Multiple sequence alignment - TraesCS3A01G329700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G329700 chr3A 100.000 6086 0 0 1 6086 574512890 574518975 0.000000e+00 11239.0
1 TraesCS3A01G329700 chr3D 89.062 1664 115 29 3823 5439 435705875 435707518 0.000000e+00 2002.0
2 TraesCS3A01G329700 chr3D 92.336 548 27 2 2360 2894 435703953 435704498 0.000000e+00 765.0
3 TraesCS3A01G329700 chr3D 91.132 530 27 5 2913 3441 435704667 435705177 0.000000e+00 701.0
4 TraesCS3A01G329700 chr3D 84.125 737 73 26 1 719 435701365 435702075 0.000000e+00 673.0
5 TraesCS3A01G329700 chr3D 84.754 610 22 28 736 1316 435702326 435702893 4.150000e-151 545.0
6 TraesCS3A01G329700 chr3D 90.049 412 39 1 5673 6084 435711346 435711755 3.230000e-147 532.0
7 TraesCS3A01G329700 chr3D 92.373 354 20 3 3438 3790 435705527 435705874 1.180000e-136 497.0
8 TraesCS3A01G329700 chr3D 91.667 360 23 4 1361 1719 435702905 435703258 5.480000e-135 492.0
9 TraesCS3A01G329700 chr3D 91.507 365 19 5 1720 2083 435703449 435703802 5.480000e-135 492.0
10 TraesCS3A01G329700 chr3D 86.093 151 14 5 2136 2284 435703808 435703953 8.170000e-34 156.0
11 TraesCS3A01G329700 chr3B 87.327 1444 140 30 3823 5246 571799719 571801139 0.000000e+00 1613.0
12 TraesCS3A01G329700 chr3B 85.028 1082 75 45 708 1733 571796884 571797934 0.000000e+00 1020.0
13 TraesCS3A01G329700 chr3B 91.310 725 46 9 1 719 571795960 571796673 0.000000e+00 974.0
14 TraesCS3A01G329700 chr3B 90.377 530 36 7 2360 2880 571798416 571798939 0.000000e+00 682.0
15 TraesCS3A01G329700 chr3B 84.038 520 63 14 3271 3790 571799219 571799718 3.300000e-132 483.0
16 TraesCS3A01G329700 chr3B 88.235 289 21 8 1838 2124 571797997 571798274 3.520000e-87 333.0
17 TraesCS3A01G329700 chr3B 91.200 125 11 0 3017 3141 571799013 571799137 2.920000e-38 171.0
18 TraesCS3A01G329700 chr5D 85.801 331 37 6 5269 5595 537686746 537686422 5.840000e-90 342.0
19 TraesCS3A01G329700 chr5D 82.239 259 35 6 5269 5524 5549382 5549632 4.780000e-51 213.0
20 TraesCS3A01G329700 chr2A 87.547 265 32 1 5271 5534 709770034 709770298 7.660000e-79 305.0
21 TraesCS3A01G329700 chr2A 82.264 265 46 1 5269 5532 420216701 420216965 1.710000e-55 228.0
22 TraesCS3A01G329700 chr1B 86.567 268 34 2 5269 5534 388768470 388768203 1.660000e-75 294.0
23 TraesCS3A01G329700 chr2D 86.466 266 34 2 5271 5534 571053521 571053786 2.150000e-74 291.0
24 TraesCS3A01G329700 chr1D 88.312 231 25 2 5306 5534 286384233 286384003 6.010000e-70 276.0
25 TraesCS3A01G329700 chr1A 84.328 268 37 5 5269 5534 357775768 357775504 2.180000e-64 257.0
26 TraesCS3A01G329700 chr7A 88.636 44 5 0 5269 5312 179904637 179904594 3.000000e-03 54.7
27 TraesCS3A01G329700 chr6A 100.000 29 0 0 2331 2359 405656149 405656177 3.000000e-03 54.7
28 TraesCS3A01G329700 chr6D 100.000 28 0 0 2288 2315 446860737 446860710 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G329700 chr3A 574512890 574518975 6085 False 11239.000000 11239 100.000000 1 6086 1 chr3A.!!$F1 6085
1 TraesCS3A01G329700 chr3D 435701365 435711755 10390 False 685.500000 2002 89.309800 1 6084 10 chr3D.!!$F1 6083
2 TraesCS3A01G329700 chr3B 571795960 571801139 5179 False 753.714286 1613 88.216429 1 5246 7 chr3B.!!$F1 5245

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 404 0.040058 TCTGATTGCCATTGCCCTGT 59.960 50.0 0.0 0.00 36.33 4.00 F
1674 1985 0.108329 GCCTTTCGCCTGCACTACTA 60.108 55.0 0.0 0.00 0.00 1.82 F
1968 2470 0.037697 TACACGGTCCAGTCATGTGC 60.038 55.0 0.0 0.00 33.96 4.57 F
3214 3887 0.318445 GAAGGCAAAGCAGTGCAGTG 60.318 55.0 19.2 17.56 46.81 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 2392 0.107361 CTTAACGGAGGGCGGGAAAT 60.107 55.000 0.00 0.00 0.00 2.17 R
3358 4031 0.468226 TTCCCCATGTCGCCATAGAC 59.532 55.000 0.00 0.00 41.30 2.59 R
3760 4787 1.153086 GAGGCTGATTGGCGGTGAT 60.153 57.895 0.00 0.00 46.88 3.06 R
5180 6243 0.512518 TGCAATTCAGCGTTCGTCTG 59.487 50.000 9.18 9.18 37.31 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.008933 GGTGTCAGGTCAGCGGCT 62.009 66.667 0.00 0.00 0.00 5.52
116 117 9.569167 GCCCTAAGTGTTTCAAATAAATTCTAC 57.431 33.333 0.00 0.00 0.00 2.59
191 192 0.597568 TGGCAGGTGAAATCTTTGCG 59.402 50.000 0.00 0.00 35.68 4.85
201 202 2.919666 AATCTTTGCGGTGCATACAC 57.080 45.000 0.00 0.00 46.66 2.90
232 237 1.217882 GGTTCGTCCTGTCACAACTG 58.782 55.000 0.00 0.00 0.00 3.16
286 291 4.072131 TGTGCTCTGATGTAAAAAGACCC 58.928 43.478 0.00 0.00 0.00 4.46
329 334 3.703052 GCTGGGATCATGGAACTGATTTT 59.297 43.478 0.00 0.00 36.01 1.82
346 355 7.710896 ACTGATTTTCTGTGAAAAAGAAGAGG 58.289 34.615 9.13 1.06 42.14 3.69
384 401 1.188863 ACTTCTGATTGCCATTGCCC 58.811 50.000 0.00 0.00 36.33 5.36
387 404 0.040058 TCTGATTGCCATTGCCCTGT 59.960 50.000 0.00 0.00 36.33 4.00
486 506 8.464404 TGTTTACCTCATAGTACACACATAGAC 58.536 37.037 0.00 0.00 30.09 2.59
488 508 6.452494 ACCTCATAGTACACACATAGACAC 57.548 41.667 0.00 0.00 0.00 3.67
523 543 1.677966 TGACGCCCTAGTCTTCGCT 60.678 57.895 0.00 0.00 41.47 4.93
529 549 2.492090 CTAGTCTTCGCTGCGGCT 59.508 61.111 23.03 16.36 36.09 5.52
588 608 0.714439 GGAAGACGTTGACGCTAAGC 59.286 55.000 3.05 0.00 44.43 3.09
631 652 2.335712 GCCGCCTGAAAGTTCCCAG 61.336 63.158 0.00 0.00 0.00 4.45
639 660 0.804989 GAAAGTTCCCAGCATCACCG 59.195 55.000 0.00 0.00 0.00 4.94
673 694 1.137086 CTGTGCTACTGGCCGAAGTAT 59.863 52.381 3.54 0.00 40.92 2.12
674 695 1.553248 TGTGCTACTGGCCGAAGTATT 59.447 47.619 3.54 0.00 40.92 1.89
675 696 2.027561 TGTGCTACTGGCCGAAGTATTT 60.028 45.455 3.54 0.00 40.92 1.40
692 713 7.518052 CGAAGTATTTTCTTGGAGATCATCAGC 60.518 40.741 0.00 0.00 0.00 4.26
760 1015 1.549037 CCGCTATAGCTTCCTCCTCCT 60.549 57.143 21.98 0.00 39.32 3.69
761 1016 1.816224 CGCTATAGCTTCCTCCTCCTC 59.184 57.143 21.98 0.00 39.32 3.71
764 1019 0.178947 ATAGCTTCCTCCTCCTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
765 1020 2.930777 TAGCTTCCTCCTCCTCCCGC 62.931 65.000 0.00 0.00 0.00 6.13
766 1021 3.157949 CTTCCTCCTCCTCCCGCC 61.158 72.222 0.00 0.00 0.00 6.13
767 1022 4.798682 TTCCTCCTCCTCCCGCCC 62.799 72.222 0.00 0.00 0.00 6.13
841 1096 2.430382 TTCGTTCTCGTCCCCACAGC 62.430 60.000 0.00 0.00 38.33 4.40
850 1105 4.988598 CCCCACAGCGCTCGTGTT 62.989 66.667 26.88 0.00 32.26 3.32
851 1106 3.716006 CCCACAGCGCTCGTGTTG 61.716 66.667 26.88 18.47 32.26 3.33
852 1107 3.716006 CCACAGCGCTCGTGTTGG 61.716 66.667 26.88 17.16 32.26 3.77
853 1108 2.967076 CACAGCGCTCGTGTTGGT 60.967 61.111 23.38 9.58 0.00 3.67
857 1140 3.269347 GCGCTCGTGTTGGTGTGT 61.269 61.111 0.00 0.00 0.00 3.72
866 1149 0.692756 TGTTGGTGTGTCCTCCTCCA 60.693 55.000 0.00 0.00 37.07 3.86
881 1164 2.043046 CCATTCCCCACCGCCATT 60.043 61.111 0.00 0.00 0.00 3.16
958 1244 3.344515 AGCGTATCACTCACTCACTGTA 58.655 45.455 0.00 0.00 0.00 2.74
1016 1307 2.089854 CGATGGGTTTCGCTCCTTG 58.910 57.895 0.00 0.00 31.60 3.61
1038 1329 1.600916 GCGTGCTGGTTTCCTCCTT 60.601 57.895 0.00 0.00 0.00 3.36
1056 1347 1.758440 TTGTGCTTCTCGGCCTCTGT 61.758 55.000 0.00 0.00 0.00 3.41
1202 1502 2.930040 CGTACCTGTCCATCAATGTCAC 59.070 50.000 0.00 0.00 0.00 3.67
1316 1616 1.439679 CCTTCAAACTCCAGGTACGC 58.560 55.000 0.00 0.00 0.00 4.42
1319 1619 0.319211 TCAAACTCCAGGTACGCACG 60.319 55.000 0.00 0.00 0.00 5.34
1320 1620 1.666872 AAACTCCAGGTACGCACGC 60.667 57.895 0.00 0.00 0.00 5.34
1327 1631 1.663702 AGGTACGCACGCACAACTC 60.664 57.895 0.00 0.00 0.00 3.01
1330 1634 0.982673 GTACGCACGCACAACTCTAG 59.017 55.000 0.00 0.00 0.00 2.43
1332 1636 0.387367 ACGCACGCACAACTCTAGAG 60.387 55.000 18.49 18.49 0.00 2.43
1335 1639 1.989165 GCACGCACAACTCTAGAGAAG 59.011 52.381 26.57 18.50 0.00 2.85
1360 1664 4.590850 GGAACATTCCTCTGCTGTTTTT 57.409 40.909 3.24 0.00 44.11 1.94
1408 1712 5.476599 TGTGATGTTTTGGTTTATCCTCCTG 59.523 40.000 0.00 0.00 37.07 3.86
1424 1728 3.326006 CCTCCTGCATATCTAAGCTTGGA 59.674 47.826 15.43 15.43 34.68 3.53
1590 1898 1.324736 CTGAGCGGCGTGAACTATTTC 59.675 52.381 9.37 0.00 0.00 2.17
1664 1975 0.673985 AGAACCTTTTGCCTTTCGCC 59.326 50.000 0.00 0.00 36.24 5.54
1674 1985 0.108329 GCCTTTCGCCTGCACTACTA 60.108 55.000 0.00 0.00 0.00 1.82
1679 1990 1.227089 CGCCTGCACTACTAGCCAG 60.227 63.158 0.00 0.00 0.00 4.85
1734 2236 6.320164 AGAATCTAGTAGTAGTTGCCACAGAG 59.680 42.308 4.51 0.00 0.00 3.35
1826 2328 5.289434 CGTACATGCATGCACTCGATATATT 59.711 40.000 25.37 0.00 0.00 1.28
1889 2391 4.041075 TCCTGTACACCATTGCTCAAGTTA 59.959 41.667 0.00 0.00 0.00 2.24
1890 2392 4.759693 CCTGTACACCATTGCTCAAGTTAA 59.240 41.667 0.00 0.00 0.00 2.01
1891 2393 5.415701 CCTGTACACCATTGCTCAAGTTAAT 59.584 40.000 0.00 0.00 0.00 1.40
1904 2406 0.107361 AGTTAATTTCCCGCCCTCCG 60.107 55.000 0.00 0.00 0.00 4.63
1927 2429 5.961263 CGTTAAGAGGTTGTTGTGTTTACAC 59.039 40.000 6.07 6.07 46.59 2.90
1951 2453 3.458189 AGGCAGTGCTATGATTCGTTAC 58.542 45.455 16.11 0.00 0.00 2.50
1952 2454 3.118775 AGGCAGTGCTATGATTCGTTACA 60.119 43.478 16.11 0.00 0.00 2.41
1967 2469 2.066262 GTTACACGGTCCAGTCATGTG 58.934 52.381 0.00 0.00 36.64 3.21
1968 2470 0.037697 TACACGGTCCAGTCATGTGC 60.038 55.000 0.00 0.00 33.96 4.57
1969 2471 2.048222 ACGGTCCAGTCATGTGCG 60.048 61.111 0.00 0.00 0.00 5.34
1970 2472 2.048222 CGGTCCAGTCATGTGCGT 60.048 61.111 0.00 0.00 0.00 5.24
1971 2473 1.214325 CGGTCCAGTCATGTGCGTA 59.786 57.895 0.00 0.00 0.00 4.42
1989 2491 1.996786 TACGTTAGCCTCGCCGGAAG 61.997 60.000 5.05 0.33 33.16 3.46
2011 2513 1.731700 CCATCCTTGAAGCATGCCG 59.268 57.895 15.66 0.00 0.00 5.69
2097 2600 0.866427 GCATGGATGAGAGCATGACG 59.134 55.000 0.00 0.00 34.11 4.35
2111 2614 2.350772 GCATGACGTGAACCTCCTTTTG 60.351 50.000 0.00 0.00 0.00 2.44
2127 2630 4.368315 CCTTTTGGAAAGAGAAAAACCGG 58.632 43.478 0.00 0.00 44.07 5.28
2128 2631 4.098807 CCTTTTGGAAAGAGAAAAACCGGA 59.901 41.667 9.46 0.00 44.07 5.14
2129 2632 5.221441 CCTTTTGGAAAGAGAAAAACCGGAT 60.221 40.000 9.46 0.00 44.07 4.18
2130 2633 5.447624 TTTGGAAAGAGAAAAACCGGATC 57.552 39.130 9.46 0.16 0.00 3.36
2131 2634 4.093472 TGGAAAGAGAAAAACCGGATCA 57.907 40.909 9.46 0.00 0.00 2.92
2132 2635 4.662278 TGGAAAGAGAAAAACCGGATCAT 58.338 39.130 9.46 0.00 0.00 2.45
2133 2636 5.811190 TGGAAAGAGAAAAACCGGATCATA 58.189 37.500 9.46 0.00 0.00 2.15
2134 2637 6.423182 TGGAAAGAGAAAAACCGGATCATAT 58.577 36.000 9.46 0.00 0.00 1.78
2135 2638 7.570132 TGGAAAGAGAAAAACCGGATCATATA 58.430 34.615 9.46 0.00 0.00 0.86
2136 2639 8.217799 TGGAAAGAGAAAAACCGGATCATATAT 58.782 33.333 9.46 0.00 0.00 0.86
2137 2640 8.507249 GGAAAGAGAAAAACCGGATCATATATG 58.493 37.037 9.46 6.36 0.00 1.78
2138 2641 7.440523 AAGAGAAAAACCGGATCATATATGC 57.559 36.000 9.46 0.00 0.00 3.14
2139 2642 6.533730 AGAGAAAAACCGGATCATATATGCA 58.466 36.000 9.46 0.00 0.00 3.96
2140 2643 7.170965 AGAGAAAAACCGGATCATATATGCAT 58.829 34.615 9.46 3.79 0.00 3.96
2141 2644 7.120285 AGAGAAAAACCGGATCATATATGCATG 59.880 37.037 9.46 0.00 0.00 4.06
2142 2645 5.902613 AAAACCGGATCATATATGCATGG 57.097 39.130 9.46 9.17 0.00 3.66
2143 2646 3.565764 ACCGGATCATATATGCATGGG 57.434 47.619 9.46 9.00 0.00 4.00
2197 2700 3.464111 TTCTCTCGGACCTTCGTTTTT 57.536 42.857 0.00 0.00 0.00 1.94
2243 2746 0.388520 GAAAGCGAATGTTGGCCCAC 60.389 55.000 0.00 0.00 31.78 4.61
2244 2747 2.141122 AAAGCGAATGTTGGCCCACG 62.141 55.000 0.00 0.00 31.78 4.94
2245 2748 3.053291 GCGAATGTTGGCCCACGA 61.053 61.111 0.00 0.00 0.00 4.35
2246 2749 3.039202 GCGAATGTTGGCCCACGAG 62.039 63.158 0.00 0.00 0.00 4.18
2247 2750 2.877691 GAATGTTGGCCCACGAGC 59.122 61.111 0.00 0.00 0.00 5.03
2268 2771 3.084039 CAATTGTCAAGGCCTGCTTAGA 58.916 45.455 5.69 0.00 0.00 2.10
2277 2780 1.222936 CCTGCTTAGAGGGCTGTGG 59.777 63.158 0.00 0.00 0.00 4.17
2284 2787 3.641906 GCTTAGAGGGCTGTGGTAGATAA 59.358 47.826 0.00 0.00 0.00 1.75
2286 2789 5.480772 GCTTAGAGGGCTGTGGTAGATAATA 59.519 44.000 0.00 0.00 0.00 0.98
2287 2790 6.014499 GCTTAGAGGGCTGTGGTAGATAATAA 60.014 42.308 0.00 0.00 0.00 1.40
2288 2791 7.540474 TTAGAGGGCTGTGGTAGATAATAAG 57.460 40.000 0.00 0.00 0.00 1.73
2290 2793 6.621394 AGAGGGCTGTGGTAGATAATAAGTA 58.379 40.000 0.00 0.00 0.00 2.24
2291 2794 6.494146 AGAGGGCTGTGGTAGATAATAAGTAC 59.506 42.308 0.00 0.00 0.00 2.73
2292 2795 6.382925 AGGGCTGTGGTAGATAATAAGTACT 58.617 40.000 0.00 0.00 0.00 2.73
2294 2797 7.015389 AGGGCTGTGGTAGATAATAAGTACTTC 59.985 40.741 12.39 0.00 0.00 3.01
2296 2799 7.015389 GGCTGTGGTAGATAATAAGTACTTCCT 59.985 40.741 12.39 2.95 0.00 3.36
2297 2800 8.083462 GCTGTGGTAGATAATAAGTACTTCCTC 58.917 40.741 12.39 6.16 0.00 3.71
2299 2802 9.132923 TGTGGTAGATAATAAGTACTTCCTCAG 57.867 37.037 12.39 0.00 0.00 3.35
2364 2874 3.793559 AGAGCGTTTAGAACACACTTGT 58.206 40.909 0.00 0.00 37.67 3.16
2373 2883 1.921887 GAACACACTTGTCACGACGAA 59.078 47.619 0.00 0.00 33.55 3.85
2677 3187 0.654160 CGTACGTAGGTGATCGAGCA 59.346 55.000 7.22 0.00 0.00 4.26
2684 3194 2.982130 GTGATCGAGCACCCACCT 59.018 61.111 22.89 0.00 32.68 4.00
2739 3262 0.539438 TCCATGGTCCTGGTTTGTGC 60.539 55.000 12.58 0.00 37.57 4.57
2894 3417 7.598869 TGCTTGTCGATCATACCAAGATTATAC 59.401 37.037 13.58 0.00 37.14 1.47
2895 3418 7.201359 GCTTGTCGATCATACCAAGATTATACG 60.201 40.741 13.58 0.00 37.14 3.06
2896 3419 7.210718 TGTCGATCATACCAAGATTATACGT 57.789 36.000 0.00 0.00 0.00 3.57
2897 3420 8.326680 TGTCGATCATACCAAGATTATACGTA 57.673 34.615 0.00 0.00 0.00 3.57
2898 3421 8.448615 TGTCGATCATACCAAGATTATACGTAG 58.551 37.037 0.08 0.00 0.00 3.51
2899 3422 7.428761 GTCGATCATACCAAGATTATACGTAGC 59.571 40.741 0.08 0.00 0.00 3.58
2902 3425 7.279750 TCATACCAAGATTATACGTAGCACA 57.720 36.000 0.08 0.00 0.00 4.57
2903 3426 7.892609 TCATACCAAGATTATACGTAGCACAT 58.107 34.615 0.08 0.00 0.00 3.21
2905 3428 6.844696 ACCAAGATTATACGTAGCACATTG 57.155 37.500 0.08 3.82 0.00 2.82
2907 3430 7.494211 ACCAAGATTATACGTAGCACATTGTA 58.506 34.615 0.08 0.00 0.00 2.41
2908 3431 7.437267 ACCAAGATTATACGTAGCACATTGTAC 59.563 37.037 0.08 0.00 0.00 2.90
2909 3432 7.652105 CCAAGATTATACGTAGCACATTGTACT 59.348 37.037 0.08 0.00 0.00 2.73
2910 3433 8.691727 CAAGATTATACGTAGCACATTGTACTC 58.308 37.037 0.08 0.00 0.00 2.59
2911 3434 7.368833 AGATTATACGTAGCACATTGTACTCC 58.631 38.462 0.08 0.00 0.00 3.85
2914 3587 1.917955 CGTAGCACATTGTACTCCGTG 59.082 52.381 0.00 0.00 0.00 4.94
2935 3608 6.421801 CCGTGCATCTCAAAAGAAAAAGAAAT 59.578 34.615 0.00 0.00 34.49 2.17
2937 3610 7.167968 CGTGCATCTCAAAAGAAAAAGAAATGA 59.832 33.333 0.00 0.00 34.49 2.57
2938 3611 8.985805 GTGCATCTCAAAAGAAAAAGAAATGAT 58.014 29.630 0.00 0.00 34.49 2.45
2956 3629 9.394767 AGAAATGATTATGCTGTACATTGTACA 57.605 29.630 24.25 24.25 40.38 2.90
2982 3655 1.604278 GAGTTGACCTTCAGTTGCCAC 59.396 52.381 0.00 0.00 0.00 5.01
3011 3684 3.087273 CTGTATGCGTGCAGGTGCG 62.087 63.158 15.59 0.00 45.83 5.34
3050 3723 1.595093 CCAAGGATTTCGGGTGGCAC 61.595 60.000 9.70 9.70 0.00 5.01
3109 3782 1.202627 CCAGCCTTCTCAGTCCTATGC 60.203 57.143 0.00 0.00 0.00 3.14
3134 3807 2.832129 TCGCTATGGAAGGTGAAGTTCT 59.168 45.455 4.17 0.00 0.00 3.01
3141 3814 5.319043 TGGAAGGTGAAGTTCTTACCATT 57.681 39.130 13.34 6.14 36.94 3.16
3150 3823 9.880157 GGTGAAGTTCTTACCATTACTACAATA 57.120 33.333 4.17 0.00 34.61 1.90
3182 3855 5.014202 GTCTGGGGCTATTTTGTTTTCCTA 58.986 41.667 0.00 0.00 0.00 2.94
3183 3856 5.656859 GTCTGGGGCTATTTTGTTTTCCTAT 59.343 40.000 0.00 0.00 0.00 2.57
3184 3857 5.891551 TCTGGGGCTATTTTGTTTTCCTATC 59.108 40.000 0.00 0.00 0.00 2.08
3185 3858 4.959839 TGGGGCTATTTTGTTTTCCTATCC 59.040 41.667 0.00 0.00 0.00 2.59
3186 3859 4.959839 GGGGCTATTTTGTTTTCCTATCCA 59.040 41.667 0.00 0.00 0.00 3.41
3212 3885 1.081641 CGAAGGCAAAGCAGTGCAG 60.082 57.895 19.20 7.88 46.81 4.41
3214 3887 0.318445 GAAGGCAAAGCAGTGCAGTG 60.318 55.000 19.20 17.56 46.81 3.66
3215 3888 2.355481 GGCAAAGCAGTGCAGTGC 60.355 61.111 34.42 34.42 46.81 4.40
3241 3914 8.260270 TGATTAAGATGCTTCATGGATAATCG 57.740 34.615 2.07 0.00 0.00 3.34
3339 4012 4.463879 CCTCCAGCTGCAGGGTCG 62.464 72.222 16.71 0.00 0.00 4.79
3449 4475 8.107591 TCGAAAACGTCTTATATTTAGGAACG 57.892 34.615 0.00 0.00 0.00 3.95
3479 4506 5.980116 ACTACGTTTCTATGTGAGATGATGC 59.020 40.000 0.00 0.00 32.88 3.91
3480 4507 4.758688 ACGTTTCTATGTGAGATGATGCA 58.241 39.130 0.00 0.00 32.88 3.96
3481 4508 5.363101 ACGTTTCTATGTGAGATGATGCAT 58.637 37.500 0.00 0.00 32.88 3.96
3482 4509 5.464722 ACGTTTCTATGTGAGATGATGCATC 59.535 40.000 20.14 20.14 40.80 3.91
3483 4510 5.388164 CGTTTCTATGTGAGATGATGCATCG 60.388 44.000 21.34 3.58 44.67 3.84
3505 4532 0.588252 CTTTCCGATGCTAATGCCCG 59.412 55.000 0.00 0.00 38.71 6.13
3607 4634 2.482142 GGTCGACTCCATCTTCCACATC 60.482 54.545 16.46 0.00 0.00 3.06
3640 4667 2.983592 GCCACGGGGTTTCTGGTG 60.984 66.667 5.12 0.00 36.17 4.17
3658 4685 1.276705 GTGGAGTGGGACTTCTTCCTC 59.723 57.143 0.00 0.00 45.09 3.71
3706 4733 1.040646 TCTCCTACATGACCGCCATC 58.959 55.000 0.00 0.00 31.94 3.51
3738 4765 4.249661 GAGAGGTGACTGATTTCTGAACC 58.750 47.826 0.00 0.00 44.43 3.62
3748 4775 3.557220 TCTGAACCCAGAACGCCA 58.443 55.556 0.00 0.00 45.74 5.69
3753 4780 1.228154 AACCCAGAACGCCAACCTC 60.228 57.895 0.00 0.00 0.00 3.85
3772 4799 3.017323 CGCTCATCACCGCCAATC 58.983 61.111 0.00 0.00 0.00 2.67
3773 4800 1.815003 CGCTCATCACCGCCAATCA 60.815 57.895 0.00 0.00 0.00 2.57
3774 4801 1.769098 CGCTCATCACCGCCAATCAG 61.769 60.000 0.00 0.00 0.00 2.90
3775 4802 2.020131 CTCATCACCGCCAATCAGC 58.980 57.895 0.00 0.00 0.00 4.26
3791 4818 4.040068 GCCTCGAGCTAGCAATGG 57.960 61.111 18.83 13.80 38.99 3.16
3792 4819 2.250237 GCCTCGAGCTAGCAATGGC 61.250 63.158 18.83 19.37 38.99 4.40
3793 4820 1.596477 CCTCGAGCTAGCAATGGCC 60.596 63.158 18.83 0.00 42.56 5.36
3794 4821 1.953138 CTCGAGCTAGCAATGGCCG 60.953 63.158 18.83 9.96 42.56 6.13
3795 4822 3.643978 CGAGCTAGCAATGGCCGC 61.644 66.667 18.83 0.00 42.56 6.53
3796 4823 3.282920 GAGCTAGCAATGGCCGCC 61.283 66.667 18.83 1.04 42.56 6.13
3799 4826 4.545706 CTAGCAATGGCCGCCGGA 62.546 66.667 7.68 0.00 42.56 5.14
3800 4827 3.832237 CTAGCAATGGCCGCCGGAT 62.832 63.158 7.68 0.00 42.56 4.18
3801 4828 2.449031 CTAGCAATGGCCGCCGGATA 62.449 60.000 7.68 0.00 42.56 2.59
3802 4829 2.449031 TAGCAATGGCCGCCGGATAG 62.449 60.000 7.68 0.00 42.56 2.08
3803 4830 3.357079 CAATGGCCGCCGGATAGC 61.357 66.667 7.68 3.40 0.00 2.97
3804 4831 3.872603 AATGGCCGCCGGATAGCA 61.873 61.111 7.68 0.00 0.00 3.49
3805 4832 3.414136 AATGGCCGCCGGATAGCAA 62.414 57.895 7.68 0.00 0.00 3.91
3806 4833 4.849310 TGGCCGCCGGATAGCAAC 62.849 66.667 7.68 0.00 0.00 4.17
3807 4834 4.849310 GGCCGCCGGATAGCAACA 62.849 66.667 7.68 0.00 0.00 3.33
3808 4835 2.591715 GCCGCCGGATAGCAACAT 60.592 61.111 7.68 0.00 0.00 2.71
3809 4836 2.607892 GCCGCCGGATAGCAACATC 61.608 63.158 7.68 0.00 0.00 3.06
3810 4837 1.961277 CCGCCGGATAGCAACATCC 60.961 63.158 5.05 2.69 41.06 3.51
3811 4838 1.069765 CGCCGGATAGCAACATCCT 59.930 57.895 5.05 0.00 42.12 3.24
3812 4839 0.946221 CGCCGGATAGCAACATCCTC 60.946 60.000 5.05 2.45 42.12 3.71
3813 4840 0.106708 GCCGGATAGCAACATCCTCA 59.893 55.000 5.05 0.00 42.12 3.86
3814 4841 1.875576 GCCGGATAGCAACATCCTCAG 60.876 57.143 5.05 1.74 42.12 3.35
3815 4842 1.414181 CCGGATAGCAACATCCTCAGT 59.586 52.381 0.00 0.00 42.12 3.41
3816 4843 2.628178 CCGGATAGCAACATCCTCAGTA 59.372 50.000 0.00 0.00 42.12 2.74
3817 4844 3.553096 CCGGATAGCAACATCCTCAGTAC 60.553 52.174 0.00 0.00 42.12 2.73
3818 4845 3.553096 CGGATAGCAACATCCTCAGTACC 60.553 52.174 9.52 0.00 42.12 3.34
3819 4846 3.388024 GGATAGCAACATCCTCAGTACCA 59.612 47.826 5.09 0.00 41.24 3.25
3820 4847 4.040952 GGATAGCAACATCCTCAGTACCAT 59.959 45.833 5.09 0.00 41.24 3.55
3821 4848 3.272574 AGCAACATCCTCAGTACCATG 57.727 47.619 0.00 0.00 0.00 3.66
3839 4866 3.318275 CCATGAGCTGATGAAGGAAATGG 59.682 47.826 15.36 0.00 0.00 3.16
3840 4867 2.372264 TGAGCTGATGAAGGAAATGGC 58.628 47.619 0.00 0.00 0.00 4.40
3841 4868 1.332997 GAGCTGATGAAGGAAATGGCG 59.667 52.381 0.00 0.00 0.00 5.69
3845 4872 2.489329 CTGATGAAGGAAATGGCGTGTT 59.511 45.455 0.00 0.00 0.00 3.32
3848 4875 2.582052 TGAAGGAAATGGCGTGTTTCT 58.418 42.857 8.89 0.00 36.18 2.52
3850 4877 2.568623 AGGAAATGGCGTGTTTCTCT 57.431 45.000 8.89 3.77 36.18 3.10
3887 4914 0.896940 GGGTCTGGGTCTGTGTACGA 60.897 60.000 0.00 0.00 0.00 3.43
3891 4918 1.202842 TCTGGGTCTGTGTACGAGACA 60.203 52.381 20.60 5.91 41.50 3.41
3900 4927 0.957395 TGTACGAGACACCGGACTCC 60.957 60.000 9.46 2.57 43.43 3.85
4048 5075 1.792949 CACACAAGTCGGAGCAAGTAC 59.207 52.381 0.00 0.00 0.00 2.73
4123 5152 2.875317 TGTTTGCATGCTGACGTTTCTA 59.125 40.909 20.33 0.00 0.00 2.10
4126 5155 1.398041 TGCATGCTGACGTTTCTATGC 59.602 47.619 20.33 16.73 40.81 3.14
4135 5164 2.398903 CGTTTCTATGCAACGTCGAC 57.601 50.000 5.18 5.18 41.70 4.20
4170 5199 7.235606 TGAATAGTATAACTGGATGGAGAAGGG 59.764 40.741 0.00 0.00 0.00 3.95
4216 5245 3.495806 GGACTCCATGGGTGATCTTCATC 60.496 52.174 13.02 0.00 0.00 2.92
4228 5258 3.515502 TGATCTTCATCGGGTGAGTTCTT 59.484 43.478 0.00 0.00 38.29 2.52
4231 5261 5.477607 TCTTCATCGGGTGAGTTCTTAAA 57.522 39.130 0.00 0.00 38.29 1.52
4235 5265 4.868171 TCATCGGGTGAGTTCTTAAAATCG 59.132 41.667 0.00 0.00 32.18 3.34
4244 5274 7.703197 GGTGAGTTCTTAAAATCGAAACCAAAA 59.297 33.333 0.00 0.00 32.18 2.44
4286 5316 4.331968 TGAACCAAGTGACTTGTTCTTGT 58.668 39.130 25.78 15.69 39.58 3.16
4291 5321 4.346129 CAAGTGACTTGTTCTTGTCTTGC 58.654 43.478 16.84 0.00 36.79 4.01
4294 5324 3.375299 GTGACTTGTTCTTGTCTTGCTGT 59.625 43.478 0.00 0.00 34.57 4.40
4308 5344 1.667830 GCTGTCGTGCCTGCAAGTA 60.668 57.895 5.03 0.00 0.00 2.24
4316 5352 1.681264 GTGCCTGCAAGTAAACACCTT 59.319 47.619 0.00 0.00 0.00 3.50
4332 5368 3.387374 ACACCTTGCATTTTGATGACCAA 59.613 39.130 0.00 0.00 0.00 3.67
4368 5404 4.191544 CAATGTACTCATCGAATGTGGGT 58.808 43.478 0.00 0.00 32.56 4.51
4435 5471 3.007398 ACTCTTGCTCAGGAACAAGGTAG 59.993 47.826 11.34 6.23 42.82 3.18
4436 5472 3.239449 TCTTGCTCAGGAACAAGGTAGA 58.761 45.455 11.34 0.00 42.82 2.59
4470 5512 5.049886 CACTGCAACGCATCATATTCAGTAT 60.050 40.000 0.00 0.00 38.13 2.12
4542 5584 0.035534 TCGGCCATGTGCACAACTAT 60.036 50.000 25.72 3.79 43.89 2.12
4557 5599 1.007964 CTATGAGAGGACCTGCGCG 60.008 63.158 0.00 0.00 0.00 6.86
4566 5608 2.345991 ACCTGCGCGGTGTACAAT 59.654 55.556 20.43 0.00 46.80 2.71
4599 5641 1.153107 CATGCCGAGGAAGGATGCA 60.153 57.895 0.00 0.00 36.23 3.96
4601 5643 0.034186 ATGCCGAGGAAGGATGCAAA 60.034 50.000 0.00 0.00 35.30 3.68
4605 5647 1.027357 CGAGGAAGGATGCAAATGGG 58.973 55.000 0.00 0.00 0.00 4.00
4682 5724 1.671742 GAGGGTTCAGCTTGGACGA 59.328 57.895 0.00 0.00 0.00 4.20
4693 5735 1.271102 GCTTGGACGACTTCTCTCTGT 59.729 52.381 0.00 0.00 0.00 3.41
4739 5781 6.737254 ATTTTAACAGTGGATTGTAGGACG 57.263 37.500 0.00 0.00 0.00 4.79
4865 5922 2.917971 CGTGTCGAGGATTTCAGAGTTC 59.082 50.000 0.00 0.00 0.00 3.01
4891 5948 3.663176 CAGGGTGCACGCCACAAG 61.663 66.667 28.26 11.13 46.50 3.16
4901 5958 1.369692 CGCCACAAGGACCAGTGTA 59.630 57.895 13.92 0.00 36.89 2.90
4925 5982 3.075148 GGTTCAGGTAAGCTTCACCTTC 58.925 50.000 19.11 13.97 44.18 3.46
4930 5987 3.753797 CAGGTAAGCTTCACCTTCCTTTC 59.246 47.826 19.11 0.00 44.18 2.62
4945 6002 5.456763 CCTTCCTTTCTTTCTTCTCTTGGGA 60.457 44.000 0.00 0.00 0.00 4.37
4952 6009 8.817092 TTTCTTTCTTCTCTTGGGAAGTTTTA 57.183 30.769 9.73 0.00 42.19 1.52
4964 6021 7.499895 TCTTGGGAAGTTTTACATACGAAGTTT 59.500 33.333 0.00 0.00 37.78 2.66
4990 6047 0.603569 GAGGCTCAGTTTCCTCGACA 59.396 55.000 10.25 0.00 39.43 4.35
5040 6097 1.195448 CAGTTTGTAAGCTCAGGCACG 59.805 52.381 0.00 0.00 41.70 5.34
5103 6160 3.057969 TGATCCAAGTGCAGTTACAGG 57.942 47.619 6.43 4.60 0.00 4.00
5108 6165 1.726791 CAAGTGCAGTTACAGGCTACG 59.273 52.381 6.43 0.00 0.00 3.51
5180 6243 8.926715 TGTGATGTACTGTAAATACTGATGAC 57.073 34.615 4.71 1.58 0.00 3.06
5212 6275 4.088496 GCTGAATTGCAATTAACACGTCAC 59.912 41.667 24.15 9.36 0.00 3.67
5304 6392 9.890352 GAAATCTTATCAACCAAGATAGATTGC 57.110 33.333 0.00 0.00 40.92 3.56
5343 6431 5.418840 AGTTTGTGGATATAAAACTGCCCAG 59.581 40.000 0.00 0.00 41.38 4.45
5372 6460 9.573166 AAATATTTCTCACATATTCGATTCCCA 57.427 29.630 0.00 0.00 0.00 4.37
5375 6463 7.695480 TTTCTCACATATTCGATTCCCAAAA 57.305 32.000 0.00 0.00 0.00 2.44
5379 6467 7.339212 TCTCACATATTCGATTCCCAAAACAAT 59.661 33.333 0.00 0.00 0.00 2.71
5395 6483 7.416326 CCCAAAACAATAAGTATAGCACCCTTC 60.416 40.741 0.00 0.00 0.00 3.46
5402 6490 4.206244 AGTATAGCACCCTTCCTCTCAT 57.794 45.455 0.00 0.00 0.00 2.90
5415 6503 3.349927 TCCTCTCATTGAACTTGCATGG 58.650 45.455 4.44 0.00 0.00 3.66
5417 6505 3.508793 CCTCTCATTGAACTTGCATGGTT 59.491 43.478 4.44 4.99 0.00 3.67
5418 6506 4.021719 CCTCTCATTGAACTTGCATGGTTT 60.022 41.667 4.44 0.00 0.00 3.27
5439 6527 7.501892 TGGTTTATGTAGAATAAGATGCATGCA 59.498 33.333 25.04 25.04 0.00 3.96
5440 6528 8.517878 GGTTTATGTAGAATAAGATGCATGCAT 58.482 33.333 32.66 32.66 39.69 3.96
5441 6529 9.338291 GTTTATGTAGAATAAGATGCATGCATG 57.662 33.333 36.73 22.70 36.70 4.06
5442 6530 8.851541 TTATGTAGAATAAGATGCATGCATGA 57.148 30.769 36.73 21.37 36.70 3.07
5443 6531 6.549912 TGTAGAATAAGATGCATGCATGAC 57.450 37.500 36.73 22.93 36.70 3.06
5444 6532 5.471116 TGTAGAATAAGATGCATGCATGACC 59.529 40.000 36.73 22.20 36.70 4.02
5445 6533 4.466827 AGAATAAGATGCATGCATGACCA 58.533 39.130 36.73 19.18 36.70 4.02
5447 6535 2.139323 AAGATGCATGCATGACCACT 57.861 45.000 36.73 23.33 36.70 4.00
5448 6536 3.286329 AAGATGCATGCATGACCACTA 57.714 42.857 36.73 4.21 36.70 2.74
5449 6537 3.286329 AGATGCATGCATGACCACTAA 57.714 42.857 36.73 3.35 36.70 2.24
5451 6539 4.212716 AGATGCATGCATGACCACTAATT 58.787 39.130 36.73 10.02 36.70 1.40
5497 6984 6.647334 TTAAATGTGGCATGAGACTCAAAA 57.353 33.333 9.70 0.00 28.67 2.44
5499 6986 2.929641 TGTGGCATGAGACTCAAAACA 58.070 42.857 9.70 8.71 0.00 2.83
5511 6998 7.748847 TGAGACTCAAAACACTTTAACTCAAC 58.251 34.615 1.64 0.00 0.00 3.18
5513 7000 7.752695 AGACTCAAAACACTTTAACTCAACTG 58.247 34.615 0.00 0.00 0.00 3.16
5518 7005 9.005777 TCAAAACACTTTAACTCAACTGTACTT 57.994 29.630 0.00 0.00 0.00 2.24
5532 7019 7.676947 TCAACTGTACTTAAAGTGAGCCTAAT 58.323 34.615 0.00 0.00 0.00 1.73
5533 7020 8.809066 TCAACTGTACTTAAAGTGAGCCTAATA 58.191 33.333 0.00 0.00 0.00 0.98
5535 7022 8.363761 ACTGTACTTAAAGTGAGCCTAATACT 57.636 34.615 0.00 0.00 0.00 2.12
5536 7023 8.468399 ACTGTACTTAAAGTGAGCCTAATACTC 58.532 37.037 0.00 0.00 34.62 2.59
5550 9960 9.825109 GAGCCTAATACTCCTATAATGGAAATC 57.175 37.037 0.00 0.00 35.43 2.17
5551 9961 9.338968 AGCCTAATACTCCTATAATGGAAATCA 57.661 33.333 0.00 0.00 35.43 2.57
5580 9990 6.836577 TTTTCAAATGAGCCTTTTAAACCG 57.163 33.333 0.00 0.00 0.00 4.44
5592 10002 3.428413 TTTAAACCGGAAAGGAGGGAG 57.572 47.619 9.46 0.00 45.00 4.30
5603 10013 3.567478 AAGGAGGGAGTATGATTGTGC 57.433 47.619 0.00 0.00 0.00 4.57
5604 10014 2.769209 AGGAGGGAGTATGATTGTGCT 58.231 47.619 0.00 0.00 0.00 4.40
5605 10015 2.437281 AGGAGGGAGTATGATTGTGCTG 59.563 50.000 0.00 0.00 0.00 4.41
5606 10016 2.171448 GGAGGGAGTATGATTGTGCTGT 59.829 50.000 0.00 0.00 0.00 4.40
5625 10035 6.428385 GCTGTAGTTAGCATCACAGATTTT 57.572 37.500 4.83 0.00 43.17 1.82
5630 10040 4.093998 AGTTAGCATCACAGATTTTCGCAG 59.906 41.667 0.00 0.00 0.00 5.18
5654 10064 8.918658 CAGGCATTTATGTGCATTGTATATTTC 58.081 33.333 0.00 0.00 46.81 2.17
5666 10076 6.019075 GCATTGTATATTTCTGACGCTACACA 60.019 38.462 0.00 0.00 0.00 3.72
5667 10077 7.307396 GCATTGTATATTTCTGACGCTACACAT 60.307 37.037 0.00 0.00 0.00 3.21
5668 10078 8.551205 CATTGTATATTTCTGACGCTACACATT 58.449 33.333 0.00 0.00 0.00 2.71
5670 10080 8.487313 TGTATATTTCTGACGCTACACATTTT 57.513 30.769 0.00 0.00 0.00 1.82
5671 10081 8.941977 TGTATATTTCTGACGCTACACATTTTT 58.058 29.630 0.00 0.00 0.00 1.94
5719 10407 2.223641 CCATCCATCAAAATGCAGACCG 60.224 50.000 0.00 0.00 0.00 4.79
5738 10426 1.470979 CGGTCCGGATGTTCGAATTCT 60.471 52.381 7.81 0.00 0.00 2.40
5740 10428 3.735820 CGGTCCGGATGTTCGAATTCTTA 60.736 47.826 7.81 0.00 0.00 2.10
5762 10450 3.269178 CAAACCAGAAGCAAAGCCAAAA 58.731 40.909 0.00 0.00 0.00 2.44
5806 10494 0.878416 CGAATTCCTGCAAACCGGAA 59.122 50.000 9.46 7.53 42.96 4.30
5811 10499 0.753479 TCCTGCAAACCGGAAGCAAA 60.753 50.000 9.46 3.43 37.89 3.68
5854 10542 2.363925 GACCTCCGCCACCTAGGT 60.364 66.667 9.21 9.21 46.33 3.08
5858 10546 1.682684 CTCCGCCACCTAGGTGTCT 60.683 63.158 34.49 2.13 46.87 3.41
5866 10554 2.359355 CCACCTAGGTGTCTGATACCCT 60.359 54.545 34.49 9.64 44.02 4.34
5879 10567 0.529378 ATACCCTCGACCGACACAAC 59.471 55.000 0.00 0.00 0.00 3.32
5880 10568 1.526575 TACCCTCGACCGACACAACC 61.527 60.000 0.00 0.00 0.00 3.77
5901 10589 0.466124 CCCCCTCTCTTGTTCCGATC 59.534 60.000 0.00 0.00 0.00 3.69
5907 10595 1.974957 TCTCTTGTTCCGATCCAACCA 59.025 47.619 0.00 0.00 0.00 3.67
5913 10601 4.295141 TGTTCCGATCCAACCATTACTT 57.705 40.909 0.00 0.00 0.00 2.24
5920 10608 2.802719 TCCAACCATTACTTTGCTCCC 58.197 47.619 0.00 0.00 0.00 4.30
5922 10610 2.524306 CAACCATTACTTTGCTCCCCA 58.476 47.619 0.00 0.00 0.00 4.96
5937 10625 1.437160 CCCACGCCACATTTATGCC 59.563 57.895 0.00 0.00 0.00 4.40
5984 10672 4.776322 CCCATGCCAGCCGAACGA 62.776 66.667 0.00 0.00 0.00 3.85
5988 10676 3.529341 ATGCCAGCCGAACGACACA 62.529 57.895 0.00 0.00 0.00 3.72
5990 10678 2.935955 CCAGCCGAACGACACAAC 59.064 61.111 0.00 0.00 0.00 3.32
6006 10694 1.405105 ACAACATTCACACTGGTGCAC 59.595 47.619 8.80 8.80 44.87 4.57
6034 10722 4.792804 GTCTGCTCTGGCCTGCCC 62.793 72.222 3.32 0.00 37.74 5.36
6067 10755 4.228097 CTCGCTTTCCATGCCGCG 62.228 66.667 0.00 0.00 46.28 6.46
6073 10761 1.826327 CTTTCCATGCCGCGTTAATG 58.174 50.000 4.92 5.63 0.00 1.90
6074 10762 0.179150 TTTCCATGCCGCGTTAATGC 60.179 50.000 9.74 9.74 0.00 3.56
6084 10772 1.613270 GCGTTAATGCCGGTTCAAAG 58.387 50.000 8.56 0.00 0.00 2.77
6085 10773 1.198178 GCGTTAATGCCGGTTCAAAGA 59.802 47.619 8.56 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 3.417069 TGACAGGACCCAATGTTGTAG 57.583 47.619 0.00 0.00 0.00 2.74
117 118 3.137544 AGTTGACAGGACCCAATGTTGTA 59.862 43.478 0.00 0.00 0.00 2.41
118 119 2.091885 AGTTGACAGGACCCAATGTTGT 60.092 45.455 0.00 0.00 0.00 3.32
125 126 2.025793 TCAACAAAGTTGACAGGACCCA 60.026 45.455 8.39 0.00 0.00 4.51
191 192 1.671054 ACTGCCGTGTGTATGCACC 60.671 57.895 11.66 2.20 44.65 5.01
201 202 3.716006 CGAACCAGCACTGCCGTG 61.716 66.667 3.57 3.57 44.07 4.94
232 237 6.640907 CACTGGAATACAACAGGCTTTAAAAC 59.359 38.462 0.00 0.00 39.00 2.43
286 291 8.133627 CCCAGCAACAATATCTTTTGAATAGAG 58.866 37.037 0.00 0.00 0.00 2.43
301 306 2.762327 GTTCCATGATCCCAGCAACAAT 59.238 45.455 0.00 0.00 0.00 2.71
302 307 2.170166 GTTCCATGATCCCAGCAACAA 58.830 47.619 0.00 0.00 0.00 2.83
329 334 7.483307 CAAAACATCCTCTTCTTTTTCACAGA 58.517 34.615 0.00 0.00 0.00 3.41
346 355 0.814457 TACGGGCATGGCAAAACATC 59.186 50.000 22.06 0.21 0.00 3.06
403 420 5.643777 GCTAATTAATCACCGATATGCAGGT 59.356 40.000 0.00 0.00 42.34 4.00
410 427 6.869913 CCCGTAAAGCTAATTAATCACCGATA 59.130 38.462 0.00 0.00 0.00 2.92
486 506 2.793946 GCCATAGTGCAAGCCGTG 59.206 61.111 0.00 0.00 0.00 4.94
488 508 2.819595 ACGCCATAGTGCAAGCCG 60.820 61.111 0.00 0.00 0.00 5.52
529 549 2.734723 GCTCACGCGTCAAGCTGA 60.735 61.111 27.39 13.79 45.59 4.26
534 554 2.355837 GTCCTGCTCACGCGTCAA 60.356 61.111 9.86 0.00 39.65 3.18
547 567 1.760613 TCGGTTCTTGTCAACTGTCCT 59.239 47.619 0.00 0.00 34.66 3.85
584 604 5.730550 ACATCAAGATTAAGGTGTCGCTTA 58.269 37.500 0.00 0.00 0.00 3.09
588 608 5.872617 TGGTAACATCAAGATTAAGGTGTCG 59.127 40.000 0.00 0.00 46.17 4.35
631 652 3.963428 AGTATATCCTTCCGGTGATGC 57.037 47.619 0.00 0.00 0.00 3.91
639 660 6.071840 CCAGTAGCACAGTAGTATATCCTTCC 60.072 46.154 0.00 0.00 0.00 3.46
652 673 1.293498 CTTCGGCCAGTAGCACAGT 59.707 57.895 2.24 0.00 46.50 3.55
653 674 0.530744 TACTTCGGCCAGTAGCACAG 59.469 55.000 2.24 0.00 46.50 3.66
654 675 1.191535 ATACTTCGGCCAGTAGCACA 58.808 50.000 2.24 0.00 46.50 4.57
673 694 2.679837 GCGCTGATGATCTCCAAGAAAA 59.320 45.455 0.00 0.00 0.00 2.29
674 695 2.283298 GCGCTGATGATCTCCAAGAAA 58.717 47.619 0.00 0.00 0.00 2.52
675 696 1.207811 TGCGCTGATGATCTCCAAGAA 59.792 47.619 9.73 0.00 0.00 2.52
795 1050 0.962356 GGGGCATTGGGATATCAGCG 60.962 60.000 4.83 0.00 0.00 5.18
841 1096 2.594962 GGACACACCAACACGAGCG 61.595 63.158 0.00 0.00 38.79 5.03
848 1103 0.693049 ATGGAGGAGGACACACCAAC 59.307 55.000 0.00 0.00 42.04 3.77
849 1104 1.351017 GAATGGAGGAGGACACACCAA 59.649 52.381 0.00 0.00 42.04 3.67
850 1105 0.984230 GAATGGAGGAGGACACACCA 59.016 55.000 0.00 0.00 42.04 4.17
851 1106 0.253327 GGAATGGAGGAGGACACACC 59.747 60.000 0.00 0.00 39.35 4.16
852 1107 0.253327 GGGAATGGAGGAGGACACAC 59.747 60.000 0.00 0.00 0.00 3.82
853 1108 0.914417 GGGGAATGGAGGAGGACACA 60.914 60.000 0.00 0.00 0.00 3.72
857 1140 1.307866 GGTGGGGAATGGAGGAGGA 60.308 63.158 0.00 0.00 0.00 3.71
866 1149 0.395173 GTACAATGGCGGTGGGGAAT 60.395 55.000 0.00 0.00 0.00 3.01
881 1164 2.019249 AGCTTATACTGGCGACGTACA 58.981 47.619 0.00 0.00 0.00 2.90
909 1195 4.368808 CGCAAAGTGCACGGACGG 62.369 66.667 12.01 1.96 45.36 4.79
943 1229 2.477754 CGTACGTACAGTGAGTGAGTGA 59.522 50.000 24.50 0.00 0.00 3.41
944 1230 2.835883 CGTACGTACAGTGAGTGAGTG 58.164 52.381 24.50 0.81 0.00 3.51
945 1231 1.196354 GCGTACGTACAGTGAGTGAGT 59.804 52.381 24.50 0.00 0.00 3.41
946 1232 1.785870 CGCGTACGTACAGTGAGTGAG 60.786 57.143 24.50 6.79 33.53 3.51
1018 1309 3.056328 GAGGAAACCAGCACGCCC 61.056 66.667 0.00 0.00 0.00 6.13
1038 1329 2.210013 ACAGAGGCCGAGAAGCACA 61.210 57.895 0.00 0.00 0.00 4.57
1128 1428 0.666577 GGTTGACCGTCCTGAACTCG 60.667 60.000 0.00 0.00 0.00 4.18
1169 1469 3.384532 GGTACGGGCTCGGGTTCA 61.385 66.667 12.42 0.00 41.39 3.18
1316 1616 3.497118 CTCTTCTCTAGAGTTGTGCGTG 58.503 50.000 19.21 3.03 44.54 5.34
1378 1682 7.233348 AGGATAAACCAAAACATCACATCAGTT 59.767 33.333 0.00 0.00 42.04 3.16
1379 1683 6.721208 AGGATAAACCAAAACATCACATCAGT 59.279 34.615 0.00 0.00 42.04 3.41
1380 1684 7.161773 AGGATAAACCAAAACATCACATCAG 57.838 36.000 0.00 0.00 42.04 2.90
1465 1769 3.466836 GCAAAACGATCGTGAACACTAC 58.533 45.455 23.51 2.69 0.00 2.73
1563 1871 4.664677 ACGCCGCTCAGTGGACAC 62.665 66.667 9.02 0.00 34.74 3.67
1620 1928 1.003355 CACAGGGTAGTGGCACAGG 60.003 63.158 21.41 4.66 41.80 4.00
1664 1975 0.820226 TCAGCTGGCTAGTAGTGCAG 59.180 55.000 15.13 6.44 0.00 4.41
1674 1985 2.266055 GCTAACGGTCAGCTGGCT 59.734 61.111 19.48 0.18 36.07 4.75
1679 1990 1.877165 GCGGTAGCTAACGGTCAGC 60.877 63.158 30.87 11.44 41.01 4.26
1750 2252 1.863880 CGTACGCGAGACTCACAGC 60.864 63.158 15.93 0.00 41.33 4.40
1806 2308 5.163923 ACGAAATATATCGAGTGCATGCATG 60.164 40.000 25.64 22.70 45.48 4.06
1807 2309 4.931601 ACGAAATATATCGAGTGCATGCAT 59.068 37.500 25.64 12.95 45.48 3.96
1808 2310 4.306600 ACGAAATATATCGAGTGCATGCA 58.693 39.130 18.46 18.46 45.48 3.96
1826 2328 0.528924 ACATGCCGTGCTAGTACGAA 59.471 50.000 31.25 20.13 46.46 3.85
1889 2391 0.328926 TTAACGGAGGGCGGGAAATT 59.671 50.000 0.00 0.00 0.00 1.82
1890 2392 0.107361 CTTAACGGAGGGCGGGAAAT 60.107 55.000 0.00 0.00 0.00 2.17
1891 2393 1.193462 TCTTAACGGAGGGCGGGAAA 61.193 55.000 0.00 0.00 0.00 3.13
1927 2429 2.679837 ACGAATCATAGCACTGCCTTTG 59.320 45.455 0.00 0.00 0.00 2.77
1951 2453 2.382746 CGCACATGACTGGACCGTG 61.383 63.158 0.00 0.00 0.00 4.94
1952 2454 1.529152 TACGCACATGACTGGACCGT 61.529 55.000 0.00 0.00 0.00 4.83
1967 2469 2.953303 GGCGAGGCTAACGTACGC 60.953 66.667 16.72 7.40 46.79 4.42
1968 2470 2.649975 CGGCGAGGCTAACGTACG 60.650 66.667 15.01 15.01 0.00 3.67
1969 2471 2.270297 TTCCGGCGAGGCTAACGTAC 62.270 60.000 9.30 0.00 40.77 3.67
1970 2472 1.996786 CTTCCGGCGAGGCTAACGTA 61.997 60.000 9.30 0.00 40.77 3.57
1971 2473 3.352338 CTTCCGGCGAGGCTAACGT 62.352 63.158 9.30 0.00 40.77 3.99
1989 2491 0.458669 CATGCTTCAAGGATGGCCAC 59.541 55.000 8.16 1.35 39.94 5.01
2011 2513 1.136872 CGTAGCACGCTTGAGAGCTC 61.137 60.000 5.27 5.27 46.96 4.09
2086 2589 1.634702 GAGGTTCACGTCATGCTCTC 58.365 55.000 0.00 0.00 0.00 3.20
2097 2600 4.461198 TCTCTTTCCAAAAGGAGGTTCAC 58.539 43.478 0.00 0.00 38.71 3.18
2111 2614 6.944234 ATATGATCCGGTTTTTCTCTTTCC 57.056 37.500 0.00 0.00 0.00 3.13
2117 2620 6.151648 CCATGCATATATGATCCGGTTTTTCT 59.848 38.462 17.10 0.00 0.00 2.52
2118 2621 6.324819 CCATGCATATATGATCCGGTTTTTC 58.675 40.000 17.10 0.00 0.00 2.29
2119 2622 5.185635 CCCATGCATATATGATCCGGTTTTT 59.814 40.000 17.10 0.00 0.00 1.94
2120 2623 4.706476 CCCATGCATATATGATCCGGTTTT 59.294 41.667 17.10 0.00 0.00 2.43
2121 2624 4.272489 CCCATGCATATATGATCCGGTTT 58.728 43.478 17.10 0.00 0.00 3.27
2122 2625 3.371917 CCCCATGCATATATGATCCGGTT 60.372 47.826 17.10 0.00 0.00 4.44
2123 2626 2.173356 CCCCATGCATATATGATCCGGT 59.827 50.000 17.10 0.00 0.00 5.28
2124 2627 2.854963 CCCCATGCATATATGATCCGG 58.145 52.381 17.10 9.81 0.00 5.14
2125 2628 2.224606 GCCCCATGCATATATGATCCG 58.775 52.381 17.10 1.41 40.77 4.18
2126 2629 2.224606 CGCCCCATGCATATATGATCC 58.775 52.381 17.10 0.00 41.33 3.36
2127 2630 1.605710 GCGCCCCATGCATATATGATC 59.394 52.381 17.10 0.19 41.33 2.92
2128 2631 1.683943 GCGCCCCATGCATATATGAT 58.316 50.000 17.10 4.60 41.33 2.45
2129 2632 0.394216 GGCGCCCCATGCATATATGA 60.394 55.000 18.11 2.36 41.33 2.15
2130 2633 1.717791 CGGCGCCCCATGCATATATG 61.718 60.000 23.46 8.45 41.33 1.78
2131 2634 1.451927 CGGCGCCCCATGCATATAT 60.452 57.895 23.46 0.00 41.33 0.86
2132 2635 2.046411 CGGCGCCCCATGCATATA 60.046 61.111 23.46 0.00 41.33 0.86
2171 2674 3.377798 ACGAAGGTCCGAGAGAATAACTC 59.622 47.826 0.00 0.00 45.22 3.01
2173 2676 3.779271 ACGAAGGTCCGAGAGAATAAC 57.221 47.619 0.00 0.00 0.00 1.89
2177 2680 3.464111 AAAAACGAAGGTCCGAGAGAA 57.536 42.857 0.00 0.00 0.00 2.87
2212 2715 7.254387 CCAACATTCGCTTTCATTTTTCTTCAA 60.254 33.333 0.00 0.00 0.00 2.69
2243 2746 0.169672 CAGGCCTTGACAATTGCTCG 59.830 55.000 0.00 0.00 0.00 5.03
2244 2747 0.108945 GCAGGCCTTGACAATTGCTC 60.109 55.000 0.00 3.35 0.00 4.26
2245 2748 0.541296 AGCAGGCCTTGACAATTGCT 60.541 50.000 0.00 3.77 37.09 3.91
2246 2749 0.319405 AAGCAGGCCTTGACAATTGC 59.681 50.000 0.00 0.70 30.99 3.56
2247 2750 3.084039 TCTAAGCAGGCCTTGACAATTG 58.916 45.455 0.00 3.24 34.95 2.32
2268 2771 6.382925 AGTACTTATTATCTACCACAGCCCT 58.617 40.000 0.00 0.00 0.00 5.19
2335 2838 9.680315 AGTGTGTTCTAAACGCTCTTATATATC 57.320 33.333 5.14 0.00 41.38 1.63
2343 2846 3.793559 ACAAGTGTGTTCTAAACGCTCT 58.206 40.909 5.14 4.02 44.71 4.09
2344 2847 3.554324 TGACAAGTGTGTTCTAAACGCTC 59.446 43.478 5.14 1.92 42.27 5.03
2345 2848 3.308866 GTGACAAGTGTGTTCTAAACGCT 59.691 43.478 5.14 0.00 42.27 5.07
2346 2849 3.604392 GTGACAAGTGTGTTCTAAACGC 58.396 45.455 0.00 0.00 38.41 4.84
2347 2850 3.548668 TCGTGACAAGTGTGTTCTAAACG 59.451 43.478 0.00 0.00 38.41 3.60
2349 2852 3.548668 CGTCGTGACAAGTGTGTTCTAAA 59.451 43.478 0.41 0.00 38.41 1.85
2351 2854 2.355444 TCGTCGTGACAAGTGTGTTCTA 59.645 45.455 0.41 0.00 38.41 2.10
2352 2855 1.133598 TCGTCGTGACAAGTGTGTTCT 59.866 47.619 0.41 0.00 38.41 3.01
2357 2860 0.458669 AGGTTCGTCGTGACAAGTGT 59.541 50.000 0.41 0.00 0.00 3.55
2358 2861 0.852777 CAGGTTCGTCGTGACAAGTG 59.147 55.000 0.41 0.00 34.28 3.16
2364 2874 1.080093 GCATCCAGGTTCGTCGTGA 60.080 57.895 0.00 0.00 34.28 4.35
2684 3194 1.205657 GAATAAATGCTCGGCGTCGA 58.794 50.000 13.29 13.29 43.86 4.20
2720 3243 0.539438 GCACAAACCAGGACCATGGA 60.539 55.000 21.47 0.00 43.57 3.41
2739 3262 3.491619 CCCACGTGATCTTCATCTGGTAG 60.492 52.174 19.30 0.00 0.00 3.18
2838 3361 0.520404 CACTGCACATGTCCTTCTGC 59.480 55.000 0.00 0.00 0.00 4.26
2880 3403 8.148351 ACAATGTGCTACGTATAATCTTGGTAT 58.852 33.333 0.00 0.00 0.00 2.73
2899 3422 2.604914 GAGATGCACGGAGTACAATGTG 59.395 50.000 0.00 1.22 41.61 3.21
2902 3425 3.610040 TTGAGATGCACGGAGTACAAT 57.390 42.857 0.00 0.00 41.61 2.71
2903 3426 3.394674 TTTGAGATGCACGGAGTACAA 57.605 42.857 0.00 0.00 41.61 2.41
2905 3428 3.585862 TCTTTTGAGATGCACGGAGTAC 58.414 45.455 0.00 0.00 41.61 2.73
2908 3431 4.488126 TTTTCTTTTGAGATGCACGGAG 57.512 40.909 0.00 0.00 0.00 4.63
2909 3432 4.578516 TCTTTTTCTTTTGAGATGCACGGA 59.421 37.500 0.00 0.00 0.00 4.69
2910 3433 4.858935 TCTTTTTCTTTTGAGATGCACGG 58.141 39.130 0.00 0.00 0.00 4.94
2911 3434 6.810888 TTTCTTTTTCTTTTGAGATGCACG 57.189 33.333 0.00 0.00 0.00 5.34
2935 3608 7.334858 TCCTTGTACAATGTACAGCATAATCA 58.665 34.615 23.11 7.97 36.67 2.57
2937 3610 8.046708 TCTTCCTTGTACAATGTACAGCATAAT 58.953 33.333 23.11 0.00 36.67 1.28
2938 3611 7.390823 TCTTCCTTGTACAATGTACAGCATAA 58.609 34.615 23.11 15.62 36.67 1.90
2940 3613 5.804639 TCTTCCTTGTACAATGTACAGCAT 58.195 37.500 23.11 0.00 40.03 3.79
2941 3614 5.221641 ACTCTTCCTTGTACAATGTACAGCA 60.222 40.000 23.11 11.23 0.00 4.41
2942 3615 5.238583 ACTCTTCCTTGTACAATGTACAGC 58.761 41.667 23.11 0.00 0.00 4.40
2943 3616 6.929049 TCAACTCTTCCTTGTACAATGTACAG 59.071 38.462 23.11 17.27 0.00 2.74
2944 3617 6.704493 GTCAACTCTTCCTTGTACAATGTACA 59.296 38.462 20.99 20.99 0.00 2.90
2945 3618 6.147328 GGTCAACTCTTCCTTGTACAATGTAC 59.853 42.308 16.05 16.05 0.00 2.90
2946 3619 6.042781 AGGTCAACTCTTCCTTGTACAATGTA 59.957 38.462 9.13 0.00 0.00 2.29
2947 3620 5.063880 GGTCAACTCTTCCTTGTACAATGT 58.936 41.667 9.13 0.00 0.00 2.71
2948 3621 5.308825 AGGTCAACTCTTCCTTGTACAATG 58.691 41.667 9.13 6.65 0.00 2.82
2956 3629 4.455606 CAACTGAAGGTCAACTCTTCCTT 58.544 43.478 0.00 0.00 43.20 3.36
2987 3660 3.204827 GCACGCATACAGGCAGGG 61.205 66.667 0.00 0.00 0.00 4.45
2988 3661 2.436469 TGCACGCATACAGGCAGG 60.436 61.111 0.00 0.00 0.00 4.85
2989 3662 3.095911 CTGCACGCATACAGGCAG 58.904 61.111 0.00 0.00 46.47 4.85
3050 3723 2.040009 AATGGATGTAGCCGGGGTCG 62.040 60.000 2.18 0.00 0.00 4.79
3109 3782 3.322254 ACTTCACCTTCCATAGCGATAGG 59.678 47.826 0.00 0.00 0.00 2.57
3134 3807 6.224665 AGCACGGTATTGTAGTAATGGTAA 57.775 37.500 0.00 0.00 0.00 2.85
3141 3814 4.381185 CCAGACAAGCACGGTATTGTAGTA 60.381 45.833 9.96 0.00 39.66 1.82
3150 3823 4.643387 GCCCCAGACAAGCACGGT 62.643 66.667 0.00 0.00 0.00 4.83
3182 3855 4.142381 GCTTTGCCTTCGATTTTACTGGAT 60.142 41.667 0.00 0.00 0.00 3.41
3183 3856 3.190535 GCTTTGCCTTCGATTTTACTGGA 59.809 43.478 0.00 0.00 0.00 3.86
3184 3857 3.057596 TGCTTTGCCTTCGATTTTACTGG 60.058 43.478 0.00 0.00 0.00 4.00
3185 3858 4.159377 TGCTTTGCCTTCGATTTTACTG 57.841 40.909 0.00 0.00 0.00 2.74
3186 3859 3.821033 ACTGCTTTGCCTTCGATTTTACT 59.179 39.130 0.00 0.00 0.00 2.24
3193 3866 1.509644 CTGCACTGCTTTGCCTTCGA 61.510 55.000 1.98 0.00 42.25 3.71
3194 3867 1.081641 CTGCACTGCTTTGCCTTCG 60.082 57.895 1.98 0.00 42.25 3.79
3212 3885 4.577693 TCCATGAAGCATCTTAATCAGCAC 59.422 41.667 0.00 0.00 0.00 4.40
3214 3887 5.961396 ATCCATGAAGCATCTTAATCAGC 57.039 39.130 0.00 0.00 0.00 4.26
3215 3888 8.388853 CGATTATCCATGAAGCATCTTAATCAG 58.611 37.037 0.00 0.00 0.00 2.90
3216 3889 7.335171 CCGATTATCCATGAAGCATCTTAATCA 59.665 37.037 0.00 0.00 0.00 2.57
3262 3935 8.742777 AGAATCACTGCACACACAAAATATAAT 58.257 29.630 0.00 0.00 0.00 1.28
3263 3936 8.022550 CAGAATCACTGCACACACAAAATATAA 58.977 33.333 0.00 0.00 39.86 0.98
3358 4031 0.468226 TTCCCCATGTCGCCATAGAC 59.532 55.000 0.00 0.00 41.30 2.59
3449 4475 9.776158 CATCTCACATAGAAACGTAGTATATCC 57.224 37.037 0.00 0.00 36.88 2.59
3481 4508 2.821546 CATTAGCATCGGAAAGGACGA 58.178 47.619 0.00 0.00 45.19 4.20
3482 4509 1.261619 GCATTAGCATCGGAAAGGACG 59.738 52.381 0.00 0.00 41.58 4.79
3483 4510 1.604278 GGCATTAGCATCGGAAAGGAC 59.396 52.381 0.00 0.00 44.61 3.85
3658 4685 3.746949 GAGCGGCCTGATGAGGTGG 62.747 68.421 0.00 0.00 42.15 4.61
3706 4733 2.738521 CACCTCTCGTGGTTGCCG 60.739 66.667 0.00 0.00 38.45 5.69
3738 4765 3.423154 GCGAGGTTGGCGTTCTGG 61.423 66.667 0.00 0.00 0.00 3.86
3747 4774 2.456119 GGTGATGAGCGCGAGGTTG 61.456 63.158 12.10 0.00 45.11 3.77
3748 4775 2.125512 GGTGATGAGCGCGAGGTT 60.126 61.111 12.10 0.00 45.11 3.50
3760 4787 1.153086 GAGGCTGATTGGCGGTGAT 60.153 57.895 0.00 0.00 46.88 3.06
3774 4801 2.250237 GCCATTGCTAGCTCGAGGC 61.250 63.158 17.23 18.74 36.34 4.70
3775 4802 1.596477 GGCCATTGCTAGCTCGAGG 60.596 63.158 17.23 13.19 37.74 4.63
3785 4812 3.357079 CTATCCGGCGGCCATTGC 61.357 66.667 23.83 0.00 0.00 3.56
3790 4817 4.849310 TGTTGCTATCCGGCGGCC 62.849 66.667 23.83 9.54 34.52 6.13
3791 4818 2.591715 ATGTTGCTATCCGGCGGC 60.592 61.111 23.83 10.34 34.52 6.53
3792 4819 1.961277 GGATGTTGCTATCCGGCGG 60.961 63.158 22.51 22.51 37.48 6.13
3793 4820 3.642755 GGATGTTGCTATCCGGCG 58.357 61.111 0.00 0.00 37.48 6.46
3797 4824 3.388024 TGGTACTGAGGATGTTGCTATCC 59.612 47.826 7.00 7.00 45.71 2.59
3798 4825 4.672587 TGGTACTGAGGATGTTGCTATC 57.327 45.455 0.00 0.00 0.00 2.08
3799 4826 4.655649 TCATGGTACTGAGGATGTTGCTAT 59.344 41.667 0.00 0.00 0.00 2.97
3800 4827 4.030216 TCATGGTACTGAGGATGTTGCTA 58.970 43.478 0.00 0.00 0.00 3.49
3801 4828 2.840038 TCATGGTACTGAGGATGTTGCT 59.160 45.455 0.00 0.00 0.00 3.91
3802 4829 3.201290 CTCATGGTACTGAGGATGTTGC 58.799 50.000 4.56 0.00 39.20 4.17
3803 4830 3.118482 AGCTCATGGTACTGAGGATGTTG 60.118 47.826 12.58 0.00 42.42 3.33
3804 4831 3.110705 AGCTCATGGTACTGAGGATGTT 58.889 45.455 12.58 0.00 42.42 2.71
3805 4832 2.433604 CAGCTCATGGTACTGAGGATGT 59.566 50.000 12.58 0.00 42.42 3.06
3806 4833 2.697229 TCAGCTCATGGTACTGAGGATG 59.303 50.000 12.58 4.64 42.42 3.51
3807 4834 3.037851 TCAGCTCATGGTACTGAGGAT 57.962 47.619 12.58 0.00 42.42 3.24
3808 4835 2.532250 TCAGCTCATGGTACTGAGGA 57.468 50.000 12.58 1.95 42.42 3.71
3809 4836 2.697229 TCATCAGCTCATGGTACTGAGG 59.303 50.000 12.58 14.81 43.25 3.86
3810 4837 4.370049 CTTCATCAGCTCATGGTACTGAG 58.630 47.826 15.27 7.58 43.25 3.35
3811 4838 3.133542 CCTTCATCAGCTCATGGTACTGA 59.866 47.826 13.28 13.28 44.06 3.41
3812 4839 3.133542 TCCTTCATCAGCTCATGGTACTG 59.866 47.826 0.00 0.00 0.00 2.74
3813 4840 3.378512 TCCTTCATCAGCTCATGGTACT 58.621 45.455 0.00 0.00 0.00 2.73
3814 4841 3.827008 TCCTTCATCAGCTCATGGTAC 57.173 47.619 0.00 0.00 0.00 3.34
3815 4842 4.842531 TTTCCTTCATCAGCTCATGGTA 57.157 40.909 0.00 0.00 0.00 3.25
3816 4843 3.726557 TTTCCTTCATCAGCTCATGGT 57.273 42.857 0.00 0.00 0.00 3.55
3817 4844 3.318275 CCATTTCCTTCATCAGCTCATGG 59.682 47.826 0.00 0.00 0.00 3.66
3818 4845 3.243434 GCCATTTCCTTCATCAGCTCATG 60.243 47.826 0.00 0.00 0.00 3.07
3819 4846 2.957006 GCCATTTCCTTCATCAGCTCAT 59.043 45.455 0.00 0.00 0.00 2.90
3820 4847 2.372264 GCCATTTCCTTCATCAGCTCA 58.628 47.619 0.00 0.00 0.00 4.26
3821 4848 1.332997 CGCCATTTCCTTCATCAGCTC 59.667 52.381 0.00 0.00 0.00 4.09
3839 4866 1.266989 CCCTGGAAAAGAGAAACACGC 59.733 52.381 0.00 0.00 0.00 5.34
3840 4867 2.846193 TCCCTGGAAAAGAGAAACACG 58.154 47.619 0.00 0.00 0.00 4.49
3841 4868 6.625960 GCATAATCCCTGGAAAAGAGAAACAC 60.626 42.308 0.00 0.00 0.00 3.32
3845 4872 5.191727 TGCATAATCCCTGGAAAAGAGAA 57.808 39.130 0.00 0.00 0.00 2.87
3848 4875 3.373001 CCCTGCATAATCCCTGGAAAAGA 60.373 47.826 0.00 0.00 0.00 2.52
3850 4877 2.314549 ACCCTGCATAATCCCTGGAAAA 59.685 45.455 0.00 0.00 0.00 2.29
3921 4948 2.134789 TGGGGAAGTAGGTCTCGTAC 57.865 55.000 0.00 0.00 0.00 3.67
3928 4955 2.375345 CGGGCATGGGGAAGTAGGT 61.375 63.158 0.00 0.00 0.00 3.08
4029 5056 1.602165 CGTACTTGCTCCGACTTGTGT 60.602 52.381 0.00 0.00 0.00 3.72
4030 5057 1.060713 CGTACTTGCTCCGACTTGTG 58.939 55.000 0.00 0.00 0.00 3.33
4032 5059 1.719780 GAACGTACTTGCTCCGACTTG 59.280 52.381 0.00 0.00 0.00 3.16
4048 5075 3.607078 GCTGTCTGCTGGTAAAAAGAACG 60.607 47.826 0.00 0.00 38.95 3.95
4076 5103 3.188460 GCAAAGTCTGAAATAGGAACGCA 59.812 43.478 0.00 0.00 0.00 5.24
4079 5106 4.457257 AGCTGCAAAGTCTGAAATAGGAAC 59.543 41.667 1.02 0.00 0.00 3.62
4123 5152 2.357034 AAGGCGTCGACGTTGCAT 60.357 55.556 35.48 16.90 42.22 3.96
4126 5155 2.235016 ACACAAGGCGTCGACGTTG 61.235 57.895 35.48 31.80 42.22 4.10
4130 5159 1.654105 CTATTCACACAAGGCGTCGAC 59.346 52.381 5.18 5.18 0.00 4.20
4135 5164 5.234329 CCAGTTATACTATTCACACAAGGCG 59.766 44.000 0.00 0.00 0.00 5.52
4216 5245 5.379827 GTTTCGATTTTAAGAACTCACCCG 58.620 41.667 0.00 0.00 0.00 5.28
4246 5276 5.714806 TGGTTCAGAAAAGAAAAGGACAACT 59.285 36.000 0.00 0.00 0.00 3.16
4247 5277 5.961272 TGGTTCAGAAAAGAAAAGGACAAC 58.039 37.500 0.00 0.00 0.00 3.32
4249 5279 5.714806 ACTTGGTTCAGAAAAGAAAAGGACA 59.285 36.000 2.16 0.00 0.00 4.02
4250 5280 6.036470 CACTTGGTTCAGAAAAGAAAAGGAC 58.964 40.000 2.16 0.00 0.00 3.85
4252 5282 6.036470 GTCACTTGGTTCAGAAAAGAAAAGG 58.964 40.000 2.16 0.00 0.00 3.11
4253 5283 6.856895 AGTCACTTGGTTCAGAAAAGAAAAG 58.143 36.000 2.16 0.00 0.00 2.27
4258 5288 5.567138 ACAAGTCACTTGGTTCAGAAAAG 57.433 39.130 21.71 0.00 44.81 2.27
4286 5316 2.666190 GCAGGCACGACAGCAAGA 60.666 61.111 0.00 0.00 35.83 3.02
4291 5321 1.069906 GTTTACTTGCAGGCACGACAG 60.070 52.381 4.67 0.00 0.00 3.51
4294 5324 0.941542 GTGTTTACTTGCAGGCACGA 59.058 50.000 4.67 0.00 0.00 4.35
4308 5344 4.141756 TGGTCATCAAAATGCAAGGTGTTT 60.142 37.500 0.00 0.00 32.58 2.83
4332 5368 2.742428 ACATTGGTCTATGCCTGCAT 57.258 45.000 9.87 9.87 40.19 3.96
4368 5404 1.418637 GGGTCCACGCTGGGAATTATA 59.581 52.381 0.00 0.00 39.05 0.98
4390 5426 2.301346 CTCCACAGAGGCAACAAAGTT 58.699 47.619 0.00 0.00 36.39 2.66
4424 5460 5.639931 GTGTGATCTTCTTCTACCTTGTTCC 59.360 44.000 0.00 0.00 0.00 3.62
4425 5461 6.367422 CAGTGTGATCTTCTTCTACCTTGTTC 59.633 42.308 0.00 0.00 0.00 3.18
4435 5471 2.412065 GCGTTGCAGTGTGATCTTCTTC 60.412 50.000 0.00 0.00 0.00 2.87
4436 5472 1.532868 GCGTTGCAGTGTGATCTTCTT 59.467 47.619 0.00 0.00 0.00 2.52
4557 5599 0.958091 TGCACTTGCCATTGTACACC 59.042 50.000 0.00 0.00 41.18 4.16
4560 5602 1.470098 CCTCTGCACTTGCCATTGTAC 59.530 52.381 0.00 0.00 41.18 2.90
4599 5641 2.104967 TCGTAGGTGTCGATCCCATTT 58.895 47.619 6.16 0.00 32.30 2.32
4601 5643 1.996798 ATCGTAGGTGTCGATCCCAT 58.003 50.000 6.16 0.00 43.12 4.00
4605 5647 5.292671 TGCTATTATCGTAGGTGTCGATC 57.707 43.478 4.16 0.00 44.96 3.69
4682 5724 5.303078 TGAGCTCTTACAAACAGAGAGAAGT 59.697 40.000 16.19 0.00 40.39 3.01
4693 5735 5.804692 TTCGTTGTTTGAGCTCTTACAAA 57.195 34.783 25.44 13.12 32.84 2.83
4739 5781 7.496529 TTATGAATTTCCAATCATCTCCGAC 57.503 36.000 0.00 0.00 37.46 4.79
4787 5843 2.304180 CAAGAGGTTGTCAGAGGACCAT 59.696 50.000 0.00 0.00 43.65 3.55
4865 5922 2.045438 TGCACCCTGGCATAACCG 60.045 61.111 0.00 0.00 43.94 4.44
4901 5958 3.074538 AGGTGAAGCTTACCTGAACCAAT 59.925 43.478 20.25 1.97 46.48 3.16
4925 5982 5.380900 ACTTCCCAAGAGAAGAAAGAAAGG 58.619 41.667 8.21 0.00 45.08 3.11
4930 5987 7.568199 TGTAAAACTTCCCAAGAGAAGAAAG 57.432 36.000 8.21 0.00 45.08 2.62
4952 6009 5.938125 AGCCTCAATTGTAAACTTCGTATGT 59.062 36.000 5.13 0.00 0.00 2.29
4964 6021 4.640771 AGGAAACTGAGCCTCAATTGTA 57.359 40.909 5.13 0.00 41.13 2.41
4973 6030 1.878953 TTTGTCGAGGAAACTGAGCC 58.121 50.000 0.00 0.00 44.43 4.70
5001 6058 4.070716 ACTGAAGAAAACAGAGCATCAGG 58.929 43.478 0.00 0.00 37.67 3.86
5040 6097 0.760945 ACTGGTCCCGGATCTCCATC 60.761 60.000 0.73 0.00 35.14 3.51
5103 6160 1.516365 TATCTGCCTCGAGCCGTAGC 61.516 60.000 6.99 5.20 42.71 3.58
5108 6165 1.337635 CCTTCATATCTGCCTCGAGCC 60.338 57.143 6.99 0.00 42.71 4.70
5180 6243 0.512518 TGCAATTCAGCGTTCGTCTG 59.487 50.000 9.18 9.18 37.31 3.51
5212 6275 5.163683 ACAGTAACCGTACACAGCTATACAG 60.164 44.000 0.00 0.00 32.12 2.74
5248 6311 5.771666 TGAGCAGAAAGGAAGACATTTTGAT 59.228 36.000 0.00 0.00 30.08 2.57
5249 6312 5.132502 TGAGCAGAAAGGAAGACATTTTGA 58.867 37.500 0.00 0.00 30.08 2.69
5258 6321 8.684520 AGATTTCATATTTGAGCAGAAAGGAAG 58.315 33.333 0.00 0.00 32.45 3.46
5267 6330 9.187996 TGGTTGATAAGATTTCATATTTGAGCA 57.812 29.630 0.00 0.00 32.27 4.26
5296 6384 1.417517 TGCCATCCACTCGCAATCTAT 59.582 47.619 0.00 0.00 0.00 1.98
5304 6392 1.069022 CAAACTTGTGCCATCCACTCG 60.069 52.381 0.00 0.00 44.92 4.18
5339 6427 8.285394 CGAATATGTGAGAAATATTTCACTGGG 58.715 37.037 26.02 5.04 43.15 4.45
5372 6460 7.410991 AGGAAGGGTGCTATACTTATTGTTTT 58.589 34.615 0.00 0.00 0.00 2.43
5375 6463 5.905913 AGAGGAAGGGTGCTATACTTATTGT 59.094 40.000 0.00 0.00 0.00 2.71
5379 6467 5.138758 TGAGAGGAAGGGTGCTATACTTA 57.861 43.478 0.00 0.00 0.00 2.24
5395 6483 3.087031 ACCATGCAAGTTCAATGAGAGG 58.913 45.455 0.00 0.00 0.00 3.69
5402 6490 7.517614 TTCTACATAAACCATGCAAGTTCAA 57.482 32.000 6.00 0.00 38.29 2.69
5415 6503 9.338291 CATGCATGCATCTTATTCTACATAAAC 57.662 33.333 30.07 0.00 33.90 2.01
5417 6505 8.724229 GTCATGCATGCATCTTATTCTACATAA 58.276 33.333 30.07 0.00 33.90 1.90
5418 6506 7.335171 GGTCATGCATGCATCTTATTCTACATA 59.665 37.037 30.07 0.00 33.90 2.29
5439 6527 6.394345 AAAAGAGAGGGAATTAGTGGTCAT 57.606 37.500 0.00 0.00 0.00 3.06
5440 6528 5.843019 AAAAGAGAGGGAATTAGTGGTCA 57.157 39.130 0.00 0.00 0.00 4.02
5441 6529 7.797062 AGATAAAAGAGAGGGAATTAGTGGTC 58.203 38.462 0.00 0.00 0.00 4.02
5442 6530 7.625682 AGAGATAAAAGAGAGGGAATTAGTGGT 59.374 37.037 0.00 0.00 0.00 4.16
5443 6531 8.028652 AGAGATAAAAGAGAGGGAATTAGTGG 57.971 38.462 0.00 0.00 0.00 4.00
5473 6960 6.839124 TTTGAGTCTCATGCCACATTTAAT 57.161 33.333 2.68 0.00 0.00 1.40
5485 6972 8.398665 GTTGAGTTAAAGTGTTTTGAGTCTCAT 58.601 33.333 2.68 0.00 34.81 2.90
5497 6984 9.662947 ACTTTAAGTACAGTTGAGTTAAAGTGT 57.337 29.630 19.61 3.20 45.49 3.55
5499 6986 9.880157 TCACTTTAAGTACAGTTGAGTTAAAGT 57.120 29.630 16.78 16.78 46.98 2.66
5511 6998 7.921745 GGAGTATTAGGCTCACTTTAAGTACAG 59.078 40.741 0.00 0.00 34.83 2.74
5513 7000 8.009622 AGGAGTATTAGGCTCACTTTAAGTAC 57.990 38.462 0.00 0.00 34.83 2.73
5556 9966 6.426633 CCGGTTTAAAAGGCTCATTTGAAAAT 59.573 34.615 0.00 0.00 26.89 1.82
5560 9970 4.145807 TCCGGTTTAAAAGGCTCATTTGA 58.854 39.130 0.00 0.00 0.00 2.69
5561 9971 4.513198 TCCGGTTTAAAAGGCTCATTTG 57.487 40.909 0.00 0.00 0.00 2.32
5562 9972 5.510690 CCTTTCCGGTTTAAAAGGCTCATTT 60.511 40.000 16.89 0.00 43.59 2.32
5566 9976 3.570926 CCTTTCCGGTTTAAAAGGCTC 57.429 47.619 16.89 0.00 43.59 4.70
5580 9990 4.455606 CACAATCATACTCCCTCCTTTCC 58.544 47.826 0.00 0.00 0.00 3.13
5588 9998 4.408182 ACTACAGCACAATCATACTCCC 57.592 45.455 0.00 0.00 0.00 4.30
5603 10013 6.700020 CGAAAATCTGTGATGCTAACTACAG 58.300 40.000 0.00 0.00 41.34 2.74
5604 10014 5.063438 GCGAAAATCTGTGATGCTAACTACA 59.937 40.000 0.00 0.00 0.00 2.74
5605 10015 5.063438 TGCGAAAATCTGTGATGCTAACTAC 59.937 40.000 0.00 0.00 0.00 2.73
5606 10016 5.175127 TGCGAAAATCTGTGATGCTAACTA 58.825 37.500 0.00 0.00 0.00 2.24
5619 10029 4.675510 CACATAAATGCCTGCGAAAATCT 58.324 39.130 0.00 0.00 0.00 2.40
5625 10035 1.391577 ATGCACATAAATGCCTGCGA 58.608 45.000 0.00 0.00 45.50 5.10
5630 10040 8.918658 CAGAAATATACAATGCACATAAATGCC 58.081 33.333 0.00 0.00 45.50 4.40
5670 10080 4.399934 GGACATGCCCTAATTCGGTAAAAA 59.600 41.667 0.00 0.00 0.00 1.94
5671 10081 3.949113 GGACATGCCCTAATTCGGTAAAA 59.051 43.478 0.00 0.00 0.00 1.52
5672 10082 3.054287 TGGACATGCCCTAATTCGGTAAA 60.054 43.478 0.00 0.00 34.97 2.01
5673 10083 2.506231 TGGACATGCCCTAATTCGGTAA 59.494 45.455 0.00 0.00 34.97 2.85
5674 10084 2.120312 TGGACATGCCCTAATTCGGTA 58.880 47.619 0.00 0.00 34.97 4.02
5687 10375 0.664761 GATGGATGGCGTTGGACATG 59.335 55.000 0.00 0.00 43.76 3.21
5689 10377 0.037447 TTGATGGATGGCGTTGGACA 59.963 50.000 0.00 0.00 34.03 4.02
5719 10407 2.311124 AGAATTCGAACATCCGGACC 57.689 50.000 6.12 0.00 0.00 4.46
5727 10415 6.512741 GCTTCTGGTTTGTAAGAATTCGAACA 60.513 38.462 0.00 10.68 32.20 3.18
5730 10418 5.060506 TGCTTCTGGTTTGTAAGAATTCGA 58.939 37.500 0.00 0.00 32.20 3.71
5738 10426 3.027412 TGGCTTTGCTTCTGGTTTGTAA 58.973 40.909 0.00 0.00 0.00 2.41
5740 10428 1.484038 TGGCTTTGCTTCTGGTTTGT 58.516 45.000 0.00 0.00 0.00 2.83
5762 10450 2.758423 GTCTGGACACCCACAAAACTTT 59.242 45.455 0.00 0.00 37.58 2.66
5780 10468 0.320374 TTGCAGGAATTCGGACGTCT 59.680 50.000 16.46 0.00 0.00 4.18
5806 10494 1.338020 CAAAACTCCTTCGGCTTTGCT 59.662 47.619 0.00 0.00 0.00 3.91
5811 10499 0.537371 CCCACAAAACTCCTTCGGCT 60.537 55.000 0.00 0.00 0.00 5.52
5821 10509 0.382873 GGTCCGAACACCCACAAAAC 59.617 55.000 0.00 0.00 0.00 2.43
5854 10542 0.253894 TCGGTCGAGGGTATCAGACA 59.746 55.000 0.00 0.00 34.90 3.41
5858 10546 0.322726 TGTGTCGGTCGAGGGTATCA 60.323 55.000 0.00 0.00 0.00 2.15
5866 10554 3.618750 GGGGGTTGTGTCGGTCGA 61.619 66.667 0.00 0.00 0.00 4.20
5888 10576 2.472695 TGGTTGGATCGGAACAAGAG 57.527 50.000 8.13 0.00 0.00 2.85
5901 10589 1.824852 GGGGAGCAAAGTAATGGTTGG 59.175 52.381 0.00 0.00 0.00 3.77
5907 10595 0.679960 GGCGTGGGGAGCAAAGTAAT 60.680 55.000 0.00 0.00 36.08 1.89
5913 10601 2.992817 AAATGTGGCGTGGGGAGCAA 62.993 55.000 0.00 0.00 36.08 3.91
5984 10672 1.405105 GCACCAGTGTGAATGTTGTGT 59.595 47.619 0.00 0.00 45.76 3.72
5988 10676 1.032014 GGTGCACCAGTGTGAATGTT 58.968 50.000 31.23 0.00 45.76 2.71
5990 10678 0.594602 CAGGTGCACCAGTGTGAATG 59.405 55.000 36.39 19.71 45.76 2.67
6006 10694 3.691744 GAGCAGACGCCTCGACAGG 62.692 68.421 0.00 0.00 43.82 4.00
6056 10744 1.431440 GCATTAACGCGGCATGGAA 59.569 52.632 12.47 0.00 0.00 3.53
6060 10748 3.582120 CCGGCATTAACGCGGCAT 61.582 61.111 12.47 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.