Multiple sequence alignment - TraesCS3A01G326700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G326700 chr3A 100.000 8750 0 0 1 8750 571926571 571917822 0.000000e+00 16159.0
1 TraesCS3A01G326700 chr3D 94.286 7351 290 56 556 7835 433443111 433435820 0.000000e+00 11129.0
2 TraesCS3A01G326700 chr3D 92.090 885 60 3 7876 8750 433433079 433432195 0.000000e+00 1238.0
3 TraesCS3A01G326700 chr3D 92.553 94 7 0 4 97 433444153 433444060 1.530000e-27 135.0
4 TraesCS3A01G326700 chr3B 94.730 3245 103 26 4553 7743 566280990 566277760 0.000000e+00 4983.0
5 TraesCS3A01G326700 chr3B 94.520 2737 106 19 1840 4555 566283864 566281151 0.000000e+00 4183.0
6 TraesCS3A01G326700 chr3B 90.226 1105 73 21 429 1511 566286268 566285177 0.000000e+00 1410.0
7 TraesCS3A01G326700 chr3B 89.522 878 77 7 7880 8745 566195697 566194823 0.000000e+00 1098.0
8 TraesCS3A01G326700 chr3B 93.333 105 7 0 1559 1663 566284074 566283970 1.180000e-33 156.0
9 TraesCS3A01G326700 chr2A 78.822 628 129 3 8122 8747 262584342 262583717 3.780000e-113 420.0
10 TraesCS3A01G326700 chr7B 91.118 304 25 2 123 425 704665665 704665363 2.270000e-110 411.0
11 TraesCS3A01G326700 chr7B 91.118 304 25 2 123 425 728122710 728122408 2.270000e-110 411.0
12 TraesCS3A01G326700 chr7B 75.192 520 105 14 8028 8531 589161419 589161930 3.180000e-54 224.0
13 TraesCS3A01G326700 chr5A 90.850 306 25 3 123 426 524008379 524008683 2.940000e-109 407.0
14 TraesCS3A01G326700 chr5A 80.374 535 99 6 8215 8744 329255211 329254678 1.370000e-107 401.0
15 TraesCS3A01G326700 chr4A 90.820 305 26 2 123 426 714825916 714826219 2.940000e-109 407.0
16 TraesCS3A01G326700 chr7D 90.492 305 27 2 123 426 82851134 82851437 1.370000e-107 401.0
17 TraesCS3A01G326700 chr7D 75.858 816 167 21 7950 8747 170220464 170221267 1.070000e-103 388.0
18 TraesCS3A01G326700 chr7D 80.769 104 12 7 526 623 390082127 390082228 3.390000e-09 75.0
19 TraesCS3A01G326700 chr7D 100.000 33 0 0 591 623 46788955 46788923 2.640000e-05 62.1
20 TraesCS3A01G326700 chr7D 88.000 50 4 2 584 632 2261073 2261025 3.410000e-04 58.4
21 TraesCS3A01G326700 chr6B 90.523 306 25 4 122 425 675396235 675395932 1.370000e-107 401.0
22 TraesCS3A01G326700 chr5B 90.492 305 27 2 122 425 702896597 702896900 1.370000e-107 401.0
23 TraesCS3A01G326700 chr5B 89.457 313 31 2 123 434 8364308 8363997 2.290000e-105 394.0
24 TraesCS3A01G326700 chr5B 75.680 662 140 18 8098 8748 476815247 476815898 2.370000e-80 311.0
25 TraesCS3A01G326700 chr6A 90.000 310 27 3 120 428 36495822 36496128 1.770000e-106 398.0
26 TraesCS3A01G326700 chr6A 75.709 811 175 16 7948 8747 98606418 98607217 3.830000e-103 387.0
27 TraesCS3A01G326700 chr2B 79.204 553 83 21 8222 8747 265225232 265224685 1.080000e-93 355.0
28 TraesCS3A01G326700 chr6D 82.154 325 53 4 8423 8742 82093972 82094296 3.110000e-69 274.0
29 TraesCS3A01G326700 chrUn 88.000 50 4 2 584 632 89008124 89008172 3.410000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G326700 chr3A 571917822 571926571 8749 True 16159.000000 16159 100.000000 1 8750 1 chr3A.!!$R1 8749
1 TraesCS3A01G326700 chr3D 433432195 433444153 11958 True 4167.333333 11129 92.976333 4 8750 3 chr3D.!!$R1 8746
2 TraesCS3A01G326700 chr3B 566277760 566286268 8508 True 2683.000000 4983 93.202250 429 7743 4 chr3B.!!$R2 7314
3 TraesCS3A01G326700 chr3B 566194823 566195697 874 True 1098.000000 1098 89.522000 7880 8745 1 chr3B.!!$R1 865
4 TraesCS3A01G326700 chr2A 262583717 262584342 625 True 420.000000 420 78.822000 8122 8747 1 chr2A.!!$R1 625
5 TraesCS3A01G326700 chr7B 589161419 589161930 511 False 224.000000 224 75.192000 8028 8531 1 chr7B.!!$F1 503
6 TraesCS3A01G326700 chr5A 329254678 329255211 533 True 401.000000 401 80.374000 8215 8744 1 chr5A.!!$R1 529
7 TraesCS3A01G326700 chr7D 170220464 170221267 803 False 388.000000 388 75.858000 7950 8747 1 chr7D.!!$F2 797
8 TraesCS3A01G326700 chr5B 476815247 476815898 651 False 311.000000 311 75.680000 8098 8748 1 chr5B.!!$F1 650
9 TraesCS3A01G326700 chr6A 98606418 98607217 799 False 387.000000 387 75.709000 7948 8747 1 chr6A.!!$F2 799
10 TraesCS3A01G326700 chr2B 265224685 265225232 547 True 355.000000 355 79.204000 8222 8747 1 chr2B.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 283 0.028902 CGTATGCACCTCATCGTCGA 59.971 55.0 0.00 0.00 36.63 4.20 F
364 365 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.00 0.00 0.00 2.69 F
1547 2058 0.106167 ATCAAGATCGGGAGACGGGA 60.106 55.0 0.00 0.00 44.82 5.14 F
2562 4153 0.108019 GGGGAACTCGTCAGTTGGTT 59.892 55.0 0.00 0.00 43.37 3.67 F
3142 4738 0.180406 ACGACTGTTCCAAAGGCTGT 59.820 50.0 0.00 0.00 0.00 4.40 F
3502 5102 0.318614 GGTCGTGGGTTGCACAATTG 60.319 55.0 3.24 3.24 0.00 2.32 F
4057 5662 0.395862 TTGAGGAACGGCCAAAACCA 60.396 50.0 2.24 0.00 40.02 3.67 F
4893 6682 0.683973 ACAGAGTTGTGCAGGGAGAG 59.316 55.0 0.00 0.00 35.83 3.20 F
5227 7016 2.352960 GGCTTATGTTTTCAGAGGCTCG 59.647 50.0 9.22 4.43 42.42 5.03 F
6481 8283 0.179268 CGTACCTTGTTTACGCGCAC 60.179 55.0 5.73 0.41 36.24 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 3621 0.106519 AAGGAATTCAGATGCGGGGG 60.107 55.000 7.93 0.00 0.00 5.40 R
2092 3683 2.686835 GAGGAGCCTGAGCCTGGT 60.687 66.667 0.00 0.00 41.25 4.00 R
2739 4331 1.003355 ATCACGCAAGGGGACACAG 60.003 57.895 0.00 0.00 44.90 3.66 R
3478 5077 1.530323 GTGCAACCCACGACCTTTAT 58.470 50.000 0.00 0.00 34.22 1.40 R
4646 6417 3.517901 ACCTATAGCCAGTAACAGCAACA 59.482 43.478 0.00 0.00 0.00 3.33 R
5227 7016 3.243771 ACCGTATGCACCATCTAAGCTAC 60.244 47.826 0.00 0.00 0.00 3.58 R
5705 7495 3.815401 GTGGTCACACAAGAGCTTATTGT 59.185 43.478 11.35 11.35 46.90 2.71 R
6309 8108 0.104304 GCCCTCAGTATGGTACCACG 59.896 60.000 19.09 6.43 36.16 4.94 R
7137 8961 1.217244 GAGCGTACGGTTCCATGGT 59.783 57.895 22.26 0.00 0.00 3.55 R
7865 9771 0.106708 GGCATCGCAGGTCAATAGGA 59.893 55.000 0.00 0.00 0.00 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.543590 TTTCAGAGAAAGGAGGTAGCTG 57.456 45.455 0.00 0.00 0.00 4.24
97 98 9.415544 CGTTTGTAATACATATACTAAGGGACC 57.584 37.037 0.00 0.00 0.00 4.46
109 110 5.830000 ACTAAGGGACCAAATAAATTCGC 57.170 39.130 0.00 0.00 0.00 4.70
110 111 5.258051 ACTAAGGGACCAAATAAATTCGCA 58.742 37.500 0.00 0.00 0.00 5.10
111 112 5.712917 ACTAAGGGACCAAATAAATTCGCAA 59.287 36.000 0.00 0.00 0.00 4.85
146 147 6.993786 TTTTTGAACATCAGTACAGACACA 57.006 33.333 0.00 0.00 0.00 3.72
147 148 6.993786 TTTTGAACATCAGTACAGACACAA 57.006 33.333 0.00 0.00 0.00 3.33
152 153 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
153 154 1.068588 TCAGTACAGACACAAGCGCTT 59.931 47.619 18.98 18.98 0.00 4.68
154 155 2.295070 TCAGTACAGACACAAGCGCTTA 59.705 45.455 24.55 0.72 0.00 3.09
156 157 4.157105 TCAGTACAGACACAAGCGCTTATA 59.843 41.667 24.55 4.12 0.00 0.98
157 158 5.043903 CAGTACAGACACAAGCGCTTATAT 58.956 41.667 24.55 10.78 0.00 0.86
158 159 6.038936 TCAGTACAGACACAAGCGCTTATATA 59.961 38.462 24.55 5.89 0.00 0.86
159 160 6.142480 CAGTACAGACACAAGCGCTTATATAC 59.858 42.308 24.55 16.63 0.00 1.47
160 161 5.006153 ACAGACACAAGCGCTTATATACA 57.994 39.130 24.55 0.00 0.00 2.29
161 162 4.804139 ACAGACACAAGCGCTTATATACAC 59.196 41.667 24.55 10.53 0.00 2.90
162 163 4.209288 CAGACACAAGCGCTTATATACACC 59.791 45.833 24.55 6.86 0.00 4.16
165 166 3.059597 CACAAGCGCTTATATACACCTGC 60.060 47.826 24.55 0.00 0.00 4.85
166 167 3.130633 CAAGCGCTTATATACACCTGCA 58.869 45.455 24.55 0.00 0.00 4.41
167 168 3.685139 AGCGCTTATATACACCTGCAT 57.315 42.857 2.64 0.00 0.00 3.96
168 169 4.801330 AGCGCTTATATACACCTGCATA 57.199 40.909 2.64 0.00 0.00 3.14
170 171 4.021456 AGCGCTTATATACACCTGCATACA 60.021 41.667 2.64 0.00 0.00 2.29
171 172 4.091509 GCGCTTATATACACCTGCATACAC 59.908 45.833 0.00 0.00 0.00 2.90
173 174 5.573282 CGCTTATATACACCTGCATACACTC 59.427 44.000 0.00 0.00 0.00 3.51
174 175 6.455647 GCTTATATACACCTGCATACACTCA 58.544 40.000 0.00 0.00 0.00 3.41
177 178 0.324943 ACACCTGCATACACTCACCC 59.675 55.000 0.00 0.00 0.00 4.61
178 179 0.392998 CACCTGCATACACTCACCCC 60.393 60.000 0.00 0.00 0.00 4.95
179 180 0.547712 ACCTGCATACACTCACCCCT 60.548 55.000 0.00 0.00 0.00 4.79
180 181 1.273609 ACCTGCATACACTCACCCCTA 60.274 52.381 0.00 0.00 0.00 3.53
181 182 2.050144 CCTGCATACACTCACCCCTAT 58.950 52.381 0.00 0.00 0.00 2.57
182 183 2.224378 CCTGCATACACTCACCCCTATG 60.224 54.545 0.00 0.00 0.00 2.23
184 185 3.111484 TGCATACACTCACCCCTATGAA 58.889 45.455 0.00 0.00 0.00 2.57
185 186 3.118408 TGCATACACTCACCCCTATGAAC 60.118 47.826 0.00 0.00 0.00 3.18
186 187 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
187 188 1.640917 ACACTCACCCCTATGAACGT 58.359 50.000 0.00 0.00 0.00 3.99
188 189 2.811410 ACACTCACCCCTATGAACGTA 58.189 47.619 0.00 0.00 0.00 3.57
190 191 2.494471 CACTCACCCCTATGAACGTACA 59.506 50.000 0.00 0.00 0.00 2.90
191 192 2.494870 ACTCACCCCTATGAACGTACAC 59.505 50.000 0.00 0.00 0.00 2.90
192 193 2.494471 CTCACCCCTATGAACGTACACA 59.506 50.000 0.00 0.00 0.00 3.72
202 203 2.028484 CGTACACACGCACACCCT 59.972 61.111 0.00 0.00 42.05 4.34
203 204 1.593209 CGTACACACGCACACCCTT 60.593 57.895 0.00 0.00 42.05 3.95
204 205 1.554042 CGTACACACGCACACCCTTC 61.554 60.000 0.00 0.00 42.05 3.46
207 208 3.168528 ACACGCACACCCTTCCCT 61.169 61.111 0.00 0.00 0.00 4.20
209 210 1.198759 ACACGCACACCCTTCCCTAT 61.199 55.000 0.00 0.00 0.00 2.57
210 211 0.744414 CACGCACACCCTTCCCTATG 60.744 60.000 0.00 0.00 0.00 2.23
211 212 0.907704 ACGCACACCCTTCCCTATGA 60.908 55.000 0.00 0.00 0.00 2.15
212 213 0.179073 CGCACACCCTTCCCTATGAG 60.179 60.000 0.00 0.00 0.00 2.90
213 214 0.464554 GCACACCCTTCCCTATGAGC 60.465 60.000 0.00 0.00 0.00 4.26
214 215 0.911769 CACACCCTTCCCTATGAGCA 59.088 55.000 0.00 0.00 0.00 4.26
216 217 0.181350 CACCCTTCCCTATGAGCACC 59.819 60.000 0.00 0.00 0.00 5.01
217 218 0.044855 ACCCTTCCCTATGAGCACCT 59.955 55.000 0.00 0.00 0.00 4.00
219 220 1.141858 CCCTTCCCTATGAGCACCTTC 59.858 57.143 0.00 0.00 0.00 3.46
220 221 1.202580 CCTTCCCTATGAGCACCTTCG 60.203 57.143 0.00 0.00 0.00 3.79
221 222 1.757118 CTTCCCTATGAGCACCTTCGA 59.243 52.381 0.00 0.00 0.00 3.71
222 223 1.860641 TCCCTATGAGCACCTTCGAA 58.139 50.000 0.00 0.00 0.00 3.71
223 224 2.184533 TCCCTATGAGCACCTTCGAAA 58.815 47.619 0.00 0.00 0.00 3.46
224 225 2.168521 TCCCTATGAGCACCTTCGAAAG 59.831 50.000 0.00 0.00 0.00 2.62
225 226 2.168521 CCCTATGAGCACCTTCGAAAGA 59.831 50.000 0.00 0.00 39.20 2.52
226 227 3.190874 CCTATGAGCACCTTCGAAAGAC 58.809 50.000 0.00 0.00 41.84 3.01
229 230 1.686587 TGAGCACCTTCGAAAGACTGA 59.313 47.619 0.00 0.00 41.84 3.41
230 231 2.288457 TGAGCACCTTCGAAAGACTGAG 60.288 50.000 0.00 0.00 41.84 3.35
231 232 1.689273 AGCACCTTCGAAAGACTGAGT 59.311 47.619 0.00 0.00 41.84 3.41
232 233 2.062519 GCACCTTCGAAAGACTGAGTC 58.937 52.381 3.98 3.98 41.84 3.36
233 234 2.320367 CACCTTCGAAAGACTGAGTCG 58.680 52.381 6.99 0.00 41.84 4.18
235 236 1.341606 CTTCGAAAGACTGAGTCGGC 58.658 55.000 6.99 0.00 41.84 5.54
236 237 0.671796 TTCGAAAGACTGAGTCGGCA 59.328 50.000 6.99 0.00 41.84 5.69
238 239 2.089201 TCGAAAGACTGAGTCGGCATA 58.911 47.619 6.99 0.00 37.67 3.14
239 240 2.688446 TCGAAAGACTGAGTCGGCATAT 59.312 45.455 6.99 0.00 37.67 1.78
240 241 3.046390 CGAAAGACTGAGTCGGCATATC 58.954 50.000 6.99 0.46 37.67 1.63
242 243 4.626042 GAAAGACTGAGTCGGCATATCAT 58.374 43.478 6.99 0.00 37.67 2.45
245 246 5.028549 AGACTGAGTCGGCATATCATTTT 57.971 39.130 6.99 0.00 37.67 1.82
247 248 4.769688 ACTGAGTCGGCATATCATTTTGA 58.230 39.130 0.00 0.00 0.00 2.69
249 250 5.022282 TGAGTCGGCATATCATTTTGAGA 57.978 39.130 0.00 0.00 0.00 3.27
250 251 5.614308 TGAGTCGGCATATCATTTTGAGAT 58.386 37.500 0.00 0.00 0.00 2.75
251 252 6.057533 TGAGTCGGCATATCATTTTGAGATT 58.942 36.000 0.00 0.00 0.00 2.40
253 254 7.714813 TGAGTCGGCATATCATTTTGAGATTTA 59.285 33.333 0.00 0.00 0.00 1.40
254 255 7.865707 AGTCGGCATATCATTTTGAGATTTAC 58.134 34.615 0.00 0.00 0.00 2.01
255 256 6.792250 GTCGGCATATCATTTTGAGATTTACG 59.208 38.462 0.00 0.00 0.00 3.18
256 257 6.704050 TCGGCATATCATTTTGAGATTTACGA 59.296 34.615 0.00 0.00 29.14 3.43
257 258 7.225734 TCGGCATATCATTTTGAGATTTACGAA 59.774 33.333 0.00 0.00 28.91 3.85
260 261 9.374960 GCATATCATTTTGAGATTTACGAAGTC 57.625 33.333 0.00 0.00 43.93 3.01
263 264 7.129109 TCATTTTGAGATTTACGAAGTCACC 57.871 36.000 0.00 0.00 43.93 4.02
264 265 5.585500 TTTTGAGATTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
265 266 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
268 269 5.337554 TGAGATTTACGAAGTCACCGTATG 58.662 41.667 0.00 0.00 43.93 2.39
270 271 3.300852 TTTACGAAGTCACCGTATGCA 57.699 42.857 0.00 0.00 43.93 3.96
271 272 2.267188 TACGAAGTCACCGTATGCAC 57.733 50.000 0.00 0.00 43.93 4.57
273 274 0.108804 CGAAGTCACCGTATGCACCT 60.109 55.000 0.00 0.00 0.00 4.00
274 275 1.641577 GAAGTCACCGTATGCACCTC 58.358 55.000 0.00 0.00 0.00 3.85
279 280 0.179111 CACCGTATGCACCTCATCGT 60.179 55.000 0.00 0.00 36.63 3.73
282 283 0.028902 CGTATGCACCTCATCGTCGA 59.971 55.000 0.00 0.00 36.63 4.20
285 286 2.579787 GCACCTCATCGTCGACGG 60.580 66.667 35.05 21.47 40.29 4.79
286 287 2.102357 CACCTCATCGTCGACGGG 59.898 66.667 35.05 28.87 40.29 5.28
288 289 1.676635 ACCTCATCGTCGACGGGAA 60.677 57.895 35.05 18.80 40.29 3.97
289 290 1.226603 CCTCATCGTCGACGGGAAC 60.227 63.158 35.05 0.00 40.29 3.62
304 305 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
305 306 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
306 307 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
310 311 0.904865 TCTCCTCCCACTGAATGCGT 60.905 55.000 0.00 0.00 0.00 5.24
311 312 0.824109 CTCCTCCCACTGAATGCGTA 59.176 55.000 0.00 0.00 0.00 4.42
312 313 1.414181 CTCCTCCCACTGAATGCGTAT 59.586 52.381 0.00 0.00 0.00 3.06
314 315 1.491670 CTCCCACTGAATGCGTATCG 58.508 55.000 0.00 0.00 0.00 2.92
315 316 0.821517 TCCCACTGAATGCGTATCGT 59.178 50.000 0.00 0.00 0.00 3.73
317 318 1.470805 CCCACTGAATGCGTATCGTCA 60.471 52.381 0.00 0.00 0.00 4.35
319 320 2.479560 CCACTGAATGCGTATCGTCAGA 60.480 50.000 18.42 0.00 0.00 3.27
320 321 3.179048 CACTGAATGCGTATCGTCAGAA 58.821 45.455 18.42 0.00 0.00 3.02
321 322 3.612423 CACTGAATGCGTATCGTCAGAAA 59.388 43.478 18.42 0.00 0.00 2.52
323 324 4.504461 ACTGAATGCGTATCGTCAGAAATC 59.496 41.667 18.42 0.00 0.00 2.17
324 325 3.802139 TGAATGCGTATCGTCAGAAATCC 59.198 43.478 0.00 0.00 0.00 3.01
325 326 3.735237 ATGCGTATCGTCAGAAATCCT 57.265 42.857 0.00 0.00 0.00 3.24
326 327 2.809446 TGCGTATCGTCAGAAATCCTG 58.191 47.619 0.00 0.00 44.27 3.86
353 354 9.585099 AAATAAATTCAGAAATAAATGCGAGCA 57.415 25.926 0.00 0.00 0.00 4.26
354 355 6.875926 AAATTCAGAAATAAATGCGAGCAC 57.124 33.333 0.00 0.00 0.00 4.40
355 356 4.355543 TTCAGAAATAAATGCGAGCACC 57.644 40.909 0.00 0.00 0.00 5.01
356 357 3.342719 TCAGAAATAAATGCGAGCACCA 58.657 40.909 0.00 0.00 0.00 4.17
357 358 3.374988 TCAGAAATAAATGCGAGCACCAG 59.625 43.478 0.00 0.00 0.00 4.00
358 359 2.684881 AGAAATAAATGCGAGCACCAGG 59.315 45.455 0.00 0.00 0.00 4.45
359 360 2.418368 AATAAATGCGAGCACCAGGA 57.582 45.000 0.00 0.00 0.00 3.86
360 361 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
361 362 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
363 364 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
364 365 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
365 366 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
366 367 0.881118 GCGAGCACCAGGATTTGAAA 59.119 50.000 0.00 0.00 0.00 2.69
367 368 1.401539 GCGAGCACCAGGATTTGAAAC 60.402 52.381 0.00 0.00 0.00 2.78
369 370 1.546029 GAGCACCAGGATTTGAAACCC 59.454 52.381 0.00 0.00 0.00 4.11
370 371 1.147817 AGCACCAGGATTTGAAACCCT 59.852 47.619 0.00 0.00 0.00 4.34
371 372 1.273327 GCACCAGGATTTGAAACCCTG 59.727 52.381 11.54 11.54 45.28 4.45
387 388 0.181350 CCTGGTGGGCTGAGAATACC 59.819 60.000 0.00 0.00 0.00 2.73
388 389 0.911769 CTGGTGGGCTGAGAATACCA 59.088 55.000 0.00 0.00 38.98 3.25
392 393 1.656587 TGGGCTGAGAATACCACAGT 58.343 50.000 0.00 0.00 34.60 3.55
393 394 1.555075 TGGGCTGAGAATACCACAGTC 59.445 52.381 0.00 0.00 35.82 3.51
394 395 1.834263 GGGCTGAGAATACCACAGTCT 59.166 52.381 0.00 0.00 36.64 3.24
395 396 2.159028 GGGCTGAGAATACCACAGTCTC 60.159 54.545 0.00 0.00 46.38 3.36
396 397 2.763448 GGCTGAGAATACCACAGTCTCT 59.237 50.000 3.73 0.00 46.35 3.10
397 398 3.181480 GGCTGAGAATACCACAGTCTCTC 60.181 52.174 3.73 0.00 46.35 3.20
398 399 3.699038 GCTGAGAATACCACAGTCTCTCT 59.301 47.826 3.73 0.00 46.35 3.10
399 400 4.884744 GCTGAGAATACCACAGTCTCTCTA 59.115 45.833 3.73 0.00 46.35 2.43
400 401 5.358442 GCTGAGAATACCACAGTCTCTCTAA 59.642 44.000 3.73 0.00 46.35 2.10
401 402 6.679392 GCTGAGAATACCACAGTCTCTCTAAC 60.679 46.154 3.73 0.00 46.35 2.34
402 403 5.652891 TGAGAATACCACAGTCTCTCTAACC 59.347 44.000 3.73 0.00 46.35 2.85
403 404 5.580998 AGAATACCACAGTCTCTCTAACCA 58.419 41.667 0.00 0.00 0.00 3.67
407 408 7.973048 ATACCACAGTCTCTCTAACCATTTA 57.027 36.000 0.00 0.00 0.00 1.40
408 409 6.681729 ACCACAGTCTCTCTAACCATTTAA 57.318 37.500 0.00 0.00 0.00 1.52
409 410 6.465084 ACCACAGTCTCTCTAACCATTTAAC 58.535 40.000 0.00 0.00 0.00 2.01
410 411 6.270231 ACCACAGTCTCTCTAACCATTTAACT 59.730 38.462 0.00 0.00 0.00 2.24
412 413 7.760340 CCACAGTCTCTCTAACCATTTAACTAC 59.240 40.741 0.00 0.00 0.00 2.73
413 414 8.304596 CACAGTCTCTCTAACCATTTAACTACA 58.695 37.037 0.00 0.00 0.00 2.74
414 415 8.524487 ACAGTCTCTCTAACCATTTAACTACAG 58.476 37.037 0.00 0.00 0.00 2.74
416 417 9.482175 AGTCTCTCTAACCATTTAACTACAGAT 57.518 33.333 0.00 0.00 0.00 2.90
425 426 6.597672 ACCATTTAACTACAGATTGATTCGCA 59.402 34.615 0.00 0.00 0.00 5.10
426 427 7.120579 ACCATTTAACTACAGATTGATTCGCAA 59.879 33.333 0.00 0.00 41.53 4.85
427 428 7.641411 CCATTTAACTACAGATTGATTCGCAAG 59.359 37.037 0.00 0.00 40.42 4.01
466 878 6.317391 GCTGCTTCTATAAGAGGTTTGAACAT 59.683 38.462 0.00 0.00 34.37 2.71
484 897 0.539051 ATATATGCTCCGCTGAGGCC 59.461 55.000 7.30 0.00 39.14 5.19
518 931 0.179100 AATCGATCTCACAGTGGGCG 60.179 55.000 0.00 0.00 0.00 6.13
519 932 2.635229 ATCGATCTCACAGTGGGCGC 62.635 60.000 0.00 0.00 0.00 6.53
520 933 2.512515 GATCTCACAGTGGGCGCC 60.513 66.667 21.18 21.18 0.00 6.53
522 935 2.914777 GATCTCACAGTGGGCGCCTC 62.915 65.000 28.56 19.53 0.00 4.70
523 936 3.699894 CTCACAGTGGGCGCCTCT 61.700 66.667 28.56 21.53 0.00 3.69
524 937 2.283604 TCACAGTGGGCGCCTCTA 60.284 61.111 28.56 10.66 0.00 2.43
526 939 1.221840 CACAGTGGGCGCCTCTAAT 59.778 57.895 28.56 9.81 0.00 1.73
527 940 1.091771 CACAGTGGGCGCCTCTAATG 61.092 60.000 28.56 22.84 0.00 1.90
528 941 2.182842 CAGTGGGCGCCTCTAATGC 61.183 63.158 28.56 8.18 0.00 3.56
529 942 2.124736 GTGGGCGCCTCTAATGCA 60.125 61.111 28.56 11.19 0.00 3.96
530 943 2.182842 GTGGGCGCCTCTAATGCAG 61.183 63.158 28.56 0.00 0.00 4.41
624 1118 8.035394 ACTTGTGATACTTAATATATGGCCTCG 58.965 37.037 3.32 0.00 0.00 4.63
625 1119 6.338146 TGTGATACTTAATATATGGCCTCGC 58.662 40.000 3.32 0.00 0.00 5.03
804 1301 5.587844 AGGAGTATCATTAAGTGCAAGCTTG 59.412 40.000 22.44 22.44 36.25 4.01
854 1351 0.249699 CAGAGCCACACGGTACAACA 60.250 55.000 0.00 0.00 33.28 3.33
879 1381 2.303175 ACATTTGCGTACCAAACACCT 58.697 42.857 10.47 0.00 45.52 4.00
919 1428 1.284297 GCTGGCCATTTTTGACACGC 61.284 55.000 5.51 0.00 0.00 5.34
948 1457 3.314331 CGACACCACCAGCCTCCT 61.314 66.667 0.00 0.00 0.00 3.69
985 1494 1.852965 TCCCAGATCAAAATCTCCCCC 59.147 52.381 0.00 0.00 40.38 5.40
1044 1553 2.608016 CGTGTCTCTACTGCTGCTTTCA 60.608 50.000 0.00 0.00 0.00 2.69
1045 1554 2.992543 GTGTCTCTACTGCTGCTTTCAG 59.007 50.000 0.00 0.00 43.16 3.02
1078 1587 4.379243 CCGTGCTGCTCCTCCGTT 62.379 66.667 0.00 0.00 0.00 4.44
1336 1845 3.672295 GAGAACGAGGCCTGGCTGG 62.672 68.421 12.00 5.98 39.35 4.85
1337 1846 4.021925 GAACGAGGCCTGGCTGGT 62.022 66.667 12.00 11.05 38.35 4.00
1547 2058 0.106167 ATCAAGATCGGGAGACGGGA 60.106 55.000 0.00 0.00 44.82 5.14
1601 3179 3.951306 TGCGGATAGAAATGAAAATGCG 58.049 40.909 0.00 0.00 0.00 4.73
1617 3195 4.406173 CGTCGTGGCTGCGAGAGT 62.406 66.667 5.11 0.00 41.85 3.24
1665 3243 0.532862 AACTGCCGTGTCCAACTCAG 60.533 55.000 0.00 0.00 34.85 3.35
1696 3274 1.529438 ACGATGACACGTCGCAATTTT 59.471 42.857 12.26 0.00 43.02 1.82
1771 3352 8.814038 ATATCCTTGGAATATGCCAGAAATAC 57.186 34.615 1.69 0.00 39.52 1.89
1773 3354 4.320494 CCTTGGAATATGCCAGAAATACGC 60.320 45.833 1.69 0.00 39.52 4.42
1776 3357 2.169832 ATATGCCAGAAATACGCGCT 57.830 45.000 5.73 0.00 0.00 5.92
1789 3370 2.325509 ACGCGCTAACCATTTTTGAC 57.674 45.000 5.73 0.00 0.00 3.18
1803 3384 3.851845 TTGACCCGCCTCGTGAACG 62.852 63.158 0.00 0.00 41.45 3.95
1835 3416 4.113354 GGCTTGGTATCTACGAAACTCTG 58.887 47.826 0.00 0.00 0.00 3.35
1842 3423 6.070995 TGGTATCTACGAAACTCTGAACCAAT 60.071 38.462 0.00 0.00 30.72 3.16
1846 3427 3.815809 ACGAAACTCTGAACCAATTGGA 58.184 40.909 31.22 7.88 38.94 3.53
1892 3473 3.604400 CGAACCGTCGTCGTTGTT 58.396 55.556 0.71 0.00 42.53 2.83
1893 3474 1.197428 CGAACCGTCGTCGTTGTTG 59.803 57.895 0.71 0.00 42.53 3.33
1894 3475 1.473857 CGAACCGTCGTCGTTGTTGT 61.474 55.000 0.71 0.00 42.53 3.32
1957 3538 2.734606 CAACTCGATACGGAAGCAACAA 59.265 45.455 0.00 0.00 0.00 2.83
1958 3539 2.607187 ACTCGATACGGAAGCAACAAG 58.393 47.619 0.00 0.00 0.00 3.16
1959 3540 1.324736 CTCGATACGGAAGCAACAAGC 59.675 52.381 0.00 0.00 46.19 4.01
2006 3597 3.769739 AACCTTGCAAAATTTCCTCCC 57.230 42.857 0.00 0.00 0.00 4.30
2023 3614 2.833244 CCCCCTTTGTTTCAAGCCA 58.167 52.632 0.00 0.00 0.00 4.75
2027 3618 2.104622 CCCCTTTGTTTCAAGCCACAAT 59.895 45.455 0.00 0.00 32.96 2.71
2028 3619 3.392882 CCCTTTGTTTCAAGCCACAATC 58.607 45.455 0.00 0.00 32.96 2.67
2029 3620 3.392882 CCTTTGTTTCAAGCCACAATCC 58.607 45.455 0.00 0.00 32.96 3.01
2030 3621 3.392882 CTTTGTTTCAAGCCACAATCCC 58.607 45.455 0.00 0.00 32.96 3.85
2519 4110 1.192428 GTCGGGTGGATGGTAGAACT 58.808 55.000 0.00 0.00 0.00 3.01
2562 4153 0.108019 GGGGAACTCGTCAGTTGGTT 59.892 55.000 0.00 0.00 43.37 3.67
2564 4155 1.602377 GGGAACTCGTCAGTTGGTTTG 59.398 52.381 0.00 0.00 43.37 2.93
2576 4167 5.856455 GTCAGTTGGTTTGATTTGTTATCCG 59.144 40.000 0.00 0.00 0.00 4.18
2578 4169 5.629020 CAGTTGGTTTGATTTGTTATCCGTG 59.371 40.000 0.00 0.00 0.00 4.94
2584 4175 3.669536 TGATTTGTTATCCGTGACTGCA 58.330 40.909 0.00 0.00 0.00 4.41
2704 4295 9.639563 TGGGTTGATTTCATTATAGCTCAATTA 57.360 29.630 0.00 0.00 0.00 1.40
2811 4403 7.134162 TGTGGGGAACATAACTAGTCCTTATA 58.866 38.462 0.00 0.00 32.36 0.98
2861 4453 0.454957 CCGCAAAGTACATGCACTGC 60.455 55.000 19.60 0.00 44.01 4.40
2874 4466 4.334759 ACATGCACTGCTCTATCATGTTTC 59.665 41.667 1.98 0.00 43.40 2.78
2901 4493 5.450171 GCTGTTAGCATCATGTCATCATTC 58.550 41.667 0.00 0.00 41.89 2.67
3142 4738 0.180406 ACGACTGTTCCAAAGGCTGT 59.820 50.000 0.00 0.00 0.00 4.40
3163 4759 2.447443 TCCTAACGACACAGAGAGCAT 58.553 47.619 0.00 0.00 0.00 3.79
3173 4769 5.460419 CGACACAGAGAGCATACTATTTTCC 59.540 44.000 0.00 0.00 0.00 3.13
3188 4784 9.975218 ATACTATTTTCCAATCCTAACAACACT 57.025 29.630 0.00 0.00 0.00 3.55
3306 4904 5.505324 GCAAGAGCAAGATATCATGTGTTCC 60.505 44.000 9.53 0.00 41.58 3.62
3502 5102 0.318614 GGTCGTGGGTTGCACAATTG 60.319 55.000 3.24 3.24 0.00 2.32
3611 5216 6.447084 TCCCTCCTTTATACAAACATCTTCCT 59.553 38.462 0.00 0.00 0.00 3.36
3618 5223 9.831737 CTTTATACAAACATCTTCCTTGTCTTG 57.168 33.333 0.00 0.00 35.09 3.02
3646 5251 6.041637 ACCCATTTTGAAACTAACCTTTCCTC 59.958 38.462 0.00 0.00 30.23 3.71
3689 5294 1.022735 GCTGGACTTGCATGGATCTG 58.977 55.000 4.44 0.00 0.00 2.90
3707 5312 3.814625 TCTGTATGTGTTTGCAACTCCA 58.185 40.909 0.00 0.00 0.00 3.86
3782 5387 0.890683 AAGAATGGGAAAGCAAGGCG 59.109 50.000 0.00 0.00 0.00 5.52
3802 5407 7.719871 AGGCGGAATATGACTATGTAAGTAT 57.280 36.000 0.00 0.00 39.07 2.12
3804 5409 8.594550 AGGCGGAATATGACTATGTAAGTATTT 58.405 33.333 0.00 0.00 39.07 1.40
3839 5444 6.712095 TGATGCTTCTTCTGTTTACAACTGAT 59.288 34.615 0.88 0.00 38.81 2.90
3991 5596 2.435372 TCACAAATACTGGATGGGGC 57.565 50.000 0.00 0.00 0.00 5.80
4057 5662 0.395862 TTGAGGAACGGCCAAAACCA 60.396 50.000 2.24 0.00 40.02 3.67
4078 5683 5.127031 ACCATGGGTTTCAGAATTAAATCCG 59.873 40.000 18.09 0.00 39.54 4.18
4333 5939 7.979444 TTTAACTATTGCCCTATGTGATAGC 57.021 36.000 0.00 0.00 0.00 2.97
4367 5973 6.438259 TGACACTTGTAGATACTAGCTGTC 57.562 41.667 18.38 18.38 38.62 3.51
4555 6163 3.765511 AGTGAATTTGCACTGCATGGTAT 59.234 39.130 4.10 0.00 46.72 2.73
4556 6164 4.949238 AGTGAATTTGCACTGCATGGTATA 59.051 37.500 4.10 0.00 46.72 1.47
4557 6165 5.595542 AGTGAATTTGCACTGCATGGTATAT 59.404 36.000 4.10 0.00 46.72 0.86
4559 6167 5.829391 TGAATTTGCACTGCATGGTATATCT 59.171 36.000 4.10 0.00 38.76 1.98
4560 6168 5.700722 ATTTGCACTGCATGGTATATCTG 57.299 39.130 4.10 0.00 38.76 2.90
4561 6169 3.843893 TGCACTGCATGGTATATCTGT 57.156 42.857 0.00 0.00 31.71 3.41
4562 6170 4.953940 TGCACTGCATGGTATATCTGTA 57.046 40.909 0.00 0.00 31.71 2.74
4563 6171 5.488262 TGCACTGCATGGTATATCTGTAT 57.512 39.130 0.00 0.00 31.71 2.29
4733 6504 6.263617 ACCTGTAATGTTTCCAACGTTTGTAT 59.736 34.615 0.00 0.00 40.80 2.29
4770 6541 5.003804 AGGAAATGTTACTACCAAGTGCTG 58.996 41.667 0.00 0.00 36.36 4.41
4829 6618 6.693315 TTATTACTGCAGGGTATTTCTTGC 57.307 37.500 19.93 0.00 0.00 4.01
4893 6682 0.683973 ACAGAGTTGTGCAGGGAGAG 59.316 55.000 0.00 0.00 35.83 3.20
4941 6730 3.909732 AGAATGGTGGGAGTTTGAAACA 58.090 40.909 11.02 0.00 0.00 2.83
5227 7016 2.352960 GGCTTATGTTTTCAGAGGCTCG 59.647 50.000 9.22 4.43 42.42 5.03
5248 7037 2.533266 AGCTTAGATGGTGCATACGG 57.467 50.000 0.00 0.00 0.00 4.02
5265 7054 6.478673 TGCATACGGTTTATGACACAGATTAG 59.521 38.462 0.00 0.00 0.00 1.73
5705 7495 8.260114 TCATCTAGCTGATTCATTAGTTTGTGA 58.740 33.333 0.00 0.00 32.05 3.58
5786 7578 4.481368 TTGATACCGTGGCATTTACTCT 57.519 40.909 0.00 0.00 0.00 3.24
5804 7596 5.678955 ACTCTGGACCTATAAACCTGAAC 57.321 43.478 0.00 0.00 32.87 3.18
5831 7623 5.128033 TCATCTATTTTGGGCATCTCCAA 57.872 39.130 0.00 0.00 44.29 3.53
5900 7694 7.879677 TGTGATGATGTGACAGAATAAAAGAGT 59.120 33.333 0.00 0.00 0.00 3.24
5988 7782 5.635120 AGAGCAAACTTGGTTTATTCTCCT 58.365 37.500 0.00 0.00 39.30 3.69
6062 7857 3.455469 GCTTGGCAGCCCCATGTC 61.455 66.667 9.64 0.00 44.89 3.06
6074 7869 5.737063 GCAGCCCCATGTCATATAAAAAGTG 60.737 44.000 0.00 0.00 0.00 3.16
6108 7906 8.322906 AGATTGAATGACGTACAAATTTCTGA 57.677 30.769 0.00 0.00 0.00 3.27
6165 7963 4.961438 ACCCTGTTGAAAATTGAATGCT 57.039 36.364 0.00 0.00 0.00 3.79
6265 8064 7.023171 ACTGTGTGAACAAAGGGGTATATAA 57.977 36.000 5.64 0.00 35.50 0.98
6371 8173 5.315348 ACCGAGGACCTATACTTGAGATAC 58.685 45.833 0.00 0.00 0.00 2.24
6481 8283 0.179268 CGTACCTTGTTTACGCGCAC 60.179 55.000 5.73 0.41 36.24 5.34
6535 8337 7.388437 TCATGCTAAATGGCAATCTTCTTTTT 58.612 30.769 0.00 0.00 45.68 1.94
6842 8649 3.198417 AGGTGGTGGTATTAGGTAAACCG 59.802 47.826 0.00 0.00 42.08 4.44
6854 8661 4.436113 AGGTAAACCGGTCCAGTAAAAA 57.564 40.909 8.04 0.00 42.08 1.94
6961 8768 9.567776 TTGGATGACTTTACAATCTTTCACTTA 57.432 29.630 0.00 0.00 0.00 2.24
6962 8769 9.739276 TGGATGACTTTACAATCTTTCACTTAT 57.261 29.630 0.00 0.00 0.00 1.73
7137 8961 1.702401 TGGAACTGCCAGGATACAACA 59.298 47.619 0.00 0.00 43.33 3.33
7340 9164 4.227134 CGGCCTGCTGCGAGGTAT 62.227 66.667 16.03 0.00 42.61 2.73
7491 9317 5.518812 GTTTGACAAAGATGTATGTGCACA 58.481 37.500 24.08 24.08 40.74 4.57
7785 9612 1.327303 TTTCAACCCTGGCATGTGAC 58.673 50.000 0.00 0.00 0.00 3.67
7793 9620 1.162698 CTGGCATGTGACCTGACTTG 58.837 55.000 0.00 0.00 0.00 3.16
7821 9649 1.230324 GAATCAGGCGGGTAAGCATC 58.770 55.000 0.00 0.00 39.27 3.91
7868 9774 2.946947 CAATTGAGTTGGCCGTCCT 58.053 52.632 0.00 0.00 34.06 3.85
7903 12431 2.158769 GCCACCCTACATGTCATCATCA 60.159 50.000 0.00 0.00 31.15 3.07
7915 12443 0.032130 CATCATCAGGTACCCCGTCG 59.968 60.000 8.74 0.00 35.12 5.12
8050 12578 4.514066 GCGAAGGAAGTTTTGTCTAAGGAA 59.486 41.667 0.00 0.00 0.00 3.36
8213 12763 2.517402 CCGGAGGCGCTAGAGACT 60.517 66.667 0.00 0.00 46.14 3.24
8219 12769 0.609406 AGGCGCTAGAGACTGTGTGA 60.609 55.000 7.64 0.00 0.00 3.58
8220 12770 0.456995 GGCGCTAGAGACTGTGTGAC 60.457 60.000 7.64 0.00 0.00 3.67
8360 12918 3.944422 TCGCTTCTTTCATTATTCGCC 57.056 42.857 0.00 0.00 0.00 5.54
8551 13139 6.545504 CCTACATATGATTTTGGAGGAACG 57.454 41.667 10.38 0.00 45.47 3.95
8557 13145 1.737793 GATTTTGGAGGAACGTCGCAT 59.262 47.619 0.00 0.00 0.00 4.73
8567 13155 2.190981 GAACGTCGCATACTACCAAGG 58.809 52.381 0.00 0.00 0.00 3.61
8582 13171 6.192044 ACTACCAAGGAAAAAGGTCAAAGAA 58.808 36.000 0.00 0.00 36.87 2.52
8603 13192 1.604378 CCAAGGCAAGAGGTCCGAT 59.396 57.895 0.00 0.00 0.00 4.18
8668 13260 3.944015 GGCCACAAGCATGATCCTATATC 59.056 47.826 0.00 0.00 46.50 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.013599 ACAGCTACCTCCTTTCTCTGAAATT 59.986 40.000 0.00 0.00 0.00 1.82
1 2 4.534103 ACAGCTACCTCCTTTCTCTGAAAT 59.466 41.667 0.00 0.00 0.00 2.17
5 6 2.828520 TCACAGCTACCTCCTTTCTCTG 59.171 50.000 0.00 0.00 0.00 3.35
6 7 3.176924 TCACAGCTACCTCCTTTCTCT 57.823 47.619 0.00 0.00 0.00 3.10
13 14 5.488341 TCTTTGTAATTCACAGCTACCTCC 58.512 41.667 0.00 0.00 38.72 4.30
14 15 6.398918 TCTCTTTGTAATTCACAGCTACCTC 58.601 40.000 0.00 0.00 38.72 3.85
15 16 6.360370 TCTCTTTGTAATTCACAGCTACCT 57.640 37.500 0.00 0.00 38.72 3.08
16 17 6.651225 ACTTCTCTTTGTAATTCACAGCTACC 59.349 38.462 0.00 0.00 38.72 3.18
97 98 7.467623 AGCTACTTCTCTTGCGAATTTATTTG 58.532 34.615 0.00 0.00 0.00 2.32
98 99 7.617041 AGCTACTTCTCTTGCGAATTTATTT 57.383 32.000 0.00 0.00 0.00 1.40
100 101 7.617041 AAAGCTACTTCTCTTGCGAATTTAT 57.383 32.000 0.00 0.00 0.00 1.40
101 102 7.435068 AAAAGCTACTTCTCTTGCGAATTTA 57.565 32.000 0.00 0.00 0.00 1.40
102 103 5.948992 AAAGCTACTTCTCTTGCGAATTT 57.051 34.783 0.00 0.00 0.00 1.82
103 104 5.948992 AAAAGCTACTTCTCTTGCGAATT 57.051 34.783 0.00 0.00 0.00 2.17
104 105 5.948992 AAAAAGCTACTTCTCTTGCGAAT 57.051 34.783 0.00 0.00 0.00 3.34
123 124 6.993786 TGTGTCTGTACTGATGTTCAAAAA 57.006 33.333 5.69 0.00 0.00 1.94
124 125 6.458206 GCTTGTGTCTGTACTGATGTTCAAAA 60.458 38.462 5.69 0.61 0.00 2.44
125 126 5.007626 GCTTGTGTCTGTACTGATGTTCAAA 59.992 40.000 5.69 0.00 0.00 2.69
126 127 4.511454 GCTTGTGTCTGTACTGATGTTCAA 59.489 41.667 5.69 8.15 0.00 2.69
128 129 3.121944 CGCTTGTGTCTGTACTGATGTTC 59.878 47.826 5.69 0.00 0.00 3.18
129 130 3.059884 CGCTTGTGTCTGTACTGATGTT 58.940 45.455 5.69 0.00 0.00 2.71
130 131 2.677199 CGCTTGTGTCTGTACTGATGT 58.323 47.619 5.69 0.00 0.00 3.06
131 132 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
134 135 1.502231 AAGCGCTTGTGTCTGTACTG 58.498 50.000 24.40 0.00 0.00 2.74
135 136 3.594603 ATAAGCGCTTGTGTCTGTACT 57.405 42.857 32.23 3.76 0.00 2.73
139 140 4.209288 GGTGTATATAAGCGCTTGTGTCTG 59.791 45.833 32.23 0.00 0.00 3.51
140 141 4.099573 AGGTGTATATAAGCGCTTGTGTCT 59.900 41.667 32.23 13.91 0.00 3.41
141 142 4.209288 CAGGTGTATATAAGCGCTTGTGTC 59.791 45.833 32.23 18.77 0.00 3.67
142 143 4.119862 CAGGTGTATATAAGCGCTTGTGT 58.880 43.478 32.23 25.25 0.00 3.72
143 144 3.059597 GCAGGTGTATATAAGCGCTTGTG 60.060 47.826 32.23 12.09 0.00 3.33
144 145 3.131396 GCAGGTGTATATAAGCGCTTGT 58.869 45.455 32.23 27.59 0.00 3.16
145 146 3.130633 TGCAGGTGTATATAAGCGCTTG 58.869 45.455 32.23 13.34 0.00 4.01
146 147 3.469008 TGCAGGTGTATATAAGCGCTT 57.531 42.857 27.97 27.97 0.00 4.68
147 148 3.685139 ATGCAGGTGTATATAAGCGCT 57.315 42.857 2.64 2.64 0.00 5.92
152 153 6.239487 GGGTGAGTGTATGCAGGTGTATATAA 60.239 42.308 0.00 0.00 0.00 0.98
153 154 5.245301 GGGTGAGTGTATGCAGGTGTATATA 59.755 44.000 0.00 0.00 0.00 0.86
154 155 4.040461 GGGTGAGTGTATGCAGGTGTATAT 59.960 45.833 0.00 0.00 0.00 0.86
156 157 2.170607 GGGTGAGTGTATGCAGGTGTAT 59.829 50.000 0.00 0.00 0.00 2.29
157 158 1.553248 GGGTGAGTGTATGCAGGTGTA 59.447 52.381 0.00 0.00 0.00 2.90
158 159 0.324943 GGGTGAGTGTATGCAGGTGT 59.675 55.000 0.00 0.00 0.00 4.16
159 160 0.392998 GGGGTGAGTGTATGCAGGTG 60.393 60.000 0.00 0.00 0.00 4.00
160 161 0.547712 AGGGGTGAGTGTATGCAGGT 60.548 55.000 0.00 0.00 0.00 4.00
161 162 1.496060 TAGGGGTGAGTGTATGCAGG 58.504 55.000 0.00 0.00 0.00 4.85
162 163 2.700371 TCATAGGGGTGAGTGTATGCAG 59.300 50.000 0.00 0.00 0.00 4.41
165 166 3.132289 ACGTTCATAGGGGTGAGTGTATG 59.868 47.826 0.00 0.00 0.00 2.39
166 167 3.371965 ACGTTCATAGGGGTGAGTGTAT 58.628 45.455 0.00 0.00 0.00 2.29
167 168 2.811410 ACGTTCATAGGGGTGAGTGTA 58.189 47.619 0.00 0.00 0.00 2.90
168 169 1.640917 ACGTTCATAGGGGTGAGTGT 58.359 50.000 0.00 0.00 0.00 3.55
170 171 2.494870 GTGTACGTTCATAGGGGTGAGT 59.505 50.000 0.00 0.00 0.00 3.41
171 172 2.494471 TGTGTACGTTCATAGGGGTGAG 59.506 50.000 0.00 0.00 0.00 3.51
173 174 2.613691 GTGTGTACGTTCATAGGGGTG 58.386 52.381 0.00 0.00 0.00 4.61
174 175 1.203052 CGTGTGTACGTTCATAGGGGT 59.797 52.381 0.00 0.00 44.99 4.95
186 187 1.226030 GGAAGGGTGTGCGTGTGTAC 61.226 60.000 0.00 0.00 0.00 2.90
187 188 1.070105 GGAAGGGTGTGCGTGTGTA 59.930 57.895 0.00 0.00 0.00 2.90
188 189 2.203153 GGAAGGGTGTGCGTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
190 191 1.198759 ATAGGGAAGGGTGTGCGTGT 61.199 55.000 0.00 0.00 0.00 4.49
191 192 0.744414 CATAGGGAAGGGTGTGCGTG 60.744 60.000 0.00 0.00 0.00 5.34
192 193 0.907704 TCATAGGGAAGGGTGTGCGT 60.908 55.000 0.00 0.00 0.00 5.24
194 195 0.464554 GCTCATAGGGAAGGGTGTGC 60.465 60.000 0.00 0.00 0.00 4.57
197 198 0.181350 GGTGCTCATAGGGAAGGGTG 59.819 60.000 0.00 0.00 0.00 4.61
198 199 0.044855 AGGTGCTCATAGGGAAGGGT 59.955 55.000 0.00 0.00 0.00 4.34
199 200 1.141858 GAAGGTGCTCATAGGGAAGGG 59.858 57.143 0.00 0.00 0.00 3.95
202 203 1.860641 TCGAAGGTGCTCATAGGGAA 58.139 50.000 0.00 0.00 0.00 3.97
203 204 1.860641 TTCGAAGGTGCTCATAGGGA 58.139 50.000 0.00 0.00 0.00 4.20
204 205 2.168521 TCTTTCGAAGGTGCTCATAGGG 59.831 50.000 7.20 0.00 0.00 3.53
207 208 3.509967 TCAGTCTTTCGAAGGTGCTCATA 59.490 43.478 7.20 0.00 0.00 2.15
209 210 1.686587 TCAGTCTTTCGAAGGTGCTCA 59.313 47.619 7.20 0.00 0.00 4.26
210 211 2.288518 ACTCAGTCTTTCGAAGGTGCTC 60.289 50.000 7.20 0.00 0.00 4.26
211 212 1.689273 ACTCAGTCTTTCGAAGGTGCT 59.311 47.619 7.20 4.49 0.00 4.40
212 213 2.062519 GACTCAGTCTTTCGAAGGTGC 58.937 52.381 7.20 2.27 0.00 5.01
213 214 2.320367 CGACTCAGTCTTTCGAAGGTG 58.680 52.381 7.20 0.00 34.62 4.00
214 215 1.269998 CCGACTCAGTCTTTCGAAGGT 59.730 52.381 7.20 0.00 34.62 3.50
216 217 1.335964 TGCCGACTCAGTCTTTCGAAG 60.336 52.381 2.61 0.00 34.62 3.79
217 218 0.671796 TGCCGACTCAGTCTTTCGAA 59.328 50.000 2.61 0.00 34.62 3.71
219 220 2.561733 TATGCCGACTCAGTCTTTCG 57.438 50.000 2.61 0.00 0.00 3.46
220 221 4.046938 TGATATGCCGACTCAGTCTTTC 57.953 45.455 2.61 0.00 0.00 2.62
221 222 4.679373 ATGATATGCCGACTCAGTCTTT 57.321 40.909 2.61 0.00 0.00 2.52
222 223 4.679373 AATGATATGCCGACTCAGTCTT 57.321 40.909 2.61 0.00 0.00 3.01
223 224 4.679373 AAATGATATGCCGACTCAGTCT 57.321 40.909 2.61 0.00 0.00 3.24
224 225 4.811024 TCAAAATGATATGCCGACTCAGTC 59.189 41.667 0.00 0.00 0.00 3.51
225 226 4.769688 TCAAAATGATATGCCGACTCAGT 58.230 39.130 0.00 0.00 0.00 3.41
226 227 5.052481 TCTCAAAATGATATGCCGACTCAG 58.948 41.667 0.00 0.00 0.00 3.35
229 230 6.949352 AAATCTCAAAATGATATGCCGACT 57.051 33.333 0.00 0.00 0.00 4.18
230 231 6.792250 CGTAAATCTCAAAATGATATGCCGAC 59.208 38.462 0.00 0.00 0.00 4.79
231 232 6.704050 TCGTAAATCTCAAAATGATATGCCGA 59.296 34.615 0.00 0.00 0.00 5.54
232 233 6.887368 TCGTAAATCTCAAAATGATATGCCG 58.113 36.000 0.00 0.00 0.00 5.69
233 234 8.345565 ACTTCGTAAATCTCAAAATGATATGCC 58.654 33.333 0.00 0.00 0.00 4.40
238 239 7.413000 CGGTGACTTCGTAAATCTCAAAATGAT 60.413 37.037 0.00 0.00 0.00 2.45
239 240 6.128661 CGGTGACTTCGTAAATCTCAAAATGA 60.129 38.462 0.00 0.00 0.00 2.57
240 241 6.015504 CGGTGACTTCGTAAATCTCAAAATG 58.984 40.000 0.00 0.00 0.00 2.32
242 243 5.051816 ACGGTGACTTCGTAAATCTCAAAA 58.948 37.500 0.00 0.00 39.22 2.44
245 246 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
247 248 4.110482 GCATACGGTGACTTCGTAAATCT 58.890 43.478 0.00 0.00 44.57 2.40
249 250 3.615496 GTGCATACGGTGACTTCGTAAAT 59.385 43.478 0.00 0.00 44.57 1.40
250 251 2.988493 GTGCATACGGTGACTTCGTAAA 59.012 45.455 0.00 0.00 44.57 2.01
251 252 2.598589 GTGCATACGGTGACTTCGTAA 58.401 47.619 0.00 0.00 44.57 3.18
253 254 0.389426 GGTGCATACGGTGACTTCGT 60.389 55.000 0.00 0.00 43.64 3.85
254 255 0.108804 AGGTGCATACGGTGACTTCG 60.109 55.000 0.00 0.00 0.00 3.79
255 256 1.067142 TGAGGTGCATACGGTGACTTC 60.067 52.381 0.00 0.00 0.00 3.01
256 257 0.973632 TGAGGTGCATACGGTGACTT 59.026 50.000 0.00 0.00 0.00 3.01
257 258 1.137086 GATGAGGTGCATACGGTGACT 59.863 52.381 0.00 0.00 37.34 3.41
260 261 0.179111 ACGATGAGGTGCATACGGTG 60.179 55.000 0.00 0.00 37.34 4.94
261 262 0.102481 GACGATGAGGTGCATACGGT 59.898 55.000 0.00 0.00 37.34 4.83
262 263 0.934901 CGACGATGAGGTGCATACGG 60.935 60.000 0.00 0.00 37.34 4.02
263 264 0.028902 TCGACGATGAGGTGCATACG 59.971 55.000 0.00 0.00 37.34 3.06
264 265 1.478137 GTCGACGATGAGGTGCATAC 58.522 55.000 0.00 0.00 37.34 2.39
265 266 0.028902 CGTCGACGATGAGGTGCATA 59.971 55.000 33.35 0.00 43.02 3.14
268 269 2.579787 CCGTCGACGATGAGGTGC 60.580 66.667 37.65 0.00 43.02 5.01
270 271 1.676635 TTCCCGTCGACGATGAGGT 60.677 57.895 37.65 0.00 43.02 3.85
271 272 1.226603 GTTCCCGTCGACGATGAGG 60.227 63.158 37.65 28.37 43.02 3.86
273 274 2.327343 ACGTTCCCGTCGACGATGA 61.327 57.895 37.65 28.41 46.28 2.92
274 275 2.177531 ACGTTCCCGTCGACGATG 59.822 61.111 37.65 26.71 46.28 3.84
286 287 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
288 289 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
289 290 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
292 293 0.824109 TACGCATTCAGTGGGAGGAG 59.176 55.000 0.00 0.00 43.02 3.69
293 294 1.412710 GATACGCATTCAGTGGGAGGA 59.587 52.381 0.00 0.00 43.02 3.71
294 295 1.869754 CGATACGCATTCAGTGGGAGG 60.870 57.143 0.00 0.00 43.02 4.30
295 296 1.202417 ACGATACGCATTCAGTGGGAG 60.202 52.381 0.00 0.00 43.02 4.30
296 297 0.821517 ACGATACGCATTCAGTGGGA 59.178 50.000 0.00 0.00 43.02 4.37
297 298 1.209128 GACGATACGCATTCAGTGGG 58.791 55.000 0.00 0.00 45.61 4.61
298 299 1.854743 CTGACGATACGCATTCAGTGG 59.145 52.381 0.00 0.00 32.41 4.00
299 300 2.797491 TCTGACGATACGCATTCAGTG 58.203 47.619 0.00 0.00 37.38 3.66
300 301 3.503827 TTCTGACGATACGCATTCAGT 57.496 42.857 0.00 0.00 37.38 3.41
301 302 4.084849 GGATTTCTGACGATACGCATTCAG 60.085 45.833 0.00 0.00 37.43 3.02
304 305 3.804325 CAGGATTTCTGACGATACGCATT 59.196 43.478 0.00 0.00 46.18 3.56
305 306 3.068165 TCAGGATTTCTGACGATACGCAT 59.932 43.478 0.00 0.00 46.71 4.73
306 307 2.425668 TCAGGATTTCTGACGATACGCA 59.574 45.455 0.00 0.00 46.71 5.24
327 328 9.585099 TGCTCGCATTTATTTCTGAATTTATTT 57.415 25.926 0.00 0.00 0.00 1.40
328 329 9.023967 GTGCTCGCATTTATTTCTGAATTTATT 57.976 29.630 0.00 0.00 0.00 1.40
331 332 5.807011 GGTGCTCGCATTTATTTCTGAATTT 59.193 36.000 0.00 0.00 0.00 1.82
333 334 4.398988 TGGTGCTCGCATTTATTTCTGAAT 59.601 37.500 0.00 0.00 0.00 2.57
334 335 3.755905 TGGTGCTCGCATTTATTTCTGAA 59.244 39.130 0.00 0.00 0.00 3.02
336 337 3.488047 CCTGGTGCTCGCATTTATTTCTG 60.488 47.826 0.00 0.00 0.00 3.02
337 338 2.684881 CCTGGTGCTCGCATTTATTTCT 59.315 45.455 0.00 0.00 0.00 2.52
339 340 2.722094 TCCTGGTGCTCGCATTTATTT 58.278 42.857 0.00 0.00 0.00 1.40
340 341 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
341 342 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
342 343 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
343 344 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
344 345 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
345 346 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
347 348 0.881118 TTTCAAATCCTGGTGCTCGC 59.119 50.000 0.00 0.00 0.00 5.03
349 350 1.546029 GGGTTTCAAATCCTGGTGCTC 59.454 52.381 0.00 0.00 0.00 4.26
350 351 1.147817 AGGGTTTCAAATCCTGGTGCT 59.852 47.619 0.00 0.00 0.00 4.40
351 352 1.273327 CAGGGTTTCAAATCCTGGTGC 59.727 52.381 20.60 0.00 43.09 5.01
355 356 1.895131 CCACCAGGGTTTCAAATCCTG 59.105 52.381 21.30 21.30 45.57 3.86
356 357 2.309136 CCACCAGGGTTTCAAATCCT 57.691 50.000 0.00 0.00 0.00 3.24
369 370 0.911769 TGGTATTCTCAGCCCACCAG 59.088 55.000 0.00 0.00 34.40 4.00
370 371 0.618458 GTGGTATTCTCAGCCCACCA 59.382 55.000 0.00 0.00 41.20 4.17
371 372 0.618458 TGTGGTATTCTCAGCCCACC 59.382 55.000 5.31 0.00 45.41 4.61
374 375 1.834263 AGACTGTGGTATTCTCAGCCC 59.166 52.381 0.00 0.00 33.12 5.19
376 377 3.699038 AGAGAGACTGTGGTATTCTCAGC 59.301 47.826 0.00 0.00 37.51 4.26
379 380 5.652891 TGGTTAGAGAGACTGTGGTATTCTC 59.347 44.000 0.00 0.00 36.93 2.87
380 381 5.580998 TGGTTAGAGAGACTGTGGTATTCT 58.419 41.667 0.00 0.00 0.00 2.40
381 382 5.916661 TGGTTAGAGAGACTGTGGTATTC 57.083 43.478 0.00 0.00 0.00 1.75
383 384 6.875972 AAATGGTTAGAGAGACTGTGGTAT 57.124 37.500 0.00 0.00 0.00 2.73
384 385 7.453752 AGTTAAATGGTTAGAGAGACTGTGGTA 59.546 37.037 0.00 0.00 0.00 3.25
385 386 6.270231 AGTTAAATGGTTAGAGAGACTGTGGT 59.730 38.462 0.00 0.00 0.00 4.16
387 388 8.304596 TGTAGTTAAATGGTTAGAGAGACTGTG 58.695 37.037 0.00 0.00 0.00 3.66
388 389 8.418597 TGTAGTTAAATGGTTAGAGAGACTGT 57.581 34.615 0.00 0.00 0.00 3.55
389 390 8.740906 TCTGTAGTTAAATGGTTAGAGAGACTG 58.259 37.037 0.00 0.00 0.00 3.51
390 391 8.880991 TCTGTAGTTAAATGGTTAGAGAGACT 57.119 34.615 0.00 0.00 0.00 3.24
398 399 8.609176 GCGAATCAATCTGTAGTTAAATGGTTA 58.391 33.333 0.00 0.00 0.00 2.85
399 400 7.120579 TGCGAATCAATCTGTAGTTAAATGGTT 59.879 33.333 0.00 0.00 0.00 3.67
400 401 6.597672 TGCGAATCAATCTGTAGTTAAATGGT 59.402 34.615 0.00 0.00 0.00 3.55
401 402 7.015226 TGCGAATCAATCTGTAGTTAAATGG 57.985 36.000 0.00 0.00 0.00 3.16
402 403 8.390354 TCTTGCGAATCAATCTGTAGTTAAATG 58.610 33.333 0.00 0.00 33.57 2.32
403 404 8.492673 TCTTGCGAATCAATCTGTAGTTAAAT 57.507 30.769 0.00 0.00 33.57 1.40
407 408 5.934625 ACTTCTTGCGAATCAATCTGTAGTT 59.065 36.000 0.00 0.00 33.57 2.24
408 409 5.482908 ACTTCTTGCGAATCAATCTGTAGT 58.517 37.500 0.00 0.00 33.57 2.73
409 410 6.292061 GCTACTTCTTGCGAATCAATCTGTAG 60.292 42.308 0.00 0.00 35.69 2.74
410 411 5.520288 GCTACTTCTTGCGAATCAATCTGTA 59.480 40.000 0.00 0.00 33.57 2.74
412 413 4.569966 AGCTACTTCTTGCGAATCAATCTG 59.430 41.667 0.00 0.00 33.57 2.90
413 414 4.569966 CAGCTACTTCTTGCGAATCAATCT 59.430 41.667 0.00 0.00 33.57 2.40
414 415 4.331168 ACAGCTACTTCTTGCGAATCAATC 59.669 41.667 0.00 0.00 33.57 2.67
416 417 3.433274 CACAGCTACTTCTTGCGAATCAA 59.567 43.478 0.00 0.00 0.00 2.57
417 418 2.995939 CACAGCTACTTCTTGCGAATCA 59.004 45.455 0.00 0.00 0.00 2.57
418 419 3.254060 TCACAGCTACTTCTTGCGAATC 58.746 45.455 0.00 0.00 0.00 2.52
419 420 3.319137 TCACAGCTACTTCTTGCGAAT 57.681 42.857 0.00 0.00 0.00 3.34
421 422 2.677199 CTTCACAGCTACTTCTTGCGA 58.323 47.619 0.00 0.00 0.00 5.10
434 846 5.049167 CCTCTTATAGAAGCAGCTTCACAG 58.951 45.833 32.20 21.66 42.37 3.66
505 918 2.781431 TAGAGGCGCCCACTGTGAGA 62.781 60.000 26.15 4.65 0.00 3.27
520 933 5.549742 ATCTTCTTCCTCCTGCATTAGAG 57.450 43.478 0.00 0.00 0.00 2.43
522 935 6.183360 CCAAAATCTTCTTCCTCCTGCATTAG 60.183 42.308 0.00 0.00 0.00 1.73
523 936 5.653769 CCAAAATCTTCTTCCTCCTGCATTA 59.346 40.000 0.00 0.00 0.00 1.90
524 937 4.465305 CCAAAATCTTCTTCCTCCTGCATT 59.535 41.667 0.00 0.00 0.00 3.56
526 939 3.424703 CCAAAATCTTCTTCCTCCTGCA 58.575 45.455 0.00 0.00 0.00 4.41
527 940 2.165234 GCCAAAATCTTCTTCCTCCTGC 59.835 50.000 0.00 0.00 0.00 4.85
528 941 3.192212 GTGCCAAAATCTTCTTCCTCCTG 59.808 47.826 0.00 0.00 0.00 3.86
529 942 3.425659 GTGCCAAAATCTTCTTCCTCCT 58.574 45.455 0.00 0.00 0.00 3.69
530 943 2.493675 GGTGCCAAAATCTTCTTCCTCC 59.506 50.000 0.00 0.00 0.00 4.30
579 1072 5.934625 ACAAGTCCTTAGAATGCACACTTAG 59.065 40.000 0.00 0.00 0.00 2.18
674 1171 2.158813 AGAGGTTTTGCGGAGTTGAGAA 60.159 45.455 0.00 0.00 0.00 2.87
675 1172 1.416401 AGAGGTTTTGCGGAGTTGAGA 59.584 47.619 0.00 0.00 0.00 3.27
804 1301 4.062991 AGTTGTTTCACCGTCCAATAGAC 58.937 43.478 0.00 0.00 42.54 2.59
823 1320 3.334054 GCTCTGGGCCCTGGAGTT 61.334 66.667 31.34 0.00 34.27 3.01
879 1381 1.300931 GCACGGTGAAGACAGCAGA 60.301 57.895 13.29 0.00 43.66 4.26
929 1438 3.311110 GAGGCTGGTGGTGTCGGA 61.311 66.667 0.00 0.00 0.00 4.55
977 1486 2.285368 TCTGCGGTTGGGGGAGAT 60.285 61.111 0.00 0.00 0.00 2.75
985 1494 2.334946 CCATGGTGGTCTGCGGTTG 61.335 63.158 2.57 0.00 31.35 3.77
1305 1814 1.134530 CGTTCTCGTAGAAGCAGGCG 61.135 60.000 0.00 0.00 34.42 5.52
1336 1845 0.666577 CCGGAGTCGTTGTGGAAGAC 60.667 60.000 0.00 0.00 35.30 3.01
1337 1846 1.663739 CCGGAGTCGTTGTGGAAGA 59.336 57.895 0.00 0.00 33.95 2.87
1409 1918 2.357517 CTCTGCGGCGGACTTTGT 60.358 61.111 9.78 0.00 0.00 2.83
1428 1937 3.712881 GCAGTTCGTGGTGACCGC 61.713 66.667 4.80 4.80 0.00 5.68
1434 1943 3.865929 CTCTGCGGCAGTTCGTGGT 62.866 63.158 27.63 0.00 32.61 4.16
1518 2029 5.306419 TCTCCCGATCTTGATTCATCAGAAT 59.694 40.000 0.00 0.00 46.85 2.40
1519 2030 4.651045 TCTCCCGATCTTGATTCATCAGAA 59.349 41.667 0.00 0.00 38.19 3.02
1568 2079 2.037641 TCTATCCGCAATCACATGGGAG 59.962 50.000 2.98 0.00 35.42 4.30
1601 3179 2.807045 CACTCTCGCAGCCACGAC 60.807 66.667 0.00 0.00 37.09 4.34
1617 3195 4.649310 TAAGTGGCGCGCGTGTCA 62.649 61.111 32.35 24.87 0.00 3.58
1665 3243 1.321743 GTGTCATCGTCATGAACTCGC 59.678 52.381 0.00 0.00 40.90 5.03
1718 3296 3.807622 GCTAGTACTGTCTTGTTTGCACA 59.192 43.478 5.39 0.00 0.00 4.57
1719 3297 3.807622 TGCTAGTACTGTCTTGTTTGCAC 59.192 43.478 5.39 0.00 0.00 4.57
1771 3352 1.613270 GGTCAAAAATGGTTAGCGCG 58.387 50.000 0.00 0.00 0.00 6.86
1773 3354 1.731098 GCGGGTCAAAAATGGTTAGCG 60.731 52.381 0.00 0.00 0.00 4.26
1776 3357 2.164338 GAGGCGGGTCAAAAATGGTTA 58.836 47.619 0.00 0.00 0.00 2.85
1803 3384 2.139118 GATACCAAGCCAGCGAGAATC 58.861 52.381 0.00 0.00 0.00 2.52
1835 3416 4.270245 TGCTCCATTTTCCAATTGGTTC 57.730 40.909 23.76 4.93 36.34 3.62
1842 3423 3.118482 TGCTGTTTTGCTCCATTTTCCAA 60.118 39.130 0.00 0.00 0.00 3.53
1846 3427 3.319755 CGATGCTGTTTTGCTCCATTTT 58.680 40.909 0.00 0.00 0.00 1.82
1886 3467 3.843510 GCTCGAGGTAACAAACAACAACG 60.844 47.826 15.58 0.00 41.41 4.10
1888 3469 3.271729 TGCTCGAGGTAACAAACAACAA 58.728 40.909 15.58 0.00 41.41 2.83
1889 3470 2.907634 TGCTCGAGGTAACAAACAACA 58.092 42.857 15.58 0.00 41.41 3.33
1890 3471 3.303791 CCTTGCTCGAGGTAACAAACAAC 60.304 47.826 15.58 0.00 41.41 3.32
1891 3472 2.875933 CCTTGCTCGAGGTAACAAACAA 59.124 45.455 15.58 6.14 41.41 2.83
1892 3473 2.489971 CCTTGCTCGAGGTAACAAACA 58.510 47.619 15.58 0.00 41.41 2.83
1893 3474 1.197036 GCCTTGCTCGAGGTAACAAAC 59.803 52.381 15.58 1.60 39.11 2.93
1894 3475 1.519408 GCCTTGCTCGAGGTAACAAA 58.481 50.000 15.58 0.00 39.11 2.83
1926 3507 2.877360 TATCGAGTTGACCGCCGTGC 62.877 60.000 0.00 0.00 0.00 5.34
1931 3512 0.179156 TTCCGTATCGAGTTGACCGC 60.179 55.000 0.00 0.00 0.00 5.68
2006 3597 1.118838 TGTGGCTTGAAACAAAGGGG 58.881 50.000 0.00 0.00 0.00 4.79
2030 3621 0.106519 AAGGAATTCAGATGCGGGGG 60.107 55.000 7.93 0.00 0.00 5.40
2092 3683 2.686835 GAGGAGCCTGAGCCTGGT 60.687 66.667 0.00 0.00 41.25 4.00
2102 3693 4.890306 GGGGGAGGAGGAGGAGCC 62.890 77.778 0.00 0.00 0.00 4.70
2178 3769 3.689002 GAGGAAGAGCGGCCCCTTG 62.689 68.421 9.51 0.00 0.00 3.61
2469 4060 8.230486 CCCAAAAGCGAGTATAATAATAAGCAG 58.770 37.037 0.00 0.00 0.00 4.24
2562 4153 4.068599 TGCAGTCACGGATAACAAATCAA 58.931 39.130 0.00 0.00 0.00 2.57
2564 4155 3.063997 CCTGCAGTCACGGATAACAAATC 59.936 47.826 13.81 0.00 0.00 2.17
2576 4167 1.728971 CAAGATCGTTCCTGCAGTCAC 59.271 52.381 13.81 7.70 0.00 3.67
2578 4169 1.996191 GTCAAGATCGTTCCTGCAGTC 59.004 52.381 13.81 2.01 0.00 3.51
2584 4175 3.594603 AATCGTGTCAAGATCGTTCCT 57.405 42.857 1.52 0.00 0.00 3.36
2695 4286 3.629398 GCAACAGCTACCATAATTGAGCT 59.371 43.478 0.00 0.00 46.08 4.09
2729 4321 1.625818 AGGGGACACAGCTAAGAAGTG 59.374 52.381 0.00 0.00 39.12 3.16
2739 4331 1.003355 ATCACGCAAGGGGACACAG 60.003 57.895 0.00 0.00 44.90 3.66
2861 4453 6.293298 GCTAACAGCCATGAAACATGATAGAG 60.293 42.308 12.46 4.46 34.48 2.43
2874 4466 2.946990 TGACATGATGCTAACAGCCATG 59.053 45.455 0.00 12.81 41.51 3.66
2901 4493 7.035840 AGTGCAATTATAGCTTTCCAATCTG 57.964 36.000 0.00 0.00 0.00 2.90
3142 4738 2.235891 TGCTCTCTGTGTCGTTAGGAA 58.764 47.619 0.00 0.00 0.00 3.36
3163 4759 9.226606 CAGTGTTGTTAGGATTGGAAAATAGTA 57.773 33.333 0.00 0.00 0.00 1.82
3173 4769 4.318332 TGCTCTCAGTGTTGTTAGGATTG 58.682 43.478 0.00 0.00 0.00 2.67
3282 4880 5.496133 AACACATGATATCTTGCTCTTGC 57.504 39.130 16.39 0.00 40.20 4.01
3306 4904 5.766150 TCCTTACGGCATAAAATTGATGG 57.234 39.130 0.00 0.00 0.00 3.51
3406 5004 8.168725 ACATCATATGGAAGATAATTCTGGCTT 58.831 33.333 2.13 0.00 30.45 4.35
3478 5077 1.530323 GTGCAACCCACGACCTTTAT 58.470 50.000 0.00 0.00 34.22 1.40
3577 5182 9.692749 GTTTGTATAAAGGAGGGAAAAGAAAAG 57.307 33.333 0.00 0.00 0.00 2.27
3580 5185 8.950007 ATGTTTGTATAAAGGAGGGAAAAGAA 57.050 30.769 0.00 0.00 0.00 2.52
3611 5216 5.362430 AGTTTCAAAATGGGTAGCAAGACAA 59.638 36.000 0.00 0.00 0.00 3.18
3618 5223 5.977489 AGGTTAGTTTCAAAATGGGTAGC 57.023 39.130 0.00 0.00 0.00 3.58
3646 5251 3.381045 TGTGCTTTCGTTGTCTACAGAG 58.619 45.455 0.00 0.00 0.00 3.35
3707 5312 5.881923 AGTAATCCCATGTAACACGGTAT 57.118 39.130 0.00 0.00 0.00 2.73
3802 5407 7.715249 ACAGAAGAAGCATCAGTTACTACAAAA 59.285 33.333 0.00 0.00 0.00 2.44
3804 5409 6.759272 ACAGAAGAAGCATCAGTTACTACAA 58.241 36.000 0.00 0.00 0.00 2.41
4057 5662 5.515106 TCCGGATTTAATTCTGAAACCCAT 58.485 37.500 0.00 0.00 0.00 4.00
4319 5925 3.641434 ATCATGGCTATCACATAGGGC 57.359 47.619 0.00 0.00 33.43 5.19
4563 6171 9.793259 CCCTCTTAATATGGCTGAAATAACTAA 57.207 33.333 0.00 0.00 0.00 2.24
4646 6417 3.517901 ACCTATAGCCAGTAACAGCAACA 59.482 43.478 0.00 0.00 0.00 3.33
4733 6504 9.362151 AGTAACATTTCCTTTATTTGTCTTCCA 57.638 29.630 0.00 0.00 0.00 3.53
4770 6541 9.661187 CAAGCAGAACAACATCTAAATATGATC 57.339 33.333 0.00 0.00 0.00 2.92
4829 6618 5.294306 ACTGAAACTGATATAACGCATGTGG 59.706 40.000 11.65 0.00 0.00 4.17
4893 6682 5.336213 CCATGGCAAGACAGCAATAATATCC 60.336 44.000 0.00 0.00 35.83 2.59
5198 6987 6.652481 CCTCTGAAAACATAAGCCGATGATAT 59.348 38.462 2.57 0.00 0.00 1.63
5227 7016 3.243771 ACCGTATGCACCATCTAAGCTAC 60.244 47.826 0.00 0.00 0.00 3.58
5705 7495 3.815401 GTGGTCACACAAGAGCTTATTGT 59.185 43.478 11.35 11.35 46.90 2.71
5786 7578 6.670464 TGATAGTGTTCAGGTTTATAGGTCCA 59.330 38.462 0.00 0.00 0.00 4.02
5804 7596 6.373774 GGAGATGCCCAAAATAGATGATAGTG 59.626 42.308 0.00 0.00 0.00 2.74
5900 7694 8.797438 CATGGTATATGCAAGTTACTCTCTCTA 58.203 37.037 0.00 0.00 0.00 2.43
5988 7782 6.177310 TGTTAAGTTTTCCAGTAGGCTGTA 57.823 37.500 0.00 0.00 41.02 2.74
6074 7869 8.407457 TGTACGTCATTCAATCTTGATACTTC 57.593 34.615 0.00 0.00 37.00 3.01
6084 7882 8.948853 TTCAGAAATTTGTACGTCATTCAATC 57.051 30.769 0.00 0.00 0.00 2.67
6108 7906 4.322953 CCCAACCTGCATTTAAGAGCATTT 60.323 41.667 4.63 0.24 40.42 2.32
6165 7963 8.571461 AAAGAGCTGAGAATGTAAATCAATCA 57.429 30.769 0.00 0.00 0.00 2.57
6265 8064 4.666512 ACCATTTAGCACACAGATCCTTT 58.333 39.130 0.00 0.00 0.00 3.11
6309 8108 0.104304 GCCCTCAGTATGGTACCACG 59.896 60.000 19.09 6.43 36.16 4.94
6371 8173 7.168135 GTCAACAAAATCAGTTTTAAGCTCCAG 59.832 37.037 0.00 0.00 35.83 3.86
6504 8306 4.970662 TTGCCATTTAGCATGAGAGAAC 57.029 40.909 0.00 0.00 43.64 3.01
6535 8337 4.990426 GGCACCGTTACAAAGACTACTTAA 59.010 41.667 0.00 0.00 35.05 1.85
6854 8661 3.207044 ACTGAGATAACCCACCCTCTT 57.793 47.619 0.00 0.00 0.00 2.85
6855 8662 2.950990 ACTGAGATAACCCACCCTCT 57.049 50.000 0.00 0.00 0.00 3.69
6856 8663 4.031611 AGTTACTGAGATAACCCACCCTC 58.968 47.826 0.00 0.00 35.95 4.30
6860 8667 6.640518 TCAATCAGTTACTGAGATAACCCAC 58.359 40.000 20.12 0.00 44.08 4.61
6948 8755 9.559958 GGTCATGTGTTTATAAGTGAAAGATTG 57.440 33.333 0.00 0.00 0.00 2.67
6967 8774 5.068198 GCAATATGGAATTCACAGGTCATGT 59.932 40.000 7.93 0.00 45.43 3.21
6968 8775 5.508489 GGCAATATGGAATTCACAGGTCATG 60.508 44.000 7.93 0.00 0.00 3.07
7109 8933 2.158957 TCCTGGCAGTTCCATTCGATAC 60.159 50.000 14.43 0.00 45.50 2.24
7137 8961 1.217244 GAGCGTACGGTTCCATGGT 59.783 57.895 22.26 0.00 0.00 3.55
7249 9073 7.607615 AGTACTGACTAAAAGGGAGTACAAA 57.392 36.000 0.00 0.00 40.90 2.83
7331 9155 2.766263 AGGAAGTTGATCATACCTCGCA 59.234 45.455 0.00 0.00 0.00 5.10
7340 9164 5.932619 TCCTTATTCGAGGAAGTTGATCA 57.067 39.130 0.00 0.00 42.75 2.92
7491 9317 7.831193 ACCATTTCTAATCAGCTGAATACAACT 59.169 33.333 22.50 2.15 0.00 3.16
7535 9361 6.324819 CCAAACCAAATAGCACTTCTACATG 58.675 40.000 0.00 0.00 0.00 3.21
7656 9483 6.143551 TCCAGCATGACCCAATATAATCAT 57.856 37.500 0.00 0.00 39.69 2.45
7662 9489 3.072915 TCGAATCCAGCATGACCCAATAT 59.927 43.478 0.00 0.00 39.69 1.28
7785 9612 4.074259 TGATTCAACCATCACAAGTCAGG 58.926 43.478 0.00 0.00 0.00 3.86
7793 9620 0.734889 CCGCCTGATTCAACCATCAC 59.265 55.000 0.00 0.00 0.00 3.06
7865 9771 0.106708 GGCATCGCAGGTCAATAGGA 59.893 55.000 0.00 0.00 0.00 2.94
7868 9774 0.463654 GGTGGCATCGCAGGTCAATA 60.464 55.000 0.00 0.00 0.00 1.90
8006 12534 4.492160 CGGTTCCAGCTCGCGCTA 62.492 66.667 5.56 0.00 46.99 4.26
8021 12549 0.605589 AAAACTTCCTTCGCCTCCGG 60.606 55.000 0.00 0.00 34.56 5.14
8050 12578 5.756195 CATCCACGTTGATGTCCATAAAT 57.244 39.130 18.88 0.00 37.85 1.40
8213 12763 2.613595 GAGTTGCAATGAGTGTCACACA 59.386 45.455 11.40 5.53 36.74 3.72
8219 12769 1.526887 CGTTCGAGTTGCAATGAGTGT 59.473 47.619 0.59 0.00 0.00 3.55
8220 12770 1.136252 CCGTTCGAGTTGCAATGAGTG 60.136 52.381 0.59 0.00 0.00 3.51
8284 12835 2.125673 ACATTTCGTCGAGCGGGG 60.126 61.111 0.00 0.00 41.72 5.73
8332 12884 8.725046 CGAATAATGAAAGAAGCGATACAAAAC 58.275 33.333 0.00 0.00 0.00 2.43
8360 12918 3.830744 ACCAATTGATCCAATGGCATG 57.169 42.857 7.12 0.00 34.04 4.06
8551 13139 4.094442 CCTTTTTCCTTGGTAGTATGCGAC 59.906 45.833 0.00 0.00 0.00 5.19
8557 13145 6.902408 TCTTTGACCTTTTTCCTTGGTAGTA 58.098 36.000 0.00 0.00 33.74 1.82
8567 13155 5.116180 CCTTGGGTTTCTTTGACCTTTTTC 58.884 41.667 0.00 0.00 37.34 2.29
8582 13171 1.460699 GGACCTCTTGCCTTGGGTT 59.539 57.895 0.00 0.00 31.60 4.11
8668 13260 3.644966 TGCCCTTTTACTCCATACCAG 57.355 47.619 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.