Multiple sequence alignment - TraesCS3A01G327600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G327600 chr3A 100.000 2771 0 0 1 2771 572566486 572569256 0.000000e+00 5118.0
1 TraesCS3A01G327600 chr3A 87.273 275 26 3 1975 2247 572567411 572567144 3.470000e-79 305.0
2 TraesCS3A01G327600 chr3A 90.260 154 15 0 73 226 640375785 640375938 4.680000e-48 202.0
3 TraesCS3A01G327600 chr3A 94.118 85 5 0 1685 1769 719109600 719109516 2.240000e-26 130.0
4 TraesCS3A01G327600 chr3B 88.762 1050 80 11 659 1686 763309097 763308064 0.000000e+00 1251.0
5 TraesCS3A01G327600 chr3B 91.327 565 40 3 1684 2247 763308019 763307463 0.000000e+00 763.0
6 TraesCS3A01G327600 chr3B 89.825 285 12 6 263 547 567154327 567154594 1.580000e-92 350.0
7 TraesCS3A01G327600 chr3B 87.220 313 28 7 2250 2561 567154906 567155207 2.040000e-91 346.0
8 TraesCS3A01G327600 chr3B 88.476 269 27 4 659 926 763307463 763307728 3.440000e-84 322.0
9 TraesCS3A01G327600 chr3B 89.407 236 8 5 263 498 567176923 567177141 5.840000e-72 281.0
10 TraesCS3A01G327600 chr3B 90.355 197 18 1 2576 2771 567169540 567169736 9.850000e-65 257.0
11 TraesCS3A01G327600 chr3B 94.068 118 6 1 544 660 567154798 567154915 7.890000e-41 178.0
12 TraesCS3A01G327600 chr3B 93.220 118 6 2 544 659 567179731 567179848 3.670000e-39 172.0
13 TraesCS3A01G327600 chr3B 95.000 80 4 0 1685 1764 787459110 787459031 2.900000e-25 126.0
14 TraesCS3A01G327600 chr3B 92.683 82 6 0 1683 1764 787567611 787567530 4.850000e-23 119.0
15 TraesCS3A01G327600 chr2B 90.265 945 60 8 659 1581 143613410 143612476 0.000000e+00 1206.0
16 TraesCS3A01G327600 chr2B 91.683 517 35 2 1732 2247 143489471 143488962 0.000000e+00 710.0
17 TraesCS3A01G327600 chr2B 89.925 268 26 1 659 926 143488962 143489228 7.350000e-91 344.0
18 TraesCS3A01G327600 chr2B 87.956 274 23 4 1975 2247 143613146 143613410 5.760000e-82 315.0
19 TraesCS3A01G327600 chr2B 95.238 84 4 0 1602 1685 143584226 143584143 1.730000e-27 134.0
20 TraesCS3A01G327600 chr2D 86.312 1052 73 22 659 1686 156600419 156599415 0.000000e+00 1079.0
21 TraesCS3A01G327600 chr2D 92.933 566 32 3 1683 2247 156599371 156598813 0.000000e+00 817.0
22 TraesCS3A01G327600 chr2D 88.360 567 46 8 1683 2247 559182075 559181527 0.000000e+00 664.0
23 TraesCS3A01G327600 chr2D 87.568 555 47 17 1153 1699 609548956 609548416 8.430000e-175 623.0
24 TraesCS3A01G327600 chr2D 87.854 494 42 5 659 1152 559182825 559182350 5.180000e-157 564.0
25 TraesCS3A01G327600 chr2D 90.672 268 24 1 659 926 156598813 156599079 3.390000e-94 355.0
26 TraesCS3A01G327600 chr2D 90.545 275 17 4 1975 2247 156600152 156600419 3.390000e-94 355.0
27 TraesCS3A01G327600 chr7B 88.901 892 68 7 661 1530 646029224 646030106 0.000000e+00 1070.0
28 TraesCS3A01G327600 chr7B 88.889 333 26 8 1918 2247 646031120 646031444 1.550000e-107 399.0
29 TraesCS3A01G327600 chr7B 93.478 184 8 4 1519 1699 646030361 646030543 1.260000e-68 270.0
30 TraesCS3A01G327600 chr4B 89.242 567 50 5 1683 2247 80021498 80022055 0.000000e+00 699.0
31 TraesCS3A01G327600 chr4B 88.889 495 44 5 659 1152 19998336 19998820 1.420000e-167 599.0
32 TraesCS3A01G327600 chr4B 88.235 442 44 3 1683 2123 19999111 19999545 3.160000e-144 521.0
33 TraesCS3A01G327600 chr4B 87.732 269 30 3 659 926 80022055 80021789 7.450000e-81 311.0
34 TraesCS3A01G327600 chr4B 90.476 105 6 4 1598 1699 80020961 80021064 4.810000e-28 135.0
35 TraesCS3A01G327600 chr7D 89.299 542 36 6 1166 1685 519398319 519397778 0.000000e+00 660.0
36 TraesCS3A01G327600 chr7D 90.141 71 7 0 1867 1937 94002232 94002162 2.940000e-15 93.5
37 TraesCS3A01G327600 chr4D 84.293 382 47 6 1867 2247 97714998 97714629 7.300000e-96 361.0
38 TraesCS3A01G327600 chr3D 89.078 293 12 7 263 552 433827175 433827450 2.040000e-91 346.0
39 TraesCS3A01G327600 chr3D 93.162 117 7 1 544 659 433827636 433827752 1.320000e-38 171.0
40 TraesCS3A01G327600 chr3D 96.250 80 3 0 1685 1764 589217718 589217797 6.230000e-27 132.0
41 TraesCS3A01G327600 chr3D 95.000 80 4 0 1685 1764 588834670 588834591 2.900000e-25 126.0
42 TraesCS3A01G327600 chr5A 92.667 150 11 0 73 222 356469084 356469233 1.670000e-52 217.0
43 TraesCS3A01G327600 chrUn 91.333 150 13 0 73 222 93262016 93262165 3.620000e-49 206.0
44 TraesCS3A01G327600 chrUn 91.333 150 13 0 73 222 252510699 252510550 3.620000e-49 206.0
45 TraesCS3A01G327600 chrUn 90.000 150 15 0 73 222 418863945 418863796 7.830000e-46 195.0
46 TraesCS3A01G327600 chr7A 90.260 154 15 0 73 226 16791823 16791976 4.680000e-48 202.0
47 TraesCS3A01G327600 chr2A 90.260 154 15 0 73 226 654866244 654866091 4.680000e-48 202.0
48 TraesCS3A01G327600 chr1A 89.610 154 16 0 73 226 520128501 520128654 2.180000e-46 196.0
49 TraesCS3A01G327600 chr1D 90.000 150 15 0 73 222 470206999 470206850 7.830000e-46 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G327600 chr3A 572566486 572569256 2770 False 5118.000000 5118 100.000000 1 2771 1 chr3A.!!$F1 2770
1 TraesCS3A01G327600 chr3B 763307463 763309097 1634 True 1007.000000 1251 90.044500 659 2247 2 chr3B.!!$R3 1588
2 TraesCS3A01G327600 chr3B 567154327 567155207 880 False 291.333333 350 90.371000 263 2561 3 chr3B.!!$F3 2298
3 TraesCS3A01G327600 chr3B 567176923 567179848 2925 False 226.500000 281 91.313500 263 659 2 chr3B.!!$F4 396
4 TraesCS3A01G327600 chr2B 143612476 143613410 934 True 1206.000000 1206 90.265000 659 1581 1 chr2B.!!$R3 922
5 TraesCS3A01G327600 chr2B 143488962 143489471 509 True 710.000000 710 91.683000 1732 2247 1 chr2B.!!$R1 515
6 TraesCS3A01G327600 chr2D 156598813 156600419 1606 True 948.000000 1079 89.622500 659 2247 2 chr2D.!!$R2 1588
7 TraesCS3A01G327600 chr2D 609548416 609548956 540 True 623.000000 623 87.568000 1153 1699 1 chr2D.!!$R1 546
8 TraesCS3A01G327600 chr2D 559181527 559182825 1298 True 614.000000 664 88.107000 659 2247 2 chr2D.!!$R3 1588
9 TraesCS3A01G327600 chr2D 156598813 156600419 1606 False 355.000000 355 90.608500 659 2247 2 chr2D.!!$F1 1588
10 TraesCS3A01G327600 chr7B 646029224 646031444 2220 False 579.666667 1070 90.422667 661 2247 3 chr7B.!!$F1 1586
11 TraesCS3A01G327600 chr4B 19998336 19999545 1209 False 560.000000 599 88.562000 659 2123 2 chr4B.!!$F1 1464
12 TraesCS3A01G327600 chr4B 80020961 80022055 1094 False 417.000000 699 89.859000 1598 2247 2 chr4B.!!$F2 649
13 TraesCS3A01G327600 chr7D 519397778 519398319 541 True 660.000000 660 89.299000 1166 1685 1 chr7D.!!$R2 519
14 TraesCS3A01G327600 chr3D 433827175 433827752 577 False 258.500000 346 91.120000 263 659 2 chr3D.!!$F2 396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.039180 TGGAGGCGGAGAAGACAGTA 59.961 55.0 0.00 0.00 0.0 2.74 F
146 147 0.110823 CAATTCCTTATACCGCGCGC 60.111 55.0 27.36 23.91 0.0 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 5331 0.461548 CTAAGCCTGGATGCTCACGA 59.538 55.000 0.0 0.0 41.8 4.35 R
2034 5828 1.007271 CGTGTGCGTCTTGACTCCT 60.007 57.895 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.208426 TTGGAGGCGGAGAAGACA 57.792 55.556 0.00 0.00 0.00 3.41
18 19 1.975327 TTGGAGGCGGAGAAGACAG 59.025 57.895 0.00 0.00 0.00 3.51
19 20 0.832135 TTGGAGGCGGAGAAGACAGT 60.832 55.000 0.00 0.00 0.00 3.55
20 21 0.039180 TGGAGGCGGAGAAGACAGTA 59.961 55.000 0.00 0.00 0.00 2.74
21 22 1.342076 TGGAGGCGGAGAAGACAGTAT 60.342 52.381 0.00 0.00 0.00 2.12
22 23 1.067821 GGAGGCGGAGAAGACAGTATG 59.932 57.143 0.00 0.00 46.00 2.39
23 24 0.461961 AGGCGGAGAAGACAGTATGC 59.538 55.000 0.00 0.00 42.53 3.14
24 25 0.872021 GGCGGAGAAGACAGTATGCG 60.872 60.000 0.00 0.00 42.53 4.73
25 26 0.179134 GCGGAGAAGACAGTATGCGT 60.179 55.000 0.00 0.00 42.53 5.24
26 27 1.828832 CGGAGAAGACAGTATGCGTC 58.171 55.000 0.00 0.00 42.53 5.19
27 28 1.534175 CGGAGAAGACAGTATGCGTCC 60.534 57.143 3.12 0.00 42.53 4.79
28 29 1.751924 GGAGAAGACAGTATGCGTCCT 59.248 52.381 3.12 0.00 42.53 3.85
29 30 2.166664 GGAGAAGACAGTATGCGTCCTT 59.833 50.000 3.12 0.00 42.53 3.36
30 31 3.182967 GAGAAGACAGTATGCGTCCTTG 58.817 50.000 3.12 0.00 42.53 3.61
31 32 2.093973 AGAAGACAGTATGCGTCCTTGG 60.094 50.000 3.12 0.00 42.53 3.61
32 33 0.537188 AGACAGTATGCGTCCTTGGG 59.463 55.000 3.12 0.00 42.53 4.12
33 34 0.462047 GACAGTATGCGTCCTTGGGG 60.462 60.000 0.00 0.00 42.53 4.96
34 35 1.198759 ACAGTATGCGTCCTTGGGGT 61.199 55.000 0.00 0.00 42.53 4.95
35 36 0.744414 CAGTATGCGTCCTTGGGGTG 60.744 60.000 0.00 0.00 0.00 4.61
36 37 2.112815 GTATGCGTCCTTGGGGTGC 61.113 63.158 0.00 0.00 36.27 5.01
37 38 3.673956 TATGCGTCCTTGGGGTGCG 62.674 63.158 0.00 0.00 37.69 5.34
41 42 4.717313 GTCCTTGGGGTGCGGGTC 62.717 72.222 0.00 0.00 0.00 4.46
78 79 3.423154 GTGCGTTGGAGGCGGAAG 61.423 66.667 0.00 0.00 0.00 3.46
95 96 3.809775 GCGGGCGCTGCAAATACA 61.810 61.111 18.05 0.00 35.55 2.29
96 97 2.100216 CGGGCGCTGCAAATACAC 59.900 61.111 7.64 0.00 0.00 2.90
97 98 2.489751 GGGCGCTGCAAATACACC 59.510 61.111 7.64 0.00 0.00 4.16
98 99 2.100216 GGCGCTGCAAATACACCG 59.900 61.111 7.64 0.00 0.00 4.94
99 100 2.576847 GCGCTGCAAATACACCGC 60.577 61.111 0.00 0.00 37.46 5.68
100 101 2.276617 CGCTGCAAATACACCGCG 60.277 61.111 0.00 0.00 34.50 6.46
101 102 2.576847 GCTGCAAATACACCGCGC 60.577 61.111 0.00 0.00 0.00 6.86
102 103 2.276617 CTGCAAATACACCGCGCG 60.277 61.111 25.67 25.67 0.00 6.86
103 104 2.735677 CTGCAAATACACCGCGCGA 61.736 57.895 34.63 12.32 0.00 5.87
104 105 2.021380 GCAAATACACCGCGCGAG 59.979 61.111 34.63 25.26 0.00 5.03
105 106 2.449525 GCAAATACACCGCGCGAGA 61.450 57.895 34.63 13.60 0.00 4.04
106 107 1.762222 GCAAATACACCGCGCGAGAT 61.762 55.000 34.63 18.05 0.00 2.75
107 108 1.483316 CAAATACACCGCGCGAGATA 58.517 50.000 34.63 19.73 0.00 1.98
108 109 1.452025 CAAATACACCGCGCGAGATAG 59.548 52.381 34.63 17.10 0.00 2.08
109 110 0.663568 AATACACCGCGCGAGATAGC 60.664 55.000 34.63 0.00 0.00 2.97
118 119 2.439964 GCGAGATAGCGATTCCTGC 58.560 57.895 0.00 0.00 0.00 4.85
119 120 1.011451 GCGAGATAGCGATTCCTGCC 61.011 60.000 0.00 0.00 0.00 4.85
120 121 0.730834 CGAGATAGCGATTCCTGCCG 60.731 60.000 0.00 0.00 0.00 5.69
132 133 4.520846 CTGCCGCGCGTCCAATTC 62.521 66.667 29.95 8.66 0.00 2.17
135 136 3.124921 CCGCGCGTCCAATTCCTT 61.125 61.111 29.95 0.00 0.00 3.36
136 137 1.812093 CCGCGCGTCCAATTCCTTA 60.812 57.895 29.95 0.00 0.00 2.69
137 138 1.157870 CCGCGCGTCCAATTCCTTAT 61.158 55.000 29.95 0.00 0.00 1.73
138 139 1.493772 CGCGCGTCCAATTCCTTATA 58.506 50.000 24.19 0.00 0.00 0.98
139 140 1.191647 CGCGCGTCCAATTCCTTATAC 59.808 52.381 24.19 0.00 0.00 1.47
140 141 1.529865 GCGCGTCCAATTCCTTATACC 59.470 52.381 8.43 0.00 0.00 2.73
141 142 1.790623 CGCGTCCAATTCCTTATACCG 59.209 52.381 0.00 0.00 0.00 4.02
142 143 1.529865 GCGTCCAATTCCTTATACCGC 59.470 52.381 0.00 0.00 0.00 5.68
143 144 1.790623 CGTCCAATTCCTTATACCGCG 59.209 52.381 0.00 0.00 0.00 6.46
144 145 1.529865 GTCCAATTCCTTATACCGCGC 59.470 52.381 0.00 0.00 0.00 6.86
145 146 0.511221 CCAATTCCTTATACCGCGCG 59.489 55.000 25.67 25.67 0.00 6.86
146 147 0.110823 CAATTCCTTATACCGCGCGC 60.111 55.000 27.36 23.91 0.00 6.86
147 148 1.554042 AATTCCTTATACCGCGCGCG 61.554 55.000 43.73 43.73 39.44 6.86
164 165 4.568876 GCGGTTATTGCGCGTCCG 62.569 66.667 18.73 18.73 43.37 4.79
203 204 2.277247 CGCGTGCGCTAAATTGGG 60.277 61.111 9.73 0.00 39.32 4.12
204 205 2.874751 GCGTGCGCTAAATTGGGT 59.125 55.556 9.73 0.00 38.26 4.51
205 206 1.697772 CGCGTGCGCTAAATTGGGTA 61.698 55.000 9.73 0.00 39.32 3.69
206 207 0.661020 GCGTGCGCTAAATTGGGTAT 59.339 50.000 9.73 0.00 38.26 2.73
207 208 1.868498 GCGTGCGCTAAATTGGGTATA 59.132 47.619 9.73 0.00 38.26 1.47
208 209 2.482721 GCGTGCGCTAAATTGGGTATAT 59.517 45.455 9.73 0.00 38.26 0.86
209 210 3.058501 GCGTGCGCTAAATTGGGTATATT 60.059 43.478 9.73 0.00 38.26 1.28
210 211 4.555906 GCGTGCGCTAAATTGGGTATATTT 60.556 41.667 9.73 0.00 38.26 1.40
211 212 4.909305 CGTGCGCTAAATTGGGTATATTTG 59.091 41.667 9.73 0.00 0.00 2.32
212 213 4.679654 GTGCGCTAAATTGGGTATATTTGC 59.320 41.667 9.73 0.00 0.00 3.68
213 214 3.911964 GCGCTAAATTGGGTATATTTGCG 59.088 43.478 0.00 8.39 40.79 4.85
214 215 4.472286 CGCTAAATTGGGTATATTTGCGG 58.528 43.478 0.00 0.00 37.99 5.69
215 216 4.234574 GCTAAATTGGGTATATTTGCGGC 58.765 43.478 0.00 0.00 0.00 6.53
216 217 3.363341 AAATTGGGTATATTTGCGGCG 57.637 42.857 0.51 0.51 0.00 6.46
217 218 0.596082 ATTGGGTATATTTGCGGCGC 59.404 50.000 27.44 27.44 0.00 6.53
218 219 1.777030 TTGGGTATATTTGCGGCGCG 61.777 55.000 28.09 0.00 0.00 6.86
219 220 2.554272 GGTATATTTGCGGCGCGG 59.446 61.111 28.09 11.08 0.00 6.46
220 221 2.127383 GTATATTTGCGGCGCGGC 60.127 61.111 30.55 30.55 0.00 6.53
221 222 3.707700 TATATTTGCGGCGCGGCG 61.708 61.111 45.02 45.02 35.06 6.46
241 242 4.666397 TGGCGCGGCGTCTGTTTA 62.666 61.111 28.02 3.91 30.55 2.01
242 243 3.849953 GGCGCGGCGTCTGTTTAG 61.850 66.667 24.46 0.00 0.00 1.85
243 244 4.500568 GCGCGGCGTCTGTTTAGC 62.501 66.667 24.46 0.00 0.00 3.09
244 245 4.191485 CGCGGCGTCTGTTTAGCG 62.191 66.667 15.36 0.00 41.56 4.26
245 246 4.500568 GCGGCGTCTGTTTAGCGC 62.501 66.667 9.37 0.00 43.66 5.92
246 247 4.191485 CGGCGTCTGTTTAGCGCG 62.191 66.667 0.00 0.00 44.58 6.86
247 248 4.500568 GGCGTCTGTTTAGCGCGC 62.501 66.667 26.66 26.66 44.58 6.86
248 249 4.500568 GCGTCTGTTTAGCGCGCC 62.501 66.667 30.33 13.41 39.95 6.53
249 250 2.809601 CGTCTGTTTAGCGCGCCT 60.810 61.111 30.33 17.79 0.00 5.52
250 251 2.778679 GTCTGTTTAGCGCGCCTG 59.221 61.111 30.33 16.21 0.00 4.85
251 252 2.027625 GTCTGTTTAGCGCGCCTGT 61.028 57.895 30.33 12.78 0.00 4.00
252 253 1.301401 TCTGTTTAGCGCGCCTGTT 60.301 52.632 30.33 12.34 0.00 3.16
253 254 1.154413 CTGTTTAGCGCGCCTGTTG 60.154 57.895 30.33 10.42 0.00 3.33
254 255 2.175811 GTTTAGCGCGCCTGTTGG 59.824 61.111 30.33 0.00 0.00 3.77
255 256 2.031314 TTTAGCGCGCCTGTTGGA 59.969 55.556 30.33 3.95 34.57 3.53
256 257 2.032634 TTTAGCGCGCCTGTTGGAG 61.033 57.895 30.33 0.00 36.16 3.86
257 258 3.950794 TTAGCGCGCCTGTTGGAGG 62.951 63.158 30.33 0.00 46.13 4.30
303 304 3.146396 GCGCAATGCAAAACCGAC 58.854 55.556 5.91 0.00 45.45 4.79
334 335 1.880646 GCCTCTTGTGAACCGCCTTTA 60.881 52.381 0.00 0.00 0.00 1.85
335 336 2.500229 CCTCTTGTGAACCGCCTTTAA 58.500 47.619 0.00 0.00 0.00 1.52
336 337 3.081804 CCTCTTGTGAACCGCCTTTAAT 58.918 45.455 0.00 0.00 0.00 1.40
338 339 4.022329 CCTCTTGTGAACCGCCTTTAATTT 60.022 41.667 0.00 0.00 0.00 1.82
339 340 4.865776 TCTTGTGAACCGCCTTTAATTTG 58.134 39.130 0.00 0.00 0.00 2.32
340 341 3.651803 TGTGAACCGCCTTTAATTTGG 57.348 42.857 0.00 0.00 0.00 3.28
341 342 2.297597 TGTGAACCGCCTTTAATTTGGG 59.702 45.455 0.00 0.00 0.00 4.12
342 343 2.297880 GTGAACCGCCTTTAATTTGGGT 59.702 45.455 0.00 0.00 0.00 4.51
343 344 3.506844 GTGAACCGCCTTTAATTTGGGTA 59.493 43.478 0.00 0.00 0.00 3.69
344 345 4.158949 GTGAACCGCCTTTAATTTGGGTAT 59.841 41.667 0.00 0.00 0.00 2.73
345 346 4.399934 TGAACCGCCTTTAATTTGGGTATC 59.600 41.667 0.00 0.00 0.00 2.24
346 347 2.946990 ACCGCCTTTAATTTGGGTATCG 59.053 45.455 0.00 0.00 0.00 2.92
368 369 3.146618 TCTTGTCCGAGTTCTAATCGC 57.853 47.619 0.00 0.00 38.84 4.58
427 431 3.998672 GGCGACCAACCGGAGTCA 61.999 66.667 9.46 0.00 35.59 3.41
466 470 8.420374 TTTCGGATTCACTAATTCACATCTAC 57.580 34.615 0.00 0.00 0.00 2.59
467 471 7.348080 TCGGATTCACTAATTCACATCTACT 57.652 36.000 0.00 0.00 0.00 2.57
468 472 7.426410 TCGGATTCACTAATTCACATCTACTC 58.574 38.462 0.00 0.00 0.00 2.59
469 473 6.642950 CGGATTCACTAATTCACATCTACTCC 59.357 42.308 0.00 0.00 0.00 3.85
470 474 7.470702 CGGATTCACTAATTCACATCTACTCCT 60.471 40.741 0.00 0.00 0.00 3.69
471 475 8.861086 GGATTCACTAATTCACATCTACTCCTA 58.139 37.037 0.00 0.00 0.00 2.94
491 495 9.372369 ACTCCTAGATGAGAATTAAGTTTTTCG 57.628 33.333 3.32 0.00 36.22 3.46
582 3184 4.013050 GGCCTATCTGCTCACTTTCTTTT 58.987 43.478 0.00 0.00 0.00 2.27
650 3253 7.924947 CGTAGCTTAGCCCTTTTTACTAGTAAT 59.075 37.037 15.92 2.36 0.00 1.89
694 3297 3.090210 ACCATCACATTTGAGGCATCA 57.910 42.857 0.00 0.00 34.35 3.07
787 3390 2.159393 GCACTTATCGCTTGATTTGCCA 60.159 45.455 0.00 0.00 33.40 4.92
921 3525 6.502136 TCTCACACACATTACAACAAACAA 57.498 33.333 0.00 0.00 0.00 2.83
961 3566 4.179579 GGCGCCGCTTCACCAATC 62.180 66.667 12.58 0.00 0.00 2.67
962 3567 3.430862 GCGCCGCTTCACCAATCA 61.431 61.111 0.00 0.00 0.00 2.57
963 3568 2.480555 CGCCGCTTCACCAATCAC 59.519 61.111 0.00 0.00 0.00 3.06
964 3569 2.877691 GCCGCTTCACCAATCACC 59.122 61.111 0.00 0.00 0.00 4.02
965 3570 1.971167 GCCGCTTCACCAATCACCA 60.971 57.895 0.00 0.00 0.00 4.17
1047 3652 4.379243 CAGCCGCTCCCTCAACGT 62.379 66.667 0.00 0.00 0.00 3.99
1210 3818 5.028549 TCCCTCACATTCTATTTCAGCTC 57.971 43.478 0.00 0.00 0.00 4.09
1404 4085 4.052229 CGGAGGTCAAGTCGCCGT 62.052 66.667 0.00 0.00 41.48 5.68
1648 4760 1.207488 CCATGAGTTGAGGGGTCCCA 61.207 60.000 10.98 0.00 38.92 4.37
1655 4767 0.774096 TTGAGGGGTCCCATCACCAA 60.774 55.000 24.91 8.09 38.32 3.67
1765 5331 3.525844 TACGCGCACAAGTCGTCGT 62.526 57.895 5.73 0.00 40.50 4.34
1782 5348 1.078848 GTCGTGAGCATCCAGGCTT 60.079 57.895 0.00 0.00 45.99 4.35
1928 5626 1.610673 GACAGCTCCACTCTCCCCA 60.611 63.158 0.00 0.00 0.00 4.96
1954 5747 4.057428 GACGGCGTCAGGCTCTGT 62.057 66.667 33.07 0.00 42.94 3.41
1980 5773 3.007516 GTGCACGCACACAACGTA 58.992 55.556 17.03 0.00 45.53 3.57
2033 5827 5.011635 AGAGGAGAAAGAAGAAGACTTGGTC 59.988 44.000 0.00 0.00 36.39 4.02
2034 5828 4.656112 AGGAGAAAGAAGAAGACTTGGTCA 59.344 41.667 0.00 0.00 36.39 4.02
2035 5829 4.994217 GGAGAAAGAAGAAGACTTGGTCAG 59.006 45.833 0.00 0.00 36.39 3.51
2036 5830 4.967036 AGAAAGAAGAAGACTTGGTCAGG 58.033 43.478 0.00 0.00 36.39 3.86
2037 5831 4.656112 AGAAAGAAGAAGACTTGGTCAGGA 59.344 41.667 0.00 0.00 36.39 3.86
2038 5832 4.615588 AAGAAGAAGACTTGGTCAGGAG 57.384 45.455 0.00 0.00 36.39 3.69
2039 5833 3.582164 AGAAGAAGACTTGGTCAGGAGT 58.418 45.455 0.00 0.00 36.39 3.85
2080 5876 2.949177 TTTTGCCAAGTCAGCTCCTA 57.051 45.000 0.00 0.00 0.00 2.94
2242 6041 8.030744 TCAAATGTGATGGTTTTATGCAATTG 57.969 30.769 0.00 0.00 0.00 2.32
2247 6046 6.015603 TGTGATGGTTTTATGCAATTGACTCA 60.016 34.615 10.34 0.00 0.00 3.41
2248 6047 6.867816 GTGATGGTTTTATGCAATTGACTCAA 59.132 34.615 10.34 0.00 0.00 3.02
2249 6048 6.867816 TGATGGTTTTATGCAATTGACTCAAC 59.132 34.615 10.34 4.71 0.00 3.18
2250 6049 6.403866 TGGTTTTATGCAATTGACTCAACT 57.596 33.333 10.34 0.00 0.00 3.16
2251 6050 6.815089 TGGTTTTATGCAATTGACTCAACTT 58.185 32.000 10.34 0.00 0.00 2.66
2252 6051 7.271511 TGGTTTTATGCAATTGACTCAACTTT 58.728 30.769 10.34 0.00 0.00 2.66
2253 6052 7.768120 TGGTTTTATGCAATTGACTCAACTTTT 59.232 29.630 10.34 0.00 0.00 2.27
2254 6053 8.611757 GGTTTTATGCAATTGACTCAACTTTTT 58.388 29.630 10.34 0.00 0.00 1.94
2304 6103 4.497473 TTTTGGACAATTTAGAGTGCCG 57.503 40.909 0.00 0.00 0.00 5.69
2312 6111 3.678056 ATTTAGAGTGCCGTGTTCTGA 57.322 42.857 0.00 0.00 0.00 3.27
2359 6158 6.275381 TCATCATCCCATATTGAACCCTGTAT 59.725 38.462 0.00 0.00 0.00 2.29
2360 6159 5.879763 TCATCCCATATTGAACCCTGTATG 58.120 41.667 0.00 0.00 0.00 2.39
2361 6160 5.372363 TCATCCCATATTGAACCCTGTATGT 59.628 40.000 0.00 0.00 0.00 2.29
2362 6161 6.560687 TCATCCCATATTGAACCCTGTATGTA 59.439 38.462 0.00 0.00 0.00 2.29
2379 6178 9.814899 CCTGTATGTATGAATAGGATCAGATTC 57.185 37.037 10.46 10.46 31.76 2.52
2446 6246 4.119862 TCTATAAAATCGTGTGAGCTGCC 58.880 43.478 0.00 0.00 0.00 4.85
2498 6298 5.654603 TGGTGTCGTCATCAACTATTAGT 57.345 39.130 0.00 0.00 31.11 2.24
2525 6325 8.508875 TCCATCGTGGACTTTTCTAAAAATAAC 58.491 33.333 3.02 0.00 42.67 1.89
2543 6343 8.891671 AAAATAACACTTGCAATTTCTCACAT 57.108 26.923 0.00 0.00 0.00 3.21
2552 6352 6.344572 TGCAATTTCTCACATATGTACGTC 57.655 37.500 8.32 0.00 0.00 4.34
2561 6361 8.496707 TCTCACATATGTACGTCTACACTAAA 57.503 34.615 8.32 0.00 35.63 1.85
2562 6362 8.949177 TCTCACATATGTACGTCTACACTAAAA 58.051 33.333 8.32 0.00 35.63 1.52
2563 6363 9.563898 CTCACATATGTACGTCTACACTAAAAA 57.436 33.333 8.32 0.00 35.63 1.94
2564 6364 9.563898 TCACATATGTACGTCTACACTAAAAAG 57.436 33.333 8.32 0.00 35.63 2.27
2565 6365 9.350357 CACATATGTACGTCTACACTAAAAAGT 57.650 33.333 8.32 0.00 35.63 2.66
2570 6370 8.560576 TGTACGTCTACACTAAAAAGTACAAC 57.439 34.615 0.00 0.00 39.77 3.32
2571 6371 8.187480 TGTACGTCTACACTAAAAAGTACAACA 58.813 33.333 0.00 0.00 39.77 3.33
2572 6372 9.185192 GTACGTCTACACTAAAAAGTACAACAT 57.815 33.333 0.00 0.00 34.91 2.71
2573 6373 8.068893 ACGTCTACACTAAAAAGTACAACATG 57.931 34.615 0.00 0.00 0.00 3.21
2574 6374 7.170320 ACGTCTACACTAAAAAGTACAACATGG 59.830 37.037 0.00 0.00 0.00 3.66
2575 6375 7.170320 CGTCTACACTAAAAAGTACAACATGGT 59.830 37.037 0.00 0.00 0.00 3.55
2576 6376 8.833493 GTCTACACTAAAAAGTACAACATGGTT 58.167 33.333 0.00 0.00 0.00 3.67
2577 6377 8.832521 TCTACACTAAAAAGTACAACATGGTTG 58.167 33.333 7.51 7.51 0.00 3.77
2578 6378 6.270064 ACACTAAAAAGTACAACATGGTTGC 58.730 36.000 8.89 0.00 0.00 4.17
2579 6379 6.096282 ACACTAAAAAGTACAACATGGTTGCT 59.904 34.615 8.89 0.00 0.00 3.91
2580 6380 7.283580 ACACTAAAAAGTACAACATGGTTGCTA 59.716 33.333 8.89 0.00 0.00 3.49
2581 6381 8.296713 CACTAAAAAGTACAACATGGTTGCTAT 58.703 33.333 8.89 0.00 0.00 2.97
2582 6382 8.296713 ACTAAAAAGTACAACATGGTTGCTATG 58.703 33.333 8.89 0.00 0.00 2.23
2583 6383 6.648879 AAAAGTACAACATGGTTGCTATGT 57.351 33.333 8.89 0.00 40.30 2.29
2584 6384 5.880054 AAGTACAACATGGTTGCTATGTC 57.120 39.130 8.89 0.00 37.77 3.06
2585 6385 5.165961 AGTACAACATGGTTGCTATGTCT 57.834 39.130 8.89 0.00 37.77 3.41
2586 6386 4.937620 AGTACAACATGGTTGCTATGTCTG 59.062 41.667 8.89 3.52 37.77 3.51
2587 6387 2.489329 ACAACATGGTTGCTATGTCTGC 59.511 45.455 8.89 0.00 37.77 4.26
2588 6388 1.372582 ACATGGTTGCTATGTCTGCG 58.627 50.000 0.00 0.00 33.72 5.18
2589 6389 1.339055 ACATGGTTGCTATGTCTGCGT 60.339 47.619 0.00 0.00 33.72 5.24
2590 6390 1.739466 CATGGTTGCTATGTCTGCGTT 59.261 47.619 0.00 0.00 0.00 4.84
2591 6391 1.438651 TGGTTGCTATGTCTGCGTTC 58.561 50.000 0.00 0.00 0.00 3.95
2592 6392 0.727398 GGTTGCTATGTCTGCGTTCC 59.273 55.000 0.00 0.00 0.00 3.62
2593 6393 1.438651 GTTGCTATGTCTGCGTTCCA 58.561 50.000 0.00 0.00 0.00 3.53
2594 6394 2.009774 GTTGCTATGTCTGCGTTCCAT 58.990 47.619 0.00 0.00 0.00 3.41
2595 6395 3.194861 GTTGCTATGTCTGCGTTCCATA 58.805 45.455 0.00 0.00 0.00 2.74
2596 6396 3.097877 TGCTATGTCTGCGTTCCATAG 57.902 47.619 0.00 0.00 40.52 2.23
2597 6397 2.224042 TGCTATGTCTGCGTTCCATAGG 60.224 50.000 11.87 0.00 38.84 2.57
2598 6398 2.408050 CTATGTCTGCGTTCCATAGGC 58.592 52.381 0.00 0.00 36.16 3.93
2599 6399 0.179045 ATGTCTGCGTTCCATAGGCC 60.179 55.000 0.00 0.00 36.82 5.19
2600 6400 1.883084 GTCTGCGTTCCATAGGCCG 60.883 63.158 0.00 0.00 36.82 6.13
2601 6401 2.055633 TCTGCGTTCCATAGGCCGA 61.056 57.895 0.00 0.00 36.82 5.54
2602 6402 1.069765 CTGCGTTCCATAGGCCGAT 59.930 57.895 0.00 0.00 36.82 4.18
2603 6403 0.532862 CTGCGTTCCATAGGCCGATT 60.533 55.000 0.00 0.00 36.82 3.34
2604 6404 0.753867 TGCGTTCCATAGGCCGATTA 59.246 50.000 0.00 0.00 36.82 1.75
2605 6405 1.346395 TGCGTTCCATAGGCCGATTAT 59.654 47.619 0.00 0.00 36.82 1.28
2606 6406 2.224426 TGCGTTCCATAGGCCGATTATT 60.224 45.455 0.00 0.00 36.82 1.40
2607 6407 3.007074 TGCGTTCCATAGGCCGATTATTA 59.993 43.478 0.00 0.00 36.82 0.98
2608 6408 3.370061 GCGTTCCATAGGCCGATTATTAC 59.630 47.826 0.00 0.00 0.00 1.89
2609 6409 3.930848 CGTTCCATAGGCCGATTATTACC 59.069 47.826 0.00 0.00 0.00 2.85
2610 6410 4.322499 CGTTCCATAGGCCGATTATTACCT 60.322 45.833 0.00 0.00 36.27 3.08
2611 6411 5.176592 GTTCCATAGGCCGATTATTACCTC 58.823 45.833 0.00 0.00 33.60 3.85
2612 6412 4.422057 TCCATAGGCCGATTATTACCTCA 58.578 43.478 0.00 0.00 33.60 3.86
2613 6413 4.466370 TCCATAGGCCGATTATTACCTCAG 59.534 45.833 0.00 0.00 33.60 3.35
2614 6414 2.841442 AGGCCGATTATTACCTCAGC 57.159 50.000 0.00 0.00 0.00 4.26
2615 6415 2.330216 AGGCCGATTATTACCTCAGCT 58.670 47.619 0.00 0.00 0.00 4.24
2616 6416 2.037772 AGGCCGATTATTACCTCAGCTG 59.962 50.000 7.63 7.63 0.00 4.24
2617 6417 1.801178 GCCGATTATTACCTCAGCTGC 59.199 52.381 9.47 0.00 0.00 5.25
2618 6418 2.806745 GCCGATTATTACCTCAGCTGCA 60.807 50.000 9.47 0.00 0.00 4.41
2619 6419 2.802816 CCGATTATTACCTCAGCTGCAC 59.197 50.000 9.47 0.00 0.00 4.57
2620 6420 3.493350 CCGATTATTACCTCAGCTGCACT 60.493 47.826 9.47 0.00 0.00 4.40
2621 6421 4.122776 CGATTATTACCTCAGCTGCACTT 58.877 43.478 9.47 0.00 0.00 3.16
2622 6422 4.572389 CGATTATTACCTCAGCTGCACTTT 59.428 41.667 9.47 0.00 0.00 2.66
2623 6423 5.065218 CGATTATTACCTCAGCTGCACTTTT 59.935 40.000 9.47 0.00 0.00 2.27
2624 6424 6.403636 CGATTATTACCTCAGCTGCACTTTTT 60.404 38.462 9.47 0.00 0.00 1.94
2645 6445 5.854010 TTTTAAATGGGTGTAGTTGCACA 57.146 34.783 2.88 0.00 40.89 4.57
2646 6446 6.412362 TTTTAAATGGGTGTAGTTGCACAT 57.588 33.333 2.88 0.00 40.89 3.21
2647 6447 6.412362 TTTAAATGGGTGTAGTTGCACATT 57.588 33.333 2.88 0.00 40.89 2.71
2648 6448 4.953940 AAATGGGTGTAGTTGCACATTT 57.046 36.364 2.88 0.00 40.89 2.32
2649 6449 4.953940 AATGGGTGTAGTTGCACATTTT 57.046 36.364 2.88 0.00 40.89 1.82
2650 6450 6.412362 AAATGGGTGTAGTTGCACATTTTA 57.588 33.333 2.88 0.00 40.89 1.52
2651 6451 6.412362 AATGGGTGTAGTTGCACATTTTAA 57.588 33.333 2.88 0.00 40.89 1.52
2652 6452 5.854010 TGGGTGTAGTTGCACATTTTAAA 57.146 34.783 2.88 0.00 40.89 1.52
2653 6453 6.222038 TGGGTGTAGTTGCACATTTTAAAA 57.778 33.333 2.51 2.51 40.89 1.52
2654 6454 6.640518 TGGGTGTAGTTGCACATTTTAAAAA 58.359 32.000 4.44 0.00 40.89 1.94
2674 6474 2.755836 AAAACGCAACTAGCACAGTG 57.244 45.000 0.00 0.00 46.13 3.66
2675 6475 1.663695 AAACGCAACTAGCACAGTGT 58.336 45.000 1.61 0.00 46.13 3.55
2676 6476 2.519377 AACGCAACTAGCACAGTGTA 57.481 45.000 1.61 0.00 46.13 2.90
2677 6477 2.743636 ACGCAACTAGCACAGTGTAT 57.256 45.000 1.61 0.00 46.13 2.29
2678 6478 2.337583 ACGCAACTAGCACAGTGTATG 58.662 47.619 1.61 0.00 46.13 2.39
2679 6479 1.061131 CGCAACTAGCACAGTGTATGC 59.939 52.381 1.61 0.00 46.13 3.14
2680 6480 2.076100 GCAACTAGCACAGTGTATGCA 58.924 47.619 8.29 0.00 45.92 3.96
2681 6481 2.679837 GCAACTAGCACAGTGTATGCAT 59.320 45.455 3.79 3.79 45.92 3.96
2682 6482 3.127548 GCAACTAGCACAGTGTATGCATT 59.872 43.478 3.54 0.00 45.92 3.56
2683 6483 4.379813 GCAACTAGCACAGTGTATGCATTT 60.380 41.667 3.54 0.00 45.92 2.32
2684 6484 5.702865 CAACTAGCACAGTGTATGCATTTT 58.297 37.500 3.54 0.00 45.92 1.82
2685 6485 6.622679 GCAACTAGCACAGTGTATGCATTTTA 60.623 38.462 3.54 0.00 45.92 1.52
2686 6486 7.475015 CAACTAGCACAGTGTATGCATTTTAT 58.525 34.615 3.54 0.00 45.92 1.40
2687 6487 8.611757 CAACTAGCACAGTGTATGCATTTTATA 58.388 33.333 3.54 0.00 45.92 0.98
2688 6488 8.908786 ACTAGCACAGTGTATGCATTTTATAT 57.091 30.769 3.54 0.00 45.92 0.86
2689 6489 9.342308 ACTAGCACAGTGTATGCATTTTATATT 57.658 29.630 3.54 0.00 45.92 1.28
2692 6492 9.304731 AGCACAGTGTATGCATTTTATATTTTG 57.695 29.630 3.54 0.00 45.92 2.44
2693 6493 9.299963 GCACAGTGTATGCATTTTATATTTTGA 57.700 29.630 3.54 0.00 42.88 2.69
2711 6511 9.736414 ATATTTTGATTATATCTCAGCTGCACT 57.264 29.630 9.47 0.00 0.00 4.40
2712 6512 7.870509 TTTTGATTATATCTCAGCTGCACTT 57.129 32.000 9.47 0.00 0.00 3.16
2713 6513 8.962884 TTTTGATTATATCTCAGCTGCACTTA 57.037 30.769 9.47 0.00 0.00 2.24
2714 6514 9.565090 TTTTGATTATATCTCAGCTGCACTTAT 57.435 29.630 9.47 6.23 0.00 1.73
2715 6515 9.565090 TTTGATTATATCTCAGCTGCACTTATT 57.435 29.630 9.47 0.00 0.00 1.40
2716 6516 9.565090 TTGATTATATCTCAGCTGCACTTATTT 57.435 29.630 9.47 0.00 0.00 1.40
2717 6517 9.565090 TGATTATATCTCAGCTGCACTTATTTT 57.435 29.630 9.47 0.00 0.00 1.82
2719 6519 8.962884 TTATATCTCAGCTGCACTTATTTTCA 57.037 30.769 9.47 0.00 0.00 2.69
2720 6520 5.814764 ATCTCAGCTGCACTTATTTTCAG 57.185 39.130 9.47 0.00 0.00 3.02
2721 6521 4.898320 TCTCAGCTGCACTTATTTTCAGA 58.102 39.130 9.47 0.00 0.00 3.27
2722 6522 5.308014 TCTCAGCTGCACTTATTTTCAGAA 58.692 37.500 9.47 0.00 0.00 3.02
2723 6523 5.764686 TCTCAGCTGCACTTATTTTCAGAAA 59.235 36.000 9.47 0.00 0.00 2.52
2724 6524 6.432162 TCTCAGCTGCACTTATTTTCAGAAAT 59.568 34.615 9.47 0.00 38.88 2.17
2725 6525 6.384224 TCAGCTGCACTTATTTTCAGAAATG 58.616 36.000 9.47 0.00 36.22 2.32
2726 6526 6.016024 TCAGCTGCACTTATTTTCAGAAATGT 60.016 34.615 9.47 0.00 36.22 2.71
2727 6527 6.089016 CAGCTGCACTTATTTTCAGAAATGTG 59.911 38.462 0.00 5.66 36.22 3.21
2728 6528 5.164022 GCTGCACTTATTTTCAGAAATGTGC 60.164 40.000 22.91 22.91 45.71 4.57
2730 6530 6.768029 GCACTTATTTTCAGAAATGTGCAA 57.232 33.333 23.81 3.20 45.30 4.08
2731 6531 6.584056 GCACTTATTTTCAGAAATGTGCAAC 58.416 36.000 23.81 8.02 45.30 4.17
2732 6532 6.421801 GCACTTATTTTCAGAAATGTGCAACT 59.578 34.615 23.81 0.00 45.30 3.16
2733 6533 7.568134 GCACTTATTTTCAGAAATGTGCAACTG 60.568 37.037 23.81 0.00 45.30 3.16
2734 6534 7.436080 CACTTATTTTCAGAAATGTGCAACTGT 59.564 33.333 0.00 0.00 36.22 3.55
2735 6535 7.649306 ACTTATTTTCAGAAATGTGCAACTGTC 59.351 33.333 0.00 0.00 36.22 3.51
2736 6536 4.979943 TTTCAGAAATGTGCAACTGTCA 57.020 36.364 0.00 0.00 38.04 3.58
2737 6537 5.518848 TTTCAGAAATGTGCAACTGTCAT 57.481 34.783 0.00 0.00 38.04 3.06
2738 6538 5.518848 TTCAGAAATGTGCAACTGTCATT 57.481 34.783 0.00 0.00 38.04 2.57
2739 6539 5.518848 TCAGAAATGTGCAACTGTCATTT 57.481 34.783 10.91 10.91 42.12 2.32
2740 6540 5.283294 TCAGAAATGTGCAACTGTCATTTG 58.717 37.500 14.76 5.10 40.38 2.32
2767 6567 9.708222 CAACTATGCTTCTATGTGTGTATTTTC 57.292 33.333 0.00 0.00 0.00 2.29
2768 6568 9.672673 AACTATGCTTCTATGTGTGTATTTTCT 57.327 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.832135 ACTGTCTTCTCCGCCTCCAA 60.832 55.000 0.00 0.00 0.00 3.53
1 2 0.039180 TACTGTCTTCTCCGCCTCCA 59.961 55.000 0.00 0.00 0.00 3.86
2 3 1.067821 CATACTGTCTTCTCCGCCTCC 59.932 57.143 0.00 0.00 0.00 4.30
3 4 1.537135 GCATACTGTCTTCTCCGCCTC 60.537 57.143 0.00 0.00 0.00 4.70
4 5 0.461961 GCATACTGTCTTCTCCGCCT 59.538 55.000 0.00 0.00 0.00 5.52
5 6 0.872021 CGCATACTGTCTTCTCCGCC 60.872 60.000 0.00 0.00 0.00 6.13
6 7 0.179134 ACGCATACTGTCTTCTCCGC 60.179 55.000 0.00 0.00 0.00 5.54
7 8 1.534175 GGACGCATACTGTCTTCTCCG 60.534 57.143 0.00 0.00 36.58 4.63
8 9 1.751924 AGGACGCATACTGTCTTCTCC 59.248 52.381 0.00 0.00 36.58 3.71
9 10 3.182967 CAAGGACGCATACTGTCTTCTC 58.817 50.000 0.00 0.00 36.58 2.87
10 11 2.093973 CCAAGGACGCATACTGTCTTCT 60.094 50.000 0.00 0.00 36.58 2.85
11 12 2.271800 CCAAGGACGCATACTGTCTTC 58.728 52.381 0.00 0.00 36.58 2.87
12 13 1.066143 CCCAAGGACGCATACTGTCTT 60.066 52.381 0.00 0.00 36.58 3.01
13 14 0.537188 CCCAAGGACGCATACTGTCT 59.463 55.000 0.00 0.00 36.58 3.41
14 15 0.462047 CCCCAAGGACGCATACTGTC 60.462 60.000 0.00 0.00 33.47 3.51
15 16 1.198759 ACCCCAAGGACGCATACTGT 61.199 55.000 0.00 0.00 36.73 3.55
16 17 0.744414 CACCCCAAGGACGCATACTG 60.744 60.000 0.00 0.00 36.73 2.74
17 18 1.602237 CACCCCAAGGACGCATACT 59.398 57.895 0.00 0.00 36.73 2.12
18 19 2.112815 GCACCCCAAGGACGCATAC 61.113 63.158 0.00 0.00 35.82 2.39
19 20 2.270850 GCACCCCAAGGACGCATA 59.729 61.111 0.00 0.00 35.82 3.14
24 25 4.717313 GACCCGCACCCCAAGGAC 62.717 72.222 0.00 0.00 36.73 3.85
61 62 3.423154 CTTCCGCCTCCAACGCAC 61.423 66.667 0.00 0.00 0.00 5.34
78 79 3.809775 TGTATTTGCAGCGCCCGC 61.810 61.111 12.24 12.24 42.33 6.13
79 80 2.100216 GTGTATTTGCAGCGCCCG 59.900 61.111 2.29 0.00 0.00 6.13
80 81 2.489751 GGTGTATTTGCAGCGCCC 59.510 61.111 2.29 0.00 0.00 6.13
84 85 2.576847 GCGCGGTGTATTTGCAGC 60.577 61.111 8.83 0.00 0.00 5.25
85 86 2.276617 CGCGCGGTGTATTTGCAG 60.277 61.111 24.84 0.00 0.00 4.41
86 87 2.735677 CTCGCGCGGTGTATTTGCA 61.736 57.895 31.69 4.97 0.00 4.08
87 88 1.762222 ATCTCGCGCGGTGTATTTGC 61.762 55.000 31.69 0.00 0.00 3.68
88 89 1.452025 CTATCTCGCGCGGTGTATTTG 59.548 52.381 31.69 9.09 0.00 2.32
89 90 1.767289 CTATCTCGCGCGGTGTATTT 58.233 50.000 31.69 10.46 0.00 1.40
90 91 0.663568 GCTATCTCGCGCGGTGTATT 60.664 55.000 31.69 11.55 0.00 1.89
91 92 1.081376 GCTATCTCGCGCGGTGTAT 60.081 57.895 31.69 19.28 0.00 2.29
92 93 2.330393 GCTATCTCGCGCGGTGTA 59.670 61.111 31.69 17.93 0.00 2.90
100 101 1.011451 GGCAGGAATCGCTATCTCGC 61.011 60.000 0.00 0.00 0.00 5.03
101 102 0.730834 CGGCAGGAATCGCTATCTCG 60.731 60.000 0.00 0.00 0.00 4.04
102 103 3.114558 CGGCAGGAATCGCTATCTC 57.885 57.895 0.00 0.00 0.00 2.75
115 116 4.520846 GAATTGGACGCGCGGCAG 62.521 66.667 39.18 8.50 0.00 4.85
118 119 1.157870 ATAAGGAATTGGACGCGCGG 61.158 55.000 35.22 16.31 0.00 6.46
119 120 1.191647 GTATAAGGAATTGGACGCGCG 59.808 52.381 30.96 30.96 0.00 6.86
120 121 1.529865 GGTATAAGGAATTGGACGCGC 59.470 52.381 5.73 0.00 0.00 6.86
121 122 1.790623 CGGTATAAGGAATTGGACGCG 59.209 52.381 3.53 3.53 0.00 6.01
122 123 1.529865 GCGGTATAAGGAATTGGACGC 59.470 52.381 0.00 0.00 37.66 5.19
123 124 1.790623 CGCGGTATAAGGAATTGGACG 59.209 52.381 0.00 0.00 0.00 4.79
124 125 1.529865 GCGCGGTATAAGGAATTGGAC 59.470 52.381 8.83 0.00 0.00 4.02
125 126 1.870580 CGCGCGGTATAAGGAATTGGA 60.871 52.381 24.84 0.00 0.00 3.53
126 127 0.511221 CGCGCGGTATAAGGAATTGG 59.489 55.000 24.84 0.00 0.00 3.16
127 128 0.110823 GCGCGCGGTATAAGGAATTG 60.111 55.000 33.06 0.00 0.00 2.32
128 129 1.554042 CGCGCGCGGTATAAGGAATT 61.554 55.000 43.28 0.00 35.56 2.17
129 130 2.019951 CGCGCGCGGTATAAGGAAT 61.020 57.895 43.28 0.00 35.56 3.01
130 131 2.656007 CGCGCGCGGTATAAGGAA 60.656 61.111 43.28 0.00 35.56 3.36
148 149 4.568876 GCGGACGCGCAATAACCG 62.569 66.667 5.73 15.02 45.26 4.44
187 188 0.661020 ATACCCAATTTAGCGCACGC 59.339 50.000 11.47 6.99 42.33 5.34
188 189 4.742438 AATATACCCAATTTAGCGCACG 57.258 40.909 11.47 0.00 0.00 5.34
189 190 4.679654 GCAAATATACCCAATTTAGCGCAC 59.320 41.667 11.47 0.00 0.00 5.34
190 191 4.555708 CGCAAATATACCCAATTTAGCGCA 60.556 41.667 11.47 0.00 37.21 6.09
191 192 3.911964 CGCAAATATACCCAATTTAGCGC 59.088 43.478 0.00 0.00 37.21 5.92
192 193 4.472286 CCGCAAATATACCCAATTTAGCG 58.528 43.478 0.00 0.00 40.02 4.26
193 194 4.234574 GCCGCAAATATACCCAATTTAGC 58.765 43.478 0.00 0.00 0.00 3.09
194 195 4.472286 CGCCGCAAATATACCCAATTTAG 58.528 43.478 0.00 0.00 0.00 1.85
195 196 3.304794 GCGCCGCAAATATACCCAATTTA 60.305 43.478 3.15 0.00 0.00 1.40
196 197 2.544903 GCGCCGCAAATATACCCAATTT 60.545 45.455 3.15 0.00 0.00 1.82
197 198 1.000717 GCGCCGCAAATATACCCAATT 60.001 47.619 3.15 0.00 0.00 2.32
198 199 0.596082 GCGCCGCAAATATACCCAAT 59.404 50.000 3.15 0.00 0.00 3.16
199 200 1.777030 CGCGCCGCAAATATACCCAA 61.777 55.000 10.75 0.00 0.00 4.12
200 201 2.248135 CGCGCCGCAAATATACCCA 61.248 57.895 10.75 0.00 0.00 4.51
201 202 2.554272 CGCGCCGCAAATATACCC 59.446 61.111 10.75 0.00 0.00 3.69
202 203 2.554272 CCGCGCCGCAAATATACC 59.446 61.111 10.75 0.00 0.00 2.73
203 204 2.127383 GCCGCGCCGCAAATATAC 60.127 61.111 15.97 0.00 0.00 1.47
204 205 3.707700 CGCCGCGCCGCAAATATA 61.708 61.111 20.32 0.00 0.00 0.86
224 225 4.666397 TAAACAGACGCCGCGCCA 62.666 61.111 13.88 0.00 0.00 5.69
225 226 3.849953 CTAAACAGACGCCGCGCC 61.850 66.667 13.88 0.35 0.00 6.53
226 227 4.500568 GCTAAACAGACGCCGCGC 62.501 66.667 13.88 5.86 0.00 6.86
227 228 4.191485 CGCTAAACAGACGCCGCG 62.191 66.667 12.14 12.14 34.50 6.46
228 229 4.500568 GCGCTAAACAGACGCCGC 62.501 66.667 0.00 0.00 46.63 6.53
232 233 2.809601 AGGCGCGCTAAACAGACG 60.810 61.111 32.29 0.00 0.00 4.18
233 234 1.566018 AACAGGCGCGCTAAACAGAC 61.566 55.000 32.29 11.63 0.00 3.51
234 235 1.301401 AACAGGCGCGCTAAACAGA 60.301 52.632 32.29 0.00 0.00 3.41
235 236 1.154413 CAACAGGCGCGCTAAACAG 60.154 57.895 32.29 13.50 0.00 3.16
236 237 2.612567 CCAACAGGCGCGCTAAACA 61.613 57.895 32.29 0.00 0.00 2.83
237 238 2.175811 CCAACAGGCGCGCTAAAC 59.824 61.111 32.29 14.56 0.00 2.01
238 239 2.031314 TCCAACAGGCGCGCTAAA 59.969 55.556 32.29 6.90 0.00 1.85
239 240 2.434185 CTCCAACAGGCGCGCTAA 60.434 61.111 32.29 7.65 0.00 3.09
240 241 4.451150 CCTCCAACAGGCGCGCTA 62.451 66.667 32.29 6.91 34.56 4.26
248 249 7.220030 AGTAGCATATAAATCACCTCCAACAG 58.780 38.462 0.00 0.00 0.00 3.16
249 250 7.136822 AGTAGCATATAAATCACCTCCAACA 57.863 36.000 0.00 0.00 0.00 3.33
250 251 6.651225 GGAGTAGCATATAAATCACCTCCAAC 59.349 42.308 0.00 0.00 36.74 3.77
251 252 6.328934 TGGAGTAGCATATAAATCACCTCCAA 59.671 38.462 0.00 0.00 42.05 3.53
252 253 5.843969 TGGAGTAGCATATAAATCACCTCCA 59.156 40.000 0.00 0.00 42.59 3.86
253 254 6.360370 TGGAGTAGCATATAAATCACCTCC 57.640 41.667 0.00 0.00 37.16 4.30
254 255 8.725148 CAAATGGAGTAGCATATAAATCACCTC 58.275 37.037 0.00 0.00 0.00 3.85
255 256 7.667219 CCAAATGGAGTAGCATATAAATCACCT 59.333 37.037 0.00 0.00 37.39 4.00
256 257 7.575720 GCCAAATGGAGTAGCATATAAATCACC 60.576 40.741 2.98 0.00 37.39 4.02
257 258 7.308435 GCCAAATGGAGTAGCATATAAATCAC 58.692 38.462 2.98 0.00 37.39 3.06
258 259 6.434028 GGCCAAATGGAGTAGCATATAAATCA 59.566 38.462 2.98 0.00 37.39 2.57
259 260 6.660949 AGGCCAAATGGAGTAGCATATAAATC 59.339 38.462 5.01 0.00 37.39 2.17
260 261 6.555711 AGGCCAAATGGAGTAGCATATAAAT 58.444 36.000 5.01 0.00 37.39 1.40
261 262 5.952387 AGGCCAAATGGAGTAGCATATAAA 58.048 37.500 5.01 0.00 37.39 1.40
303 304 0.605589 ACAAGAGGCTCGAGACCTTG 59.394 55.000 31.46 31.46 37.77 3.61
334 335 4.127171 CGGACAAGATCGATACCCAAATT 58.873 43.478 0.00 0.00 0.00 1.82
335 336 3.386726 TCGGACAAGATCGATACCCAAAT 59.613 43.478 0.00 0.00 0.00 2.32
336 337 2.761767 TCGGACAAGATCGATACCCAAA 59.238 45.455 0.00 0.00 0.00 3.28
338 339 1.954382 CTCGGACAAGATCGATACCCA 59.046 52.381 0.00 0.00 34.77 4.51
339 340 1.955080 ACTCGGACAAGATCGATACCC 59.045 52.381 0.00 0.00 34.77 3.69
340 341 3.315749 AGAACTCGGACAAGATCGATACC 59.684 47.826 0.00 0.00 34.77 2.73
341 342 4.555348 AGAACTCGGACAAGATCGATAC 57.445 45.455 0.00 0.00 34.77 2.24
342 343 6.347483 CGATTAGAACTCGGACAAGATCGATA 60.347 42.308 0.00 0.00 36.82 2.92
343 344 5.561145 CGATTAGAACTCGGACAAGATCGAT 60.561 44.000 0.00 0.00 36.82 3.59
344 345 4.260661 CGATTAGAACTCGGACAAGATCGA 60.261 45.833 0.00 0.00 36.82 3.59
345 346 3.969352 CGATTAGAACTCGGACAAGATCG 59.031 47.826 0.00 0.00 32.58 3.69
346 347 3.731717 GCGATTAGAACTCGGACAAGATC 59.268 47.826 0.00 0.00 36.65 2.75
379 380 2.931325 ACAGAAAGCGAAAACACGTACA 59.069 40.909 0.00 0.00 35.59 2.90
427 431 6.814146 GTGAATCCGAAAAGAACTCTATGACT 59.186 38.462 0.00 0.00 0.00 3.41
466 470 9.372369 ACGAAAAACTTAATTCTCATCTAGGAG 57.628 33.333 0.00 0.00 36.21 3.69
471 475 9.706691 TGTCTACGAAAAACTTAATTCTCATCT 57.293 29.630 0.00 0.00 0.00 2.90
490 494 8.734933 CGTACTTAATTCTCATCTTTGTCTACG 58.265 37.037 0.00 0.00 0.00 3.51
491 495 9.021863 CCGTACTTAATTCTCATCTTTGTCTAC 57.978 37.037 0.00 0.00 0.00 2.59
599 3201 2.284952 GCAAAAGCATGCAAAGACGTTT 59.715 40.909 21.98 6.74 45.70 3.60
624 3226 5.658468 ACTAGTAAAAAGGGCTAAGCTACG 58.342 41.667 0.00 0.00 0.00 3.51
667 3270 5.245751 TGCCTCAAATGTGATGGTTTTATGT 59.754 36.000 0.00 0.00 31.85 2.29
717 3320 5.289675 CGCCGTGGATTTTGCAAATAATTAA 59.710 36.000 13.65 0.00 0.00 1.40
733 3336 0.107897 ATTACTGAATGCGCCGTGGA 60.108 50.000 4.18 0.00 0.00 4.02
780 3383 1.202114 ACGCGATCAAACATGGCAAAT 59.798 42.857 15.93 0.00 0.00 2.32
959 3564 1.351080 CCTCTGCTCCCCATGGTGAT 61.351 60.000 11.73 0.00 0.00 3.06
960 3565 1.997311 CCTCTGCTCCCCATGGTGA 60.997 63.158 11.73 3.33 0.00 4.02
961 3566 1.565390 TTCCTCTGCTCCCCATGGTG 61.565 60.000 11.73 0.00 0.00 4.17
962 3567 1.229951 TTCCTCTGCTCCCCATGGT 60.230 57.895 11.73 0.00 0.00 3.55
963 3568 1.225704 GTTCCTCTGCTCCCCATGG 59.774 63.158 4.14 4.14 0.00 3.66
964 3569 1.153289 CGTTCCTCTGCTCCCCATG 60.153 63.158 0.00 0.00 0.00 3.66
965 3570 1.613630 ACGTTCCTCTGCTCCCCAT 60.614 57.895 0.00 0.00 0.00 4.00
1210 3818 1.136252 CCAACTGCTCAACGAATGTCG 60.136 52.381 0.00 0.00 46.93 4.35
1245 3854 1.283029 CACACCCATGTCCTTCTCCAT 59.717 52.381 0.00 0.00 36.72 3.41
1246 3855 0.692476 CACACCCATGTCCTTCTCCA 59.308 55.000 0.00 0.00 36.72 3.86
1648 4760 1.048724 TAGCTAGGCGGCTTGGTGAT 61.049 55.000 29.34 14.20 42.97 3.06
1655 4767 2.565645 CGGTGATAGCTAGGCGGCT 61.566 63.158 18.33 18.33 45.29 5.52
1748 5314 4.918129 ACGACGACTTGTGCGCGT 62.918 61.111 8.43 0.00 41.45 6.01
1754 5320 1.370172 GCTCACGACGACGACTTGT 60.370 57.895 15.32 0.00 42.66 3.16
1765 5331 0.461548 CTAAGCCTGGATGCTCACGA 59.538 55.000 0.00 0.00 41.80 4.35
1782 5348 2.443390 GGGGAGTAGGCCGTGCTA 60.443 66.667 0.00 0.00 0.00 3.49
1855 5421 1.150536 GGAGGACCTGTTGTTGCCA 59.849 57.895 0.00 0.00 0.00 4.92
1950 5743 2.204034 TGCACTGGGAGGGACAGA 59.796 61.111 0.00 0.00 39.24 3.41
1980 5773 8.846943 TCACTCTCATACACATTACAACAAAT 57.153 30.769 0.00 0.00 0.00 2.32
1996 5790 6.015918 TCTTTCTCCTCTCTTTCACTCTCAT 58.984 40.000 0.00 0.00 0.00 2.90
2033 5827 1.278172 CGTGTGCGTCTTGACTCCTG 61.278 60.000 0.00 0.00 0.00 3.86
2034 5828 1.007271 CGTGTGCGTCTTGACTCCT 60.007 57.895 0.00 0.00 0.00 3.69
2035 5829 3.538841 CGTGTGCGTCTTGACTCC 58.461 61.111 0.00 0.00 0.00 3.85
2159 5955 1.494766 GCAAAAACCACCGCGCATTT 61.495 50.000 8.75 0.00 0.00 2.32
2286 6085 2.224426 ACACGGCACTCTAAATTGTCCA 60.224 45.455 0.00 0.00 0.00 4.02
2317 6116 7.174946 GGGATGATGAAACCACGTTGAATATAT 59.825 37.037 0.00 0.00 0.00 0.86
2318 6117 6.485313 GGGATGATGAAACCACGTTGAATATA 59.515 38.462 0.00 0.00 0.00 0.86
2325 6124 2.577606 TGGGATGATGAAACCACGTT 57.422 45.000 0.00 0.00 0.00 3.99
2334 6133 4.416513 ACAGGGTTCAATATGGGATGATGA 59.583 41.667 0.00 0.00 0.00 2.92
2339 6138 5.930209 ACATACAGGGTTCAATATGGGAT 57.070 39.130 0.00 0.00 30.71 3.85
2425 6224 4.122776 AGGCAGCTCACACGATTTTATAG 58.877 43.478 0.00 0.00 0.00 1.31
2446 6246 7.118101 ACAAATAACTGCATATGCCACAAAAAG 59.882 33.333 24.54 15.15 41.18 2.27
2516 6316 9.809096 TGTGAGAAATTGCAAGTGTTATTTTTA 57.191 25.926 4.94 0.00 0.00 1.52
2517 6317 8.715191 TGTGAGAAATTGCAAGTGTTATTTTT 57.285 26.923 4.94 0.00 0.00 1.94
2525 6325 6.684131 CGTACATATGTGAGAAATTGCAAGTG 59.316 38.462 18.81 0.00 0.00 3.16
2539 6339 9.350357 ACTTTTTAGTGTAGACGTACATATGTG 57.650 33.333 18.81 5.13 41.29 3.21
2552 6352 7.589954 GCAACCATGTTGTACTTTTTAGTGTAG 59.410 37.037 8.58 0.00 0.00 2.74
2561 6361 6.003950 AGACATAGCAACCATGTTGTACTTT 58.996 36.000 8.58 0.00 36.76 2.66
2562 6362 5.412594 CAGACATAGCAACCATGTTGTACTT 59.587 40.000 8.58 0.00 36.76 2.24
2563 6363 4.937620 CAGACATAGCAACCATGTTGTACT 59.062 41.667 8.58 1.58 36.76 2.73
2564 6364 4.437390 GCAGACATAGCAACCATGTTGTAC 60.437 45.833 8.58 0.00 36.76 2.90
2565 6365 3.689161 GCAGACATAGCAACCATGTTGTA 59.311 43.478 8.58 1.58 36.76 2.41
2566 6366 2.489329 GCAGACATAGCAACCATGTTGT 59.511 45.455 8.58 0.00 36.76 3.32
2567 6367 2.476686 CGCAGACATAGCAACCATGTTG 60.477 50.000 2.65 2.65 36.76 3.33
2568 6368 1.739466 CGCAGACATAGCAACCATGTT 59.261 47.619 0.00 0.00 36.76 2.71
2569 6369 1.339055 ACGCAGACATAGCAACCATGT 60.339 47.619 0.00 0.00 39.31 3.21
2570 6370 1.372582 ACGCAGACATAGCAACCATG 58.627 50.000 0.00 0.00 0.00 3.66
2571 6371 2.009774 GAACGCAGACATAGCAACCAT 58.990 47.619 0.00 0.00 0.00 3.55
2572 6372 1.438651 GAACGCAGACATAGCAACCA 58.561 50.000 0.00 0.00 0.00 3.67
2573 6373 0.727398 GGAACGCAGACATAGCAACC 59.273 55.000 0.00 0.00 0.00 3.77
2574 6374 1.438651 TGGAACGCAGACATAGCAAC 58.561 50.000 0.00 0.00 0.00 4.17
2575 6375 2.401583 ATGGAACGCAGACATAGCAA 57.598 45.000 0.00 0.00 0.00 3.91
2576 6376 2.224042 CCTATGGAACGCAGACATAGCA 60.224 50.000 0.00 0.00 41.55 3.49
2577 6377 2.408050 CCTATGGAACGCAGACATAGC 58.592 52.381 0.00 0.00 41.55 2.97
2578 6378 2.408050 GCCTATGGAACGCAGACATAG 58.592 52.381 0.00 0.00 42.19 2.23
2579 6379 1.070134 GGCCTATGGAACGCAGACATA 59.930 52.381 0.00 0.00 0.00 2.29
2580 6380 0.179045 GGCCTATGGAACGCAGACAT 60.179 55.000 0.00 0.00 0.00 3.06
2581 6381 1.220749 GGCCTATGGAACGCAGACA 59.779 57.895 0.00 0.00 0.00 3.41
2582 6382 1.883084 CGGCCTATGGAACGCAGAC 60.883 63.158 0.00 0.00 0.00 3.51
2583 6383 1.399744 ATCGGCCTATGGAACGCAGA 61.400 55.000 0.00 0.00 0.00 4.26
2584 6384 0.532862 AATCGGCCTATGGAACGCAG 60.533 55.000 0.00 0.00 0.00 5.18
2585 6385 0.753867 TAATCGGCCTATGGAACGCA 59.246 50.000 0.00 0.00 0.00 5.24
2586 6386 2.094762 ATAATCGGCCTATGGAACGC 57.905 50.000 0.00 0.00 0.00 4.84
2587 6387 3.930848 GGTAATAATCGGCCTATGGAACG 59.069 47.826 0.00 0.00 0.00 3.95
2588 6388 5.161943 AGGTAATAATCGGCCTATGGAAC 57.838 43.478 0.00 0.00 0.00 3.62
2589 6389 4.841813 TGAGGTAATAATCGGCCTATGGAA 59.158 41.667 0.00 0.00 0.00 3.53
2590 6390 4.422057 TGAGGTAATAATCGGCCTATGGA 58.578 43.478 0.00 0.00 0.00 3.41
2591 6391 4.759782 CTGAGGTAATAATCGGCCTATGG 58.240 47.826 0.00 0.00 0.00 2.74
2592 6392 4.081420 AGCTGAGGTAATAATCGGCCTATG 60.081 45.833 0.00 0.00 46.87 2.23
2593 6393 4.081420 CAGCTGAGGTAATAATCGGCCTAT 60.081 45.833 8.42 0.00 46.87 2.57
2594 6394 3.258372 CAGCTGAGGTAATAATCGGCCTA 59.742 47.826 8.42 0.00 46.87 3.93
2595 6395 2.037772 CAGCTGAGGTAATAATCGGCCT 59.962 50.000 8.42 0.00 46.87 5.19
2596 6396 2.417719 CAGCTGAGGTAATAATCGGCC 58.582 52.381 8.42 0.00 46.87 6.13
2597 6397 1.801178 GCAGCTGAGGTAATAATCGGC 59.199 52.381 20.43 0.00 46.18 5.54
2598 6398 2.802816 GTGCAGCTGAGGTAATAATCGG 59.197 50.000 20.43 0.00 0.00 4.18
2599 6399 3.722147 AGTGCAGCTGAGGTAATAATCG 58.278 45.455 20.43 0.00 0.00 3.34
2600 6400 6.442513 AAAAGTGCAGCTGAGGTAATAATC 57.557 37.500 20.43 0.00 0.00 1.75
2601 6401 6.840780 AAAAAGTGCAGCTGAGGTAATAAT 57.159 33.333 20.43 0.00 0.00 1.28
2622 6422 6.222038 TGTGCAACTACACCCATTTAAAAA 57.778 33.333 0.00 0.00 39.93 1.94
2623 6423 5.854010 TGTGCAACTACACCCATTTAAAA 57.146 34.783 0.00 0.00 39.93 1.52
2624 6424 6.412362 AATGTGCAACTACACCCATTTAAA 57.588 33.333 0.00 0.00 39.93 1.52
2625 6425 6.412362 AAATGTGCAACTACACCCATTTAA 57.588 33.333 6.01 0.00 39.93 1.52
2626 6426 6.412362 AAAATGTGCAACTACACCCATTTA 57.588 33.333 7.74 0.00 39.93 1.40
2627 6427 4.953940 AAATGTGCAACTACACCCATTT 57.046 36.364 0.00 0.00 39.93 2.32
2628 6428 4.953940 AAAATGTGCAACTACACCCATT 57.046 36.364 0.00 0.00 39.93 3.16
2629 6429 6.412362 TTTAAAATGTGCAACTACACCCAT 57.588 33.333 0.00 0.00 39.93 4.00
2630 6430 5.854010 TTTAAAATGTGCAACTACACCCA 57.146 34.783 0.00 0.00 39.93 4.51
2654 6454 2.422127 ACACTGTGCTAGTTGCGTTTTT 59.578 40.909 7.90 0.00 46.63 1.94
2655 6455 2.014128 ACACTGTGCTAGTTGCGTTTT 58.986 42.857 7.90 0.00 46.63 2.43
2656 6456 1.663695 ACACTGTGCTAGTTGCGTTT 58.336 45.000 7.90 0.00 46.63 3.60
2657 6457 2.519377 TACACTGTGCTAGTTGCGTT 57.481 45.000 7.90 0.00 46.63 4.84
2658 6458 2.337583 CATACACTGTGCTAGTTGCGT 58.662 47.619 7.90 0.00 46.63 5.24
2659 6459 1.061131 GCATACACTGTGCTAGTTGCG 59.939 52.381 7.90 0.00 46.63 4.85
2660 6460 2.076100 TGCATACACTGTGCTAGTTGC 58.924 47.619 7.90 10.24 42.92 4.17
2661 6461 4.952262 AATGCATACACTGTGCTAGTTG 57.048 40.909 7.90 0.17 42.92 3.16
2662 6462 5.964958 AAAATGCATACACTGTGCTAGTT 57.035 34.783 7.90 0.00 42.92 2.24
2663 6463 8.908786 ATATAAAATGCATACACTGTGCTAGT 57.091 30.769 7.90 0.00 42.92 2.57
2666 6466 9.304731 CAAAATATAAAATGCATACACTGTGCT 57.695 29.630 7.90 0.00 42.92 4.40
2667 6467 9.299963 TCAAAATATAAAATGCATACACTGTGC 57.700 29.630 7.90 0.00 42.81 4.57
2685 6485 9.736414 AGTGCAGCTGAGATATAATCAAAATAT 57.264 29.630 20.43 0.00 0.00 1.28
2686 6486 9.565090 AAGTGCAGCTGAGATATAATCAAAATA 57.435 29.630 20.43 0.00 0.00 1.40
2687 6487 8.461249 AAGTGCAGCTGAGATATAATCAAAAT 57.539 30.769 20.43 0.00 0.00 1.82
2688 6488 7.870509 AAGTGCAGCTGAGATATAATCAAAA 57.129 32.000 20.43 0.00 0.00 2.44
2689 6489 9.565090 AATAAGTGCAGCTGAGATATAATCAAA 57.435 29.630 20.43 0.00 0.00 2.69
2690 6490 9.565090 AAATAAGTGCAGCTGAGATATAATCAA 57.435 29.630 20.43 0.00 0.00 2.57
2691 6491 9.565090 AAAATAAGTGCAGCTGAGATATAATCA 57.435 29.630 20.43 0.00 0.00 2.57
2693 6493 9.565090 TGAAAATAAGTGCAGCTGAGATATAAT 57.435 29.630 20.43 0.00 0.00 1.28
2694 6494 8.962884 TGAAAATAAGTGCAGCTGAGATATAA 57.037 30.769 20.43 0.00 0.00 0.98
2695 6495 8.424133 TCTGAAAATAAGTGCAGCTGAGATATA 58.576 33.333 20.43 3.49 0.00 0.86
2696 6496 7.278135 TCTGAAAATAAGTGCAGCTGAGATAT 58.722 34.615 20.43 6.90 0.00 1.63
2697 6497 6.643388 TCTGAAAATAAGTGCAGCTGAGATA 58.357 36.000 20.43 4.63 0.00 1.98
2698 6498 5.494724 TCTGAAAATAAGTGCAGCTGAGAT 58.505 37.500 20.43 2.20 0.00 2.75
2699 6499 4.898320 TCTGAAAATAAGTGCAGCTGAGA 58.102 39.130 20.43 3.36 0.00 3.27
2700 6500 5.618056 TTCTGAAAATAAGTGCAGCTGAG 57.382 39.130 20.43 0.58 0.00 3.35
2701 6501 6.016024 ACATTTCTGAAAATAAGTGCAGCTGA 60.016 34.615 20.43 0.00 33.27 4.26
2702 6502 6.089016 CACATTTCTGAAAATAAGTGCAGCTG 59.911 38.462 10.11 10.11 33.27 4.24
2703 6503 6.154445 CACATTTCTGAAAATAAGTGCAGCT 58.846 36.000 6.95 0.00 33.27 4.24
2704 6504 5.164022 GCACATTTCTGAAAATAAGTGCAGC 60.164 40.000 28.23 17.61 45.26 5.25
2705 6505 6.385537 GCACATTTCTGAAAATAAGTGCAG 57.614 37.500 28.23 13.90 45.26 4.41
2707 6507 6.421801 AGTTGCACATTTCTGAAAATAAGTGC 59.578 34.615 27.41 27.41 45.67 4.40
2708 6508 7.436080 ACAGTTGCACATTTCTGAAAATAAGTG 59.564 33.333 6.95 13.39 34.37 3.16
2709 6509 7.491682 ACAGTTGCACATTTCTGAAAATAAGT 58.508 30.769 6.95 1.60 33.27 2.24
2710 6510 7.648908 TGACAGTTGCACATTTCTGAAAATAAG 59.351 33.333 6.95 1.00 33.27 1.73
2711 6511 7.487484 TGACAGTTGCACATTTCTGAAAATAA 58.513 30.769 6.95 0.00 33.27 1.40
2712 6512 7.036996 TGACAGTTGCACATTTCTGAAAATA 57.963 32.000 6.95 0.00 33.27 1.40
2713 6513 5.904941 TGACAGTTGCACATTTCTGAAAAT 58.095 33.333 6.95 0.00 35.43 1.82
2714 6514 5.321959 TGACAGTTGCACATTTCTGAAAA 57.678 34.783 6.95 0.00 0.00 2.29
2715 6515 4.979943 TGACAGTTGCACATTTCTGAAA 57.020 36.364 5.15 5.15 0.00 2.69
2716 6516 5.518848 AATGACAGTTGCACATTTCTGAA 57.481 34.783 0.00 0.00 31.46 3.02
2717 6517 5.283294 CAAATGACAGTTGCACATTTCTGA 58.717 37.500 2.25 0.00 40.63 3.27
2718 6518 5.570262 CAAATGACAGTTGCACATTTCTG 57.430 39.130 2.25 5.27 40.63 3.02
2741 6541 9.708222 GAAAATACACACATAGAAGCATAGTTG 57.292 33.333 0.00 0.00 0.00 3.16
2742 6542 9.672673 AGAAAATACACACATAGAAGCATAGTT 57.327 29.630 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.