Multiple sequence alignment - TraesCS3A01G327000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G327000 chr3A 100.000 2422 0 0 1 2422 572119874 572117453 0.000000e+00 4473.0
1 TraesCS3A01G327000 chr3A 84.348 115 15 2 1310 1424 572038813 572038702 2.550000e-20 110.0
2 TraesCS3A01G327000 chr3A 82.500 120 17 3 1306 1424 572043650 572043534 4.260000e-18 102.0
3 TraesCS3A01G327000 chr3A 95.745 47 2 0 1855 1901 572117935 572117889 2.580000e-10 76.8
4 TraesCS3A01G327000 chr3A 95.745 47 2 0 1940 1986 572118020 572117974 2.580000e-10 76.8
5 TraesCS3A01G327000 chr3D 87.388 1673 74 56 1 1575 433555360 433553727 0.000000e+00 1794.0
6 TraesCS3A01G327000 chr3D 90.342 497 31 10 1936 2415 433553491 433552995 9.450000e-179 636.0
7 TraesCS3A01G327000 chr3D 91.121 214 8 3 1656 1864 433553728 433553521 1.830000e-71 279.0
8 TraesCS3A01G327000 chr3D 92.929 99 4 2 1565 1660 439870624 439870526 9.030000e-30 141.0
9 TraesCS3A01G327000 chr3D 97.561 41 0 1 1861 1900 433553482 433553442 4.320000e-08 69.4
10 TraesCS3A01G327000 chr3B 88.467 1318 66 36 320 1574 566642180 566640886 0.000000e+00 1513.0
11 TraesCS3A01G327000 chr3B 88.657 335 24 9 2081 2409 566640285 566639959 1.750000e-106 396.0
12 TraesCS3A01G327000 chr3B 94.142 239 10 2 3 241 566643325 566643091 6.370000e-96 361.0
13 TraesCS3A01G327000 chr3B 88.835 206 7 5 1669 1864 566640857 566640658 3.110000e-59 239.0
14 TraesCS3A01G327000 chr1B 95.876 97 1 2 1563 1657 554222420 554222515 1.160000e-33 154.0
15 TraesCS3A01G327000 chr6A 95.833 96 1 2 1565 1658 63583190 63583284 4.170000e-33 152.0
16 TraesCS3A01G327000 chr5A 96.591 88 3 0 1578 1665 155555973 155555886 1.940000e-31 147.0
17 TraesCS3A01G327000 chr7B 94.624 93 3 1 1568 1658 616625139 616625047 2.510000e-30 143.0
18 TraesCS3A01G327000 chr7B 96.429 84 3 0 1578 1661 29827082 29826999 3.250000e-29 139.0
19 TraesCS3A01G327000 chr2A 93.750 96 4 1 1571 1664 18339608 18339513 2.510000e-30 143.0
20 TraesCS3A01G327000 chr2B 93.548 93 4 1 1571 1661 357917645 357917553 1.170000e-28 137.0
21 TraesCS3A01G327000 chr4A 89.091 110 6 5 1561 1667 38740543 38740437 5.430000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G327000 chr3A 572117453 572119874 2421 True 1542.20 4473 97.163333 1 2422 3 chr3A.!!$R3 2421
1 TraesCS3A01G327000 chr3D 433552995 433555360 2365 True 694.60 1794 91.603000 1 2415 4 chr3D.!!$R2 2414
2 TraesCS3A01G327000 chr3B 566639959 566643325 3366 True 627.25 1513 90.025250 3 2409 4 chr3B.!!$R1 2406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 161 0.389426 TTCTTCGAGGCTACGGCAAC 60.389 55.0 6.53 0.0 40.87 4.17 F
242 254 0.538516 TGGCCGTTGCACCAAGTATT 60.539 50.0 0.00 0.0 40.13 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1084 1994 0.107214 CCCCATGCGTGTGGAACTAT 60.107 55.0 0.28 0.0 42.02 2.12 R
1889 2858 0.178964 TTCCAGGTTTGGCTTCTGGG 60.179 55.0 8.50 0.0 45.89 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 161 0.389426 TTCTTCGAGGCTACGGCAAC 60.389 55.000 6.53 0.00 40.87 4.17
183 195 3.345714 CACTTGCGAGCACGAATTAATC 58.654 45.455 8.01 0.00 42.66 1.75
199 211 7.038048 CGAATTAATCTGCATCTCCAGCTATA 58.962 38.462 0.00 0.00 32.87 1.31
210 222 1.203137 TCCAGCTATACCCGGTAGCAT 60.203 52.381 20.93 6.92 45.41 3.79
242 254 0.538516 TGGCCGTTGCACCAAGTATT 60.539 50.000 0.00 0.00 40.13 1.89
244 256 1.813786 GGCCGTTGCACCAAGTATTAA 59.186 47.619 0.00 0.00 40.13 1.40
248 260 5.032220 GCCGTTGCACCAAGTATTAATAAC 58.968 41.667 0.00 0.00 37.47 1.89
297 1153 7.519002 AGTGCAATTAATTAACTCGAACTGTC 58.481 34.615 0.00 0.00 0.00 3.51
299 1155 8.653338 GTGCAATTAATTAACTCGAACTGTCTA 58.347 33.333 0.00 0.00 0.00 2.59
816 1703 2.819595 CCACTCGCAACCATCCGG 60.820 66.667 0.00 0.00 38.77 5.14
836 1723 4.944372 CGGCGCCCACGTAGGATC 62.944 72.222 23.46 0.00 42.83 3.36
838 1725 4.603946 GCGCCCACGTAGGATCCC 62.604 72.222 8.55 0.00 42.83 3.85
851 1740 1.146263 GATCCCATCCCCACGTCAC 59.854 63.158 0.00 0.00 0.00 3.67
852 1741 2.325393 GATCCCATCCCCACGTCACC 62.325 65.000 0.00 0.00 0.00 4.02
927 1816 2.436824 GTTCGCTCCAAGCCTCCC 60.437 66.667 0.00 0.00 38.18 4.30
1068 1978 1.484653 GAGGAGGAAGAAGAAGGCTCC 59.515 57.143 0.00 0.00 0.00 4.70
1069 1979 1.203364 AGGAGGAAGAAGAAGGCTCCA 60.203 52.381 0.00 0.00 32.39 3.86
1070 1980 1.843206 GGAGGAAGAAGAAGGCTCCAT 59.157 52.381 0.00 0.00 0.00 3.41
1071 1981 2.158827 GGAGGAAGAAGAAGGCTCCATC 60.159 54.545 0.00 0.00 0.00 3.51
1072 1982 2.771372 GAGGAAGAAGAAGGCTCCATCT 59.229 50.000 0.00 0.00 0.00 2.90
1073 1983 3.964031 GAGGAAGAAGAAGGCTCCATCTA 59.036 47.826 0.00 0.00 0.00 1.98
1078 1988 6.440328 GGAAGAAGAAGGCTCCATCTATCTAT 59.560 42.308 0.00 0.00 0.00 1.98
1082 1992 7.834181 AGAAGAAGGCTCCATCTATCTATACTC 59.166 40.741 0.00 0.00 0.00 2.59
1083 1993 7.284014 AGAAGGCTCCATCTATCTATACTCT 57.716 40.000 0.00 0.00 0.00 3.24
1084 1994 8.400619 AGAAGGCTCCATCTATCTATACTCTA 57.599 38.462 0.00 0.00 0.00 2.43
1085 1995 9.014049 AGAAGGCTCCATCTATCTATACTCTAT 57.986 37.037 0.00 0.00 0.00 1.98
1241 2154 2.590007 ATCCGGATCAGCAAGCGC 60.590 61.111 12.38 0.00 38.99 5.92
1391 2316 4.785453 CACTGGAAGCCCGCCCTC 62.785 72.222 0.00 0.00 37.60 4.30
1481 2406 2.622962 CCGGGTTTGGGTTTCTCGC 61.623 63.158 0.00 0.00 0.00 5.03
1522 2462 0.663153 GCCGTGTCTCACAGCTTTTT 59.337 50.000 1.52 0.00 35.21 1.94
1523 2463 1.597937 GCCGTGTCTCACAGCTTTTTG 60.598 52.381 1.52 0.00 35.21 2.44
1538 2478 1.092345 TTTTGGCGGCCTTTTTGTGC 61.092 50.000 21.46 0.00 0.00 4.57
1575 2518 7.956420 TGGATCCAACGAACAATGTATATAC 57.044 36.000 13.46 5.89 0.00 1.47
1576 2519 7.732025 TGGATCCAACGAACAATGTATATACT 58.268 34.615 13.46 0.00 0.00 2.12
1577 2520 7.870954 TGGATCCAACGAACAATGTATATACTC 59.129 37.037 13.46 2.24 0.00 2.59
1578 2521 8.088981 GGATCCAACGAACAATGTATATACTCT 58.911 37.037 13.89 0.00 0.00 3.24
1579 2522 9.130312 GATCCAACGAACAATGTATATACTCTC 57.870 37.037 13.89 3.21 0.00 3.20
1580 2523 7.431249 TCCAACGAACAATGTATATACTCTCC 58.569 38.462 13.89 0.00 0.00 3.71
1581 2524 6.362551 CCAACGAACAATGTATATACTCTCCG 59.637 42.308 13.89 11.29 0.00 4.63
1582 2525 6.630444 ACGAACAATGTATATACTCTCCGT 57.370 37.500 13.89 11.81 0.00 4.69
1583 2526 7.035840 ACGAACAATGTATATACTCTCCGTT 57.964 36.000 13.89 9.56 0.00 4.44
1584 2527 7.137426 ACGAACAATGTATATACTCTCCGTTC 58.863 38.462 13.89 15.25 0.00 3.95
1585 2528 6.581542 CGAACAATGTATATACTCTCCGTTCC 59.418 42.308 13.89 4.91 0.00 3.62
1586 2529 6.971726 ACAATGTATATACTCTCCGTTCCA 57.028 37.500 13.89 0.00 0.00 3.53
1587 2530 7.356089 ACAATGTATATACTCTCCGTTCCAA 57.644 36.000 13.89 0.00 0.00 3.53
1588 2531 7.788026 ACAATGTATATACTCTCCGTTCCAAA 58.212 34.615 13.89 0.00 0.00 3.28
1589 2532 8.262227 ACAATGTATATACTCTCCGTTCCAAAA 58.738 33.333 13.89 0.00 0.00 2.44
1590 2533 9.273016 CAATGTATATACTCTCCGTTCCAAAAT 57.727 33.333 13.89 0.00 0.00 1.82
1593 2536 9.358406 TGTATATACTCTCCGTTCCAAAATAGA 57.642 33.333 13.89 0.00 0.00 1.98
1596 2539 5.677319 ACTCTCCGTTCCAAAATAGATGA 57.323 39.130 0.00 0.00 0.00 2.92
1597 2540 5.420409 ACTCTCCGTTCCAAAATAGATGAC 58.580 41.667 0.00 0.00 0.00 3.06
1598 2541 4.766375 TCTCCGTTCCAAAATAGATGACC 58.234 43.478 0.00 0.00 0.00 4.02
1599 2542 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1600 2543 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1601 2544 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1602 2545 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1603 2546 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1604 2547 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1605 2548 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1606 2549 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
1607 2550 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
1608 2551 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
1609 2552 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
1610 2553 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
1615 2558 7.750947 AGATGACCCAACTTTATACTAAGGT 57.249 36.000 0.00 0.00 0.00 3.50
1616 2559 7.793036 AGATGACCCAACTTTATACTAAGGTC 58.207 38.462 0.00 0.00 42.32 3.85
1618 2561 6.942976 TGACCCAACTTTATACTAAGGTCAG 58.057 40.000 4.50 0.00 45.63 3.51
1619 2562 6.499350 TGACCCAACTTTATACTAAGGTCAGT 59.501 38.462 4.50 0.00 45.63 3.41
1620 2563 7.675195 TGACCCAACTTTATACTAAGGTCAGTA 59.325 37.037 4.50 0.00 45.63 2.74
1621 2564 7.845037 ACCCAACTTTATACTAAGGTCAGTAC 58.155 38.462 0.00 0.00 33.94 2.73
1622 2565 7.455638 ACCCAACTTTATACTAAGGTCAGTACA 59.544 37.037 0.00 0.00 33.94 2.90
1623 2566 8.316214 CCCAACTTTATACTAAGGTCAGTACAA 58.684 37.037 0.00 0.00 33.94 2.41
1624 2567 9.715121 CCAACTTTATACTAAGGTCAGTACAAA 57.285 33.333 0.00 0.00 33.94 2.83
1629 2572 9.715121 TTTATACTAAGGTCAGTACAAAGTTGG 57.285 33.333 0.00 0.00 33.94 3.77
1630 2573 4.969484 ACTAAGGTCAGTACAAAGTTGGG 58.031 43.478 0.00 0.00 0.00 4.12
1631 2574 3.945640 AAGGTCAGTACAAAGTTGGGT 57.054 42.857 0.00 0.00 0.00 4.51
1632 2575 3.487120 AGGTCAGTACAAAGTTGGGTC 57.513 47.619 0.00 0.00 0.00 4.46
1633 2576 2.775384 AGGTCAGTACAAAGTTGGGTCA 59.225 45.455 0.00 0.00 0.00 4.02
1634 2577 3.394606 AGGTCAGTACAAAGTTGGGTCAT 59.605 43.478 0.00 0.00 0.00 3.06
1635 2578 3.751698 GGTCAGTACAAAGTTGGGTCATC 59.248 47.826 0.00 0.00 0.00 2.92
1636 2579 4.505039 GGTCAGTACAAAGTTGGGTCATCT 60.505 45.833 0.00 0.00 0.00 2.90
1637 2580 5.279809 GGTCAGTACAAAGTTGGGTCATCTA 60.280 44.000 0.00 0.00 0.00 1.98
1638 2581 6.407202 GTCAGTACAAAGTTGGGTCATCTAT 58.593 40.000 0.00 0.00 0.00 1.98
1639 2582 6.879458 GTCAGTACAAAGTTGGGTCATCTATT 59.121 38.462 0.00 0.00 0.00 1.73
1640 2583 7.390718 GTCAGTACAAAGTTGGGTCATCTATTT 59.609 37.037 0.00 0.00 0.00 1.40
1641 2584 7.942341 TCAGTACAAAGTTGGGTCATCTATTTT 59.058 33.333 0.00 0.00 0.00 1.82
1642 2585 8.023128 CAGTACAAAGTTGGGTCATCTATTTTG 58.977 37.037 0.00 0.00 0.00 2.44
1643 2586 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
1644 2587 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
1645 2588 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
1646 2589 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1647 2590 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1648 2591 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1649 2592 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1650 2593 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1651 2594 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
1652 2595 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1653 2596 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1654 2597 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1655 2598 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1656 2599 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1773 2741 1.299620 CTGCTGCTTTGTGTGTGGC 60.300 57.895 0.00 0.00 0.00 5.01
1864 2833 3.981375 AGGAAGAAGAAACCTACAAGGGT 59.019 43.478 0.00 0.00 36.34 4.34
1865 2834 4.072839 GGAAGAAGAAACCTACAAGGGTG 58.927 47.826 0.00 0.00 30.80 4.61
1868 2837 3.117663 AGAAGAAACCTACAAGGGTGCAA 60.118 43.478 0.00 0.00 30.80 4.08
1869 2838 3.306472 AGAAACCTACAAGGGTGCAAA 57.694 42.857 0.00 0.00 30.80 3.68
1870 2839 3.222603 AGAAACCTACAAGGGTGCAAAG 58.777 45.455 0.00 0.00 30.80 2.77
1871 2840 1.328279 AACCTACAAGGGTGCAAAGC 58.672 50.000 0.00 0.00 40.58 3.51
1872 2841 0.184933 ACCTACAAGGGTGCAAAGCA 59.815 50.000 0.00 0.00 40.58 3.91
1873 2842 1.327303 CCTACAAGGGTGCAAAGCAA 58.673 50.000 0.00 0.00 41.47 3.91
1874 2843 1.895131 CCTACAAGGGTGCAAAGCAAT 59.105 47.619 0.00 0.00 41.47 3.56
1875 2844 2.353011 CCTACAAGGGTGCAAAGCAATG 60.353 50.000 0.00 0.00 41.47 2.82
1876 2845 1.122227 ACAAGGGTGCAAAGCAATGT 58.878 45.000 0.00 0.00 41.47 2.71
1877 2846 1.485895 ACAAGGGTGCAAAGCAATGTT 59.514 42.857 0.00 0.00 41.47 2.71
1878 2847 1.868498 CAAGGGTGCAAAGCAATGTTG 59.132 47.619 0.00 0.00 41.47 3.33
1879 2848 0.393820 AGGGTGCAAAGCAATGTTGG 59.606 50.000 0.00 0.00 41.47 3.77
1880 2849 0.106521 GGGTGCAAAGCAATGTTGGT 59.893 50.000 0.00 0.00 41.47 3.67
1882 2851 1.598601 GGTGCAAAGCAATGTTGGTTG 59.401 47.619 10.53 6.79 46.98 3.77
1883 2852 1.598601 GTGCAAAGCAATGTTGGTTGG 59.401 47.619 10.53 8.97 46.98 3.77
1884 2853 1.209019 TGCAAAGCAATGTTGGTTGGT 59.791 42.857 10.53 0.00 46.98 3.67
1885 2854 2.287769 GCAAAGCAATGTTGGTTGGTT 58.712 42.857 10.53 0.00 46.98 3.67
1886 2855 2.031930 GCAAAGCAATGTTGGTTGGTTG 59.968 45.455 10.53 7.09 46.98 3.77
1887 2856 3.529533 CAAAGCAATGTTGGTTGGTTGA 58.470 40.909 10.53 0.00 46.98 3.18
1888 2857 3.902881 AAGCAATGTTGGTTGGTTGAA 57.097 38.095 9.16 0.00 46.03 2.69
1889 2858 3.177997 AGCAATGTTGGTTGGTTGAAC 57.822 42.857 0.00 0.00 36.49 3.18
1903 2872 1.068588 GTTGAACCCAGAAGCCAAACC 59.931 52.381 0.00 0.00 0.00 3.27
1911 2880 2.310538 CAGAAGCCAAACCTGGAAACT 58.689 47.619 0.00 0.00 46.92 2.66
1918 2887 2.821969 CCAAACCTGGAAACTGATGAGG 59.178 50.000 0.00 0.00 46.92 3.86
1919 2888 3.498481 CCAAACCTGGAAACTGATGAGGA 60.498 47.826 0.00 0.00 46.92 3.71
1920 2889 3.425162 AACCTGGAAACTGATGAGGAC 57.575 47.619 0.00 0.00 0.00 3.85
1921 2890 2.338809 ACCTGGAAACTGATGAGGACA 58.661 47.619 0.00 0.00 0.00 4.02
1922 2891 2.304180 ACCTGGAAACTGATGAGGACAG 59.696 50.000 0.00 0.00 40.68 3.51
1923 2892 2.568956 CCTGGAAACTGATGAGGACAGA 59.431 50.000 0.00 0.00 38.55 3.41
1924 2893 3.008375 CCTGGAAACTGATGAGGACAGAA 59.992 47.826 0.00 0.00 38.55 3.02
1925 2894 4.252073 CTGGAAACTGATGAGGACAGAAG 58.748 47.826 0.00 0.00 38.55 2.85
1926 2895 3.006247 GGAAACTGATGAGGACAGAAGC 58.994 50.000 0.00 0.00 38.55 3.86
1927 2896 2.376808 AACTGATGAGGACAGAAGCG 57.623 50.000 0.00 0.00 38.55 4.68
1928 2897 1.550327 ACTGATGAGGACAGAAGCGA 58.450 50.000 0.00 0.00 38.55 4.93
1929 2898 2.106566 ACTGATGAGGACAGAAGCGAT 58.893 47.619 0.00 0.00 38.55 4.58
1930 2899 2.499289 ACTGATGAGGACAGAAGCGATT 59.501 45.455 0.00 0.00 38.55 3.34
1931 2900 3.122297 CTGATGAGGACAGAAGCGATTC 58.878 50.000 4.98 4.98 37.54 2.52
1932 2901 2.762887 TGATGAGGACAGAAGCGATTCT 59.237 45.455 10.76 10.76 0.00 2.40
1973 2958 4.128643 CAAAGCAATGTTGGTTGGTTGAT 58.871 39.130 10.53 0.00 46.98 2.57
2002 2987 6.431234 AGAAGCCAAGTTATGTTCCACTAAAG 59.569 38.462 0.00 0.00 0.00 1.85
2060 3063 0.179000 GGGTGTGATCTGCCCTGTAG 59.821 60.000 11.06 0.00 39.31 2.74
2092 3306 5.126061 GGTACCAATGAAGAAGATTGCACAT 59.874 40.000 7.15 0.00 30.66 3.21
2136 3350 3.088532 TCAGAAGCCCGTGCATTAAAAT 58.911 40.909 0.00 0.00 41.13 1.82
2154 3370 3.575965 AATTGGCATTCTTGGTTCGTC 57.424 42.857 0.00 0.00 0.00 4.20
2339 3556 7.834181 AGTATTTAACCAGGCTACACAATCAAT 59.166 33.333 0.00 0.00 0.00 2.57
2354 3571 7.370383 ACACAATCAATGAGGTTACAACAATC 58.630 34.615 0.00 0.00 0.00 2.67
2360 3577 7.708051 TCAATGAGGTTACAACAATCGAAAAA 58.292 30.769 0.00 0.00 0.00 1.94
2415 3634 4.262036 GGGCCAAGTGCTATTAAAATAGGC 60.262 45.833 4.39 0.00 39.00 3.93
2416 3635 4.584743 GGCCAAGTGCTATTAAAATAGGCT 59.415 41.667 0.00 0.00 39.00 4.58
2417 3636 5.507985 GGCCAAGTGCTATTAAAATAGGCTG 60.508 44.000 0.00 0.98 39.00 4.85
2418 3637 5.507985 GCCAAGTGCTATTAAAATAGGCTGG 60.508 44.000 10.85 8.28 39.00 4.85
2419 3638 5.010012 CCAAGTGCTATTAAAATAGGCTGGG 59.990 44.000 10.85 0.00 39.00 4.45
2420 3639 4.729868 AGTGCTATTAAAATAGGCTGGGG 58.270 43.478 10.85 0.00 39.00 4.96
2421 3640 4.415512 AGTGCTATTAAAATAGGCTGGGGA 59.584 41.667 10.85 0.00 39.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 113 0.955428 TGATGCCGCCTTCTGTGAAC 60.955 55.000 0.00 0.00 0.00 3.18
156 161 0.453282 CGTGCTCGCAAGTGGAAATG 60.453 55.000 0.00 0.00 39.48 2.32
183 195 1.067283 CGGGTATAGCTGGAGATGCAG 60.067 57.143 0.00 0.00 0.00 4.41
199 211 1.377202 CAACTGCATGCTACCGGGT 60.377 57.895 20.33 4.46 0.00 5.28
210 222 2.904866 GGCCAACCGTCAACTGCA 60.905 61.111 0.00 0.00 0.00 4.41
270 1001 6.961554 CAGTTCGAGTTAATTAATTGCACTCC 59.038 38.462 23.62 15.76 32.22 3.85
271 1002 7.519002 ACAGTTCGAGTTAATTAATTGCACTC 58.481 34.615 21.62 21.62 32.40 3.51
272 1003 7.387948 AGACAGTTCGAGTTAATTAATTGCACT 59.612 33.333 11.05 11.85 0.00 4.40
273 1004 7.519002 AGACAGTTCGAGTTAATTAATTGCAC 58.481 34.615 11.05 7.47 0.00 4.57
274 1005 7.667043 AGACAGTTCGAGTTAATTAATTGCA 57.333 32.000 11.05 0.00 0.00 4.08
320 1176 8.893727 GCACAATCACTATACAAGGATTTACTT 58.106 33.333 0.00 0.00 0.00 2.24
321 1177 8.046708 TGCACAATCACTATACAAGGATTTACT 58.953 33.333 0.00 0.00 0.00 2.24
322 1178 8.208718 TGCACAATCACTATACAAGGATTTAC 57.791 34.615 0.00 0.00 0.00 2.01
323 1179 8.800370 TTGCACAATCACTATACAAGGATTTA 57.200 30.769 0.00 0.00 0.00 1.40
324 1180 7.611467 TCTTGCACAATCACTATACAAGGATTT 59.389 33.333 0.00 0.00 35.05 2.17
325 1181 7.112122 TCTTGCACAATCACTATACAAGGATT 58.888 34.615 0.00 0.00 35.05 3.01
326 1182 6.653020 TCTTGCACAATCACTATACAAGGAT 58.347 36.000 0.00 0.00 35.05 3.24
327 1183 6.048732 TCTTGCACAATCACTATACAAGGA 57.951 37.500 0.00 0.00 35.05 3.36
328 1184 6.932356 ATCTTGCACAATCACTATACAAGG 57.068 37.500 0.00 0.00 35.05 3.61
329 1185 7.568315 CGCTATCTTGCACAATCACTATACAAG 60.568 40.741 0.00 0.00 35.51 3.16
330 1186 6.200854 CGCTATCTTGCACAATCACTATACAA 59.799 38.462 0.00 0.00 0.00 2.41
411 1267 3.712881 GTTGGTCGCGTGCAGGTC 61.713 66.667 5.77 0.00 0.00 3.85
529 1385 2.581354 GGACAGATGACAGCGCCT 59.419 61.111 2.29 0.00 0.00 5.52
749 1636 4.241555 ATCTCGCATGGACGGGGC 62.242 66.667 0.00 0.00 33.20 5.80
750 1637 2.029666 GATCTCGCATGGACGGGG 59.970 66.667 0.00 0.00 33.20 5.73
751 1638 2.029666 GGATCTCGCATGGACGGG 59.970 66.667 0.00 0.00 33.83 5.28
752 1639 2.029666 GGGATCTCGCATGGACGG 59.970 66.667 0.00 0.00 0.00 4.79
753 1640 2.355126 CGGGATCTCGCATGGACG 60.355 66.667 0.00 0.00 0.00 4.79
869 1758 3.660111 AAAAGCCACAGCCGACGC 61.660 61.111 0.00 0.00 41.25 5.19
927 1816 2.683362 TGAGAGGCGCGGATATATAGTG 59.317 50.000 8.83 0.00 0.00 2.74
1046 1956 1.080329 AGCCTTCTTCTTCCTCCTCCT 59.920 52.381 0.00 0.00 0.00 3.69
1070 1980 9.872721 CGTGTGGAACTATAGAGTATAGATAGA 57.127 37.037 6.78 0.00 40.43 1.98
1071 1981 8.605746 GCGTGTGGAACTATAGAGTATAGATAG 58.394 40.741 6.78 0.00 40.43 2.08
1072 1982 8.098912 TGCGTGTGGAACTATAGAGTATAGATA 58.901 37.037 6.78 0.00 40.43 1.98
1073 1983 6.940867 TGCGTGTGGAACTATAGAGTATAGAT 59.059 38.462 6.78 0.00 40.43 1.98
1078 1988 4.037565 CCATGCGTGTGGAACTATAGAGTA 59.962 45.833 6.78 0.00 42.02 2.59
1082 1992 2.483876 CCCATGCGTGTGGAACTATAG 58.516 52.381 4.96 0.00 42.02 1.31
1083 1993 1.140052 CCCCATGCGTGTGGAACTATA 59.860 52.381 0.28 0.00 42.02 1.31
1084 1994 0.107214 CCCCATGCGTGTGGAACTAT 60.107 55.000 0.28 0.00 42.02 2.12
1085 1995 1.195442 TCCCCATGCGTGTGGAACTA 61.195 55.000 7.77 0.00 42.02 2.24
1086 1996 2.034066 CCCCATGCGTGTGGAACT 59.966 61.111 0.28 0.00 42.02 3.01
1087 1997 1.602323 TTCCCCATGCGTGTGGAAC 60.602 57.895 17.77 0.00 37.02 3.62
1091 2001 2.981560 GCAGTTCCCCATGCGTGTG 61.982 63.158 4.96 0.00 31.87 3.82
1189 2102 2.762043 GCTCCTTCCTCCGCTCCT 60.762 66.667 0.00 0.00 0.00 3.69
1195 2108 3.672295 CTGGCGTGCTCCTTCCTCC 62.672 68.421 0.00 0.00 0.00 4.30
1210 2123 2.187946 GGATGGTCACCTCGCTGG 59.812 66.667 0.00 0.00 42.93 4.85
1391 2316 4.247380 GCCTCCGGGATGCTCTGG 62.247 72.222 15.98 5.30 33.58 3.86
1481 2406 3.058639 CGAAGAAGCAACCAAGAAAGAGG 60.059 47.826 0.00 0.00 0.00 3.69
1522 2462 0.897863 ATAGCACAAAAAGGCCGCCA 60.898 50.000 13.15 0.00 0.00 5.69
1523 2463 0.246360 AATAGCACAAAAAGGCCGCC 59.754 50.000 0.00 0.00 0.00 6.13
1538 2478 5.414454 TCGTTGGATCCAAACCAAAGAATAG 59.586 40.000 28.64 8.39 46.54 1.73
1575 2518 4.811557 GGTCATCTATTTTGGAACGGAGAG 59.188 45.833 0.00 0.00 0.00 3.20
1576 2519 4.383770 GGGTCATCTATTTTGGAACGGAGA 60.384 45.833 0.00 0.00 0.00 3.71
1577 2520 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1578 2521 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1579 2522 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1580 2523 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1581 2524 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1582 2525 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
1583 2526 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
1584 2527 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
1589 2532 9.448587 ACCTTAGTATAAAGTTGGGTCATCTAT 57.551 33.333 0.00 0.00 0.00 1.98
1590 2533 8.849543 ACCTTAGTATAAAGTTGGGTCATCTA 57.150 34.615 0.00 0.00 0.00 1.98
1591 2534 7.402071 TGACCTTAGTATAAAGTTGGGTCATCT 59.598 37.037 7.30 0.00 44.37 2.90
1592 2535 7.562135 TGACCTTAGTATAAAGTTGGGTCATC 58.438 38.462 7.30 0.00 44.37 2.92
1593 2536 7.182206 ACTGACCTTAGTATAAAGTTGGGTCAT 59.818 37.037 11.12 1.47 46.78 3.06
1594 2537 6.499350 ACTGACCTTAGTATAAAGTTGGGTCA 59.501 38.462 10.40 10.40 46.17 4.02
1595 2538 6.944096 ACTGACCTTAGTATAAAGTTGGGTC 58.056 40.000 0.00 0.00 41.39 4.46
1596 2539 6.947376 ACTGACCTTAGTATAAAGTTGGGT 57.053 37.500 0.00 0.00 0.00 4.51
1597 2540 7.844009 TGTACTGACCTTAGTATAAAGTTGGG 58.156 38.462 0.00 0.00 35.75 4.12
1598 2541 9.715121 TTTGTACTGACCTTAGTATAAAGTTGG 57.285 33.333 0.00 0.00 38.49 3.77
1603 2546 9.715121 CCAACTTTGTACTGACCTTAGTATAAA 57.285 33.333 0.00 0.00 39.98 1.40
1604 2547 8.316214 CCCAACTTTGTACTGACCTTAGTATAA 58.684 37.037 0.00 0.00 35.75 0.98
1605 2548 7.455638 ACCCAACTTTGTACTGACCTTAGTATA 59.544 37.037 0.00 0.00 35.75 1.47
1606 2549 6.271624 ACCCAACTTTGTACTGACCTTAGTAT 59.728 38.462 0.00 0.00 35.75 2.12
1607 2550 5.603813 ACCCAACTTTGTACTGACCTTAGTA 59.396 40.000 0.00 0.00 32.19 1.82
1608 2551 4.411212 ACCCAACTTTGTACTGACCTTAGT 59.589 41.667 0.00 0.00 34.71 2.24
1609 2552 4.969484 ACCCAACTTTGTACTGACCTTAG 58.031 43.478 0.00 0.00 0.00 2.18
1610 2553 4.409574 TGACCCAACTTTGTACTGACCTTA 59.590 41.667 0.00 0.00 0.00 2.69
1611 2554 3.201266 TGACCCAACTTTGTACTGACCTT 59.799 43.478 0.00 0.00 0.00 3.50
1612 2555 2.775384 TGACCCAACTTTGTACTGACCT 59.225 45.455 0.00 0.00 0.00 3.85
1613 2556 3.202829 TGACCCAACTTTGTACTGACC 57.797 47.619 0.00 0.00 0.00 4.02
1614 2557 4.642429 AGATGACCCAACTTTGTACTGAC 58.358 43.478 0.00 0.00 0.00 3.51
1615 2558 4.974645 AGATGACCCAACTTTGTACTGA 57.025 40.909 0.00 0.00 0.00 3.41
1616 2559 7.687941 AAATAGATGACCCAACTTTGTACTG 57.312 36.000 0.00 0.00 0.00 2.74
1617 2560 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
1618 2561 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
1619 2562 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
1620 2563 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
1621 2564 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
1622 2565 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1623 2566 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1624 2567 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1625 2568 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1626 2569 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1627 2570 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1628 2571 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1629 2572 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1630 2573 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1631 2574 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1632 2575 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1633 2576 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1634 2577 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1635 2578 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1636 2579 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
1637 2580 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
1638 2581 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
1639 2582 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1640 2583 2.622452 CCTACTACTCCCTCCGTTCCAA 60.622 54.545 0.00 0.00 0.00 3.53
1641 2584 1.064166 CCTACTACTCCCTCCGTTCCA 60.064 57.143 0.00 0.00 0.00 3.53
1642 2585 1.689984 CCTACTACTCCCTCCGTTCC 58.310 60.000 0.00 0.00 0.00 3.62
1643 2586 1.213926 TCCCTACTACTCCCTCCGTTC 59.786 57.143 0.00 0.00 0.00 3.95
1644 2587 1.302907 TCCCTACTACTCCCTCCGTT 58.697 55.000 0.00 0.00 0.00 4.44
1645 2588 1.302907 TTCCCTACTACTCCCTCCGT 58.697 55.000 0.00 0.00 0.00 4.69
1646 2589 2.308690 CTTTCCCTACTACTCCCTCCG 58.691 57.143 0.00 0.00 0.00 4.63
1647 2590 3.032459 CACTTTCCCTACTACTCCCTCC 58.968 54.545 0.00 0.00 0.00 4.30
1648 2591 3.032459 CCACTTTCCCTACTACTCCCTC 58.968 54.545 0.00 0.00 0.00 4.30
1649 2592 2.386113 ACCACTTTCCCTACTACTCCCT 59.614 50.000 0.00 0.00 0.00 4.20
1650 2593 2.500504 CACCACTTTCCCTACTACTCCC 59.499 54.545 0.00 0.00 0.00 4.30
1651 2594 3.438183 TCACCACTTTCCCTACTACTCC 58.562 50.000 0.00 0.00 0.00 3.85
1652 2595 4.466726 ACATCACCACTTTCCCTACTACTC 59.533 45.833 0.00 0.00 0.00 2.59
1653 2596 4.426704 ACATCACCACTTTCCCTACTACT 58.573 43.478 0.00 0.00 0.00 2.57
1654 2597 4.820894 ACATCACCACTTTCCCTACTAC 57.179 45.455 0.00 0.00 0.00 2.73
1655 2598 6.938698 TTTACATCACCACTTTCCCTACTA 57.061 37.500 0.00 0.00 0.00 1.82
1656 2599 5.836024 TTTACATCACCACTTTCCCTACT 57.164 39.130 0.00 0.00 0.00 2.57
1697 2659 2.552315 CACAAAAAGCCGTATGGACAGT 59.448 45.455 4.73 0.00 37.49 3.55
1729 2691 6.098679 TCAACTGAGAATGTTTGGTTTGTTG 58.901 36.000 0.00 0.00 34.31 3.33
1730 2692 6.279513 TCAACTGAGAATGTTTGGTTTGTT 57.720 33.333 0.00 0.00 0.00 2.83
1731 2693 5.913137 TCAACTGAGAATGTTTGGTTTGT 57.087 34.783 0.00 0.00 0.00 2.83
1732 2694 6.742109 AGATCAACTGAGAATGTTTGGTTTG 58.258 36.000 0.00 0.00 0.00 2.93
1733 2695 6.966534 AGATCAACTGAGAATGTTTGGTTT 57.033 33.333 0.00 0.00 0.00 3.27
1773 2741 4.869297 TCAAGTGAAAATGCTTGGTTTGTG 59.131 37.500 0.00 0.00 41.56 3.33
1864 2833 1.209019 ACCAACCAACATTGCTTTGCA 59.791 42.857 0.00 0.00 36.47 4.08
1865 2834 1.952193 ACCAACCAACATTGCTTTGC 58.048 45.000 0.00 0.00 0.00 3.68
1868 2837 3.530535 GTTCAACCAACCAACATTGCTT 58.469 40.909 0.00 0.00 0.00 3.91
1869 2838 3.177997 GTTCAACCAACCAACATTGCT 57.822 42.857 0.00 0.00 0.00 3.91
1879 2848 0.673985 GGCTTCTGGGTTCAACCAAC 59.326 55.000 9.35 0.00 41.02 3.77
1880 2849 0.260230 TGGCTTCTGGGTTCAACCAA 59.740 50.000 9.35 0.00 41.02 3.67
1881 2850 0.260230 TTGGCTTCTGGGTTCAACCA 59.740 50.000 9.35 0.00 41.02 3.67
1882 2851 1.068588 GTTTGGCTTCTGGGTTCAACC 59.931 52.381 0.00 0.00 37.60 3.77
1883 2852 1.068588 GGTTTGGCTTCTGGGTTCAAC 59.931 52.381 0.00 0.00 0.00 3.18
1884 2853 1.063266 AGGTTTGGCTTCTGGGTTCAA 60.063 47.619 0.00 0.00 0.00 2.69
1885 2854 0.555769 AGGTTTGGCTTCTGGGTTCA 59.444 50.000 0.00 0.00 0.00 3.18
1886 2855 0.961753 CAGGTTTGGCTTCTGGGTTC 59.038 55.000 0.00 0.00 0.00 3.62
1887 2856 0.469892 CCAGGTTTGGCTTCTGGGTT 60.470 55.000 0.00 0.00 43.09 4.11
1888 2857 1.153756 CCAGGTTTGGCTTCTGGGT 59.846 57.895 0.00 0.00 43.09 4.51
1889 2858 0.178964 TTCCAGGTTTGGCTTCTGGG 60.179 55.000 8.50 0.00 45.89 4.45
1890 2859 1.341209 GTTTCCAGGTTTGGCTTCTGG 59.659 52.381 0.00 0.00 46.91 3.86
1891 2860 2.035066 CAGTTTCCAGGTTTGGCTTCTG 59.965 50.000 0.00 0.00 44.63 3.02
1892 2861 2.091885 TCAGTTTCCAGGTTTGGCTTCT 60.092 45.455 0.00 0.00 44.63 2.85
1893 2862 2.306847 TCAGTTTCCAGGTTTGGCTTC 58.693 47.619 0.00 0.00 44.63 3.86
1894 2863 2.452600 TCAGTTTCCAGGTTTGGCTT 57.547 45.000 0.00 0.00 44.63 4.35
1903 2872 3.969287 TCTGTCCTCATCAGTTTCCAG 57.031 47.619 0.00 0.00 34.86 3.86
1911 2880 2.762887 AGAATCGCTTCTGTCCTCATCA 59.237 45.455 0.00 0.00 40.28 3.07
1921 2890 1.765314 AGGGCATACAGAATCGCTTCT 59.235 47.619 0.00 0.00 42.59 2.85
1922 2891 1.869767 CAGGGCATACAGAATCGCTTC 59.130 52.381 0.00 0.00 0.00 3.86
1923 2892 1.959042 CAGGGCATACAGAATCGCTT 58.041 50.000 0.00 0.00 0.00 4.68
1924 2893 0.533755 GCAGGGCATACAGAATCGCT 60.534 55.000 0.00 0.00 0.00 4.93
1925 2894 0.815213 TGCAGGGCATACAGAATCGC 60.815 55.000 0.00 0.00 31.71 4.58
1926 2895 1.600957 CTTGCAGGGCATACAGAATCG 59.399 52.381 0.00 0.00 38.76 3.34
1927 2896 1.952296 CCTTGCAGGGCATACAGAATC 59.048 52.381 0.13 0.00 38.76 2.52
1928 2897 2.062971 CCTTGCAGGGCATACAGAAT 57.937 50.000 0.13 0.00 38.76 2.40
1929 2898 3.575506 CCTTGCAGGGCATACAGAA 57.424 52.632 0.13 0.00 38.76 3.02
1973 2958 3.561313 GGAACATAACTTGGCTTCTGGGA 60.561 47.826 0.00 0.00 0.00 4.37
2029 3032 5.300034 GCAGATCACACCCAATGATTCATAA 59.700 40.000 0.00 0.00 36.92 1.90
2030 3033 4.823442 GCAGATCACACCCAATGATTCATA 59.177 41.667 0.00 0.00 36.92 2.15
2031 3034 3.635373 GCAGATCACACCCAATGATTCAT 59.365 43.478 0.00 0.00 36.92 2.57
2032 3035 3.018856 GCAGATCACACCCAATGATTCA 58.981 45.455 0.00 0.00 36.92 2.57
2033 3036 2.360165 GGCAGATCACACCCAATGATTC 59.640 50.000 0.00 0.00 36.92 2.52
2034 3037 2.381911 GGCAGATCACACCCAATGATT 58.618 47.619 0.00 0.00 36.92 2.57
2060 3063 2.232941 TCTTCATTGGTACCCACGACTC 59.767 50.000 10.07 0.00 30.78 3.36
2092 3306 4.331968 ACGTGGAGGAAAGAAAATGCATA 58.668 39.130 0.00 0.00 0.00 3.14
2136 3350 1.243902 GGACGAACCAAGAATGCCAA 58.756 50.000 0.00 0.00 38.79 4.52
2322 3539 2.947652 CCTCATTGATTGTGTAGCCTGG 59.052 50.000 0.00 0.00 0.00 4.45
2360 3577 8.985315 TCCATATCTGCTCTATCATTTTTGTT 57.015 30.769 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.