Multiple sequence alignment - TraesCS3A01G327400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G327400 chr3A 100.000 2517 0 0 1 2517 572344922 572347438 0.000000e+00 4649.0
1 TraesCS3A01G327400 chr3A 92.797 236 16 1 1684 1919 51871785 51871551 8.620000e-90 340.0
2 TraesCS3A01G327400 chr3A 92.797 236 16 1 1684 1919 633115859 633115625 8.620000e-90 340.0
3 TraesCS3A01G327400 chr2A 96.346 821 21 7 1 818 688416952 688416138 0.000000e+00 1341.0
4 TraesCS3A01G327400 chr2A 95.405 827 30 6 1 822 212637174 212636351 0.000000e+00 1310.0
5 TraesCS3A01G327400 chr2A 92.822 808 47 8 1 805 651979674 651978875 0.000000e+00 1160.0
6 TraesCS3A01G327400 chr2B 94.921 827 30 9 1 822 436540889 436541708 0.000000e+00 1284.0
7 TraesCS3A01G327400 chr2B 93.292 805 43 8 1 801 774710491 774709694 0.000000e+00 1177.0
8 TraesCS3A01G327400 chr2D 94.692 829 35 6 1 825 155989105 155988282 0.000000e+00 1279.0
9 TraesCS3A01G327400 chr2D 94.691 810 33 7 1 805 446601712 446602516 0.000000e+00 1249.0
10 TraesCS3A01G327400 chr3B 92.583 809 50 9 1 805 59329972 59329170 0.000000e+00 1153.0
11 TraesCS3A01G327400 chr3B 90.268 596 40 5 856 1443 566995019 566995604 0.000000e+00 763.0
12 TraesCS3A01G327400 chr3B 92.797 236 16 1 1684 1919 368852357 368852591 8.620000e-90 340.0
13 TraesCS3A01G327400 chr3B 90.345 145 10 2 1405 1545 566995599 566995743 1.190000e-43 187.0
14 TraesCS3A01G327400 chr5B 94.521 730 32 7 1 728 710178106 710178829 0.000000e+00 1120.0
15 TraesCS3A01G327400 chr5B 97.436 117 3 0 1565 1681 273284665 273284549 1.530000e-47 200.0
16 TraesCS3A01G327400 chr5B 95.402 87 4 0 1919 2005 695875882 695875968 3.380000e-29 139.0
17 TraesCS3A01G327400 chr3D 89.645 705 51 8 856 1545 433763554 433764251 0.000000e+00 878.0
18 TraesCS3A01G327400 chr3D 84.411 526 59 17 2006 2517 433764252 433764768 1.740000e-136 496.0
19 TraesCS3A01G327400 chr3D 80.352 341 54 6 2188 2516 14238526 14238187 1.930000e-61 246.0
20 TraesCS3A01G327400 chr3D 80.597 335 52 4 2194 2515 501309621 501309287 1.930000e-61 246.0
21 TraesCS3A01G327400 chr3D 79.586 338 56 5 2193 2517 390673516 390673179 1.950000e-56 230.0
22 TraesCS3A01G327400 chr3D 95.402 87 4 0 1919 2005 498442884 498442798 3.380000e-29 139.0
23 TraesCS3A01G327400 chr7A 93.220 236 15 1 1684 1919 46392333 46392567 1.850000e-91 346.0
24 TraesCS3A01G327400 chr7A 92.797 236 16 1 1684 1919 60304232 60303998 8.620000e-90 340.0
25 TraesCS3A01G327400 chr7A 100.000 29 0 0 2233 2261 692057060 692057032 1.000000e-03 54.7
26 TraesCS3A01G327400 chr7B 92.797 236 16 1 1684 1919 644472054 644471820 8.620000e-90 340.0
27 TraesCS3A01G327400 chr7B 79.288 309 47 9 2222 2517 193528379 193528075 1.530000e-47 200.0
28 TraesCS3A01G327400 chr7B 95.402 87 4 0 1919 2005 47217243 47217157 3.380000e-29 139.0
29 TraesCS3A01G327400 chr7B 95.402 87 4 0 1919 2005 139621797 139621883 3.380000e-29 139.0
30 TraesCS3A01G327400 chr7B 95.402 87 4 0 1919 2005 698128799 698128885 3.380000e-29 139.0
31 TraesCS3A01G327400 chr7B 95.402 87 4 0 1919 2005 716798033 716798119 3.380000e-29 139.0
32 TraesCS3A01G327400 chr4D 92.797 236 16 1 1684 1919 123721114 123720880 8.620000e-90 340.0
33 TraesCS3A01G327400 chr4D 92.373 236 17 1 1684 1919 241167271 241167037 4.010000e-88 335.0
34 TraesCS3A01G327400 chr4D 81.765 340 46 12 2193 2517 341527995 341527657 1.150000e-68 270.0
35 TraesCS3A01G327400 chr4D 92.414 145 3 1 1545 1681 123389351 123389495 1.530000e-47 200.0
36 TraesCS3A01G327400 chr1B 92.797 236 16 1 1684 1919 672483766 672483532 8.620000e-90 340.0
37 TraesCS3A01G327400 chr1B 80.826 339 51 7 2193 2517 520780874 520780536 1.160000e-63 254.0
38 TraesCS3A01G327400 chr6D 80.347 346 54 10 2186 2517 388207161 388207506 1.490000e-62 250.0
39 TraesCS3A01G327400 chr6D 95.294 85 4 0 1919 2003 430467704 430467788 4.370000e-28 135.0
40 TraesCS3A01G327400 chr5D 80.409 342 52 6 2191 2517 498031715 498031374 1.930000e-61 246.0
41 TraesCS3A01G327400 chr6B 80.117 342 52 8 2192 2517 93421099 93420758 9.000000e-60 241.0
42 TraesCS3A01G327400 chr7D 79.495 317 47 10 2217 2517 568233102 568232788 2.540000e-50 209.0
43 TraesCS3A01G327400 chr7D 97.436 117 3 0 1565 1681 382074500 382074616 1.530000e-47 200.0
44 TraesCS3A01G327400 chr7D 97.436 117 3 0 1565 1681 626629090 626628974 1.530000e-47 200.0
45 TraesCS3A01G327400 chr7D 97.436 117 3 0 1565 1681 626723342 626723226 1.530000e-47 200.0
46 TraesCS3A01G327400 chr7D 84.000 100 13 2 2217 2315 223220288 223220191 2.670000e-15 93.5
47 TraesCS3A01G327400 chrUn 97.436 117 3 0 1565 1681 170996155 170996271 1.530000e-47 200.0
48 TraesCS3A01G327400 chrUn 92.414 145 3 1 1545 1681 456050618 456050762 1.530000e-47 200.0
49 TraesCS3A01G327400 chrUn 95.294 85 4 0 1919 2003 246699185 246699269 4.370000e-28 135.0
50 TraesCS3A01G327400 chr4B 97.436 117 3 0 1565 1681 623335212 623335328 1.530000e-47 200.0
51 TraesCS3A01G327400 chr4B 76.510 298 55 11 2234 2517 526721187 526720891 5.610000e-32 148.0
52 TraesCS3A01G327400 chr1D 97.436 117 3 0 1565 1681 212457716 212457600 1.530000e-47 200.0
53 TraesCS3A01G327400 chr1D 85.890 163 17 5 2194 2352 411521412 411521572 4.310000e-38 169.0
54 TraesCS3A01G327400 chr5A 76.945 347 56 17 2190 2517 539071160 539071501 2.570000e-40 176.0
55 TraesCS3A01G327400 chr4A 95.402 87 4 0 1919 2005 295191821 295191907 3.380000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G327400 chr3A 572344922 572347438 2516 False 4649 4649 100.0000 1 2517 1 chr3A.!!$F1 2516
1 TraesCS3A01G327400 chr2A 688416138 688416952 814 True 1341 1341 96.3460 1 818 1 chr2A.!!$R3 817
2 TraesCS3A01G327400 chr2A 212636351 212637174 823 True 1310 1310 95.4050 1 822 1 chr2A.!!$R1 821
3 TraesCS3A01G327400 chr2A 651978875 651979674 799 True 1160 1160 92.8220 1 805 1 chr2A.!!$R2 804
4 TraesCS3A01G327400 chr2B 436540889 436541708 819 False 1284 1284 94.9210 1 822 1 chr2B.!!$F1 821
5 TraesCS3A01G327400 chr2B 774709694 774710491 797 True 1177 1177 93.2920 1 801 1 chr2B.!!$R1 800
6 TraesCS3A01G327400 chr2D 155988282 155989105 823 True 1279 1279 94.6920 1 825 1 chr2D.!!$R1 824
7 TraesCS3A01G327400 chr2D 446601712 446602516 804 False 1249 1249 94.6910 1 805 1 chr2D.!!$F1 804
8 TraesCS3A01G327400 chr3B 59329170 59329972 802 True 1153 1153 92.5830 1 805 1 chr3B.!!$R1 804
9 TraesCS3A01G327400 chr3B 566995019 566995743 724 False 475 763 90.3065 856 1545 2 chr3B.!!$F2 689
10 TraesCS3A01G327400 chr5B 710178106 710178829 723 False 1120 1120 94.5210 1 728 1 chr5B.!!$F2 727
11 TraesCS3A01G327400 chr3D 433763554 433764768 1214 False 687 878 87.0280 856 2517 2 chr3D.!!$F1 1661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 852 0.033504 CAGTGGGTCGTTAGCACAGT 59.966 55.0 0.0 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2062 0.110486 GTGAGGGAAGGTTGGCTTGA 59.89 55.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
316 320 3.081710 AGTAAATTTTCACCGGGGGAG 57.918 47.619 2.42 0.00 0.00 4.30
361 368 6.461698 CGATAATCTTCGTGTAAAGTTTGCAC 59.538 38.462 22.52 22.52 41.97 4.57
451 459 9.295825 ACCTTTGTCATGTTATTTGTTATCAGA 57.704 29.630 0.00 0.00 0.00 3.27
780 797 7.717875 TCGGTGGAAAGAAAATCTAGAAGAAAA 59.282 33.333 0.00 0.00 0.00 2.29
810 828 1.272807 AACGGGAGGATCGAAGGAAA 58.727 50.000 0.00 0.00 34.37 3.13
829 847 2.048503 ACGCAGTGGGTCGTTAGC 60.049 61.111 7.07 0.00 42.51 3.09
830 848 2.048597 CGCAGTGGGTCGTTAGCA 60.049 61.111 0.00 0.00 0.00 3.49
831 849 2.380410 CGCAGTGGGTCGTTAGCAC 61.380 63.158 0.00 0.00 0.00 4.40
832 850 1.301401 GCAGTGGGTCGTTAGCACA 60.301 57.895 0.00 0.00 0.00 4.57
833 851 1.291877 GCAGTGGGTCGTTAGCACAG 61.292 60.000 0.00 0.00 0.00 3.66
834 852 0.033504 CAGTGGGTCGTTAGCACAGT 59.966 55.000 0.00 0.00 0.00 3.55
835 853 0.317479 AGTGGGTCGTTAGCACAGTC 59.683 55.000 0.00 0.00 0.00 3.51
836 854 0.669625 GTGGGTCGTTAGCACAGTCC 60.670 60.000 0.00 0.00 0.00 3.85
837 855 1.116536 TGGGTCGTTAGCACAGTCCA 61.117 55.000 0.00 0.00 0.00 4.02
838 856 0.034337 GGGTCGTTAGCACAGTCCAA 59.966 55.000 0.00 0.00 0.00 3.53
839 857 1.145803 GGTCGTTAGCACAGTCCAAC 58.854 55.000 0.00 0.00 0.00 3.77
840 858 1.539496 GGTCGTTAGCACAGTCCAACA 60.539 52.381 0.00 0.00 0.00 3.33
841 859 2.206750 GTCGTTAGCACAGTCCAACAA 58.793 47.619 0.00 0.00 0.00 2.83
842 860 2.610374 GTCGTTAGCACAGTCCAACAAA 59.390 45.455 0.00 0.00 0.00 2.83
843 861 3.250040 GTCGTTAGCACAGTCCAACAAAT 59.750 43.478 0.00 0.00 0.00 2.32
844 862 4.449743 GTCGTTAGCACAGTCCAACAAATA 59.550 41.667 0.00 0.00 0.00 1.40
845 863 5.121768 GTCGTTAGCACAGTCCAACAAATAT 59.878 40.000 0.00 0.00 0.00 1.28
846 864 6.311935 GTCGTTAGCACAGTCCAACAAATATA 59.688 38.462 0.00 0.00 0.00 0.86
847 865 6.533723 TCGTTAGCACAGTCCAACAAATATAG 59.466 38.462 0.00 0.00 0.00 1.31
848 866 6.487103 GTTAGCACAGTCCAACAAATATAGC 58.513 40.000 0.00 0.00 0.00 2.97
849 867 4.588899 AGCACAGTCCAACAAATATAGCA 58.411 39.130 0.00 0.00 0.00 3.49
850 868 5.195940 AGCACAGTCCAACAAATATAGCAT 58.804 37.500 0.00 0.00 0.00 3.79
851 869 6.356556 AGCACAGTCCAACAAATATAGCATA 58.643 36.000 0.00 0.00 0.00 3.14
852 870 6.828273 AGCACAGTCCAACAAATATAGCATAA 59.172 34.615 0.00 0.00 0.00 1.90
853 871 6.912591 GCACAGTCCAACAAATATAGCATAAC 59.087 38.462 0.00 0.00 0.00 1.89
854 872 7.415095 GCACAGTCCAACAAATATAGCATAACA 60.415 37.037 0.00 0.00 0.00 2.41
886 904 9.327628 GTTCAAATATTTAGTACTCTTCCCTCC 57.672 37.037 0.00 0.00 0.00 4.30
909 927 0.950555 CTGTGGACCCATGACGTGTG 60.951 60.000 0.00 0.00 0.00 3.82
912 930 1.671054 GGACCCATGACGTGTGGTG 60.671 63.158 13.78 8.81 33.29 4.17
914 932 3.422303 CCCATGACGTGTGGTGCG 61.422 66.667 13.78 0.00 34.87 5.34
955 973 2.062070 GTCAACTCTGGACCAGGCT 58.938 57.895 21.56 3.85 31.51 4.58
972 990 3.314635 CAGGCTTAAAGATCCATGAGCAC 59.685 47.826 12.31 4.43 32.01 4.40
982 1000 3.125573 ATGAGCACAGCAGCTGCG 61.126 61.111 31.78 26.80 46.75 5.18
1008 1027 0.742281 CACAGCATCGAGTTGGAGGG 60.742 60.000 0.00 0.00 31.96 4.30
1127 1154 2.350514 GTCCTGCTCTGCTTGGCT 59.649 61.111 0.00 0.00 0.00 4.75
1270 1300 4.363990 CTCCACACTGCTCGCCGT 62.364 66.667 0.00 0.00 0.00 5.68
1314 1344 2.925306 GCTTTGAATCAGCAAGCACCTG 60.925 50.000 13.13 0.00 37.22 4.00
1329 1359 2.808202 GCACCTGGCGATTCTGTGATAT 60.808 50.000 0.00 0.00 0.00 1.63
1337 1367 2.549563 CGATTCTGTGATATGGCTGGCT 60.550 50.000 2.00 0.00 0.00 4.75
1338 1368 3.306294 CGATTCTGTGATATGGCTGGCTA 60.306 47.826 2.00 0.00 0.00 3.93
1339 1369 3.758755 TTCTGTGATATGGCTGGCTAG 57.241 47.619 2.00 0.00 0.00 3.42
1369 1399 2.954318 AGCCCAGCATATGTGATTTGTC 59.046 45.455 4.29 0.00 0.00 3.18
1384 1414 4.099113 TGATTTGTCTGGTGTGCAATTTGA 59.901 37.500 0.00 0.00 0.00 2.69
1395 1439 3.256383 TGTGCAATTTGAGGTCAAGATGG 59.744 43.478 0.00 0.00 37.15 3.51
1408 1452 3.881688 GTCAAGATGGATGGAGTTGGATG 59.118 47.826 0.00 0.00 0.00 3.51
1422 1466 3.766051 AGTTGGATGCATTTTCTTCCTCC 59.234 43.478 0.00 0.00 33.03 4.30
1423 1467 3.454719 TGGATGCATTTTCTTCCTCCA 57.545 42.857 0.00 0.00 33.03 3.86
1428 1506 4.380843 TGCATTTTCTTCCTCCACCTTA 57.619 40.909 0.00 0.00 0.00 2.69
1443 1521 2.236395 CACCTTAACTCCTTCGGATGGT 59.764 50.000 9.49 0.00 0.00 3.55
1460 1538 4.319766 GGATGGTAGCTTTATGTGATTGCG 60.320 45.833 0.00 0.00 0.00 4.85
1485 1566 7.341446 GGTGTGTTTTTCCAATTCAAAATACG 58.659 34.615 8.29 0.00 37.01 3.06
1487 1568 8.596380 GTGTGTTTTTCCAATTCAAAATACGAA 58.404 29.630 0.00 0.00 37.01 3.85
1548 1629 9.747898 ATAGTACTTTGTCATTAATTTCCCACA 57.252 29.630 0.00 0.00 0.00 4.17
1549 1630 7.882179 AGTACTTTGTCATTAATTTCCCACAC 58.118 34.615 0.00 0.00 0.00 3.82
1550 1631 6.096673 ACTTTGTCATTAATTTCCCACACC 57.903 37.500 0.00 0.00 0.00 4.16
1551 1632 4.775058 TTGTCATTAATTTCCCACACCG 57.225 40.909 0.00 0.00 0.00 4.94
1552 1633 4.022413 TGTCATTAATTTCCCACACCGA 57.978 40.909 0.00 0.00 0.00 4.69
1553 1634 4.006989 TGTCATTAATTTCCCACACCGAG 58.993 43.478 0.00 0.00 0.00 4.63
1554 1635 3.377172 GTCATTAATTTCCCACACCGAGG 59.623 47.826 0.00 0.00 0.00 4.63
1561 1642 4.394712 CCACACCGAGGGACAGGC 62.395 72.222 0.00 0.00 0.00 4.85
1562 1643 4.394712 CACACCGAGGGACAGGCC 62.395 72.222 0.00 0.00 0.00 5.19
1571 1652 3.721706 GGACAGGCCCAGGACAGG 61.722 72.222 0.00 0.00 0.00 4.00
1572 1653 2.607750 GACAGGCCCAGGACAGGA 60.608 66.667 0.00 0.00 0.00 3.86
1573 1654 2.121963 ACAGGCCCAGGACAGGAA 60.122 61.111 0.00 0.00 0.00 3.36
1574 1655 2.352805 CAGGCCCAGGACAGGAAC 59.647 66.667 0.00 0.00 0.00 3.62
1575 1656 3.322466 AGGCCCAGGACAGGAACG 61.322 66.667 0.00 0.00 0.00 3.95
1576 1657 3.319198 GGCCCAGGACAGGAACGA 61.319 66.667 0.00 0.00 0.00 3.85
1577 1658 2.266055 GCCCAGGACAGGAACGAG 59.734 66.667 0.00 0.00 0.00 4.18
1578 1659 2.266055 CCCAGGACAGGAACGAGC 59.734 66.667 0.00 0.00 0.00 5.03
1579 1660 2.125912 CCAGGACAGGAACGAGCG 60.126 66.667 0.00 0.00 0.00 5.03
1580 1661 2.125912 CAGGACAGGAACGAGCGG 60.126 66.667 0.00 0.00 0.00 5.52
1581 1662 2.282958 AGGACAGGAACGAGCGGA 60.283 61.111 0.00 0.00 0.00 5.54
1582 1663 1.906824 AGGACAGGAACGAGCGGAA 60.907 57.895 0.00 0.00 0.00 4.30
1583 1664 1.218316 GGACAGGAACGAGCGGAAT 59.782 57.895 0.00 0.00 0.00 3.01
1584 1665 0.806492 GGACAGGAACGAGCGGAATC 60.806 60.000 0.00 0.00 0.00 2.52
1585 1666 0.108804 GACAGGAACGAGCGGAATCA 60.109 55.000 0.00 0.00 0.00 2.57
1586 1667 0.320374 ACAGGAACGAGCGGAATCAA 59.680 50.000 0.00 0.00 0.00 2.57
1587 1668 1.066143 ACAGGAACGAGCGGAATCAAT 60.066 47.619 0.00 0.00 0.00 2.57
1588 1669 1.328680 CAGGAACGAGCGGAATCAATG 59.671 52.381 0.00 0.00 0.00 2.82
1589 1670 1.066143 AGGAACGAGCGGAATCAATGT 60.066 47.619 0.00 0.00 0.00 2.71
1590 1671 1.062587 GGAACGAGCGGAATCAATGTG 59.937 52.381 0.00 0.00 0.00 3.21
1591 1672 1.732259 GAACGAGCGGAATCAATGTGT 59.268 47.619 0.00 0.00 0.00 3.72
1592 1673 1.808411 ACGAGCGGAATCAATGTGTT 58.192 45.000 0.00 0.00 0.00 3.32
1593 1674 1.732259 ACGAGCGGAATCAATGTGTTC 59.268 47.619 0.00 0.00 0.00 3.18
1594 1675 2.002586 CGAGCGGAATCAATGTGTTCT 58.997 47.619 0.00 0.00 0.00 3.01
1595 1676 3.186909 CGAGCGGAATCAATGTGTTCTA 58.813 45.455 0.00 0.00 0.00 2.10
1596 1677 3.616821 CGAGCGGAATCAATGTGTTCTAA 59.383 43.478 0.00 0.00 0.00 2.10
1597 1678 4.271049 CGAGCGGAATCAATGTGTTCTAAT 59.729 41.667 0.00 0.00 0.00 1.73
1598 1679 5.220662 CGAGCGGAATCAATGTGTTCTAATT 60.221 40.000 0.00 0.00 0.00 1.40
1599 1680 6.515272 AGCGGAATCAATGTGTTCTAATTT 57.485 33.333 0.00 0.00 0.00 1.82
1600 1681 6.555315 AGCGGAATCAATGTGTTCTAATTTC 58.445 36.000 0.00 0.00 0.00 2.17
1601 1682 6.375455 AGCGGAATCAATGTGTTCTAATTTCT 59.625 34.615 0.00 0.00 0.00 2.52
1602 1683 6.470235 GCGGAATCAATGTGTTCTAATTTCTG 59.530 38.462 0.00 0.00 0.00 3.02
1603 1684 6.470235 CGGAATCAATGTGTTCTAATTTCTGC 59.530 38.462 0.00 0.00 0.00 4.26
1604 1685 6.753744 GGAATCAATGTGTTCTAATTTCTGCC 59.246 38.462 0.00 0.00 0.00 4.85
1605 1686 5.643379 TCAATGTGTTCTAATTTCTGCCC 57.357 39.130 0.00 0.00 0.00 5.36
1606 1687 5.324409 TCAATGTGTTCTAATTTCTGCCCT 58.676 37.500 0.00 0.00 0.00 5.19
1607 1688 5.774690 TCAATGTGTTCTAATTTCTGCCCTT 59.225 36.000 0.00 0.00 0.00 3.95
1608 1689 5.649782 ATGTGTTCTAATTTCTGCCCTTG 57.350 39.130 0.00 0.00 0.00 3.61
1609 1690 3.255642 TGTGTTCTAATTTCTGCCCTTGC 59.744 43.478 0.00 0.00 38.26 4.01
1611 1692 3.255642 TGTTCTAATTTCTGCCCTTGCAC 59.744 43.478 0.00 0.00 44.23 4.57
1612 1693 2.446435 TCTAATTTCTGCCCTTGCACC 58.554 47.619 0.00 0.00 44.23 5.01
1613 1694 1.133025 CTAATTTCTGCCCTTGCACCG 59.867 52.381 0.00 0.00 44.23 4.94
1614 1695 0.539438 AATTTCTGCCCTTGCACCGA 60.539 50.000 0.00 0.00 44.23 4.69
1615 1696 1.244019 ATTTCTGCCCTTGCACCGAC 61.244 55.000 0.00 0.00 44.23 4.79
1616 1697 3.842925 TTCTGCCCTTGCACCGACC 62.843 63.158 0.00 0.00 44.23 4.79
1617 1698 4.641645 CTGCCCTTGCACCGACCA 62.642 66.667 0.00 0.00 44.23 4.02
1618 1699 3.925630 CTGCCCTTGCACCGACCAT 62.926 63.158 0.00 0.00 44.23 3.55
1619 1700 3.134127 GCCCTTGCACCGACCATC 61.134 66.667 0.00 0.00 37.47 3.51
1620 1701 2.438434 CCCTTGCACCGACCATCC 60.438 66.667 0.00 0.00 0.00 3.51
1621 1702 2.350895 CCTTGCACCGACCATCCA 59.649 61.111 0.00 0.00 0.00 3.41
1622 1703 1.303236 CCTTGCACCGACCATCCAA 60.303 57.895 0.00 0.00 0.00 3.53
1623 1704 1.586154 CCTTGCACCGACCATCCAAC 61.586 60.000 0.00 0.00 0.00 3.77
1624 1705 1.911293 CTTGCACCGACCATCCAACG 61.911 60.000 0.00 0.00 0.00 4.10
1629 1710 2.660206 CGACCATCCAACGGACCA 59.340 61.111 0.00 0.00 32.98 4.02
1630 1711 1.220749 CGACCATCCAACGGACCAT 59.779 57.895 0.00 0.00 32.98 3.55
1631 1712 1.089481 CGACCATCCAACGGACCATG 61.089 60.000 0.00 0.00 32.98 3.66
1632 1713 0.748005 GACCATCCAACGGACCATGG 60.748 60.000 11.19 11.19 35.96 3.66
1638 1719 3.722908 TCCAACGGACCATGGATTAAA 57.277 42.857 21.47 0.00 40.74 1.52
1639 1720 3.349022 TCCAACGGACCATGGATTAAAC 58.651 45.455 21.47 2.23 40.74 2.01
1640 1721 2.096819 CCAACGGACCATGGATTAAACG 59.903 50.000 21.47 14.66 39.12 3.60
1641 1722 2.032680 ACGGACCATGGATTAAACGG 57.967 50.000 21.47 8.82 0.00 4.44
1642 1723 0.661020 CGGACCATGGATTAAACGGC 59.339 55.000 21.47 0.00 0.00 5.68
1643 1724 1.029681 GGACCATGGATTAAACGGCC 58.970 55.000 21.47 0.00 0.00 6.13
1644 1725 1.683629 GGACCATGGATTAAACGGCCA 60.684 52.381 21.47 0.00 35.91 5.36
1645 1726 1.404035 GACCATGGATTAAACGGCCAC 59.596 52.381 21.47 0.00 33.93 5.01
1646 1727 1.005450 ACCATGGATTAAACGGCCACT 59.995 47.619 21.47 0.00 33.93 4.00
1647 1728 1.405105 CCATGGATTAAACGGCCACTG 59.595 52.381 5.56 0.00 33.93 3.66
1648 1729 1.102978 ATGGATTAAACGGCCACTGC 58.897 50.000 2.24 0.00 33.93 4.40
1676 1757 2.609747 GACTATGCTATGTCCAGGGGA 58.390 52.381 0.00 0.00 0.00 4.81
1689 1770 3.393106 GGGGACCGCCGGTTCTAA 61.393 66.667 15.48 0.00 40.86 2.10
1690 1771 2.125391 GGGACCGCCGGTTCTAAC 60.125 66.667 15.48 0.00 35.25 2.34
1691 1772 2.125391 GGACCGCCGGTTCTAACC 60.125 66.667 11.54 1.91 45.76 2.85
1700 1781 3.950869 GGTTCTAACCGCCTTTCCT 57.049 52.632 0.00 0.00 39.66 3.36
1701 1782 2.195741 GGTTCTAACCGCCTTTCCTT 57.804 50.000 0.00 0.00 39.66 3.36
1702 1783 2.511659 GGTTCTAACCGCCTTTCCTTT 58.488 47.619 0.00 0.00 39.66 3.11
1703 1784 3.678289 GGTTCTAACCGCCTTTCCTTTA 58.322 45.455 0.00 0.00 39.66 1.85
1704 1785 4.074259 GGTTCTAACCGCCTTTCCTTTAA 58.926 43.478 0.00 0.00 39.66 1.52
1705 1786 4.155462 GGTTCTAACCGCCTTTCCTTTAAG 59.845 45.833 0.00 0.00 39.66 1.85
1706 1787 4.628963 TCTAACCGCCTTTCCTTTAAGT 57.371 40.909 0.00 0.00 0.00 2.24
1707 1788 4.976864 TCTAACCGCCTTTCCTTTAAGTT 58.023 39.130 0.00 0.00 0.00 2.66
1708 1789 5.379187 TCTAACCGCCTTTCCTTTAAGTTT 58.621 37.500 0.00 0.00 0.00 2.66
1709 1790 4.579454 AACCGCCTTTCCTTTAAGTTTC 57.421 40.909 0.00 0.00 0.00 2.78
1710 1791 3.558033 ACCGCCTTTCCTTTAAGTTTCA 58.442 40.909 0.00 0.00 0.00 2.69
1711 1792 3.568430 ACCGCCTTTCCTTTAAGTTTCAG 59.432 43.478 0.00 0.00 0.00 3.02
1712 1793 3.568430 CCGCCTTTCCTTTAAGTTTCAGT 59.432 43.478 0.00 0.00 0.00 3.41
1713 1794 4.758165 CCGCCTTTCCTTTAAGTTTCAGTA 59.242 41.667 0.00 0.00 0.00 2.74
1714 1795 5.414765 CCGCCTTTCCTTTAAGTTTCAGTAT 59.585 40.000 0.00 0.00 0.00 2.12
1715 1796 6.072119 CCGCCTTTCCTTTAAGTTTCAGTATT 60.072 38.462 0.00 0.00 0.00 1.89
1716 1797 7.368059 CGCCTTTCCTTTAAGTTTCAGTATTT 58.632 34.615 0.00 0.00 0.00 1.40
1717 1798 7.326063 CGCCTTTCCTTTAAGTTTCAGTATTTG 59.674 37.037 0.00 0.00 0.00 2.32
1718 1799 8.357402 GCCTTTCCTTTAAGTTTCAGTATTTGA 58.643 33.333 0.00 0.00 0.00 2.69
1771 1852 8.653036 TTAGTATAGAATAGGAGAAGAAGGGC 57.347 38.462 0.00 0.00 0.00 5.19
1772 1853 6.869930 AGTATAGAATAGGAGAAGAAGGGCT 58.130 40.000 0.00 0.00 0.00 5.19
1773 1854 7.309862 AGTATAGAATAGGAGAAGAAGGGCTT 58.690 38.462 0.00 0.00 40.25 4.35
1798 1879 3.426903 CCCCCAGTATTCCAGCATG 57.573 57.895 0.00 0.00 0.00 4.06
1799 1880 0.552848 CCCCCAGTATTCCAGCATGT 59.447 55.000 0.00 0.00 0.00 3.21
1800 1881 1.774254 CCCCCAGTATTCCAGCATGTA 59.226 52.381 0.00 0.00 0.00 2.29
1801 1882 2.224621 CCCCCAGTATTCCAGCATGTAG 60.225 54.545 0.00 0.00 0.00 2.74
1802 1883 2.498167 CCCAGTATTCCAGCATGTAGC 58.502 52.381 0.00 0.00 46.19 3.58
1815 1896 3.652274 GCATGTAGCTTTGAAAAAGGCA 58.348 40.909 0.00 0.00 41.15 4.75
1816 1897 4.057432 GCATGTAGCTTTGAAAAAGGCAA 58.943 39.130 0.00 0.00 41.15 4.52
1817 1898 4.151157 GCATGTAGCTTTGAAAAAGGCAAG 59.849 41.667 0.00 0.00 41.15 4.01
1818 1899 4.320608 TGTAGCTTTGAAAAAGGCAAGG 57.679 40.909 0.00 0.00 0.00 3.61
1819 1900 3.704061 TGTAGCTTTGAAAAAGGCAAGGT 59.296 39.130 0.00 0.00 0.00 3.50
1820 1901 3.183793 AGCTTTGAAAAAGGCAAGGTG 57.816 42.857 2.19 0.00 0.00 4.00
1821 1902 2.501316 AGCTTTGAAAAAGGCAAGGTGT 59.499 40.909 2.19 0.00 0.00 4.16
1822 1903 3.055167 AGCTTTGAAAAAGGCAAGGTGTT 60.055 39.130 2.19 0.00 0.00 3.32
1823 1904 3.063861 GCTTTGAAAAAGGCAAGGTGTTG 59.936 43.478 2.19 0.00 36.67 3.33
1824 1905 3.971245 TTGAAAAAGGCAAGGTGTTGT 57.029 38.095 0.00 0.00 35.92 3.32
1825 1906 3.971245 TGAAAAAGGCAAGGTGTTGTT 57.029 38.095 0.00 0.00 35.92 2.83
1826 1907 3.855858 TGAAAAAGGCAAGGTGTTGTTC 58.144 40.909 0.00 0.00 35.92 3.18
1827 1908 3.259374 TGAAAAAGGCAAGGTGTTGTTCA 59.741 39.130 0.00 0.00 35.92 3.18
1828 1909 3.971245 AAAAGGCAAGGTGTTGTTCAA 57.029 38.095 0.00 0.00 35.92 2.69
1829 1910 3.525268 AAAGGCAAGGTGTTGTTCAAG 57.475 42.857 0.00 0.00 35.92 3.02
1830 1911 1.402787 AGGCAAGGTGTTGTTCAAGG 58.597 50.000 0.00 0.00 35.92 3.61
1831 1912 1.111277 GGCAAGGTGTTGTTCAAGGT 58.889 50.000 0.00 0.00 35.92 3.50
1832 1913 1.480545 GGCAAGGTGTTGTTCAAGGTT 59.519 47.619 0.00 0.00 35.92 3.50
1833 1914 2.093711 GGCAAGGTGTTGTTCAAGGTTT 60.094 45.455 0.00 0.00 35.92 3.27
1834 1915 3.186909 GCAAGGTGTTGTTCAAGGTTTC 58.813 45.455 0.00 0.00 35.92 2.78
1835 1916 3.780902 CAAGGTGTTGTTCAAGGTTTCC 58.219 45.455 0.00 0.00 0.00 3.13
1836 1917 3.382083 AGGTGTTGTTCAAGGTTTCCT 57.618 42.857 0.00 0.00 33.87 3.36
1837 1918 4.513406 AGGTGTTGTTCAAGGTTTCCTA 57.487 40.909 0.00 0.00 31.13 2.94
1838 1919 5.061721 AGGTGTTGTTCAAGGTTTCCTAT 57.938 39.130 0.00 0.00 31.13 2.57
1839 1920 5.070685 AGGTGTTGTTCAAGGTTTCCTATC 58.929 41.667 0.00 0.00 31.13 2.08
1840 1921 4.217767 GGTGTTGTTCAAGGTTTCCTATCC 59.782 45.833 0.00 0.00 31.13 2.59
1841 1922 4.217767 GTGTTGTTCAAGGTTTCCTATCCC 59.782 45.833 0.00 0.00 31.13 3.85
1842 1923 4.141135 TGTTGTTCAAGGTTTCCTATCCCA 60.141 41.667 0.00 0.00 31.13 4.37
1843 1924 4.946160 TGTTCAAGGTTTCCTATCCCAT 57.054 40.909 0.00 0.00 31.13 4.00
1844 1925 5.269554 TGTTCAAGGTTTCCTATCCCATT 57.730 39.130 0.00 0.00 31.13 3.16
1845 1926 5.261216 TGTTCAAGGTTTCCTATCCCATTC 58.739 41.667 0.00 0.00 31.13 2.67
1846 1927 5.222233 TGTTCAAGGTTTCCTATCCCATTCA 60.222 40.000 0.00 0.00 31.13 2.57
1847 1928 5.528600 TCAAGGTTTCCTATCCCATTCAA 57.471 39.130 0.00 0.00 31.13 2.69
1848 1929 5.261216 TCAAGGTTTCCTATCCCATTCAAC 58.739 41.667 0.00 0.00 31.13 3.18
1849 1930 4.946160 AGGTTTCCTATCCCATTCAACA 57.054 40.909 0.00 0.00 28.47 3.33
1850 1931 5.472301 AGGTTTCCTATCCCATTCAACAT 57.528 39.130 0.00 0.00 28.47 2.71
1851 1932 5.842339 AGGTTTCCTATCCCATTCAACATT 58.158 37.500 0.00 0.00 28.47 2.71
1852 1933 6.263754 AGGTTTCCTATCCCATTCAACATTT 58.736 36.000 0.00 0.00 28.47 2.32
1853 1934 6.730507 AGGTTTCCTATCCCATTCAACATTTT 59.269 34.615 0.00 0.00 28.47 1.82
1854 1935 7.898636 AGGTTTCCTATCCCATTCAACATTTTA 59.101 33.333 0.00 0.00 28.47 1.52
1855 1936 7.979537 GGTTTCCTATCCCATTCAACATTTTAC 59.020 37.037 0.00 0.00 0.00 2.01
1856 1937 8.527810 GTTTCCTATCCCATTCAACATTTTACA 58.472 33.333 0.00 0.00 0.00 2.41
1857 1938 8.837099 TTCCTATCCCATTCAACATTTTACAT 57.163 30.769 0.00 0.00 0.00 2.29
1858 1939 8.837099 TCCTATCCCATTCAACATTTTACATT 57.163 30.769 0.00 0.00 0.00 2.71
1859 1940 9.265862 TCCTATCCCATTCAACATTTTACATTT 57.734 29.630 0.00 0.00 0.00 2.32
1860 1941 9.889128 CCTATCCCATTCAACATTTTACATTTT 57.111 29.630 0.00 0.00 0.00 1.82
1862 1943 7.976135 TCCCATTCAACATTTTACATTTTGG 57.024 32.000 0.00 0.00 0.00 3.28
1863 1944 6.429385 TCCCATTCAACATTTTACATTTTGGC 59.571 34.615 0.00 0.00 0.00 4.52
1864 1945 6.305639 CCATTCAACATTTTACATTTTGGCG 58.694 36.000 0.00 0.00 0.00 5.69
1865 1946 4.981389 TCAACATTTTACATTTTGGCGC 57.019 36.364 0.00 0.00 0.00 6.53
1866 1947 4.371786 TCAACATTTTACATTTTGGCGCA 58.628 34.783 10.83 0.00 0.00 6.09
1867 1948 4.811024 TCAACATTTTACATTTTGGCGCAA 59.189 33.333 10.83 0.00 0.00 4.85
1868 1949 5.468072 TCAACATTTTACATTTTGGCGCAAT 59.532 32.000 10.83 0.00 0.00 3.56
1869 1950 6.646653 TCAACATTTTACATTTTGGCGCAATA 59.353 30.769 10.83 0.00 0.00 1.90
1870 1951 7.332926 TCAACATTTTACATTTTGGCGCAATAT 59.667 29.630 10.83 0.00 0.00 1.28
1871 1952 8.598924 CAACATTTTACATTTTGGCGCAATATA 58.401 29.630 10.83 0.00 0.00 0.86
1872 1953 8.885494 ACATTTTACATTTTGGCGCAATATAT 57.115 26.923 10.83 0.00 0.00 0.86
1873 1954 9.323985 ACATTTTACATTTTGGCGCAATATATT 57.676 25.926 10.83 0.00 0.00 1.28
1880 1961 8.413229 ACATTTTGGCGCAATATATTATATCCC 58.587 33.333 10.83 0.00 0.00 3.85
1881 1962 8.632679 CATTTTGGCGCAATATATTATATCCCT 58.367 33.333 10.83 0.00 0.00 4.20
1882 1963 8.588290 TTTTGGCGCAATATATTATATCCCTT 57.412 30.769 10.83 0.00 0.00 3.95
1883 1964 7.801716 TTGGCGCAATATATTATATCCCTTC 57.198 36.000 10.83 0.00 0.00 3.46
1884 1965 6.296026 TGGCGCAATATATTATATCCCTTCC 58.704 40.000 10.83 0.00 0.00 3.46
1885 1966 6.101150 TGGCGCAATATATTATATCCCTTCCT 59.899 38.462 10.83 0.00 0.00 3.36
1886 1967 6.998673 GGCGCAATATATTATATCCCTTCCTT 59.001 38.462 10.83 0.00 0.00 3.36
1887 1968 7.041098 GGCGCAATATATTATATCCCTTCCTTG 60.041 40.741 10.83 0.00 0.00 3.61
1888 1969 7.041098 GCGCAATATATTATATCCCTTCCTTGG 60.041 40.741 0.30 0.00 0.00 3.61
1893 1974 7.766736 ATATTATATCCCTTCCTTGGGGTAC 57.233 40.000 0.00 0.00 44.89 3.34
1894 1975 2.335933 ATATCCCTTCCTTGGGGTACG 58.664 52.381 0.00 0.00 44.89 3.67
1895 1976 2.995547 CCCTTCCTTGGGGTACGG 59.004 66.667 0.00 0.00 43.45 4.02
1896 1977 1.921857 CCCTTCCTTGGGGTACGGT 60.922 63.158 0.00 0.00 43.45 4.83
1897 1978 0.618393 CCCTTCCTTGGGGTACGGTA 60.618 60.000 0.00 0.00 43.45 4.02
1898 1979 0.538584 CCTTCCTTGGGGTACGGTAC 59.461 60.000 9.82 9.82 0.00 3.34
1916 1997 7.038154 ACGGTACCATATCAAATTCATTTGG 57.962 36.000 13.54 5.68 45.39 3.28
1917 1998 6.040391 ACGGTACCATATCAAATTCATTTGGG 59.960 38.462 13.54 7.74 45.39 4.12
1918 1999 6.223120 GGTACCATATCAAATTCATTTGGGC 58.777 40.000 7.15 4.66 45.39 5.36
1919 2000 5.954153 ACCATATCAAATTCATTTGGGCA 57.046 34.783 11.49 0.00 45.39 5.36
1920 2001 6.310764 ACCATATCAAATTCATTTGGGCAA 57.689 33.333 11.49 0.00 45.39 4.52
1921 2002 6.114767 ACCATATCAAATTCATTTGGGCAAC 58.885 36.000 11.49 0.00 45.39 4.17
1922 2003 5.234757 CCATATCAAATTCATTTGGGCAACG 59.765 40.000 11.49 0.00 45.39 4.10
1923 2004 3.037431 TCAAATTCATTTGGGCAACGG 57.963 42.857 11.49 0.00 45.39 4.44
1924 2005 2.075338 CAAATTCATTTGGGCAACGGG 58.925 47.619 4.57 0.00 42.51 5.28
1925 2006 1.638529 AATTCATTTGGGCAACGGGA 58.361 45.000 0.00 0.00 37.60 5.14
1926 2007 1.864669 ATTCATTTGGGCAACGGGAT 58.135 45.000 0.00 0.00 37.60 3.85
1927 2008 2.516227 TTCATTTGGGCAACGGGATA 57.484 45.000 0.00 0.00 37.60 2.59
1928 2009 2.516227 TCATTTGGGCAACGGGATAA 57.484 45.000 0.00 0.00 37.60 1.75
1929 2010 3.025322 TCATTTGGGCAACGGGATAAT 57.975 42.857 0.00 0.00 37.60 1.28
1930 2011 4.171878 TCATTTGGGCAACGGGATAATA 57.828 40.909 0.00 0.00 37.60 0.98
1931 2012 4.537751 TCATTTGGGCAACGGGATAATAA 58.462 39.130 0.00 0.00 37.60 1.40
1932 2013 4.956700 TCATTTGGGCAACGGGATAATAAA 59.043 37.500 0.00 0.00 37.60 1.40
1933 2014 4.993029 TTTGGGCAACGGGATAATAAAG 57.007 40.909 0.00 0.00 37.60 1.85
1934 2015 2.303175 TGGGCAACGGGATAATAAAGC 58.697 47.619 0.00 0.00 37.60 3.51
1935 2016 1.265905 GGGCAACGGGATAATAAAGCG 59.734 52.381 0.00 0.00 37.60 4.68
1936 2017 2.215196 GGCAACGGGATAATAAAGCGA 58.785 47.619 0.00 0.00 0.00 4.93
1937 2018 2.614983 GGCAACGGGATAATAAAGCGAA 59.385 45.455 0.00 0.00 0.00 4.70
1938 2019 3.547413 GGCAACGGGATAATAAAGCGAAC 60.547 47.826 0.00 0.00 0.00 3.95
1939 2020 3.064271 GCAACGGGATAATAAAGCGAACA 59.936 43.478 0.00 0.00 0.00 3.18
1940 2021 4.437659 GCAACGGGATAATAAAGCGAACAA 60.438 41.667 0.00 0.00 0.00 2.83
1941 2022 5.632959 CAACGGGATAATAAAGCGAACAAA 58.367 37.500 0.00 0.00 0.00 2.83
1942 2023 5.479716 ACGGGATAATAAAGCGAACAAAG 57.520 39.130 0.00 0.00 0.00 2.77
1943 2024 5.180271 ACGGGATAATAAAGCGAACAAAGA 58.820 37.500 0.00 0.00 0.00 2.52
1944 2025 5.064325 ACGGGATAATAAAGCGAACAAAGAC 59.936 40.000 0.00 0.00 0.00 3.01
1945 2026 5.503520 CGGGATAATAAAGCGAACAAAGACC 60.504 44.000 0.00 0.00 0.00 3.85
1946 2027 5.355910 GGGATAATAAAGCGAACAAAGACCA 59.644 40.000 0.00 0.00 0.00 4.02
1947 2028 6.039382 GGGATAATAAAGCGAACAAAGACCAT 59.961 38.462 0.00 0.00 0.00 3.55
1948 2029 7.227910 GGGATAATAAAGCGAACAAAGACCATA 59.772 37.037 0.00 0.00 0.00 2.74
1949 2030 8.617809 GGATAATAAAGCGAACAAAGACCATAA 58.382 33.333 0.00 0.00 0.00 1.90
1950 2031 9.997482 GATAATAAAGCGAACAAAGACCATAAA 57.003 29.630 0.00 0.00 0.00 1.40
1953 2034 8.742554 ATAAAGCGAACAAAGACCATAAAAAG 57.257 30.769 0.00 0.00 0.00 2.27
1954 2035 6.385649 AAGCGAACAAAGACCATAAAAAGA 57.614 33.333 0.00 0.00 0.00 2.52
1955 2036 6.002062 AGCGAACAAAGACCATAAAAAGAG 57.998 37.500 0.00 0.00 0.00 2.85
1956 2037 5.763204 AGCGAACAAAGACCATAAAAAGAGA 59.237 36.000 0.00 0.00 0.00 3.10
1957 2038 6.431234 AGCGAACAAAGACCATAAAAAGAGAT 59.569 34.615 0.00 0.00 0.00 2.75
1958 2039 7.040409 AGCGAACAAAGACCATAAAAAGAGATT 60.040 33.333 0.00 0.00 0.00 2.40
1959 2040 8.234546 GCGAACAAAGACCATAAAAAGAGATTA 58.765 33.333 0.00 0.00 0.00 1.75
1960 2041 9.543018 CGAACAAAGACCATAAAAAGAGATTAC 57.457 33.333 0.00 0.00 0.00 1.89
1967 2048 9.178758 AGACCATAAAAAGAGATTACAACATCC 57.821 33.333 0.00 0.00 0.00 3.51
1968 2049 8.877864 ACCATAAAAAGAGATTACAACATCCA 57.122 30.769 0.00 0.00 0.00 3.41
1969 2050 8.960591 ACCATAAAAAGAGATTACAACATCCAG 58.039 33.333 0.00 0.00 0.00 3.86
1970 2051 9.177608 CCATAAAAAGAGATTACAACATCCAGA 57.822 33.333 0.00 0.00 0.00 3.86
1973 2054 8.463930 AAAAAGAGATTACAACATCCAGAACA 57.536 30.769 0.00 0.00 0.00 3.18
1974 2055 8.463930 AAAAGAGATTACAACATCCAGAACAA 57.536 30.769 0.00 0.00 0.00 2.83
1975 2056 8.463930 AAAGAGATTACAACATCCAGAACAAA 57.536 30.769 0.00 0.00 0.00 2.83
1976 2057 7.678947 AGAGATTACAACATCCAGAACAAAG 57.321 36.000 0.00 0.00 0.00 2.77
1977 2058 6.150140 AGAGATTACAACATCCAGAACAAAGC 59.850 38.462 0.00 0.00 0.00 3.51
1978 2059 4.846779 TTACAACATCCAGAACAAAGCC 57.153 40.909 0.00 0.00 0.00 4.35
1979 2060 2.949447 ACAACATCCAGAACAAAGCCT 58.051 42.857 0.00 0.00 0.00 4.58
1980 2061 4.098914 ACAACATCCAGAACAAAGCCTA 57.901 40.909 0.00 0.00 0.00 3.93
1981 2062 4.666512 ACAACATCCAGAACAAAGCCTAT 58.333 39.130 0.00 0.00 0.00 2.57
1982 2063 4.702131 ACAACATCCAGAACAAAGCCTATC 59.298 41.667 0.00 0.00 0.00 2.08
1983 2064 4.574674 ACATCCAGAACAAAGCCTATCA 57.425 40.909 0.00 0.00 0.00 2.15
1984 2065 4.922206 ACATCCAGAACAAAGCCTATCAA 58.078 39.130 0.00 0.00 0.00 2.57
1985 2066 4.946157 ACATCCAGAACAAAGCCTATCAAG 59.054 41.667 0.00 0.00 0.00 3.02
1986 2067 3.347216 TCCAGAACAAAGCCTATCAAGC 58.653 45.455 0.00 0.00 0.00 4.01
1987 2068 2.424956 CCAGAACAAAGCCTATCAAGCC 59.575 50.000 0.00 0.00 0.00 4.35
1988 2069 3.084039 CAGAACAAAGCCTATCAAGCCA 58.916 45.455 0.00 0.00 0.00 4.75
1989 2070 3.507233 CAGAACAAAGCCTATCAAGCCAA 59.493 43.478 0.00 0.00 0.00 4.52
1990 2071 3.507622 AGAACAAAGCCTATCAAGCCAAC 59.492 43.478 0.00 0.00 0.00 3.77
1991 2072 2.171003 ACAAAGCCTATCAAGCCAACC 58.829 47.619 0.00 0.00 0.00 3.77
1992 2073 2.225117 ACAAAGCCTATCAAGCCAACCT 60.225 45.455 0.00 0.00 0.00 3.50
1993 2074 2.827921 CAAAGCCTATCAAGCCAACCTT 59.172 45.455 0.00 0.00 0.00 3.50
1994 2075 2.426842 AGCCTATCAAGCCAACCTTC 57.573 50.000 0.00 0.00 0.00 3.46
1995 2076 1.064389 AGCCTATCAAGCCAACCTTCC 60.064 52.381 0.00 0.00 0.00 3.46
1996 2077 2.024306 GCCTATCAAGCCAACCTTCCC 61.024 57.143 0.00 0.00 0.00 3.97
1997 2078 1.566231 CCTATCAAGCCAACCTTCCCT 59.434 52.381 0.00 0.00 0.00 4.20
1998 2079 2.422093 CCTATCAAGCCAACCTTCCCTC 60.422 54.545 0.00 0.00 0.00 4.30
1999 2080 1.075601 ATCAAGCCAACCTTCCCTCA 58.924 50.000 0.00 0.00 0.00 3.86
2000 2081 0.110486 TCAAGCCAACCTTCCCTCAC 59.890 55.000 0.00 0.00 0.00 3.51
2001 2082 0.111253 CAAGCCAACCTTCCCTCACT 59.889 55.000 0.00 0.00 0.00 3.41
2002 2083 0.111253 AAGCCAACCTTCCCTCACTG 59.889 55.000 0.00 0.00 0.00 3.66
2003 2084 1.973812 GCCAACCTTCCCTCACTGC 60.974 63.158 0.00 0.00 0.00 4.40
2004 2085 1.672356 CCAACCTTCCCTCACTGCG 60.672 63.158 0.00 0.00 0.00 5.18
2011 2092 3.052082 CCCTCACTGCGGTGCAAG 61.052 66.667 21.33 13.64 42.72 4.01
2018 2099 3.620300 CTGCGGTGCAAGCATGGTG 62.620 63.158 16.95 3.78 44.26 4.17
2048 2129 6.179756 TGCAAAGGTAATTTAGATGCAGAGA 58.820 36.000 0.00 0.00 0.00 3.10
2064 2145 5.756918 TGCAGAGACTAGTGTTATAGACCT 58.243 41.667 0.00 0.00 0.00 3.85
2085 2166 5.670149 CTGCTATTTTAGATGCAGTCAGG 57.330 43.478 0.00 0.00 45.31 3.86
2086 2167 5.102953 TGCTATTTTAGATGCAGTCAGGT 57.897 39.130 0.00 0.00 0.00 4.00
2087 2168 5.118990 TGCTATTTTAGATGCAGTCAGGTC 58.881 41.667 0.00 0.00 0.00 3.85
2088 2169 5.118990 GCTATTTTAGATGCAGTCAGGTCA 58.881 41.667 0.00 0.00 0.00 4.02
2089 2170 5.586243 GCTATTTTAGATGCAGTCAGGTCAA 59.414 40.000 0.00 0.00 0.00 3.18
2090 2171 6.094048 GCTATTTTAGATGCAGTCAGGTCAAA 59.906 38.462 0.00 0.00 0.00 2.69
2092 2173 2.191128 AGATGCAGTCAGGTCAAACC 57.809 50.000 0.00 0.00 38.99 3.27
2130 2216 6.097839 AGCATAATACGAAAAGGACTCCTACA 59.902 38.462 0.00 0.00 31.13 2.74
2138 2224 8.713737 ACGAAAAGGACTCCTACATTTTATAC 57.286 34.615 0.00 0.00 32.77 1.47
2141 2227 8.803397 AAAAGGACTCCTACATTTTATACCAC 57.197 34.615 0.00 0.00 31.27 4.16
2145 2231 6.126854 GGACTCCTACATTTTATACCACAGGT 60.127 42.308 0.00 0.00 40.16 4.00
2154 2240 9.662947 ACATTTTATACCACAGGTAGTAGTTTC 57.337 33.333 2.07 0.00 41.83 2.78
2164 2253 7.342942 CACAGGTAGTAGTTTCTTTTTCGTTC 58.657 38.462 0.00 0.00 0.00 3.95
2169 2258 4.748600 AGTAGTTTCTTTTTCGTTCGAGGG 59.251 41.667 0.00 0.00 0.00 4.30
2170 2259 3.800531 AGTTTCTTTTTCGTTCGAGGGA 58.199 40.909 0.00 0.00 0.00 4.20
2171 2260 3.558829 AGTTTCTTTTTCGTTCGAGGGAC 59.441 43.478 0.00 0.00 0.00 4.46
2172 2261 1.774639 TCTTTTTCGTTCGAGGGACG 58.225 50.000 1.73 1.73 41.62 4.79
2185 2274 5.169992 TCGAGGGACGATAGGATGTAATA 57.830 43.478 0.00 0.00 46.45 0.98
2186 2275 5.563592 TCGAGGGACGATAGGATGTAATAA 58.436 41.667 0.00 0.00 46.45 1.40
2191 2280 9.152595 GAGGGACGATAGGATGTAATAATTTTC 57.847 37.037 0.00 0.00 43.77 2.29
2259 2348 8.480133 AGTACAAAACACCCCAAACATAATAA 57.520 30.769 0.00 0.00 0.00 1.40
2261 2350 9.713713 GTACAAAACACCCCAAACATAATAAAT 57.286 29.630 0.00 0.00 0.00 1.40
2285 2374 2.699954 ACATCGAGGTCAATGGACAAC 58.300 47.619 1.86 0.00 46.17 3.32
2298 2387 0.108520 GGACAACCGAGCGACCATTA 60.109 55.000 0.00 0.00 0.00 1.90
2313 2402 3.009192 ATTACCGCCGCCAGAACGA 62.009 57.895 0.00 0.00 34.06 3.85
2320 2409 4.680237 CGCCAGAACGAGCCACCA 62.680 66.667 0.00 0.00 34.06 4.17
2321 2410 2.743928 GCCAGAACGAGCCACCAG 60.744 66.667 0.00 0.00 0.00 4.00
2344 2433 4.473520 CGCTGTCGCCCCTTCCAT 62.474 66.667 0.00 0.00 0.00 3.41
2346 2435 1.523938 GCTGTCGCCCCTTCCATAC 60.524 63.158 0.00 0.00 0.00 2.39
2347 2436 1.227263 CTGTCGCCCCTTCCATACG 60.227 63.158 0.00 0.00 0.00 3.06
2350 2439 2.131709 TCGCCCCTTCCATACGGAG 61.132 63.158 0.00 0.00 44.10 4.63
2360 2449 2.578786 TCCATACGGAGCTTGTCGATA 58.421 47.619 11.08 0.00 35.91 2.92
2364 2453 2.736144 ACGGAGCTTGTCGATAACAA 57.264 45.000 11.08 0.00 45.60 2.83
2367 2456 1.659098 GGAGCTTGTCGATAACAACCG 59.341 52.381 0.00 0.00 42.95 4.44
2368 2457 2.602878 GAGCTTGTCGATAACAACCGA 58.397 47.619 0.00 0.00 42.95 4.69
2374 2463 5.107375 GCTTGTCGATAACAACCGAAAAGTA 60.107 40.000 13.86 0.00 46.34 2.24
2381 2470 6.183360 CGATAACAACCGAAAAGTATTCGTGA 60.183 38.462 9.41 0.00 40.04 4.35
2382 2471 4.720530 ACAACCGAAAAGTATTCGTGAC 57.279 40.909 9.41 0.00 40.04 3.67
2383 2472 4.121317 ACAACCGAAAAGTATTCGTGACA 58.879 39.130 9.41 0.00 40.04 3.58
2384 2473 4.753107 ACAACCGAAAAGTATTCGTGACAT 59.247 37.500 9.41 0.00 40.04 3.06
2388 2478 3.485216 CGAAAAGTATTCGTGACATGCCC 60.485 47.826 2.62 0.00 37.18 5.36
2396 2486 0.462047 CGTGACATGCCCCTAAGGAC 60.462 60.000 0.00 0.00 38.24 3.85
2416 2506 2.058595 AGCGTTCGGGAGCCATAGT 61.059 57.895 0.00 0.00 0.00 2.12
2420 2510 0.248949 GTTCGGGAGCCATAGTCGTC 60.249 60.000 0.00 0.00 0.00 4.20
2423 2513 2.027751 GGAGCCATAGTCGTCGCC 59.972 66.667 0.00 0.00 0.00 5.54
2435 2525 1.737793 GTCGTCGCCATTGAATCCTTT 59.262 47.619 0.00 0.00 0.00 3.11
2440 2530 4.035091 CGTCGCCATTGAATCCTTTAATCA 59.965 41.667 0.00 0.00 0.00 2.57
2501 2591 3.856267 GCACGACGAGAAACTCTAACCTT 60.856 47.826 0.00 0.00 0.00 3.50
2504 2594 2.994578 GACGAGAAACTCTAACCTTGCC 59.005 50.000 0.00 0.00 0.00 4.52
2506 2596 1.732809 GAGAAACTCTAACCTTGCCGC 59.267 52.381 0.00 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
204 208 5.192176 GGTTACCGGGGTATATTTTCAACA 58.808 41.667 6.32 0.00 0.00 3.33
361 368 3.405170 CTAAGTTTAGCATGGGCAACG 57.595 47.619 0.00 0.00 44.61 4.10
451 459 5.242434 TCATGGTAACTTCAACATAACGCT 58.758 37.500 0.00 0.00 37.61 5.07
532 543 9.793259 CCCTTATTCTTTCTACCATATTAGCAA 57.207 33.333 0.00 0.00 0.00 3.91
533 544 8.945193 ACCCTTATTCTTTCTACCATATTAGCA 58.055 33.333 0.00 0.00 0.00 3.49
742 758 7.938140 TTCTTTCCACCGATTTTTATCTCAT 57.062 32.000 0.00 0.00 0.00 2.90
780 797 1.074244 TCCTCCCGTTTCCCGATTTTT 59.926 47.619 0.00 0.00 39.56 1.94
810 828 1.585006 CTAACGACCCACTGCGTCT 59.415 57.895 0.00 0.00 40.23 4.18
822 840 2.605837 TTGTTGGACTGTGCTAACGA 57.394 45.000 0.00 1.37 32.61 3.85
825 843 6.176896 TGCTATATTTGTTGGACTGTGCTAA 58.823 36.000 0.00 0.00 0.00 3.09
826 844 5.739959 TGCTATATTTGTTGGACTGTGCTA 58.260 37.500 0.00 0.00 0.00 3.49
827 845 4.588899 TGCTATATTTGTTGGACTGTGCT 58.411 39.130 0.00 0.00 0.00 4.40
828 846 4.963276 TGCTATATTTGTTGGACTGTGC 57.037 40.909 0.00 0.00 0.00 4.57
829 847 7.984391 TGTTATGCTATATTTGTTGGACTGTG 58.016 34.615 0.00 0.00 0.00 3.66
830 848 8.574251 TTGTTATGCTATATTTGTTGGACTGT 57.426 30.769 0.00 0.00 0.00 3.55
831 849 9.853555 TTTTGTTATGCTATATTTGTTGGACTG 57.146 29.630 0.00 0.00 0.00 3.51
832 850 9.855021 GTTTTGTTATGCTATATTTGTTGGACT 57.145 29.630 0.00 0.00 0.00 3.85
833 851 9.855021 AGTTTTGTTATGCTATATTTGTTGGAC 57.145 29.630 0.00 0.00 0.00 4.02
834 852 9.853555 CAGTTTTGTTATGCTATATTTGTTGGA 57.146 29.630 0.00 0.00 0.00 3.53
835 853 9.638239 ACAGTTTTGTTATGCTATATTTGTTGG 57.362 29.630 0.00 0.00 32.28 3.77
880 898 2.607750 GTCCACAGCCAGGAGGGA 60.608 66.667 0.00 0.00 40.01 4.20
909 927 2.164624 AGATCTGTTGACTAGTCGCACC 59.835 50.000 17.85 6.23 0.00 5.01
912 930 2.600867 GCAAGATCTGTTGACTAGTCGC 59.399 50.000 17.85 13.28 0.00 5.19
914 932 3.182967 CGGCAAGATCTGTTGACTAGTC 58.817 50.000 16.32 16.32 32.74 2.59
955 973 3.943381 CTGCTGTGCTCATGGATCTTTAA 59.057 43.478 0.00 0.00 0.00 1.52
982 1000 2.358615 TCGATGCTGTGGGTGTGC 60.359 61.111 0.00 0.00 0.00 4.57
1008 1027 0.465460 TTGGTGTGTGGTTGCTCTCC 60.465 55.000 0.00 0.00 0.00 3.71
1056 1080 4.533707 TCTCATCTTGTGATCTCCAAGGTT 59.466 41.667 19.16 9.47 39.78 3.50
1127 1154 1.663379 CCGTGACGTCCATGAGGCTA 61.663 60.000 14.12 0.00 33.60 3.93
1296 1326 1.250328 CCAGGTGCTTGCTGATTCAA 58.750 50.000 0.00 0.00 0.00 2.69
1299 1329 2.338015 CGCCAGGTGCTTGCTGATT 61.338 57.895 0.00 0.00 38.05 2.57
1306 1336 0.957395 CACAGAATCGCCAGGTGCTT 60.957 55.000 0.00 0.00 38.05 3.91
1314 1344 1.802960 CAGCCATATCACAGAATCGCC 59.197 52.381 0.00 0.00 0.00 5.54
1337 1367 2.735772 GCTGGGCTGCTAGGTGCTA 61.736 63.158 0.00 0.00 43.37 3.49
1338 1368 4.106925 GCTGGGCTGCTAGGTGCT 62.107 66.667 0.00 0.00 43.37 4.40
1339 1369 2.329539 TATGCTGGGCTGCTAGGTGC 62.330 60.000 0.00 0.00 43.25 5.01
1340 1370 0.399454 ATATGCTGGGCTGCTAGGTG 59.601 55.000 0.00 0.00 0.00 4.00
1341 1371 0.399454 CATATGCTGGGCTGCTAGGT 59.601 55.000 0.00 0.00 0.00 3.08
1342 1372 0.399454 ACATATGCTGGGCTGCTAGG 59.601 55.000 1.58 0.00 0.00 3.02
1343 1373 1.071228 TCACATATGCTGGGCTGCTAG 59.929 52.381 1.58 0.00 0.00 3.42
1369 1399 1.955778 TGACCTCAAATTGCACACCAG 59.044 47.619 0.00 0.00 0.00 4.00
1384 1414 2.240667 CCAACTCCATCCATCTTGACCT 59.759 50.000 0.00 0.00 0.00 3.85
1395 1439 4.996788 AGAAAATGCATCCAACTCCATC 57.003 40.909 0.00 0.00 0.00 3.51
1408 1452 4.767409 AGTTAAGGTGGAGGAAGAAAATGC 59.233 41.667 0.00 0.00 0.00 3.56
1443 1521 3.373748 CACACCGCAATCACATAAAGCTA 59.626 43.478 0.00 0.00 0.00 3.32
1460 1538 7.222999 TCGTATTTTGAATTGGAAAAACACACC 59.777 33.333 0.00 0.00 0.00 4.16
1545 1626 4.394712 GGCCTGTCCCTCGGTGTG 62.395 72.222 0.00 0.00 0.00 3.82
1554 1635 3.721706 CCTGTCCTGGGCCTGTCC 61.722 72.222 4.53 0.00 0.00 4.02
1555 1636 2.224159 TTCCTGTCCTGGGCCTGTC 61.224 63.158 4.53 0.36 0.00 3.51
1556 1637 2.121963 TTCCTGTCCTGGGCCTGT 60.122 61.111 4.53 0.00 0.00 4.00
1557 1638 2.352805 GTTCCTGTCCTGGGCCTG 59.647 66.667 4.53 3.68 0.00 4.85
1558 1639 3.322466 CGTTCCTGTCCTGGGCCT 61.322 66.667 4.53 0.00 0.00 5.19
1559 1640 3.316573 CTCGTTCCTGTCCTGGGCC 62.317 68.421 0.00 0.00 0.00 5.80
1560 1641 2.266055 CTCGTTCCTGTCCTGGGC 59.734 66.667 0.00 0.00 0.00 5.36
1561 1642 2.266055 GCTCGTTCCTGTCCTGGG 59.734 66.667 0.00 0.00 0.00 4.45
1562 1643 2.125912 CGCTCGTTCCTGTCCTGG 60.126 66.667 0.00 0.00 0.00 4.45
1563 1644 2.125912 CCGCTCGTTCCTGTCCTG 60.126 66.667 0.00 0.00 0.00 3.86
1564 1645 1.258445 ATTCCGCTCGTTCCTGTCCT 61.258 55.000 0.00 0.00 0.00 3.85
1565 1646 0.806492 GATTCCGCTCGTTCCTGTCC 60.806 60.000 0.00 0.00 0.00 4.02
1566 1647 0.108804 TGATTCCGCTCGTTCCTGTC 60.109 55.000 0.00 0.00 0.00 3.51
1567 1648 0.320374 TTGATTCCGCTCGTTCCTGT 59.680 50.000 0.00 0.00 0.00 4.00
1568 1649 1.328680 CATTGATTCCGCTCGTTCCTG 59.671 52.381 0.00 0.00 0.00 3.86
1569 1650 1.066143 ACATTGATTCCGCTCGTTCCT 60.066 47.619 0.00 0.00 0.00 3.36
1570 1651 1.062587 CACATTGATTCCGCTCGTTCC 59.937 52.381 0.00 0.00 0.00 3.62
1571 1652 1.732259 ACACATTGATTCCGCTCGTTC 59.268 47.619 0.00 0.00 0.00 3.95
1572 1653 1.808411 ACACATTGATTCCGCTCGTT 58.192 45.000 0.00 0.00 0.00 3.85
1573 1654 1.732259 GAACACATTGATTCCGCTCGT 59.268 47.619 0.00 0.00 0.00 4.18
1574 1655 2.002586 AGAACACATTGATTCCGCTCG 58.997 47.619 0.00 0.00 0.00 5.03
1575 1656 5.741388 ATTAGAACACATTGATTCCGCTC 57.259 39.130 0.00 0.00 0.00 5.03
1576 1657 6.375455 AGAAATTAGAACACATTGATTCCGCT 59.625 34.615 0.00 0.00 0.00 5.52
1577 1658 6.470235 CAGAAATTAGAACACATTGATTCCGC 59.530 38.462 0.00 0.00 0.00 5.54
1578 1659 6.470235 GCAGAAATTAGAACACATTGATTCCG 59.530 38.462 0.00 0.00 0.00 4.30
1579 1660 6.753744 GGCAGAAATTAGAACACATTGATTCC 59.246 38.462 0.00 0.00 0.00 3.01
1580 1661 6.753744 GGGCAGAAATTAGAACACATTGATTC 59.246 38.462 0.00 0.00 0.00 2.52
1581 1662 6.438425 AGGGCAGAAATTAGAACACATTGATT 59.562 34.615 0.00 0.00 0.00 2.57
1582 1663 5.954150 AGGGCAGAAATTAGAACACATTGAT 59.046 36.000 0.00 0.00 0.00 2.57
1583 1664 5.324409 AGGGCAGAAATTAGAACACATTGA 58.676 37.500 0.00 0.00 0.00 2.57
1584 1665 5.649782 AGGGCAGAAATTAGAACACATTG 57.350 39.130 0.00 0.00 0.00 2.82
1585 1666 5.567423 GCAAGGGCAGAAATTAGAACACATT 60.567 40.000 0.00 0.00 40.72 2.71
1586 1667 4.082026 GCAAGGGCAGAAATTAGAACACAT 60.082 41.667 0.00 0.00 40.72 3.21
1587 1668 3.255642 GCAAGGGCAGAAATTAGAACACA 59.744 43.478 0.00 0.00 40.72 3.72
1588 1669 3.838120 GCAAGGGCAGAAATTAGAACAC 58.162 45.455 0.00 0.00 40.72 3.32
1602 1683 3.134127 GATGGTCGGTGCAAGGGC 61.134 66.667 0.00 0.00 41.68 5.19
1603 1684 2.438434 GGATGGTCGGTGCAAGGG 60.438 66.667 0.00 0.00 0.00 3.95
1604 1685 1.303236 TTGGATGGTCGGTGCAAGG 60.303 57.895 0.00 0.00 0.00 3.61
1605 1686 1.875963 GTTGGATGGTCGGTGCAAG 59.124 57.895 0.00 0.00 0.00 4.01
1606 1687 1.963855 CGTTGGATGGTCGGTGCAA 60.964 57.895 0.00 0.00 0.00 4.08
1607 1688 2.358125 CGTTGGATGGTCGGTGCA 60.358 61.111 0.00 0.00 0.00 4.57
1608 1689 3.124921 CCGTTGGATGGTCGGTGC 61.125 66.667 0.00 0.00 39.51 5.01
1609 1690 1.740296 GTCCGTTGGATGGTCGGTG 60.740 63.158 0.00 0.00 43.94 4.94
1610 1691 2.660802 GTCCGTTGGATGGTCGGT 59.339 61.111 0.00 0.00 43.94 4.69
1611 1692 2.125269 GGTCCGTTGGATGGTCGG 60.125 66.667 0.00 0.00 44.76 4.79
1612 1693 1.089481 CATGGTCCGTTGGATGGTCG 61.089 60.000 0.00 0.00 32.73 4.79
1613 1694 0.748005 CCATGGTCCGTTGGATGGTC 60.748 60.000 2.57 0.00 34.81 4.02
1614 1695 1.204786 TCCATGGTCCGTTGGATGGT 61.205 55.000 12.58 0.00 37.10 3.55
1615 1696 1.607071 TCCATGGTCCGTTGGATGG 59.393 57.895 12.58 4.36 37.10 3.51
1618 1699 3.349022 GTTTAATCCATGGTCCGTTGGA 58.651 45.455 12.58 14.10 45.69 3.53
1619 1700 2.096819 CGTTTAATCCATGGTCCGTTGG 59.903 50.000 12.58 4.58 0.00 3.77
1620 1701 2.096819 CCGTTTAATCCATGGTCCGTTG 59.903 50.000 12.58 0.00 0.00 4.10
1621 1702 2.361789 CCGTTTAATCCATGGTCCGTT 58.638 47.619 12.58 5.73 0.00 4.44
1622 1703 2.015081 GCCGTTTAATCCATGGTCCGT 61.015 52.381 12.58 0.00 0.00 4.69
1623 1704 0.661020 GCCGTTTAATCCATGGTCCG 59.339 55.000 12.58 6.12 0.00 4.79
1624 1705 1.029681 GGCCGTTTAATCCATGGTCC 58.970 55.000 12.58 0.00 0.00 4.46
1625 1706 1.404035 GTGGCCGTTTAATCCATGGTC 59.596 52.381 12.58 0.00 31.83 4.02
1626 1707 1.005450 AGTGGCCGTTTAATCCATGGT 59.995 47.619 12.58 0.00 31.83 3.55
1627 1708 1.405105 CAGTGGCCGTTTAATCCATGG 59.595 52.381 4.97 4.97 31.83 3.66
1628 1709 1.202290 GCAGTGGCCGTTTAATCCATG 60.202 52.381 0.00 0.00 31.83 3.66
1629 1710 1.102978 GCAGTGGCCGTTTAATCCAT 58.897 50.000 0.00 0.00 31.83 3.41
1630 1711 2.562125 GCAGTGGCCGTTTAATCCA 58.438 52.632 0.00 0.00 0.00 3.41
1641 1722 0.324943 TAGTCCTTTCAGGCAGTGGC 59.675 55.000 9.02 9.02 34.61 5.01
1642 1723 2.636830 CATAGTCCTTTCAGGCAGTGG 58.363 52.381 0.00 0.00 34.61 4.00
1643 1724 2.012673 GCATAGTCCTTTCAGGCAGTG 58.987 52.381 0.00 0.00 34.61 3.66
1644 1725 1.912043 AGCATAGTCCTTTCAGGCAGT 59.088 47.619 0.00 0.00 34.61 4.40
1645 1726 2.706339 AGCATAGTCCTTTCAGGCAG 57.294 50.000 0.00 0.00 34.61 4.85
1646 1727 3.455910 ACATAGCATAGTCCTTTCAGGCA 59.544 43.478 0.00 0.00 34.61 4.75
1647 1728 4.061596 GACATAGCATAGTCCTTTCAGGC 58.938 47.826 0.00 0.00 34.61 4.85
1656 1737 2.609747 TCCCCTGGACATAGCATAGTC 58.390 52.381 0.00 0.00 0.00 2.59
1657 1738 2.795291 TCCCCTGGACATAGCATAGT 57.205 50.000 0.00 0.00 0.00 2.12
1671 1752 3.910784 TTAGAACCGGCGGTCCCCT 62.911 63.158 34.23 28.26 33.12 4.79
1672 1753 3.393106 TTAGAACCGGCGGTCCCC 61.393 66.667 34.23 23.16 33.12 4.81
1673 1754 2.125391 GTTAGAACCGGCGGTCCC 60.125 66.667 34.23 25.74 33.12 4.46
1674 1755 2.125391 GGTTAGAACCGGCGGTCC 60.125 66.667 34.23 24.55 39.66 4.46
1682 1763 2.195741 AAGGAAAGGCGGTTAGAACC 57.804 50.000 0.99 0.99 45.76 3.62
1683 1764 4.758674 ACTTAAAGGAAAGGCGGTTAGAAC 59.241 41.667 0.00 0.00 0.00 3.01
1684 1765 4.976864 ACTTAAAGGAAAGGCGGTTAGAA 58.023 39.130 0.00 0.00 0.00 2.10
1685 1766 4.628963 ACTTAAAGGAAAGGCGGTTAGA 57.371 40.909 0.00 0.00 0.00 2.10
1686 1767 5.239963 TGAAACTTAAAGGAAAGGCGGTTAG 59.760 40.000 0.00 0.00 0.00 2.34
1687 1768 5.131784 TGAAACTTAAAGGAAAGGCGGTTA 58.868 37.500 0.00 0.00 0.00 2.85
1688 1769 3.955551 TGAAACTTAAAGGAAAGGCGGTT 59.044 39.130 0.00 0.00 0.00 4.44
1689 1770 3.558033 TGAAACTTAAAGGAAAGGCGGT 58.442 40.909 0.00 0.00 0.00 5.68
1690 1771 3.568430 ACTGAAACTTAAAGGAAAGGCGG 59.432 43.478 0.00 0.00 0.00 6.13
1691 1772 4.830826 ACTGAAACTTAAAGGAAAGGCG 57.169 40.909 0.00 0.00 0.00 5.52
1692 1773 8.357402 TCAAATACTGAAACTTAAAGGAAAGGC 58.643 33.333 0.00 0.00 0.00 4.35
1745 1826 9.091220 GCCCTTCTTCTCCTATTCTATACTAAA 57.909 37.037 0.00 0.00 0.00 1.85
1746 1827 8.457757 AGCCCTTCTTCTCCTATTCTATACTAA 58.542 37.037 0.00 0.00 0.00 2.24
1747 1828 8.002431 AGCCCTTCTTCTCCTATTCTATACTA 57.998 38.462 0.00 0.00 0.00 1.82
1748 1829 6.869930 AGCCCTTCTTCTCCTATTCTATACT 58.130 40.000 0.00 0.00 0.00 2.12
1749 1830 7.547697 AAGCCCTTCTTCTCCTATTCTATAC 57.452 40.000 0.00 0.00 0.00 1.47
1750 1831 7.784470 GAAGCCCTTCTTCTCCTATTCTATA 57.216 40.000 0.88 0.00 45.99 1.31
1751 1832 6.680148 GAAGCCCTTCTTCTCCTATTCTAT 57.320 41.667 0.88 0.00 45.99 1.98
1780 1861 0.552848 ACATGCTGGAATACTGGGGG 59.447 55.000 0.00 0.00 0.00 5.40
1781 1862 2.811873 GCTACATGCTGGAATACTGGGG 60.812 54.545 0.00 0.00 38.95 4.96
1782 1863 2.498167 GCTACATGCTGGAATACTGGG 58.502 52.381 0.00 0.00 38.95 4.45
1794 1875 3.652274 TGCCTTTTTCAAAGCTACATGC 58.348 40.909 0.00 0.00 43.29 4.06
1795 1876 4.687483 CCTTGCCTTTTTCAAAGCTACATG 59.313 41.667 0.00 0.00 0.00 3.21
1796 1877 4.344968 ACCTTGCCTTTTTCAAAGCTACAT 59.655 37.500 0.00 0.00 0.00 2.29
1797 1878 3.704061 ACCTTGCCTTTTTCAAAGCTACA 59.296 39.130 0.00 0.00 0.00 2.74
1798 1879 4.051237 CACCTTGCCTTTTTCAAAGCTAC 58.949 43.478 0.00 0.00 0.00 3.58
1799 1880 3.704061 ACACCTTGCCTTTTTCAAAGCTA 59.296 39.130 0.00 0.00 0.00 3.32
1800 1881 2.501316 ACACCTTGCCTTTTTCAAAGCT 59.499 40.909 0.00 0.00 0.00 3.74
1801 1882 2.905075 ACACCTTGCCTTTTTCAAAGC 58.095 42.857 0.00 0.00 0.00 3.51
1802 1883 4.252878 ACAACACCTTGCCTTTTTCAAAG 58.747 39.130 0.00 0.00 0.00 2.77
1803 1884 4.278975 ACAACACCTTGCCTTTTTCAAA 57.721 36.364 0.00 0.00 0.00 2.69
1804 1885 3.971245 ACAACACCTTGCCTTTTTCAA 57.029 38.095 0.00 0.00 0.00 2.69
1805 1886 3.259374 TGAACAACACCTTGCCTTTTTCA 59.741 39.130 0.00 0.00 0.00 2.69
1806 1887 3.855858 TGAACAACACCTTGCCTTTTTC 58.144 40.909 0.00 0.00 0.00 2.29
1807 1888 3.971245 TGAACAACACCTTGCCTTTTT 57.029 38.095 0.00 0.00 0.00 1.94
1808 1889 3.369366 CCTTGAACAACACCTTGCCTTTT 60.369 43.478 0.00 0.00 0.00 2.27
1809 1890 2.168313 CCTTGAACAACACCTTGCCTTT 59.832 45.455 0.00 0.00 0.00 3.11
1810 1891 1.756538 CCTTGAACAACACCTTGCCTT 59.243 47.619 0.00 0.00 0.00 4.35
1811 1892 1.341976 ACCTTGAACAACACCTTGCCT 60.342 47.619 0.00 0.00 0.00 4.75
1812 1893 1.111277 ACCTTGAACAACACCTTGCC 58.889 50.000 0.00 0.00 0.00 4.52
1813 1894 2.959507 AACCTTGAACAACACCTTGC 57.040 45.000 0.00 0.00 0.00 4.01
1814 1895 3.447229 AGGAAACCTTGAACAACACCTTG 59.553 43.478 0.00 0.00 0.00 3.61
1815 1896 3.708451 AGGAAACCTTGAACAACACCTT 58.292 40.909 0.00 0.00 0.00 3.50
1816 1897 3.382083 AGGAAACCTTGAACAACACCT 57.618 42.857 0.00 0.00 0.00 4.00
1817 1898 4.217767 GGATAGGAAACCTTGAACAACACC 59.782 45.833 0.00 0.00 34.61 4.16
1818 1899 4.217767 GGGATAGGAAACCTTGAACAACAC 59.782 45.833 0.00 0.00 34.61 3.32
1819 1900 4.141135 TGGGATAGGAAACCTTGAACAACA 60.141 41.667 0.00 0.00 34.61 3.33
1820 1901 4.403734 TGGGATAGGAAACCTTGAACAAC 58.596 43.478 0.00 0.00 34.61 3.32
1821 1902 4.733077 TGGGATAGGAAACCTTGAACAA 57.267 40.909 0.00 0.00 34.61 2.83
1822 1903 4.946160 ATGGGATAGGAAACCTTGAACA 57.054 40.909 0.00 0.00 34.61 3.18
1823 1904 5.261216 TGAATGGGATAGGAAACCTTGAAC 58.739 41.667 0.00 0.00 34.61 3.18
1824 1905 5.528600 TGAATGGGATAGGAAACCTTGAA 57.471 39.130 0.00 0.00 34.61 2.69
1825 1906 5.222233 TGTTGAATGGGATAGGAAACCTTGA 60.222 40.000 0.00 0.00 34.61 3.02
1826 1907 5.016173 TGTTGAATGGGATAGGAAACCTTG 58.984 41.667 0.00 0.00 34.61 3.61
1827 1908 5.269554 TGTTGAATGGGATAGGAAACCTT 57.730 39.130 0.00 0.00 34.61 3.50
1828 1909 4.946160 TGTTGAATGGGATAGGAAACCT 57.054 40.909 0.00 0.00 37.71 3.50
1829 1910 6.544928 AAATGTTGAATGGGATAGGAAACC 57.455 37.500 0.00 0.00 0.00 3.27
1830 1911 8.527810 TGTAAAATGTTGAATGGGATAGGAAAC 58.472 33.333 0.00 0.00 0.00 2.78
1831 1912 8.657387 TGTAAAATGTTGAATGGGATAGGAAA 57.343 30.769 0.00 0.00 0.00 3.13
1832 1913 8.837099 ATGTAAAATGTTGAATGGGATAGGAA 57.163 30.769 0.00 0.00 0.00 3.36
1833 1914 8.837099 AATGTAAAATGTTGAATGGGATAGGA 57.163 30.769 0.00 0.00 0.00 2.94
1834 1915 9.889128 AAAATGTAAAATGTTGAATGGGATAGG 57.111 29.630 0.00 0.00 0.00 2.57
1836 1917 9.664332 CCAAAATGTAAAATGTTGAATGGGATA 57.336 29.630 0.00 0.00 0.00 2.59
1837 1918 7.121020 GCCAAAATGTAAAATGTTGAATGGGAT 59.879 33.333 0.00 0.00 0.00 3.85
1838 1919 6.429385 GCCAAAATGTAAAATGTTGAATGGGA 59.571 34.615 0.00 0.00 0.00 4.37
1839 1920 6.610456 GCCAAAATGTAAAATGTTGAATGGG 58.390 36.000 0.00 0.00 0.00 4.00
1840 1921 6.305639 CGCCAAAATGTAAAATGTTGAATGG 58.694 36.000 0.00 0.00 0.00 3.16
1841 1922 5.789512 GCGCCAAAATGTAAAATGTTGAATG 59.210 36.000 0.00 0.00 0.00 2.67
1842 1923 5.468072 TGCGCCAAAATGTAAAATGTTGAAT 59.532 32.000 4.18 0.00 0.00 2.57
1843 1924 4.811024 TGCGCCAAAATGTAAAATGTTGAA 59.189 33.333 4.18 0.00 0.00 2.69
1844 1925 4.371786 TGCGCCAAAATGTAAAATGTTGA 58.628 34.783 4.18 0.00 0.00 3.18
1845 1926 4.722203 TGCGCCAAAATGTAAAATGTTG 57.278 36.364 4.18 0.00 0.00 3.33
1846 1927 5.938438 ATTGCGCCAAAATGTAAAATGTT 57.062 30.435 4.18 0.00 0.00 2.71
1847 1928 8.885494 ATATATTGCGCCAAAATGTAAAATGT 57.115 26.923 4.18 0.00 0.00 2.71
1854 1935 8.413229 GGGATATAATATATTGCGCCAAAATGT 58.587 33.333 4.18 0.00 0.00 2.71
1855 1936 8.632679 AGGGATATAATATATTGCGCCAAAATG 58.367 33.333 4.18 0.00 0.00 2.32
1856 1937 8.766994 AGGGATATAATATATTGCGCCAAAAT 57.233 30.769 4.18 0.00 0.00 1.82
1857 1938 8.588290 AAGGGATATAATATATTGCGCCAAAA 57.412 30.769 4.18 0.00 0.00 2.44
1858 1939 7.284489 GGAAGGGATATAATATATTGCGCCAAA 59.716 37.037 4.18 0.00 0.00 3.28
1859 1940 6.770785 GGAAGGGATATAATATATTGCGCCAA 59.229 38.462 4.18 0.00 0.00 4.52
1860 1941 6.101150 AGGAAGGGATATAATATATTGCGCCA 59.899 38.462 4.18 0.00 0.00 5.69
1861 1942 6.534634 AGGAAGGGATATAATATATTGCGCC 58.465 40.000 4.18 4.48 0.00 6.53
1862 1943 7.041098 CCAAGGAAGGGATATAATATATTGCGC 60.041 40.741 8.28 0.00 0.00 6.09
1863 1944 8.383318 CCAAGGAAGGGATATAATATATTGCG 57.617 38.462 8.28 0.00 0.00 4.85
1879 1960 0.538584 GTACCGTACCCCAAGGAAGG 59.461 60.000 0.00 0.00 36.73 3.46
1880 1961 0.538584 GGTACCGTACCCCAAGGAAG 59.461 60.000 15.95 0.00 43.18 3.46
1881 1962 2.682631 GGTACCGTACCCCAAGGAA 58.317 57.895 15.95 0.00 43.18 3.36
1882 1963 4.459199 GGTACCGTACCCCAAGGA 57.541 61.111 15.95 0.00 43.18 3.36
1904 1985 2.075338 CCCGTTGCCCAAATGAATTTG 58.925 47.619 8.51 8.51 45.04 2.32
1905 1986 1.974236 TCCCGTTGCCCAAATGAATTT 59.026 42.857 0.00 0.00 0.00 1.82
1906 1987 1.638529 TCCCGTTGCCCAAATGAATT 58.361 45.000 0.00 0.00 0.00 2.17
1907 1988 1.864669 ATCCCGTTGCCCAAATGAAT 58.135 45.000 0.00 0.00 0.00 2.57
1908 1989 2.516227 TATCCCGTTGCCCAAATGAA 57.484 45.000 0.00 0.00 0.00 2.57
1909 1990 2.516227 TTATCCCGTTGCCCAAATGA 57.484 45.000 0.00 0.00 0.00 2.57
1910 1991 4.927978 TTATTATCCCGTTGCCCAAATG 57.072 40.909 0.00 0.00 0.00 2.32
1911 1992 4.202212 GCTTTATTATCCCGTTGCCCAAAT 60.202 41.667 0.00 0.00 0.00 2.32
1912 1993 3.131400 GCTTTATTATCCCGTTGCCCAAA 59.869 43.478 0.00 0.00 0.00 3.28
1913 1994 2.691011 GCTTTATTATCCCGTTGCCCAA 59.309 45.455 0.00 0.00 0.00 4.12
1914 1995 2.303175 GCTTTATTATCCCGTTGCCCA 58.697 47.619 0.00 0.00 0.00 5.36
1915 1996 1.265905 CGCTTTATTATCCCGTTGCCC 59.734 52.381 0.00 0.00 0.00 5.36
1916 1997 2.215196 TCGCTTTATTATCCCGTTGCC 58.785 47.619 0.00 0.00 0.00 4.52
1917 1998 3.064271 TGTTCGCTTTATTATCCCGTTGC 59.936 43.478 0.00 0.00 0.00 4.17
1918 1999 4.868450 TGTTCGCTTTATTATCCCGTTG 57.132 40.909 0.00 0.00 0.00 4.10
1919 2000 5.644636 TCTTTGTTCGCTTTATTATCCCGTT 59.355 36.000 0.00 0.00 0.00 4.44
1920 2001 5.064325 GTCTTTGTTCGCTTTATTATCCCGT 59.936 40.000 0.00 0.00 0.00 5.28
1921 2002 5.499047 GTCTTTGTTCGCTTTATTATCCCG 58.501 41.667 0.00 0.00 0.00 5.14
1922 2003 5.355910 TGGTCTTTGTTCGCTTTATTATCCC 59.644 40.000 0.00 0.00 0.00 3.85
1923 2004 6.431198 TGGTCTTTGTTCGCTTTATTATCC 57.569 37.500 0.00 0.00 0.00 2.59
1924 2005 9.997482 TTTATGGTCTTTGTTCGCTTTATTATC 57.003 29.630 0.00 0.00 0.00 1.75
1927 2008 9.191995 CTTTTTATGGTCTTTGTTCGCTTTATT 57.808 29.630 0.00 0.00 0.00 1.40
1928 2009 8.573035 TCTTTTTATGGTCTTTGTTCGCTTTAT 58.427 29.630 0.00 0.00 0.00 1.40
1929 2010 7.932335 TCTTTTTATGGTCTTTGTTCGCTTTA 58.068 30.769 0.00 0.00 0.00 1.85
1930 2011 6.801575 TCTTTTTATGGTCTTTGTTCGCTTT 58.198 32.000 0.00 0.00 0.00 3.51
1931 2012 6.262273 TCTCTTTTTATGGTCTTTGTTCGCTT 59.738 34.615 0.00 0.00 0.00 4.68
1932 2013 5.763204 TCTCTTTTTATGGTCTTTGTTCGCT 59.237 36.000 0.00 0.00 0.00 4.93
1933 2014 5.997385 TCTCTTTTTATGGTCTTTGTTCGC 58.003 37.500 0.00 0.00 0.00 4.70
1934 2015 9.543018 GTAATCTCTTTTTATGGTCTTTGTTCG 57.457 33.333 0.00 0.00 0.00 3.95
1941 2022 9.178758 GGATGTTGTAATCTCTTTTTATGGTCT 57.821 33.333 0.00 0.00 0.00 3.85
1942 2023 8.956426 TGGATGTTGTAATCTCTTTTTATGGTC 58.044 33.333 0.00 0.00 0.00 4.02
1943 2024 8.877864 TGGATGTTGTAATCTCTTTTTATGGT 57.122 30.769 0.00 0.00 0.00 3.55
1944 2025 9.177608 TCTGGATGTTGTAATCTCTTTTTATGG 57.822 33.333 0.00 0.00 0.00 2.74
1947 2028 9.567776 TGTTCTGGATGTTGTAATCTCTTTTTA 57.432 29.630 0.00 0.00 0.00 1.52
1948 2029 8.463930 TGTTCTGGATGTTGTAATCTCTTTTT 57.536 30.769 0.00 0.00 0.00 1.94
1949 2030 8.463930 TTGTTCTGGATGTTGTAATCTCTTTT 57.536 30.769 0.00 0.00 0.00 2.27
1950 2031 8.463930 TTTGTTCTGGATGTTGTAATCTCTTT 57.536 30.769 0.00 0.00 0.00 2.52
1951 2032 7.308830 GCTTTGTTCTGGATGTTGTAATCTCTT 60.309 37.037 0.00 0.00 0.00 2.85
1952 2033 6.150140 GCTTTGTTCTGGATGTTGTAATCTCT 59.850 38.462 0.00 0.00 0.00 3.10
1953 2034 6.317857 GCTTTGTTCTGGATGTTGTAATCTC 58.682 40.000 0.00 0.00 0.00 2.75
1954 2035 5.183904 GGCTTTGTTCTGGATGTTGTAATCT 59.816 40.000 0.00 0.00 0.00 2.40
1955 2036 5.183904 AGGCTTTGTTCTGGATGTTGTAATC 59.816 40.000 0.00 0.00 0.00 1.75
1956 2037 5.079643 AGGCTTTGTTCTGGATGTTGTAAT 58.920 37.500 0.00 0.00 0.00 1.89
1957 2038 4.469657 AGGCTTTGTTCTGGATGTTGTAA 58.530 39.130 0.00 0.00 0.00 2.41
1958 2039 4.098914 AGGCTTTGTTCTGGATGTTGTA 57.901 40.909 0.00 0.00 0.00 2.41
1959 2040 2.949447 AGGCTTTGTTCTGGATGTTGT 58.051 42.857 0.00 0.00 0.00 3.32
1960 2041 4.701651 TGATAGGCTTTGTTCTGGATGTTG 59.298 41.667 0.00 0.00 0.00 3.33
1961 2042 4.922206 TGATAGGCTTTGTTCTGGATGTT 58.078 39.130 0.00 0.00 0.00 2.71
1962 2043 4.574674 TGATAGGCTTTGTTCTGGATGT 57.425 40.909 0.00 0.00 0.00 3.06
1963 2044 4.201990 GCTTGATAGGCTTTGTTCTGGATG 60.202 45.833 0.00 0.00 0.00 3.51
1964 2045 3.950395 GCTTGATAGGCTTTGTTCTGGAT 59.050 43.478 0.00 0.00 0.00 3.41
1965 2046 3.347216 GCTTGATAGGCTTTGTTCTGGA 58.653 45.455 0.00 0.00 0.00 3.86
1966 2047 2.424956 GGCTTGATAGGCTTTGTTCTGG 59.575 50.000 0.00 0.00 43.31 3.86
1967 2048 3.084039 TGGCTTGATAGGCTTTGTTCTG 58.916 45.455 0.00 0.00 46.59 3.02
1968 2049 3.439857 TGGCTTGATAGGCTTTGTTCT 57.560 42.857 0.00 0.00 46.59 3.01
1969 2050 3.367395 GGTTGGCTTGATAGGCTTTGTTC 60.367 47.826 0.00 0.00 46.59 3.18
1970 2051 2.562738 GGTTGGCTTGATAGGCTTTGTT 59.437 45.455 0.00 0.00 46.59 2.83
1971 2052 2.171003 GGTTGGCTTGATAGGCTTTGT 58.829 47.619 0.00 0.00 46.59 2.83
1972 2053 2.450476 AGGTTGGCTTGATAGGCTTTG 58.550 47.619 0.00 0.00 46.59 2.77
1973 2054 2.907458 AGGTTGGCTTGATAGGCTTT 57.093 45.000 0.00 0.00 46.59 3.51
1974 2055 2.621668 GGAAGGTTGGCTTGATAGGCTT 60.622 50.000 0.00 0.00 46.59 4.35
1975 2056 1.064389 GGAAGGTTGGCTTGATAGGCT 60.064 52.381 0.00 0.00 46.59 4.58
1976 2057 1.393603 GGAAGGTTGGCTTGATAGGC 58.606 55.000 0.00 0.00 46.64 3.93
1977 2058 1.566231 AGGGAAGGTTGGCTTGATAGG 59.434 52.381 0.00 0.00 0.00 2.57
1978 2059 2.239654 TGAGGGAAGGTTGGCTTGATAG 59.760 50.000 0.00 0.00 0.00 2.08
1979 2060 2.026262 GTGAGGGAAGGTTGGCTTGATA 60.026 50.000 0.00 0.00 0.00 2.15
1980 2061 1.075601 TGAGGGAAGGTTGGCTTGAT 58.924 50.000 0.00 0.00 0.00 2.57
1981 2062 0.110486 GTGAGGGAAGGTTGGCTTGA 59.890 55.000 0.00 0.00 0.00 3.02
1982 2063 0.111253 AGTGAGGGAAGGTTGGCTTG 59.889 55.000 0.00 0.00 0.00 4.01
1983 2064 0.111253 CAGTGAGGGAAGGTTGGCTT 59.889 55.000 0.00 0.00 0.00 4.35
1984 2065 1.763770 CAGTGAGGGAAGGTTGGCT 59.236 57.895 0.00 0.00 0.00 4.75
1985 2066 1.973812 GCAGTGAGGGAAGGTTGGC 60.974 63.158 0.00 0.00 0.00 4.52
1986 2067 1.672356 CGCAGTGAGGGAAGGTTGG 60.672 63.158 0.00 0.00 0.00 3.77
1987 2068 1.672356 CCGCAGTGAGGGAAGGTTG 60.672 63.158 4.74 0.00 0.00 3.77
1988 2069 2.147387 ACCGCAGTGAGGGAAGGTT 61.147 57.895 17.87 0.00 0.00 3.50
1989 2070 2.526873 ACCGCAGTGAGGGAAGGT 60.527 61.111 17.87 1.83 0.00 3.50
1999 2080 3.367743 CCATGCTTGCACCGCAGT 61.368 61.111 14.35 2.31 40.61 4.40
2000 2081 3.367743 ACCATGCTTGCACCGCAG 61.368 61.111 14.35 5.67 40.61 5.18
2001 2082 3.672447 CACCATGCTTGCACCGCA 61.672 61.111 11.79 11.79 42.25 5.69
2003 2084 4.424566 GGCACCATGCTTGCACCG 62.425 66.667 16.71 0.00 44.28 4.94
2004 2085 2.993264 AGGCACCATGCTTGCACC 60.993 61.111 16.71 3.61 44.28 5.01
2018 2099 5.835113 TCTAAATTACCTTTGCATGAGGC 57.165 39.130 14.73 0.00 45.13 4.70
2064 2145 5.102953 ACCTGACTGCATCTAAAATAGCA 57.897 39.130 0.00 0.00 35.43 3.49
2092 2173 9.729023 TTTCGTATTATGCTATCCAAACATTTG 57.271 29.630 0.00 0.00 37.90 2.32
2113 2199 7.767659 GGTATAAAATGTAGGAGTCCTTTTCGT 59.232 37.037 19.06 7.26 34.61 3.85
2138 2224 5.756833 ACGAAAAAGAAACTACTACCTGTGG 59.243 40.000 0.00 0.00 0.00 4.17
2141 2227 6.418819 TCGAACGAAAAAGAAACTACTACCTG 59.581 38.462 0.00 0.00 0.00 4.00
2145 2231 5.922544 CCCTCGAACGAAAAAGAAACTACTA 59.077 40.000 0.00 0.00 0.00 1.82
2154 2240 1.774639 TCGTCCCTCGAACGAAAAAG 58.225 50.000 8.29 0.00 45.36 2.27
2164 2253 5.892160 TTATTACATCCTATCGTCCCTCG 57.108 43.478 0.00 0.00 41.41 4.63
2230 2319 6.600882 TGTTTGGGGTGTTTTGTACTTTTA 57.399 33.333 0.00 0.00 0.00 1.52
2231 2320 5.485209 TGTTTGGGGTGTTTTGTACTTTT 57.515 34.783 0.00 0.00 0.00 2.27
2259 2348 6.826668 TGTCCATTGACCTCGATGTAATATT 58.173 36.000 0.00 0.00 41.01 1.28
2261 2350 5.862678 TGTCCATTGACCTCGATGTAATA 57.137 39.130 0.00 0.00 41.01 0.98
2275 2364 1.635663 GGTCGCTCGGTTGTCCATTG 61.636 60.000 0.00 0.00 0.00 2.82
2305 2394 2.743928 GCTGGTGGCTCGTTCTGG 60.744 66.667 0.00 0.00 38.06 3.86
2328 2417 1.523938 GTATGGAAGGGGCGACAGC 60.524 63.158 0.00 0.00 44.18 4.40
2330 2419 2.727392 CCGTATGGAAGGGGCGACA 61.727 63.158 0.00 0.00 37.49 4.35
2331 2420 2.108362 CCGTATGGAAGGGGCGAC 59.892 66.667 0.00 0.00 37.49 5.19
2332 2421 2.042741 TCCGTATGGAAGGGGCGA 60.043 61.111 0.00 0.00 42.85 5.54
2333 2422 2.421739 CTCCGTATGGAAGGGGCG 59.578 66.667 4.92 0.00 45.87 6.13
2336 2425 0.541863 ACAAGCTCCGTATGGAAGGG 59.458 55.000 4.92 0.00 45.87 3.95
2337 2426 1.802880 CGACAAGCTCCGTATGGAAGG 60.803 57.143 4.92 0.00 45.87 3.46
2338 2427 1.134367 TCGACAAGCTCCGTATGGAAG 59.866 52.381 4.92 0.89 45.87 3.46
2339 2428 1.179152 TCGACAAGCTCCGTATGGAA 58.821 50.000 4.92 0.00 45.87 3.53
2340 2429 1.399714 ATCGACAAGCTCCGTATGGA 58.600 50.000 3.02 3.02 43.88 3.41
2342 2431 3.702330 TGTTATCGACAAGCTCCGTATG 58.298 45.455 0.00 0.00 34.69 2.39
2343 2432 4.380841 TTGTTATCGACAAGCTCCGTAT 57.619 40.909 0.00 0.00 43.13 3.06
2344 2433 3.853831 TTGTTATCGACAAGCTCCGTA 57.146 42.857 0.00 0.00 43.13 4.02
2360 2449 4.571580 TGTCACGAATACTTTTCGGTTGTT 59.428 37.500 11.83 0.00 45.34 2.83
2364 2453 3.124636 GCATGTCACGAATACTTTTCGGT 59.875 43.478 11.83 0.00 45.34 4.69
2367 2456 3.181500 GGGGCATGTCACGAATACTTTTC 60.181 47.826 0.00 0.00 0.00 2.29
2368 2457 2.752903 GGGGCATGTCACGAATACTTTT 59.247 45.455 0.00 0.00 0.00 2.27
2374 2463 1.134098 CCTTAGGGGCATGTCACGAAT 60.134 52.381 0.00 0.00 0.00 3.34
2381 2470 1.926426 GCTGGTCCTTAGGGGCATGT 61.926 60.000 0.00 0.00 39.39 3.21
2382 2471 1.152881 GCTGGTCCTTAGGGGCATG 60.153 63.158 0.00 0.00 39.39 4.06
2383 2472 2.746375 CGCTGGTCCTTAGGGGCAT 61.746 63.158 0.00 0.00 39.39 4.40
2384 2473 3.399181 CGCTGGTCCTTAGGGGCA 61.399 66.667 0.00 0.00 39.39 5.36
2388 2478 1.153628 CCGAACGCTGGTCCTTAGG 60.154 63.158 0.00 0.00 0.00 2.69
2396 2486 2.978452 CTATGGCTCCCGAACGCTGG 62.978 65.000 0.00 0.00 0.00 4.85
2412 2502 2.365617 AGGATTCAATGGCGACGACTAT 59.634 45.455 0.65 0.00 0.00 2.12
2416 2506 2.107950 AAAGGATTCAATGGCGACGA 57.892 45.000 0.00 0.00 0.00 4.20
2420 2510 6.639686 CAGATTGATTAAAGGATTCAATGGCG 59.360 38.462 6.07 0.00 0.00 5.69
2435 2525 6.775142 TGGTGTCAGGTTTTTCAGATTGATTA 59.225 34.615 0.00 0.00 0.00 1.75
2440 2530 5.930837 TTTGGTGTCAGGTTTTTCAGATT 57.069 34.783 0.00 0.00 0.00 2.40
2448 2538 2.223947 GGCGAAATTTGGTGTCAGGTTT 60.224 45.455 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.