Multiple sequence alignment - TraesCS3A01G328600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G328600 chr3A 100.000 3912 0 0 1 3912 574014092 574010181 0.000000e+00 7225.0
1 TraesCS3A01G328600 chr3B 93.290 3979 179 27 1 3912 571300950 571296993 0.000000e+00 5788.0
2 TraesCS3A01G328600 chr3D 93.166 2912 107 28 836 3693 435294940 435292067 0.000000e+00 4191.0
3 TraesCS3A01G328600 chr3D 95.426 809 37 0 1 809 435296285 435295477 0.000000e+00 1290.0
4 TraesCS3A01G328600 chr3D 94.624 186 4 3 3732 3912 435292068 435291884 2.300000e-72 283.0
5 TraesCS3A01G328600 chr1D 77.254 488 91 14 2739 3211 343887457 343887939 6.440000e-68 268.0
6 TraesCS3A01G328600 chr1B 77.207 487 93 13 2739 3211 461297109 461297591 6.440000e-68 268.0
7 TraesCS3A01G328600 chr1B 80.000 260 36 10 2739 2985 461236920 461237176 1.120000e-40 178.0
8 TraesCS3A01G328600 chr2B 95.349 43 1 1 3093 3135 794623420 794623461 2.520000e-07 67.6
9 TraesCS3A01G328600 chr2B 91.667 48 3 1 3086 3132 796837388 796837341 9.070000e-07 65.8
10 TraesCS3A01G328600 chr2A 79.245 106 15 6 3031 3132 764149110 764149008 2.520000e-07 67.6
11 TraesCS3A01G328600 chr5D 93.023 43 3 0 1644 1686 418624033 418623991 3.260000e-06 63.9
12 TraesCS3A01G328600 chrUn 87.755 49 4 2 2639 2686 70995391 70995344 5.460000e-04 56.5
13 TraesCS3A01G328600 chr6B 80.822 73 12 2 2615 2686 2198812 2198883 5.460000e-04 56.5
14 TraesCS3A01G328600 chr6B 100.000 28 0 0 2659 2686 945058 945085 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G328600 chr3A 574010181 574014092 3911 True 7225.000000 7225 100.000000 1 3912 1 chr3A.!!$R1 3911
1 TraesCS3A01G328600 chr3B 571296993 571300950 3957 True 5788.000000 5788 93.290000 1 3912 1 chr3B.!!$R1 3911
2 TraesCS3A01G328600 chr3D 435291884 435296285 4401 True 1921.333333 4191 94.405333 1 3912 3 chr3D.!!$R1 3911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1510 0.824109 CAAGTCTCCCCACGAGCATA 59.176 55.0 0.0 0.0 38.62 3.14 F
2402 2930 0.240945 CCTCCATGACAAACCAACGC 59.759 55.0 0.0 0.0 0.00 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2539 3067 0.240145 TGCGGTAACTCTCAGTGTCG 59.760 55.000 0.0 0.0 0.0 4.35 R
3768 4353 1.387084 GACTCGACTTCGTTCATGTGC 59.613 52.381 0.0 0.0 40.8 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.501723 GGCCAGTATGAACTCCTCTTCA 59.498 50.000 0.00 0.00 39.69 3.02
66 67 3.969287 AGTATGCTCTGCAAGACTTCA 57.031 42.857 0.00 0.00 43.62 3.02
75 76 1.061799 GCAAGACTTCATTGCGCACG 61.062 55.000 11.12 4.17 43.15 5.34
296 297 2.095466 CGAATCCGTAGATCCTGCTCTC 60.095 54.545 0.00 0.00 0.00 3.20
306 307 0.906756 TCCTGCTCTCCTCAACCCAG 60.907 60.000 0.00 0.00 0.00 4.45
313 314 2.763448 CTCTCCTCAACCCAGGAAGTAG 59.237 54.545 0.00 0.00 42.35 2.57
350 351 2.348998 GGTGGTGGTGCTCTCCTG 59.651 66.667 0.00 0.00 0.00 3.86
352 353 2.527624 TGGTGGTGCTCTCCTGCT 60.528 61.111 0.00 0.00 0.00 4.24
357 358 1.378250 GGTGCTCTCCTGCTGCAAT 60.378 57.895 3.02 0.00 38.50 3.56
472 473 1.686110 GCTTCGGAGGGGGAGAAGA 60.686 63.158 8.41 0.00 42.75 2.87
487 488 3.521529 AAGAAGCAGCTCCGCGTGT 62.522 57.895 4.92 0.00 36.85 4.49
506 507 4.947147 TGGCCGGTTGGTGAGCAC 62.947 66.667 1.90 0.00 37.67 4.40
688 689 4.608445 CGAACTTTCTAACCAGAAACTGCG 60.608 45.833 0.00 0.00 44.13 5.18
695 696 1.973281 CCAGAAACTGCGCCACCAT 60.973 57.895 4.18 0.00 0.00 3.55
769 770 6.983906 AGTTTGATGGAGGATTTTTCAGTT 57.016 33.333 0.00 0.00 0.00 3.16
796 797 7.991084 TGATTGATGGATTCACAGGATAATC 57.009 36.000 0.00 0.00 32.84 1.75
833 835 2.420687 GGGAGCTAACTGAACCATGAGG 60.421 54.545 0.00 0.00 42.21 3.86
834 836 2.420687 GGAGCTAACTGAACCATGAGGG 60.421 54.545 0.00 0.00 44.81 4.30
869 1380 1.972795 ACAGTGACGGCCCTTAACTTA 59.027 47.619 0.00 0.00 0.00 2.24
915 1434 1.066430 AGACGCGTACATGTCCCATTT 60.066 47.619 13.97 0.00 35.71 2.32
942 1461 5.054390 TCATTAAGAAAACCAATGACGCC 57.946 39.130 0.00 0.00 34.58 5.68
991 1510 0.824109 CAAGTCTCCCCACGAGCATA 59.176 55.000 0.00 0.00 38.62 3.14
998 1517 1.968493 TCCCCACGAGCATAAGGATAC 59.032 52.381 0.00 0.00 0.00 2.24
1068 1587 1.514678 GGAACGGCATGAGCACACAA 61.515 55.000 0.00 0.00 44.61 3.33
1083 1602 0.754217 CACAATCCATGGGAGGCCTG 60.754 60.000 12.00 0.00 34.05 4.85
1084 1603 1.217057 ACAATCCATGGGAGGCCTGT 61.217 55.000 12.00 0.00 34.05 4.00
1307 1826 2.029288 CCTGCGACGATGCACAGTT 61.029 57.895 0.00 0.00 40.62 3.16
1350 1869 4.020617 CAGGTCTTCTGGGCGCCA 62.021 66.667 30.85 13.75 39.76 5.69
1368 1887 1.005215 CCATTCCTGCTCCTTCACCTT 59.995 52.381 0.00 0.00 0.00 3.50
1389 1908 2.066340 TGGTCAGGACACCATCACC 58.934 57.895 1.41 0.00 41.84 4.02
1392 1911 1.913262 TCAGGACACCATCACCGCT 60.913 57.895 0.00 0.00 0.00 5.52
1407 1926 3.012518 CACCGCTTTCTCCATTGAAGAT 58.987 45.455 0.00 0.00 0.00 2.40
1441 1960 2.745492 GTCACCTGCTCAGCCTGC 60.745 66.667 0.00 0.00 0.00 4.85
1466 1985 4.272748 GTCGCAGGTATGGTTAATTTCTCC 59.727 45.833 0.00 0.00 0.00 3.71
1519 2038 4.732784 TGCTCACTTCACAAACTTGAAAC 58.267 39.130 0.00 0.00 35.07 2.78
1713 2241 2.124570 GAGCGGCATGGTCACCAT 60.125 61.111 2.35 2.35 46.37 3.55
1802 2330 0.600557 GGCGGAGATCATCATCGAGT 59.399 55.000 4.16 0.00 33.75 4.18
1852 2380 1.476891 GCAATCACAGAGGAGACCGTA 59.523 52.381 0.00 0.00 0.00 4.02
2053 2581 4.776322 TCCAAGGCGGCGGTGATG 62.776 66.667 9.78 6.13 33.14 3.07
2089 2617 2.310233 CCTGTTCCGCTGTGTCACG 61.310 63.158 0.00 0.00 0.00 4.35
2200 2728 2.797156 CAATCTGTTATTCGGAGGAGCG 59.203 50.000 0.00 0.00 34.66 5.03
2264 2792 0.457443 CTGGACATACGCAGCTCTGA 59.543 55.000 0.29 0.00 0.00 3.27
2296 2824 0.250038 GCCATTCGCTGAGCCATCTA 60.250 55.000 0.00 0.00 0.00 1.98
2402 2930 0.240945 CCTCCATGACAAACCAACGC 59.759 55.000 0.00 0.00 0.00 4.84
2405 2933 0.950836 CCATGACAAACCAACGCTGA 59.049 50.000 0.00 0.00 0.00 4.26
2545 3073 1.153939 GCTCAGCATCGTCGACACT 60.154 57.895 17.16 3.95 0.00 3.55
2752 3283 4.457496 ATCAGCAGGGCGGTGTCG 62.457 66.667 0.00 0.00 43.83 4.35
2779 3310 2.982744 GCTTTTCCTGCTCGTGGCC 61.983 63.158 0.00 0.00 40.92 5.36
3074 3606 2.101575 CTACGCCGCGAGCAAGTA 59.898 61.111 21.79 7.35 44.04 2.24
3220 3752 9.863845 GAGCTAAACTAATTGTAGAGAAGAACT 57.136 33.333 0.00 0.00 0.00 3.01
3221 3753 9.646427 AGCTAAACTAATTGTAGAGAAGAACTG 57.354 33.333 0.00 0.00 0.00 3.16
3222 3754 9.640963 GCTAAACTAATTGTAGAGAAGAACTGA 57.359 33.333 0.00 0.00 0.00 3.41
3242 3780 6.171921 ACTGAGATTGAGAAGATCACCAAAG 58.828 40.000 0.00 0.00 37.77 2.77
3260 3798 3.537795 AAGGGTGGTGTACTCTGTAGA 57.462 47.619 0.00 0.00 39.94 2.59
3261 3799 2.805194 AGGGTGGTGTACTCTGTAGAC 58.195 52.381 0.00 0.00 39.16 2.59
3262 3800 2.379226 AGGGTGGTGTACTCTGTAGACT 59.621 50.000 0.00 0.00 39.16 3.24
3263 3801 2.492484 GGGTGGTGTACTCTGTAGACTG 59.508 54.545 0.00 0.00 0.00 3.51
3264 3802 3.155501 GGTGGTGTACTCTGTAGACTGT 58.844 50.000 0.00 0.00 0.00 3.55
3265 3803 4.330250 GGTGGTGTACTCTGTAGACTGTA 58.670 47.826 0.00 0.00 0.00 2.74
3266 3804 4.395542 GGTGGTGTACTCTGTAGACTGTAG 59.604 50.000 0.00 0.00 0.00 2.74
3295 3833 8.514594 TGTGCTATCTTCAAAAATTCTTAGGTG 58.485 33.333 0.00 0.00 0.00 4.00
3312 3850 3.081061 AGGTGATATGTGCGCTTTCAAA 58.919 40.909 9.73 0.00 0.00 2.69
3397 3935 2.635915 TCGGTTCCACTGAAACCAGTAT 59.364 45.455 0.00 0.00 42.60 2.12
3410 3948 2.941480 ACCAGTATAGTACGAGGTGGG 58.059 52.381 0.00 1.90 39.40 4.61
3418 3956 5.979288 ATAGTACGAGGTGGGAATATCAC 57.021 43.478 0.00 0.00 34.61 3.06
3491 4029 5.596836 TTTGCAAGTCTCCACAAAATTCT 57.403 34.783 0.00 0.00 0.00 2.40
3560 4122 7.660030 AATATACAATGAGAAACAAAGGGGG 57.340 36.000 0.00 0.00 0.00 5.40
3579 4164 2.099756 GGGCAAATCTAGCATGAACACC 59.900 50.000 0.00 0.00 0.00 4.16
3612 4197 8.877808 ATTGAATTTGTCTTCTTTGTTTCTCC 57.122 30.769 0.00 0.00 0.00 3.71
3637 4222 4.244862 GTGCATTTCGAATTTGGGATTGT 58.755 39.130 0.00 0.00 0.00 2.71
3746 4331 3.026630 AGCGGTTGTATCATGGTATCG 57.973 47.619 0.00 0.00 0.00 2.92
3791 4381 3.489416 CACATGAACGAAGTCGAGTCAAA 59.511 43.478 7.87 0.00 45.00 2.69
3866 4456 1.918609 CGACGACTAAGTTAAGCCAGC 59.081 52.381 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.158025 TCGGACTTGAAGAGGAGTTCATAC 59.842 45.833 0.00 0.00 36.34 2.39
30 31 2.170012 TACTTATGGCCCTCGGACTT 57.830 50.000 0.00 0.00 0.00 3.01
66 67 3.737172 GGCAAGGACGTGCGCAAT 61.737 61.111 14.00 2.37 45.91 3.56
143 144 1.300620 CTCGTGTTCAACAGCCCGA 60.301 57.895 0.00 0.00 0.00 5.14
171 172 2.892425 GGCATCGGGAAGACTGCG 60.892 66.667 0.00 0.00 35.60 5.18
279 280 0.847373 AGGAGAGCAGGATCTACGGA 59.153 55.000 0.00 0.00 35.10 4.69
296 297 1.555533 GGACTACTTCCTGGGTTGAGG 59.444 57.143 0.00 0.00 41.95 3.86
306 307 1.153549 CAGCCGCTGGACTACTTCC 60.154 63.158 12.93 0.00 46.13 3.46
341 342 2.044555 GCATTGCAGCAGGAGAGCA 61.045 57.895 3.15 0.00 36.85 4.26
342 343 1.749638 AGCATTGCAGCAGGAGAGC 60.750 57.895 11.91 0.00 36.85 4.09
343 344 2.099143 CAGCATTGCAGCAGGAGAG 58.901 57.895 11.91 0.00 36.85 3.20
487 488 2.909965 GCTCACCAACCGGCCAAA 60.910 61.111 0.00 0.00 34.57 3.28
526 527 5.344066 AGAGTGCATGTACGAACTCAATAG 58.656 41.667 8.36 0.00 41.22 1.73
656 657 5.543714 TGGTTAGAAAGTTCGTTGATAGCA 58.456 37.500 0.00 0.00 0.00 3.49
769 770 4.920999 TCCTGTGAATCCATCAATCAACA 58.079 39.130 0.00 0.00 40.50 3.33
833 835 2.435059 GTCTTGGTCTCTGCGCCC 60.435 66.667 4.18 0.00 0.00 6.13
834 836 1.739562 CTGTCTTGGTCTCTGCGCC 60.740 63.158 4.18 0.00 0.00 6.53
869 1380 5.241728 GGAAGAAGAAACAAGTTGGCACTAT 59.758 40.000 7.96 0.00 30.68 2.12
915 1434 7.328249 GCGTCATTGGTTTTCTTAATGATTTCA 59.672 33.333 0.00 0.00 41.31 2.69
998 1517 1.539929 GGCACTTCTCCAGGATCATCG 60.540 57.143 0.00 0.00 0.00 3.84
1068 1587 0.920763 TGAACAGGCCTCCCATGGAT 60.921 55.000 15.22 0.00 0.00 3.41
1083 1602 1.593006 CACTCGTTCCACACAGTGAAC 59.407 52.381 7.81 0.29 37.00 3.18
1084 1603 1.472552 CCACTCGTTCCACACAGTGAA 60.473 52.381 7.81 0.00 37.00 3.18
1291 1810 3.243128 CAACTGTGCATCGTCGCA 58.757 55.556 0.00 0.00 40.32 5.10
1307 1826 1.153066 TGGTTGCGGTTGAAGAGCA 60.153 52.632 0.00 0.00 39.33 4.26
1309 1828 1.841663 CGGTGGTTGCGGTTGAAGAG 61.842 60.000 0.00 0.00 0.00 2.85
1350 1869 1.005215 CCAAGGTGAAGGAGCAGGAAT 59.995 52.381 0.00 0.00 0.00 3.01
1374 1893 1.480212 AAGCGGTGATGGTGTCCTGA 61.480 55.000 0.00 0.00 0.00 3.86
1389 1908 4.566759 TCGTTATCTTCAATGGAGAAAGCG 59.433 41.667 0.00 0.73 0.00 4.68
1392 1911 5.734720 AGCTCGTTATCTTCAATGGAGAAA 58.265 37.500 0.00 0.00 0.00 2.52
1441 1960 4.876107 AGAAATTAACCATACCTGCGACAG 59.124 41.667 0.00 0.00 0.00 3.51
1466 1985 5.008415 ACTCTGTCTGAAGTGCAAAAGATTG 59.992 40.000 0.00 0.00 39.65 2.67
1519 2038 0.032540 GACAAGGCAAGGCTTGGTTG 59.967 55.000 31.25 14.44 35.10 3.77
1782 2310 0.108898 CTCGATGATGATCTCCGCCC 60.109 60.000 0.00 0.00 0.00 6.13
1852 2380 1.217244 GATGACCGTGGCGTAAGGT 59.783 57.895 0.00 0.00 44.30 3.50
2062 2590 2.588877 CGGAACAGGCGGCCATAG 60.589 66.667 23.09 12.99 0.00 2.23
2103 2631 1.935065 GAAGAAGACGCACGCTGTCG 61.935 60.000 7.86 0.00 41.24 4.35
2117 2645 3.820467 CCCTTGTGTAGCACATTGAAGAA 59.180 43.478 2.65 0.00 44.16 2.52
2200 2728 1.603931 GCAGAAACCTCCAAGCAAAGC 60.604 52.381 0.00 0.00 0.00 3.51
2264 2792 2.094675 CGAATGGCAGATGGAACCTTT 58.905 47.619 0.00 0.00 0.00 3.11
2389 2917 1.601903 GTGATCAGCGTTGGTTTGTCA 59.398 47.619 0.00 0.00 0.00 3.58
2405 2933 1.134580 CAGCGTCAGGATCTTGGTGAT 60.135 52.381 4.83 0.00 38.27 3.06
2421 2949 2.097038 CCTTTGAGTCCGAGCAGCG 61.097 63.158 0.00 0.00 40.47 5.18
2458 2986 3.384789 ACACGTCTATGTGCCAGATGTAT 59.615 43.478 2.22 0.00 43.74 2.29
2539 3067 0.240145 TGCGGTAACTCTCAGTGTCG 59.760 55.000 0.00 0.00 0.00 4.35
2545 3073 2.866460 GCTGAACTTGCGGTAACTCTCA 60.866 50.000 0.00 0.00 0.00 3.27
2752 3283 3.181516 CGAGCAGGAAAAGCATGTAGTTC 60.182 47.826 0.00 0.00 0.00 3.01
2830 3361 2.281484 TTCTTGGCCTCCGCACAC 60.281 61.111 3.32 0.00 36.38 3.82
2980 3512 2.979676 CAGCAGCGACTTGGCCAA 60.980 61.111 19.25 19.25 0.00 4.52
3074 3606 2.030562 CGTGGAAGTTGCTCCGGT 59.969 61.111 0.00 0.00 38.44 5.28
3162 3694 1.982660 CCTCTATCCGGTACTGCTCA 58.017 55.000 0.00 0.00 0.00 4.26
3220 3752 5.494724 CCTTTGGTGATCTTCTCAATCTCA 58.505 41.667 0.00 0.00 35.07 3.27
3221 3753 4.880696 CCCTTTGGTGATCTTCTCAATCTC 59.119 45.833 0.00 0.00 35.07 2.75
3222 3754 4.290722 ACCCTTTGGTGATCTTCTCAATCT 59.709 41.667 0.00 0.00 45.58 2.40
3223 3755 4.593956 ACCCTTTGGTGATCTTCTCAATC 58.406 43.478 0.00 0.00 45.58 2.67
3224 3756 4.664688 ACCCTTTGGTGATCTTCTCAAT 57.335 40.909 0.00 0.00 45.58 2.57
3242 3780 2.492484 CAGTCTACAGAGTACACCACCC 59.508 54.545 0.00 0.00 0.00 4.61
3260 3798 5.984695 TTGAAGATAGCACAGACTACAGT 57.015 39.130 0.00 0.00 0.00 3.55
3261 3799 7.658179 TTTTTGAAGATAGCACAGACTACAG 57.342 36.000 0.00 0.00 0.00 2.74
3262 3800 8.621532 AATTTTTGAAGATAGCACAGACTACA 57.378 30.769 0.00 0.00 0.00 2.74
3263 3801 8.940952 AGAATTTTTGAAGATAGCACAGACTAC 58.059 33.333 0.00 0.00 0.00 2.73
3264 3802 9.507329 AAGAATTTTTGAAGATAGCACAGACTA 57.493 29.630 0.00 0.00 0.00 2.59
3265 3803 7.992754 AGAATTTTTGAAGATAGCACAGACT 57.007 32.000 0.00 0.00 0.00 3.24
3266 3804 9.766277 CTAAGAATTTTTGAAGATAGCACAGAC 57.234 33.333 0.00 0.00 0.00 3.51
3295 3833 6.966632 TCAAGTTATTTGAAAGCGCACATATC 59.033 34.615 11.47 0.13 42.69 1.63
3312 3850 9.903682 CAAACTGACAAGATCAATTCAAGTTAT 57.096 29.630 0.00 0.00 36.69 1.89
3322 3860 6.461370 CCAATTCACCAAACTGACAAGATCAA 60.461 38.462 0.00 0.00 36.69 2.57
3397 3935 4.795469 TGTGATATTCCCACCTCGTACTA 58.205 43.478 0.00 0.00 33.80 1.82
3410 3948 7.495606 TGTGAAGTGTGGTATCATGTGATATTC 59.504 37.037 6.04 5.71 39.03 1.75
3418 3956 4.937015 TGTCATGTGAAGTGTGGTATCATG 59.063 41.667 0.00 0.00 34.46 3.07
3448 3986 5.520376 AATTTGAAGTTTGAGGAGTGGTG 57.480 39.130 0.00 0.00 0.00 4.17
3509 4071 7.014808 TCGAATTTGGGTCTGAAAATTTAAGGT 59.985 33.333 0.00 0.00 36.40 3.50
3556 4118 1.683385 GTTCATGCTAGATTTGCCCCC 59.317 52.381 0.00 0.00 0.00 5.40
3560 4122 4.644103 ATGGTGTTCATGCTAGATTTGC 57.356 40.909 0.00 0.00 34.22 3.68
3612 4197 1.984990 CCCAAATTCGAAATGCACACG 59.015 47.619 0.00 0.00 0.00 4.49
3724 4309 4.552355 CGATACCATGATACAACCGCTAA 58.448 43.478 0.00 0.00 0.00 3.09
3725 4310 3.613193 GCGATACCATGATACAACCGCTA 60.613 47.826 0.00 0.00 37.51 4.26
3726 4311 2.866460 GCGATACCATGATACAACCGCT 60.866 50.000 0.00 0.00 37.51 5.52
3728 4313 1.719246 CGCGATACCATGATACAACCG 59.281 52.381 0.00 0.00 0.00 4.44
3729 4314 3.021269 TCGCGATACCATGATACAACC 57.979 47.619 3.71 0.00 0.00 3.77
3768 4353 1.387084 GACTCGACTTCGTTCATGTGC 59.613 52.381 0.00 0.00 40.80 4.57
3771 4356 3.420544 CGTTTGACTCGACTTCGTTCATG 60.421 47.826 0.00 0.00 40.80 3.07
3773 4358 2.114056 CGTTTGACTCGACTTCGTTCA 58.886 47.619 0.00 0.60 40.80 3.18
3791 4381 2.098233 CGTATGGCGCTTGGTTCGT 61.098 57.895 7.64 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.