5A 96.633 297 10 0 1950 2246 708289818 708289522 5.570000e-136 494
17 TraesCS3A01G330000 chr1B 95.738 305 13 0 1942 2246 635918009 635918313 2.000000e-135 492


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G330000 chr3A 574913605 574915850 2245 False 4148.00 4148 100.00000 1 2246 1 chr3A.!!$F1 2245
1 TraesCS3A01G330000 chr3B 571884529 571886643 2114 False 1131.50 1799 87.96100 1 1950 2 chr3B.!!$F1 1949
2 TraesCS3A01G330000 chr3D 436176054 436181616 5562 False 633.75 1692 89.09675 4 1950 4 chr3D.!!$F2 1946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.832135 AGATGACCACCGTGTGTCCT 60.832 55.0 14.06 7.35 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 4627 0.108662 TGACGTGGCATGTCAGCTAG 60.109 55.0 32.79 0.0 39.05 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.279116 GCAGCCACGTGTCAAGCA 61.279 61.111 15.65 0.00 0.00 3.91
31 32 1.595109 CAGCCACGTGTCAAGCAGA 60.595 57.895 15.65 0.00 0.00 4.26
80 81 3.127533 GCGCGCCATCAGGTCTTT 61.128 61.111 23.24 0.00 37.19 2.52
89 90 1.244019 ATCAGGTCTTTGCCGCAACC 61.244 55.000 4.98 4.85 0.00 3.77
116 117 0.832135 AGATGACCACCGTGTGTCCT 60.832 55.000 14.06 7.35 0.00 3.85
316 320 2.291540 CCCCCAATAGCAAACTCTGGAA 60.292 50.000 0.00 0.00 32.88 3.53
531 543 1.376037 CCTCGTGGCCAACTTCCTC 60.376 63.158 7.24 0.00 0.00 3.71
537 549 2.464459 GGCCAACTTCCTCGATGCG 61.464 63.158 0.00 0.00 0.00 4.73
543 555 3.417275 CTTCCTCGATGCGGCGTCT 62.417 63.158 19.14 0.00 0.00 4.18
659 671 2.252012 ATCGGCCTCCTCCCCTTGTA 62.252 60.000 0.00 0.00 0.00 2.41
661 673 1.615424 GGCCTCCTCCCCTTGTACA 60.615 63.158 0.00 0.00 0.00 2.90
665 680 1.702957 CCTCCTCCCCTTGTACAACAA 59.297 52.381 3.59 0.00 36.54 2.83
678 693 1.081509 CAACAACGTCAATGCCGGG 60.082 57.895 2.18 0.00 0.00 5.73
724 739 2.720758 CTCTTCGCGCTGTTCCACG 61.721 63.158 5.56 0.00 0.00 4.94
873 888 2.274432 GTAAAGAAGGCCCCCGGG 59.726 66.667 15.80 15.80 38.57 5.73
1020 1035 3.918253 GATGGACGCCAAGGTGCCA 62.918 63.158 14.92 14.92 36.95 4.92
1149 1164 4.500116 GAGGTGAGCGGCGAGGAC 62.500 72.222 12.98 2.08 0.00 3.85
1171 1186 1.194781 GCTGGTGGAGAAGGTGAGGA 61.195 60.000 0.00 0.00 0.00 3.71
1191 1206 0.183971 TCGGGGTGTTGTTGGATTGT 59.816 50.000 0.00 0.00 0.00 2.71
1263 1304 6.921307 TCTTGTAATACGTGTATATGTGCTGG 59.079 38.462 0.00 0.00 0.00 4.85
1275 1757 2.283101 TGCTGGTGGCCATGGTTC 60.283 61.111 9.72 6.95 40.92 3.62
1293 1775 7.094205 CCATGGTTCTGTTTTAGCTTATCTGTT 60.094 37.037 2.57 0.00 0.00 3.16
1374 3351 5.243730 TGCTCAGTCCATGATCGATTATGTA 59.756 40.000 23.80 9.94 37.28 2.29
1382 3359 6.724441 TCCATGATCGATTATGTAAGGGTAGT 59.276 38.462 23.80 0.00 0.00 2.73
1390 3512 8.790718 TCGATTATGTAAGGGTAGTATCTTCAC 58.209 37.037 0.00 0.00 0.00 3.18
1391 3513 8.027771 CGATTATGTAAGGGTAGTATCTTCACC 58.972 40.741 0.00 0.00 0.00 4.02
1400 3522 5.585047 GGGTAGTATCTTCACCAATTGTGTC 59.415 44.000 4.43 0.00 45.61 3.67
1401 3523 6.407202 GGTAGTATCTTCACCAATTGTGTCT 58.593 40.000 4.43 0.00 45.61 3.41
1402 3524 7.364408 GGGTAGTATCTTCACCAATTGTGTCTA 60.364 40.741 4.43 0.00 45.61 2.59
1403 3525 8.038944 GGTAGTATCTTCACCAATTGTGTCTAA 58.961 37.037 4.43 0.00 45.61 2.10
1404 3526 9.088512 GTAGTATCTTCACCAATTGTGTCTAAG 57.911 37.037 4.43 8.05 45.61 2.18
1405 3527 7.907389 AGTATCTTCACCAATTGTGTCTAAGA 58.093 34.615 4.43 12.17 45.61 2.10
1457 3583 3.664107 TGCGGATAATAATGGAGCAGTC 58.336 45.455 0.00 0.00 0.00 3.51
1490 3616 4.363546 TTCCATAGGTAGAGTTTCCCCT 57.636 45.455 0.00 0.00 0.00 4.79
1491 3617 4.363546 TCCATAGGTAGAGTTTCCCCTT 57.636 45.455 0.00 0.00 0.00 3.95
1492 3618 4.706616 TCCATAGGTAGAGTTTCCCCTTT 58.293 43.478 0.00 0.00 0.00 3.11
1493 3619 5.105853 TCCATAGGTAGAGTTTCCCCTTTT 58.894 41.667 0.00 0.00 0.00 2.27
1497 3623 3.074094 AGGTAGAGTTTCCCCTTTTGGAC 59.926 47.826 0.00 0.00 44.07 4.02
1500 3626 3.296854 AGAGTTTCCCCTTTTGGACAAC 58.703 45.455 0.00 0.00 44.07 3.32
1502 3628 3.641436 GAGTTTCCCCTTTTGGACAACAT 59.359 43.478 0.00 0.00 44.07 2.71
1503 3629 4.810345 AGTTTCCCCTTTTGGACAACATA 58.190 39.130 0.00 0.00 44.07 2.29
1505 3631 5.480422 AGTTTCCCCTTTTGGACAACATATC 59.520 40.000 0.00 0.00 44.07 1.63
1506 3632 3.616219 TCCCCTTTTGGACAACATATCG 58.384 45.455 0.00 0.00 44.07 2.92
1507 3633 3.264706 TCCCCTTTTGGACAACATATCGA 59.735 43.478 0.00 0.00 44.07 3.59
1509 3635 4.461081 CCCCTTTTGGACAACATATCGAAA 59.539 41.667 0.00 0.00 44.07 3.46
1540 3696 4.158764 AGACGGTCAAATCAACAAACCAAA 59.841 37.500 11.27 0.00 0.00 3.28
1541 3697 5.017294 ACGGTCAAATCAACAAACCAAAT 57.983 34.783 0.00 0.00 0.00 2.32
1548 3704 8.755018 GTCAAATCAACAAACCAAATAAGACAG 58.245 33.333 0.00 0.00 0.00 3.51
1739 3939 1.656095 GAGAAGCATTTCGACAGTCGG 59.344 52.381 22.66 7.80 40.88 4.79
1761 3961 3.454375 CCATGCAATCATCCAAAGAAGC 58.546 45.455 0.00 0.00 0.00 3.86
1795 3995 3.862845 GGTTCGCAAAACAACAGAAACAT 59.137 39.130 1.85 0.00 0.00 2.71
1797 3997 5.689961 GGTTCGCAAAACAACAGAAACATAT 59.310 36.000 1.85 0.00 0.00 1.78
1798 3998 6.345723 GGTTCGCAAAACAACAGAAACATATG 60.346 38.462 0.00 0.00 0.00 1.78
1803 4003 6.146021 GCAAAACAACAGAAACATATGGAAGG 59.854 38.462 7.80 0.00 0.00 3.46
1806 4006 5.010282 ACAACAGAAACATATGGAAGGGTC 58.990 41.667 7.80 0.00 0.00 4.46
1814 4014 3.010584 ACATATGGAAGGGTCTTTGCAGT 59.989 43.478 7.80 0.00 31.79 4.40
1827 4027 0.886938 TTGCAGTTTTGGATCGCGGA 60.887 50.000 6.13 0.00 0.00 5.54
1828 4028 0.886938 TGCAGTTTTGGATCGCGGAA 60.887 50.000 6.13 0.00 0.00 4.30
1862 4062 9.893305 CCATTTAACTTGATCTTAACGTTTTCT 57.107 29.630 5.91 0.00 0.00 2.52
1875 4075 1.396996 CGTTTTCTACGCCTTCCATGG 59.603 52.381 4.97 4.97 44.26 3.66
1889 4089 4.262808 CCTTCCATGGTTCTGCCTATAGAG 60.263 50.000 12.58 0.00 38.35 2.43
1944 4148 9.829507 GTCTCTGGTTATCTAGTACTAGTAACA 57.170 37.037 30.59 23.70 34.77 2.41
1961 4165 9.367444 ACTAGTAACAAATAAGAGTGAATTCCG 57.633 33.333 2.27 0.00 0.00 4.30
1962 4166 7.611213 AGTAACAAATAAGAGTGAATTCCGG 57.389 36.000 2.27 0.00 0.00 5.14
1963 4167 7.166167 AGTAACAAATAAGAGTGAATTCCGGT 58.834 34.615 0.00 0.00 0.00 5.28
1965 4169 6.894339 ACAAATAAGAGTGAATTCCGGTTT 57.106 33.333 0.00 0.00 0.00 3.27
1966 4170 7.284919 ACAAATAAGAGTGAATTCCGGTTTT 57.715 32.000 0.00 0.00 0.00 2.43
1967 4171 7.722363 ACAAATAAGAGTGAATTCCGGTTTTT 58.278 30.769 0.00 0.00 0.00 1.94
1968 4172 8.852135 ACAAATAAGAGTGAATTCCGGTTTTTA 58.148 29.630 0.00 0.00 0.00 1.52
1969 4173 9.855021 CAAATAAGAGTGAATTCCGGTTTTTAT 57.145 29.630 0.00 0.00 0.00 1.40
1971 4175 6.510879 AAGAGTGAATTCCGGTTTTTATCC 57.489 37.500 0.00 0.00 0.00 2.59
1973 4177 4.021229 AGTGAATTCCGGTTTTTATCCCC 58.979 43.478 0.00 0.00 0.00 4.81
1974 4178 4.021229 GTGAATTCCGGTTTTTATCCCCT 58.979 43.478 0.00 0.00 0.00 4.79
1975 4179 5.044698 AGTGAATTCCGGTTTTTATCCCCTA 60.045 40.000 0.00 0.00 0.00 3.53
1976 4180 5.831525 GTGAATTCCGGTTTTTATCCCCTAT 59.168 40.000 0.00 0.00 0.00 2.57
1977 4181 6.322969 GTGAATTCCGGTTTTTATCCCCTATT 59.677 38.462 0.00 0.00 0.00 1.73
1979 4183 7.400627 TGAATTCCGGTTTTTATCCCCTATTTT 59.599 33.333 0.00 0.00 0.00 1.82
1980 4184 6.532988 TTCCGGTTTTTATCCCCTATTTTG 57.467 37.500 0.00 0.00 0.00 2.44
1982 4186 5.653330 TCCGGTTTTTATCCCCTATTTTGAC 59.347 40.000 0.00 0.00 0.00 3.18
1983 4187 5.655090 CCGGTTTTTATCCCCTATTTTGACT 59.345 40.000 0.00 0.00 0.00 3.41
1984 4188 6.153851 CCGGTTTTTATCCCCTATTTTGACTT 59.846 38.462 0.00 0.00 0.00 3.01
1985 4189 7.310175 CCGGTTTTTATCCCCTATTTTGACTTT 60.310 37.037 0.00 0.00 0.00 2.66
1986 4190 8.092068 CGGTTTTTATCCCCTATTTTGACTTTT 58.908 33.333 0.00 0.00 0.00 2.27
2010 4214 7.399245 TTTGACACTAATTACCCCATTTAGC 57.601 36.000 0.00 0.00 0.00 3.09
2011 4215 5.120399 TGACACTAATTACCCCATTTAGCG 58.880 41.667 0.00 0.00 0.00 4.26
2012 4216 4.457466 ACACTAATTACCCCATTTAGCGG 58.543 43.478 0.00 0.00 0.00 5.52
2013 4217 3.818773 CACTAATTACCCCATTTAGCGGG 59.181 47.826 0.00 0.00 45.70 6.13
2039 4243 7.775053 TTTCATCCATTATACCCCATTTAGC 57.225 36.000 0.00 0.00 0.00 3.09
2041 4245 6.245408 TCATCCATTATACCCCATTTAGCAC 58.755 40.000 0.00 0.00 0.00 4.40
2042 4246 5.654901 TCCATTATACCCCATTTAGCACA 57.345 39.130 0.00 0.00 0.00 4.57
2044 4248 6.068010 TCCATTATACCCCATTTAGCACAAG 58.932 40.000 0.00 0.00 0.00 3.16
2046 4250 6.239008 CCATTATACCCCATTTAGCACAAGTG 60.239 42.308 0.00 0.00 0.00 3.16
2047 4251 2.675658 ACCCCATTTAGCACAAGTGT 57.324 45.000 1.79 0.00 0.00 3.55
2048 4252 2.957474 ACCCCATTTAGCACAAGTGTT 58.043 42.857 1.79 0.00 0.00 3.32
2049 4253 2.627699 ACCCCATTTAGCACAAGTGTTG 59.372 45.455 1.79 0.00 0.00 3.33
2050 4254 2.610232 CCCCATTTAGCACAAGTGTTGC 60.610 50.000 1.79 0.00 0.00 4.17
2051 4255 2.610232 CCCATTTAGCACAAGTGTTGCC 60.610 50.000 1.79 0.00 0.00 4.52
2052 4256 2.035704 CCATTTAGCACAAGTGTTGCCA 59.964 45.455 1.79 0.00 0.00 4.92
2053 4257 2.861462 TTTAGCACAAGTGTTGCCAC 57.139 45.000 1.79 0.00 42.17 5.01
2055 4259 1.756430 TAGCACAAGTGTTGCCACAA 58.244 45.000 1.79 0.00 44.39 3.33
2056 4260 1.113788 AGCACAAGTGTTGCCACAAT 58.886 45.000 1.79 0.00 44.39 2.71
2057 4261 1.481772 AGCACAAGTGTTGCCACAATT 59.518 42.857 0.00 0.00 41.91 2.32
2059 4263 3.131933 AGCACAAGTGTTGCCACAATTTA 59.868 39.130 0.28 0.00 39.18 1.40
2060 4264 4.057432 GCACAAGTGTTGCCACAATTTAT 58.943 39.130 0.28 0.00 39.18 1.40
2061 4265 4.150451 GCACAAGTGTTGCCACAATTTATC 59.850 41.667 0.28 0.00 39.18 1.75
2062 4266 4.685628 CACAAGTGTTGCCACAATTTATCC 59.314 41.667 0.28 0.00 39.18 2.59
2067 4581 5.539955 AGTGTTGCCACAATTTATCCTCTTT 59.460 36.000 0.00 0.00 44.39 2.52
2083 4597 6.303021 TCCTCTTTTAAATTTTACGTGCGT 57.697 33.333 0.00 2.05 0.00 5.24
2085 4599 7.194962 TCCTCTTTTAAATTTTACGTGCGTTT 58.805 30.769 1.66 0.00 0.00 3.60
2089 4603 8.312524 TCTTTTAAATTTTACGTGCGTTTTGAC 58.687 29.630 1.66 0.00 0.00 3.18
2090 4604 6.493697 TTAAATTTTACGTGCGTTTTGACC 57.506 33.333 1.66 0.00 0.00 4.02
2091 4605 3.974871 ATTTTACGTGCGTTTTGACCT 57.025 38.095 1.66 0.00 0.00 3.85
2092 4606 5.421212 AATTTTACGTGCGTTTTGACCTA 57.579 34.783 1.66 0.00 0.00 3.08
2093 4607 3.857923 TTTACGTGCGTTTTGACCTAC 57.142 42.857 1.66 0.00 0.00 3.18
2094 4608 1.407434 TACGTGCGTTTTGACCTACG 58.593 50.000 1.66 0.00 40.55 3.51
2096 4610 1.864176 GTGCGTTTTGACCTACGGG 59.136 57.895 0.00 0.00 38.17 5.28
2109 4623 4.829872 ACCTACGGGTCATAATTTGTCA 57.170 40.909 0.00 0.00 43.38 3.58
2110 4624 4.766375 ACCTACGGGTCATAATTTGTCAG 58.234 43.478 0.00 0.00 43.38 3.51
2111 4625 4.127171 CCTACGGGTCATAATTTGTCAGG 58.873 47.826 0.00 0.00 0.00 3.86
2112 4626 3.713826 ACGGGTCATAATTTGTCAGGT 57.286 42.857 0.00 0.00 0.00 4.00
2113 4627 3.606687 ACGGGTCATAATTTGTCAGGTC 58.393 45.455 0.00 0.00 0.00 3.85
2114 4628 3.263425 ACGGGTCATAATTTGTCAGGTCT 59.737 43.478 0.00 0.00 0.00 3.85
2116 4630 5.050490 CGGGTCATAATTTGTCAGGTCTAG 58.950 45.833 0.00 0.00 0.00 2.43
2119 4633 5.525378 GGTCATAATTTGTCAGGTCTAGCTG 59.475 44.000 0.00 2.75 0.00 4.24
2120 4634 6.341316 GTCATAATTTGTCAGGTCTAGCTGA 58.659 40.000 7.75 7.75 0.00 4.26
2129 4643 2.670635 GTCTAGCTGACATGCCACG 58.329 57.895 0.00 0.00 44.73 4.94
2130 4644 0.108615 GTCTAGCTGACATGCCACGT 60.109 55.000 0.00 0.00 44.73 4.49
2132 4646 0.108662 CTAGCTGACATGCCACGTCA 60.109 55.000 0.00 0.00 41.00 4.35
2133 4647 0.320050 TAGCTGACATGCCACGTCAA 59.680 50.000 0.00 0.00 42.56 3.18
2134 4648 1.207593 GCTGACATGCCACGTCAAC 59.792 57.895 0.00 0.00 42.56 3.18
2135 4649 1.492873 CTGACATGCCACGTCAACG 59.507 57.895 0.00 0.12 42.56 4.10
2137 4651 2.668212 ACATGCCACGTCAACGGG 60.668 61.111 7.53 2.18 44.95 5.28
2139 4653 2.112297 ATGCCACGTCAACGGGTT 59.888 55.556 7.53 0.00 42.08 4.11
2140 4654 1.527380 ATGCCACGTCAACGGGTTT 60.527 52.632 7.53 0.00 42.08 3.27
2141 4655 1.104577 ATGCCACGTCAACGGGTTTT 61.105 50.000 7.53 0.00 42.08 2.43
2142 4656 1.313812 TGCCACGTCAACGGGTTTTT 61.314 50.000 7.53 0.00 42.08 1.94
2170 4684 9.589111 CTGTCTATTTTTCTCCCTACTAAACTC 57.411 37.037 0.00 0.00 0.00 3.01
2171 4685 9.096823 TGTCTATTTTTCTCCCTACTAAACTCA 57.903 33.333 0.00 0.00 0.00 3.41
2177 4691 5.593679 TCTCCCTACTAAACTCATTTCCG 57.406 43.478 0.00 0.00 0.00 4.30
2179 4693 4.098894 TCCCTACTAAACTCATTTCCGGT 58.901 43.478 0.00 0.00 0.00 5.28
2180 4694 4.533311 TCCCTACTAAACTCATTTCCGGTT 59.467 41.667 0.00 0.00 0.00 4.44
2181 4695 5.013391 TCCCTACTAAACTCATTTCCGGTTT 59.987 40.000 0.00 0.00 37.08 3.27
2182 4696 5.123344 CCCTACTAAACTCATTTCCGGTTTG 59.877 44.000 0.00 0.00 35.29 2.93
2183 4697 5.935789 CCTACTAAACTCATTTCCGGTTTGA 59.064 40.000 0.00 2.34 35.29 2.69
2184 4698 6.428771 CCTACTAAACTCATTTCCGGTTTGAA 59.571 38.462 0.00 0.00 35.29 2.69
2185 4699 6.313744 ACTAAACTCATTTCCGGTTTGAAG 57.686 37.500 0.00 0.00 35.29 3.02
2186 4700 5.826208 ACTAAACTCATTTCCGGTTTGAAGT 59.174 36.000 0.00 0.00 35.29 3.01
2188 4702 6.894339 AAACTCATTTCCGGTTTGAAGTAT 57.106 33.333 0.00 0.00 32.84 2.12
2189 4703 6.894339 AACTCATTTCCGGTTTGAAGTATT 57.106 33.333 0.00 0.00 0.00 1.89
2204 4718 5.914085 GAAGTATTCTGATGGGACGATTG 57.086 43.478 0.00 0.00 43.23 2.67
2205 4719 5.359194 AAGTATTCTGATGGGACGATTGT 57.641 39.130 0.00 0.00 0.00 2.71
2206 4720 6.479972 AAGTATTCTGATGGGACGATTGTA 57.520 37.500 0.00 0.00 0.00 2.41
2208 4722 5.598830 AGTATTCTGATGGGACGATTGTACT 59.401 40.000 0.00 0.00 0.00 2.73
2209 4723 4.819105 TTCTGATGGGACGATTGTACTT 57.181 40.909 0.00 0.00 0.00 2.24
2210 4724 4.123497 TCTGATGGGACGATTGTACTTG 57.877 45.455 0.00 0.00 0.00 3.16
2212 4726 4.405680 TCTGATGGGACGATTGTACTTGAT 59.594 41.667 0.00 0.00 0.00 2.57
2213 4727 4.693283 TGATGGGACGATTGTACTTGATC 58.307 43.478 0.00 0.00 0.00 2.92
2214 4728 4.161377 TGATGGGACGATTGTACTTGATCA 59.839 41.667 0.00 0.00 0.00 2.92
2215 4729 4.123497 TGGGACGATTGTACTTGATCAG 57.877 45.455 0.00 0.00 0.00 2.90
2216 4730 2.866762 GGGACGATTGTACTTGATCAGC 59.133 50.000 0.00 0.00 0.00 4.26
2217 4731 3.521560 GGACGATTGTACTTGATCAGCA 58.478 45.455 0.00 0.00 0.00 4.41
2219 4733 4.025396 GGACGATTGTACTTGATCAGCATG 60.025 45.833 0.00 0.00 37.54 4.06
2220 4734 4.507710 ACGATTGTACTTGATCAGCATGT 58.492 39.130 0.00 0.00 38.33 3.21
2222 4736 4.567959 CGATTGTACTTGATCAGCATGTCA 59.432 41.667 0.00 0.00 36.42 3.58
2223 4737 5.235831 CGATTGTACTTGATCAGCATGTCAT 59.764 40.000 0.00 0.00 36.42 3.06
2224 4738 6.421801 CGATTGTACTTGATCAGCATGTCATA 59.578 38.462 0.00 0.00 36.42 2.15
2225 4739 7.117379 CGATTGTACTTGATCAGCATGTCATAT 59.883 37.037 0.00 0.00 36.42 1.78
2226 4740 8.687292 ATTGTACTTGATCAGCATGTCATATT 57.313 30.769 0.00 0.00 36.42 1.28
2227 4741 9.783081 ATTGTACTTGATCAGCATGTCATATTA 57.217 29.630 0.00 0.00 36.42 0.98
2228 4742 9.783081 TTGTACTTGATCAGCATGTCATATTAT 57.217 29.630 0.00 0.00 36.42 1.28
2229 4743 9.428097 TGTACTTGATCAGCATGTCATATTATC 57.572 33.333 0.00 0.00 36.42 1.75
2232 4746 9.516546 ACTTGATCAGCATGTCATATTATCATT 57.483 29.630 0.00 0.00 37.40 2.57
2234 4748 9.509956 TTGATCAGCATGTCATATTATCATTGA 57.490 29.630 0.00 0.00 37.40 2.57
2235 4749 9.509956 TGATCAGCATGTCATATTATCATTGAA 57.490 29.630 0.00 0.00 37.40 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.245948 CTGCTTGACACGTGGCTGC 62.246 63.158 24.38 25.09 0.00 5.25
13 14 1.563435 CTCTGCTTGACACGTGGCTG 61.563 60.000 24.38 17.49 0.00 4.85
14 15 1.301244 CTCTGCTTGACACGTGGCT 60.301 57.895 24.38 0.00 0.00 4.75
29 30 2.565645 AACGTGCGAGCAGGACTCT 61.566 57.895 22.21 0.00 43.85 3.24
31 32 2.356313 CAACGTGCGAGCAGGACT 60.356 61.111 22.21 7.80 39.22 3.85
73 74 0.321653 CTAGGTTGCGGCAAAGACCT 60.322 55.000 23.89 23.89 44.35 3.85
77 78 1.084289 GTACCTAGGTTGCGGCAAAG 58.916 55.000 22.11 11.29 0.00 2.77
80 81 0.901114 TCTGTACCTAGGTTGCGGCA 60.901 55.000 22.11 10.61 0.00 5.69
89 90 2.099263 CACGGTGGTCATCTGTACCTAG 59.901 54.545 0.00 0.00 37.91 3.02
316 320 0.955752 ATTCAGGAGAGGGGGAGGAT 59.044 55.000 0.00 0.00 0.00 3.24
380 392 1.519234 GGAGATCGATGCGTGCACA 60.519 57.895 18.64 0.00 0.00 4.57
659 671 1.652012 CCGGCATTGACGTTGTTGT 59.348 52.632 11.60 0.00 28.54 3.32
661 673 2.265182 CCCCGGCATTGACGTTGTT 61.265 57.895 11.60 0.00 28.54 2.83
665 680 4.404098 GGTCCCCGGCATTGACGT 62.404 66.667 11.60 0.00 28.54 4.34
773 788 1.076533 GATGGCGAATGTGACGTCGT 61.077 55.000 11.62 0.00 39.46 4.34
774 789 1.631072 GATGGCGAATGTGACGTCG 59.369 57.895 11.62 4.36 38.23 5.12
873 888 3.723348 GCGAACTGGAACACGCCC 61.723 66.667 0.00 0.00 43.87 6.13
984 999 4.212913 ATCACGATCGCCGCAGCT 62.213 61.111 16.60 0.00 43.32 4.24
985 1000 3.993234 CATCACGATCGCCGCAGC 61.993 66.667 16.60 0.00 43.32 5.25
1143 1158 2.997315 TCCACCAGCCTGTCCTCG 60.997 66.667 0.00 0.00 0.00 4.63
1149 1164 1.002868 CACCTTCTCCACCAGCCTG 60.003 63.158 0.00 0.00 0.00 4.85
1171 1186 1.203001 ACAATCCAACAACACCCCGAT 60.203 47.619 0.00 0.00 0.00 4.18
1211 1226 0.531532 CTGCAAGTATCTGAGCCCCG 60.532 60.000 0.00 0.00 0.00 5.73
1218 1233 4.197750 AGAGGAAATGCTGCAAGTATCTG 58.802 43.478 6.36 0.00 38.77 2.90
1263 1304 2.352715 GCTAAAACAGAACCATGGCCAC 60.353 50.000 8.16 3.29 0.00 5.01
1275 1757 7.426456 CGTATGCAAACAGATAAGCTAAAACAG 59.574 37.037 0.00 0.00 0.00 3.16
1293 1775 1.934525 ACAACACGAACACGTATGCAA 59.065 42.857 0.00 0.00 38.51 4.08
1374 3351 6.388619 ACAATTGGTGAAGATACTACCCTT 57.611 37.500 10.83 0.00 33.51 3.95
1390 3512 6.258230 TCAAGCATTCTTAGACACAATTGG 57.742 37.500 10.83 1.35 0.00 3.16
1391 3513 8.024865 TGAATCAAGCATTCTTAGACACAATTG 58.975 33.333 3.24 3.24 41.58 2.32
1426 3548 8.698973 TCCATTATTATCCGCATAAAAAGGAA 57.301 30.769 0.00 0.00 37.62 3.36
1433 3555 5.804639 ACTGCTCCATTATTATCCGCATAA 58.195 37.500 0.00 0.00 0.00 1.90
1435 3557 4.019860 AGACTGCTCCATTATTATCCGCAT 60.020 41.667 0.00 0.00 0.00 4.73
1470 3596 4.363546 AAGGGGAAACTCTACCTATGGA 57.636 45.455 0.00 0.00 44.11 3.41
1471 3597 5.193679 CAAAAGGGGAAACTCTACCTATGG 58.806 45.833 0.00 0.00 44.11 2.74
1490 3616 7.033530 ACTTGTTTCGATATGTTGTCCAAAA 57.966 32.000 0.00 0.00 0.00 2.44
1491 3617 6.565060 CGACTTGTTTCGATATGTTGTCCAAA 60.565 38.462 0.00 0.00 41.78 3.28
1492 3618 5.107259 CGACTTGTTTCGATATGTTGTCCAA 60.107 40.000 0.00 0.00 41.78 3.53
1493 3619 4.387559 CGACTTGTTTCGATATGTTGTCCA 59.612 41.667 0.00 0.00 41.78 4.02
1497 3623 5.497126 CGTCTCGACTTGTTTCGATATGTTG 60.497 44.000 0.00 0.00 46.53 3.33
1500 3626 3.482472 CCGTCTCGACTTGTTTCGATATG 59.518 47.826 0.00 0.00 46.53 1.78
1502 3628 2.485426 ACCGTCTCGACTTGTTTCGATA 59.515 45.455 0.00 0.00 46.53 2.92
1503 3629 1.268899 ACCGTCTCGACTTGTTTCGAT 59.731 47.619 0.00 0.00 46.53 3.59
1505 3631 1.050767 GACCGTCTCGACTTGTTTCG 58.949 55.000 0.00 0.00 40.53 3.46
1506 3632 2.129823 TGACCGTCTCGACTTGTTTC 57.870 50.000 0.00 0.00 0.00 2.78
1507 3633 2.589798 TTGACCGTCTCGACTTGTTT 57.410 45.000 0.00 0.00 0.00 2.83
1509 3635 2.035449 TGATTTGACCGTCTCGACTTGT 59.965 45.455 0.00 0.00 0.00 3.16
1739 3939 3.454375 CTTCTTTGGATGATTGCATGGC 58.546 45.455 0.00 0.00 34.11 4.40
1761 3961 5.689514 TGTTTTGCGAACCATCTTTGTTATG 59.310 36.000 0.00 0.00 0.00 1.90
1795 3995 3.806949 AACTGCAAAGACCCTTCCATA 57.193 42.857 0.00 0.00 0.00 2.74
1797 3997 2.430332 CAAAACTGCAAAGACCCTTCCA 59.570 45.455 0.00 0.00 0.00 3.53
1798 3998 2.224042 CCAAAACTGCAAAGACCCTTCC 60.224 50.000 0.00 0.00 0.00 3.46
1803 4003 2.922335 GCGATCCAAAACTGCAAAGACC 60.922 50.000 0.00 0.00 0.00 3.85
1806 4006 1.330306 CGCGATCCAAAACTGCAAAG 58.670 50.000 0.00 0.00 0.00 2.77
1814 4014 0.886938 TGTGCTTCCGCGATCCAAAA 60.887 50.000 8.23 0.00 39.65 2.44
1827 4027 6.006449 AGATCAAGTTAAATGGTCTGTGCTT 58.994 36.000 4.85 0.00 36.90 3.91
1828 4028 5.564550 AGATCAAGTTAAATGGTCTGTGCT 58.435 37.500 4.85 0.00 36.90 4.40
1862 4062 0.392461 GCAGAACCATGGAAGGCGTA 60.392 55.000 21.47 0.00 0.00 4.42
1866 4066 3.648067 TCTATAGGCAGAACCATGGAAGG 59.352 47.826 21.47 5.92 43.14 3.46
1873 4073 8.736097 TTTATTATCCTCTATAGGCAGAACCA 57.264 34.615 0.00 0.00 43.31 3.67
1875 4075 9.998106 TGTTTTATTATCCTCTATAGGCAGAAC 57.002 33.333 0.00 0.00 43.31 3.01
1939 4143 7.373778 ACCGGAATTCACTCTTATTTGTTAC 57.626 36.000 9.46 0.00 0.00 2.50
1940 4144 7.989416 AACCGGAATTCACTCTTATTTGTTA 57.011 32.000 9.46 0.00 0.00 2.41
1943 4147 9.855021 ATAAAAACCGGAATTCACTCTTATTTG 57.145 29.630 9.46 0.00 0.00 2.32
1947 4151 6.600427 GGGATAAAAACCGGAATTCACTCTTA 59.400 38.462 9.46 0.00 0.00 2.10
1948 4152 5.417894 GGGATAAAAACCGGAATTCACTCTT 59.582 40.000 9.46 0.00 0.00 2.85
1949 4153 4.948004 GGGATAAAAACCGGAATTCACTCT 59.052 41.667 9.46 0.00 0.00 3.24
1950 4154 4.097437 GGGGATAAAAACCGGAATTCACTC 59.903 45.833 9.46 0.00 0.00 3.51
1951 4155 4.021229 GGGGATAAAAACCGGAATTCACT 58.979 43.478 9.46 0.00 0.00 3.41
1953 4157 4.325084 AGGGGATAAAAACCGGAATTCA 57.675 40.909 9.46 0.00 0.00 2.57
1954 4158 6.971726 AATAGGGGATAAAAACCGGAATTC 57.028 37.500 9.46 0.00 0.00 2.17
1955 4159 7.400627 TCAAAATAGGGGATAAAAACCGGAATT 59.599 33.333 9.46 0.00 0.00 2.17
1957 4161 6.153170 GTCAAAATAGGGGATAAAAACCGGAA 59.847 38.462 9.46 0.00 0.00 4.30
1958 4162 5.653330 GTCAAAATAGGGGATAAAAACCGGA 59.347 40.000 9.46 0.00 0.00 5.14
1959 4163 5.655090 AGTCAAAATAGGGGATAAAAACCGG 59.345 40.000 0.00 0.00 0.00 5.28
1960 4164 6.769134 AGTCAAAATAGGGGATAAAAACCG 57.231 37.500 0.00 0.00 0.00 4.44
1961 4165 9.787435 AAAAAGTCAAAATAGGGGATAAAAACC 57.213 29.630 0.00 0.00 0.00 3.27
1984 4188 8.308207 GCTAAATGGGGTAATTAGTGTCAAAAA 58.692 33.333 0.00 0.00 0.00 1.94
1985 4189 7.362229 CGCTAAATGGGGTAATTAGTGTCAAAA 60.362 37.037 0.00 0.00 34.21 2.44
1986 4190 6.094325 CGCTAAATGGGGTAATTAGTGTCAAA 59.906 38.462 0.00 0.00 34.21 2.69
1988 4192 5.120399 CGCTAAATGGGGTAATTAGTGTCA 58.880 41.667 0.00 0.00 34.21 3.58
1989 4193 4.514066 CCGCTAAATGGGGTAATTAGTGTC 59.486 45.833 0.00 0.00 43.08 3.67
1990 4194 4.457466 CCGCTAAATGGGGTAATTAGTGT 58.543 43.478 0.00 0.00 43.08 3.55
1991 4195 3.818773 CCCGCTAAATGGGGTAATTAGTG 59.181 47.826 0.00 0.00 46.22 2.74
2013 4217 8.470002 GCTAAATGGGGTATAATGGATGAAATC 58.530 37.037 0.00 0.00 44.55 2.17
2015 4219 7.232534 GTGCTAAATGGGGTATAATGGATGAAA 59.767 37.037 0.00 0.00 0.00 2.69
2016 4220 6.719370 GTGCTAAATGGGGTATAATGGATGAA 59.281 38.462 0.00 0.00 0.00 2.57
2017 4221 6.183361 TGTGCTAAATGGGGTATAATGGATGA 60.183 38.462 0.00 0.00 0.00 2.92
2018 4222 6.009589 TGTGCTAAATGGGGTATAATGGATG 58.990 40.000 0.00 0.00 0.00 3.51
2020 4224 5.654901 TGTGCTAAATGGGGTATAATGGA 57.345 39.130 0.00 0.00 0.00 3.41
2021 4225 5.833131 ACTTGTGCTAAATGGGGTATAATGG 59.167 40.000 0.00 0.00 0.00 3.16
2022 4226 6.321181 ACACTTGTGCTAAATGGGGTATAATG 59.679 38.462 0.10 0.00 0.00 1.90
2024 4228 5.822204 ACACTTGTGCTAAATGGGGTATAA 58.178 37.500 0.10 0.00 0.00 0.98
2025 4229 5.444744 ACACTTGTGCTAAATGGGGTATA 57.555 39.130 0.10 0.00 0.00 1.47
2027 4231 3.799432 ACACTTGTGCTAAATGGGGTA 57.201 42.857 0.10 0.00 0.00 3.69
2028 4232 2.627699 CAACACTTGTGCTAAATGGGGT 59.372 45.455 0.10 0.00 0.00 4.95
2029 4233 2.610232 GCAACACTTGTGCTAAATGGGG 60.610 50.000 0.10 0.00 0.00 4.96
2030 4234 2.610232 GGCAACACTTGTGCTAAATGGG 60.610 50.000 0.10 0.00 0.00 4.00
2031 4235 2.035704 TGGCAACACTTGTGCTAAATGG 59.964 45.455 0.10 0.00 46.17 3.16
2032 4236 3.367992 TGGCAACACTTGTGCTAAATG 57.632 42.857 0.10 0.00 46.17 2.32
2046 4250 8.825667 TTTAAAAGAGGATAAATTGTGGCAAC 57.174 30.769 0.00 0.00 0.00 4.17
2056 4260 9.332301 CGCACGTAAAATTTAAAAGAGGATAAA 57.668 29.630 0.00 0.00 0.00 1.40
2057 4261 8.505625 ACGCACGTAAAATTTAAAAGAGGATAA 58.494 29.630 0.00 0.00 0.00 1.75
2059 4263 6.905578 ACGCACGTAAAATTTAAAAGAGGAT 58.094 32.000 0.00 0.00 0.00 3.24
2060 4264 6.303021 ACGCACGTAAAATTTAAAAGAGGA 57.697 33.333 0.00 0.00 0.00 3.71
2061 4265 6.979701 AACGCACGTAAAATTTAAAAGAGG 57.020 33.333 0.00 0.00 0.00 3.69
2062 4266 8.525071 TCAAAACGCACGTAAAATTTAAAAGAG 58.475 29.630 0.00 0.00 0.00 2.85
2067 4581 6.264088 AGGTCAAAACGCACGTAAAATTTAA 58.736 32.000 0.00 0.00 0.00 1.52
2074 4588 1.786004 CGTAGGTCAAAACGCACGTAA 59.214 47.619 0.00 0.00 32.02 3.18
2076 4590 2.218934 CGTAGGTCAAAACGCACGT 58.781 52.632 0.00 0.00 32.02 4.49
2090 4604 4.766375 ACCTGACAAATTATGACCCGTAG 58.234 43.478 0.00 0.00 0.00 3.51
2091 4605 4.468510 AGACCTGACAAATTATGACCCGTA 59.531 41.667 0.00 0.00 0.00 4.02
2092 4606 3.263425 AGACCTGACAAATTATGACCCGT 59.737 43.478 0.00 0.00 0.00 5.28
2093 4607 3.873910 AGACCTGACAAATTATGACCCG 58.126 45.455 0.00 0.00 0.00 5.28
2094 4608 4.816925 GCTAGACCTGACAAATTATGACCC 59.183 45.833 0.00 0.00 0.00 4.46
2096 4610 6.341316 TCAGCTAGACCTGACAAATTATGAC 58.659 40.000 0.00 0.00 36.96 3.06
2112 4626 0.173481 GACGTGGCATGTCAGCTAGA 59.827 55.000 29.93 0.00 34.36 2.43
2113 4627 0.108662 TGACGTGGCATGTCAGCTAG 60.109 55.000 32.79 0.00 39.05 3.42
2114 4628 0.320050 TTGACGTGGCATGTCAGCTA 59.680 50.000 33.68 21.70 44.09 3.32
2116 4630 1.207593 GTTGACGTGGCATGTCAGC 59.792 57.895 33.68 32.59 44.09 4.26
2119 4633 2.677003 CCCGTTGACGTGGCATGTC 61.677 63.158 28.64 28.64 37.74 3.06
2120 4634 2.668212 CCCGTTGACGTGGCATGT 60.668 61.111 13.11 13.11 37.74 3.21
2121 4635 1.791103 AAACCCGTTGACGTGGCATG 61.791 55.000 4.87 4.87 37.74 4.06
2123 4637 1.313812 AAAAACCCGTTGACGTGGCA 61.314 50.000 0.00 0.00 37.74 4.92
2124 4638 1.434287 AAAAACCCGTTGACGTGGC 59.566 52.632 0.00 0.00 37.74 5.01
2142 4656 9.939802 GTTTAGTAGGGAGAAAAATAGACAGAA 57.060 33.333 0.00 0.00 0.00 3.02
2144 4658 9.589111 GAGTTTAGTAGGGAGAAAAATAGACAG 57.411 37.037 0.00 0.00 0.00 3.51
2145 4659 9.096823 TGAGTTTAGTAGGGAGAAAAATAGACA 57.903 33.333 0.00 0.00 0.00 3.41
2153 4667 6.403878 CGGAAATGAGTTTAGTAGGGAGAAA 58.596 40.000 0.00 0.00 0.00 2.52
2156 4670 4.161754 ACCGGAAATGAGTTTAGTAGGGAG 59.838 45.833 9.46 0.00 0.00 4.30
2157 4671 4.098894 ACCGGAAATGAGTTTAGTAGGGA 58.901 43.478 9.46 0.00 0.00 4.20
2158 4672 4.482952 ACCGGAAATGAGTTTAGTAGGG 57.517 45.455 9.46 0.00 0.00 3.53
2159 4673 5.935789 TCAAACCGGAAATGAGTTTAGTAGG 59.064 40.000 9.46 0.00 32.64 3.18
2160 4674 7.172703 ACTTCAAACCGGAAATGAGTTTAGTAG 59.827 37.037 9.46 4.43 32.64 2.57
2161 4675 6.993902 ACTTCAAACCGGAAATGAGTTTAGTA 59.006 34.615 9.46 0.00 32.64 1.82
2163 4677 6.313744 ACTTCAAACCGGAAATGAGTTTAG 57.686 37.500 9.46 6.16 32.64 1.85
2165 4679 6.894339 ATACTTCAAACCGGAAATGAGTTT 57.106 33.333 9.46 0.00 34.13 2.66
2170 4684 6.494893 TCAGAATACTTCAAACCGGAAATG 57.505 37.500 9.46 3.70 0.00 2.32
2171 4685 6.095440 CCATCAGAATACTTCAAACCGGAAAT 59.905 38.462 9.46 0.00 0.00 2.17
2172 4686 5.414454 CCATCAGAATACTTCAAACCGGAAA 59.586 40.000 9.46 0.00 0.00 3.13
2173 4687 4.941263 CCATCAGAATACTTCAAACCGGAA 59.059 41.667 9.46 0.00 0.00 4.30
2174 4688 4.513442 CCATCAGAATACTTCAAACCGGA 58.487 43.478 9.46 0.00 0.00 5.14
2175 4689 3.627577 CCCATCAGAATACTTCAAACCGG 59.372 47.826 0.00 0.00 0.00 5.28
2177 4691 4.332819 CGTCCCATCAGAATACTTCAAACC 59.667 45.833 0.00 0.00 0.00 3.27
2179 4693 5.414789 TCGTCCCATCAGAATACTTCAAA 57.585 39.130 0.00 0.00 0.00 2.69
2180 4694 5.614324 ATCGTCCCATCAGAATACTTCAA 57.386 39.130 0.00 0.00 0.00 2.69
2181 4695 5.104941 ACAATCGTCCCATCAGAATACTTCA 60.105 40.000 0.00 0.00 0.00 3.02
2182 4696 5.360591 ACAATCGTCCCATCAGAATACTTC 58.639 41.667 0.00 0.00 0.00 3.01
2183 4697 5.359194 ACAATCGTCCCATCAGAATACTT 57.641 39.130 0.00 0.00 0.00 2.24
2184 4698 5.598830 AGTACAATCGTCCCATCAGAATACT 59.401 40.000 0.00 0.00 0.00 2.12
2185 4699 5.844004 AGTACAATCGTCCCATCAGAATAC 58.156 41.667 0.00 0.00 0.00 1.89
2186 4700 6.097696 TCAAGTACAATCGTCCCATCAGAATA 59.902 38.462 0.00 0.00 0.00 1.75
2188 4702 4.221924 TCAAGTACAATCGTCCCATCAGAA 59.778 41.667 0.00 0.00 0.00 3.02
2189 4703 3.767131 TCAAGTACAATCGTCCCATCAGA 59.233 43.478 0.00 0.00 0.00 3.27
2190 4704 4.123497 TCAAGTACAATCGTCCCATCAG 57.877 45.455 0.00 0.00 0.00 2.90
2191 4705 4.161377 TGATCAAGTACAATCGTCCCATCA 59.839 41.667 0.00 0.00 0.00 3.07
2193 4707 4.697514 CTGATCAAGTACAATCGTCCCAT 58.302 43.478 0.00 0.00 0.00 4.00
2195 4709 2.866762 GCTGATCAAGTACAATCGTCCC 59.133 50.000 0.00 0.00 0.00 4.46
2196 4710 3.521560 TGCTGATCAAGTACAATCGTCC 58.478 45.455 0.00 0.00 0.00 4.79
2197 4711 4.568359 ACATGCTGATCAAGTACAATCGTC 59.432 41.667 0.00 0.00 0.00 4.20
2198 4712 4.507710 ACATGCTGATCAAGTACAATCGT 58.492 39.130 0.00 0.00 0.00 3.73
2199 4713 4.567959 TGACATGCTGATCAAGTACAATCG 59.432 41.667 0.00 0.00 0.00 3.34
2201 4715 8.687292 AATATGACATGCTGATCAAGTACAAT 57.313 30.769 0.00 0.00 0.00 2.71
2202 4716 9.783081 ATAATATGACATGCTGATCAAGTACAA 57.217 29.630 0.00 0.00 0.00 2.41
2203 4717 9.428097 GATAATATGACATGCTGATCAAGTACA 57.572 33.333 0.00 0.00 0.00 2.90
2204 4718 9.428097 TGATAATATGACATGCTGATCAAGTAC 57.572 33.333 0.00 0.00 0.00 2.73
2206 4720 9.516546 AATGATAATATGACATGCTGATCAAGT 57.483 29.630 0.00 0.00 0.00 3.16
2208 4722 9.509956 TCAATGATAATATGACATGCTGATCAA 57.490 29.630 0.00 0.00 0.00 2.57
2209 4723 9.509956 TTCAATGATAATATGACATGCTGATCA 57.490 29.630 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.