Multiple sequence alignment - TraesCS3A01G325900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G325900 chr3A 100.000 4037 0 0 1 4037 571185229 571181193 0.000000e+00 7456
1 TraesCS3A01G325900 chr3A 97.222 576 16 0 1 576 332645597 332645022 0.000000e+00 976
2 TraesCS3A01G325900 chr3A 99.342 152 1 0 3689 3840 571181394 571181243 3.970000e-70 276
3 TraesCS3A01G325900 chr3A 99.342 152 1 0 3836 3987 571181541 571181390 3.970000e-70 276
4 TraesCS3A01G325900 chr3A 82.011 189 27 6 576 761 75570989 75571173 1.940000e-33 154
5 TraesCS3A01G325900 chr3A 87.500 120 15 0 2954 3073 571182147 571182028 5.440000e-29 139
6 TraesCS3A01G325900 chr3A 87.500 120 15 0 3083 3202 571182276 571182157 5.440000e-29 139
7 TraesCS3A01G325900 chr3B 95.115 3009 97 22 846 3843 565274682 565271713 0.000000e+00 4697
8 TraesCS3A01G325900 chr3B 96.535 202 7 0 3836 4037 565271866 565271665 6.470000e-88 335
9 TraesCS3A01G325900 chr3B 93.506 154 10 0 1354 1507 565276760 565276607 3.140000e-56 230
10 TraesCS3A01G325900 chr3B 89.552 134 14 0 942 1075 565276949 565276816 1.930000e-38 171
11 TraesCS3A01G325900 chr3B 87.705 122 12 3 2954 3073 565272474 565272354 5.440000e-29 139
12 TraesCS3A01G325900 chr3D 94.808 3024 100 23 836 3840 433142535 433139550 0.000000e+00 4662
13 TraesCS3A01G325900 chr3D 96.535 202 7 0 3836 4037 433139701 433139500 6.470000e-88 335
14 TraesCS3A01G325900 chr3D 89.167 120 13 0 2954 3073 433140297 433140178 2.510000e-32 150
15 TraesCS3A01G325900 chr3D 88.333 120 14 0 3083 3202 433140426 433140307 1.170000e-30 145
16 TraesCS3A01G325900 chr7A 97.569 576 13 1 1 576 205507143 205506569 0.000000e+00 985
17 TraesCS3A01G325900 chr7A 97.396 576 14 1 1 576 666732681 666733255 0.000000e+00 979
18 TraesCS3A01G325900 chr7A 97.222 576 16 0 1 576 166507883 166508458 0.000000e+00 976
19 TraesCS3A01G325900 chr6A 97.391 575 15 0 1 575 155646285 155645711 0.000000e+00 979
20 TraesCS3A01G325900 chr6A 97.222 576 16 0 1 576 388807387 388807962 0.000000e+00 976
21 TraesCS3A01G325900 chrUn 97.222 576 16 0 1 576 188207078 188207653 0.000000e+00 976
22 TraesCS3A01G325900 chrUn 97.049 576 17 0 1 576 215201235 215201810 0.000000e+00 970
23 TraesCS3A01G325900 chr6D 97.208 573 16 0 1 573 91510980 91511552 0.000000e+00 970
24 TraesCS3A01G325900 chr2D 90.083 121 12 0 1425 1545 539005212 539005092 1.500000e-34 158
25 TraesCS3A01G325900 chr2A 91.358 81 7 0 1287 1367 681484524 681484444 1.190000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G325900 chr3A 571181193 571185229 4036 True 1657.200000 7456 94.736800 1 4037 5 chr3A.!!$R2 4036
1 TraesCS3A01G325900 chr3A 332645022 332645597 575 True 976.000000 976 97.222000 1 576 1 chr3A.!!$R1 575
2 TraesCS3A01G325900 chr3B 565271665 565274682 3017 True 1723.666667 4697 93.118333 846 4037 3 chr3B.!!$R1 3191
3 TraesCS3A01G325900 chr3D 433139500 433142535 3035 True 1323.000000 4662 92.210750 836 4037 4 chr3D.!!$R1 3201
4 TraesCS3A01G325900 chr7A 205506569 205507143 574 True 985.000000 985 97.569000 1 576 1 chr7A.!!$R1 575
5 TraesCS3A01G325900 chr7A 666732681 666733255 574 False 979.000000 979 97.396000 1 576 1 chr7A.!!$F2 575
6 TraesCS3A01G325900 chr7A 166507883 166508458 575 False 976.000000 976 97.222000 1 576 1 chr7A.!!$F1 575
7 TraesCS3A01G325900 chr6A 155645711 155646285 574 True 979.000000 979 97.391000 1 575 1 chr6A.!!$R1 574
8 TraesCS3A01G325900 chr6A 388807387 388807962 575 False 976.000000 976 97.222000 1 576 1 chr6A.!!$F1 575
9 TraesCS3A01G325900 chrUn 188207078 188207653 575 False 976.000000 976 97.222000 1 576 1 chrUn.!!$F1 575
10 TraesCS3A01G325900 chrUn 215201235 215201810 575 False 970.000000 970 97.049000 1 576 1 chrUn.!!$F2 575
11 TraesCS3A01G325900 chr6D 91510980 91511552 572 False 970.000000 970 97.208000 1 573 1 chr6D.!!$F1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 687 0.179184 GGAGCACGAGAGACGACTTC 60.179 60.0 0.0 0.0 45.77 3.01 F
1095 1132 0.105709 CCTCCTCCTCCTCCTCTTCC 60.106 65.0 0.0 0.0 0.00 3.46 F
1101 1138 0.105709 CCTCCTCCTCTTCCTCCTCC 60.106 65.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2244 2284 1.089920 CTCCTTGGGCAGTCATTTCG 58.910 55.0 0.0 0.0 0.0 3.46 R
3006 3046 0.322546 GACCCGCCCAGTTCTTGAAT 60.323 55.0 0.0 0.0 0.0 2.57 R
3103 3143 4.588528 AGCTTCCATTTTCCTAAAGTTGCA 59.411 37.5 0.0 0.0 0.0 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 176 2.435586 GCTGGAGCTGCATCGTGT 60.436 61.111 8.91 0.00 38.21 4.49
406 407 3.483954 GCCTTCTTGCCATGCTCTA 57.516 52.632 0.00 0.00 0.00 2.43
532 533 0.394352 CTCCGTGCCCTTTGCCTTAT 60.394 55.000 0.00 0.00 40.16 1.73
576 577 4.894784 TCTTGAACTTAGCCGATTTCTGT 58.105 39.130 0.00 0.00 0.00 3.41
577 578 6.032956 TCTTGAACTTAGCCGATTTCTGTA 57.967 37.500 0.00 0.00 0.00 2.74
578 579 6.100004 TCTTGAACTTAGCCGATTTCTGTAG 58.900 40.000 0.00 0.00 0.00 2.74
579 580 5.401531 TGAACTTAGCCGATTTCTGTAGT 57.598 39.130 0.00 0.00 0.00 2.73
580 581 5.408356 TGAACTTAGCCGATTTCTGTAGTC 58.592 41.667 0.00 0.00 0.00 2.59
581 582 4.030134 ACTTAGCCGATTTCTGTAGTCG 57.970 45.455 0.00 0.00 35.29 4.18
586 587 2.561733 CGATTTCTGTAGTCGGAGCA 57.438 50.000 0.00 0.00 0.00 4.26
587 588 2.455032 CGATTTCTGTAGTCGGAGCAG 58.545 52.381 0.00 0.00 0.00 4.24
588 589 2.197577 GATTTCTGTAGTCGGAGCAGC 58.802 52.381 0.00 0.00 0.00 5.25
589 590 0.966179 TTTCTGTAGTCGGAGCAGCA 59.034 50.000 0.00 0.00 0.00 4.41
590 591 1.186200 TTCTGTAGTCGGAGCAGCAT 58.814 50.000 0.00 0.00 0.00 3.79
591 592 0.457443 TCTGTAGTCGGAGCAGCATG 59.543 55.000 0.00 0.00 40.87 4.06
592 593 0.529337 CTGTAGTCGGAGCAGCATGG 60.529 60.000 0.00 0.00 35.86 3.66
593 594 1.227380 GTAGTCGGAGCAGCATGGG 60.227 63.158 0.00 0.00 35.86 4.00
594 595 2.434843 TAGTCGGAGCAGCATGGGG 61.435 63.158 0.00 0.00 35.86 4.96
595 596 2.871795 TAGTCGGAGCAGCATGGGGA 62.872 60.000 0.00 0.00 35.86 4.81
596 597 3.473647 TCGGAGCAGCATGGGGAG 61.474 66.667 0.00 0.00 35.86 4.30
597 598 4.559063 CGGAGCAGCATGGGGAGG 62.559 72.222 0.00 0.00 35.86 4.30
598 599 4.891037 GGAGCAGCATGGGGAGGC 62.891 72.222 0.00 0.00 35.86 4.70
616 617 4.539881 GGCGACTCGACGAGGCTC 62.540 72.222 27.25 20.24 35.13 4.70
617 618 4.872485 GCGACTCGACGAGGCTCG 62.872 72.222 33.42 33.42 46.93 5.03
618 619 4.225340 CGACTCGACGAGGCTCGG 62.225 72.222 36.81 22.89 45.59 4.63
619 620 3.878519 GACTCGACGAGGCTCGGG 61.879 72.222 36.81 27.92 45.59 5.14
627 628 4.154347 GAGGCTCGGGGCAGTCAG 62.154 72.222 13.05 0.00 44.01 3.51
628 629 4.704103 AGGCTCGGGGCAGTCAGA 62.704 66.667 13.05 0.00 44.01 3.27
629 630 4.154347 GGCTCGGGGCAGTCAGAG 62.154 72.222 2.81 0.00 44.01 3.35
631 632 3.385384 CTCGGGGCAGTCAGAGCA 61.385 66.667 0.00 0.00 0.00 4.26
632 633 3.368190 CTCGGGGCAGTCAGAGCAG 62.368 68.421 0.00 0.00 0.00 4.24
633 634 3.699894 CGGGGCAGTCAGAGCAGT 61.700 66.667 0.00 0.00 0.00 4.40
634 635 2.046507 GGGGCAGTCAGAGCAGTG 60.047 66.667 0.00 0.00 0.00 3.66
635 636 2.746359 GGGCAGTCAGAGCAGTGT 59.254 61.111 0.00 0.00 0.00 3.55
636 637 1.544825 GGGGCAGTCAGAGCAGTGTA 61.545 60.000 0.00 0.00 0.00 2.90
637 638 0.321671 GGGCAGTCAGAGCAGTGTAA 59.678 55.000 0.00 0.00 0.00 2.41
638 639 1.674221 GGGCAGTCAGAGCAGTGTAAG 60.674 57.143 0.00 0.00 0.00 2.34
639 640 1.674221 GGCAGTCAGAGCAGTGTAAGG 60.674 57.143 0.00 0.00 0.00 2.69
640 641 1.273606 GCAGTCAGAGCAGTGTAAGGA 59.726 52.381 0.00 0.00 0.00 3.36
641 642 2.673610 GCAGTCAGAGCAGTGTAAGGAG 60.674 54.545 0.00 0.00 0.00 3.69
642 643 2.094286 CAGTCAGAGCAGTGTAAGGAGG 60.094 54.545 0.00 0.00 0.00 4.30
643 644 0.898320 TCAGAGCAGTGTAAGGAGGC 59.102 55.000 0.00 0.00 0.00 4.70
644 645 0.610174 CAGAGCAGTGTAAGGAGGCA 59.390 55.000 0.00 0.00 0.00 4.75
645 646 1.002430 CAGAGCAGTGTAAGGAGGCAA 59.998 52.381 0.00 0.00 0.00 4.52
646 647 1.002544 AGAGCAGTGTAAGGAGGCAAC 59.997 52.381 0.00 0.00 0.00 4.17
647 648 0.320771 AGCAGTGTAAGGAGGCAACG 60.321 55.000 0.00 0.00 46.39 4.10
648 649 0.320421 GCAGTGTAAGGAGGCAACGA 60.320 55.000 0.00 0.00 46.39 3.85
649 650 1.429463 CAGTGTAAGGAGGCAACGAC 58.571 55.000 0.00 0.00 46.39 4.34
650 651 1.000955 CAGTGTAAGGAGGCAACGACT 59.999 52.381 0.00 0.00 46.39 4.18
651 652 1.272769 AGTGTAAGGAGGCAACGACTC 59.727 52.381 0.00 0.00 46.39 3.36
652 653 0.242825 TGTAAGGAGGCAACGACTCG 59.757 55.000 0.00 0.00 38.87 4.18
653 654 0.524862 GTAAGGAGGCAACGACTCGA 59.475 55.000 5.20 0.00 38.87 4.04
654 655 0.524862 TAAGGAGGCAACGACTCGAC 59.475 55.000 5.20 0.00 38.87 4.20
655 656 2.473664 AAGGAGGCAACGACTCGACG 62.474 60.000 5.20 0.00 38.87 5.12
656 657 2.504244 GAGGCAACGACTCGACGG 60.504 66.667 5.20 0.00 46.39 4.79
657 658 3.966026 GAGGCAACGACTCGACGGG 62.966 68.421 5.20 0.00 46.39 5.28
658 659 4.047059 GGCAACGACTCGACGGGA 62.047 66.667 0.00 0.00 37.61 5.14
666 667 3.068691 CTCGACGGGAGCTTGGGA 61.069 66.667 0.00 0.00 35.63 4.37
667 668 3.068691 TCGACGGGAGCTTGGGAG 61.069 66.667 0.00 0.00 0.00 4.30
668 669 4.148825 CGACGGGAGCTTGGGAGG 62.149 72.222 0.00 0.00 0.00 4.30
669 670 2.683933 GACGGGAGCTTGGGAGGA 60.684 66.667 0.00 0.00 0.00 3.71
670 671 2.685380 ACGGGAGCTTGGGAGGAG 60.685 66.667 0.00 0.00 0.00 3.69
671 672 4.168291 CGGGAGCTTGGGAGGAGC 62.168 72.222 0.00 0.00 40.43 4.70
672 673 3.011517 GGGAGCTTGGGAGGAGCA 61.012 66.667 0.00 0.00 42.56 4.26
673 674 2.270527 GGAGCTTGGGAGGAGCAC 59.729 66.667 0.00 0.00 42.56 4.40
674 675 2.125350 GAGCTTGGGAGGAGCACG 60.125 66.667 0.00 0.00 42.56 5.34
675 676 2.604686 AGCTTGGGAGGAGCACGA 60.605 61.111 0.00 0.00 42.56 4.35
676 677 2.125350 GCTTGGGAGGAGCACGAG 60.125 66.667 0.00 0.00 39.89 4.18
677 678 2.650116 GCTTGGGAGGAGCACGAGA 61.650 63.158 0.00 0.00 39.89 4.04
678 679 1.515020 CTTGGGAGGAGCACGAGAG 59.485 63.158 0.00 0.00 32.70 3.20
679 680 0.967887 CTTGGGAGGAGCACGAGAGA 60.968 60.000 0.00 0.00 32.70 3.10
680 681 1.251527 TTGGGAGGAGCACGAGAGAC 61.252 60.000 0.00 0.00 0.00 3.36
682 683 1.745864 GGAGGAGCACGAGAGACGA 60.746 63.158 0.00 0.00 45.77 4.20
683 684 1.426223 GAGGAGCACGAGAGACGAC 59.574 63.158 0.00 0.00 45.77 4.34
684 685 1.003112 AGGAGCACGAGAGACGACT 60.003 57.895 0.00 0.00 45.77 4.18
685 686 0.606944 AGGAGCACGAGAGACGACTT 60.607 55.000 0.00 0.00 45.77 3.01
686 687 0.179184 GGAGCACGAGAGACGACTTC 60.179 60.000 0.00 0.00 45.77 3.01
687 688 0.800012 GAGCACGAGAGACGACTTCT 59.200 55.000 0.00 0.00 45.77 2.85
698 699 4.668289 GAGACGACTTCTCTCAAGAATCC 58.332 47.826 1.79 0.00 46.68 3.01
699 700 4.082845 AGACGACTTCTCTCAAGAATCCA 58.917 43.478 0.00 0.00 40.68 3.41
700 701 4.157656 AGACGACTTCTCTCAAGAATCCAG 59.842 45.833 0.00 0.00 40.68 3.86
701 702 4.082845 ACGACTTCTCTCAAGAATCCAGA 58.917 43.478 0.00 0.00 40.68 3.86
702 703 4.709397 ACGACTTCTCTCAAGAATCCAGAT 59.291 41.667 0.00 0.00 40.68 2.90
703 704 5.186797 ACGACTTCTCTCAAGAATCCAGATT 59.813 40.000 0.00 0.00 40.68 2.40
704 705 5.748152 CGACTTCTCTCAAGAATCCAGATTC 59.252 44.000 11.65 11.65 45.66 2.52
719 720 9.915629 GAATCCAGATTCTGTAATATAGTCGTT 57.084 33.333 12.54 0.00 42.85 3.85
720 721 9.698309 AATCCAGATTCTGTAATATAGTCGTTG 57.302 33.333 12.54 0.00 0.00 4.10
721 722 8.234136 TCCAGATTCTGTAATATAGTCGTTGT 57.766 34.615 12.54 0.00 0.00 3.32
722 723 8.692710 TCCAGATTCTGTAATATAGTCGTTGTT 58.307 33.333 12.54 0.00 0.00 2.83
723 724 8.755941 CCAGATTCTGTAATATAGTCGTTGTTG 58.244 37.037 12.54 0.00 0.00 3.33
724 725 8.269424 CAGATTCTGTAATATAGTCGTTGTTGC 58.731 37.037 5.46 0.00 0.00 4.17
725 726 6.563398 TTCTGTAATATAGTCGTTGTTGCG 57.437 37.500 0.00 0.00 0.00 4.85
726 727 5.882553 TCTGTAATATAGTCGTTGTTGCGA 58.117 37.500 0.00 0.00 38.68 5.10
727 728 6.500910 TCTGTAATATAGTCGTTGTTGCGAT 58.499 36.000 0.00 0.00 43.07 4.58
728 729 6.416750 TCTGTAATATAGTCGTTGTTGCGATG 59.583 38.462 0.00 0.00 43.07 3.84
729 730 6.267070 TGTAATATAGTCGTTGTTGCGATGA 58.733 36.000 0.00 0.00 43.07 2.92
730 731 5.890110 AATATAGTCGTTGTTGCGATGAG 57.110 39.130 0.00 0.00 43.07 2.90
731 732 3.503827 ATAGTCGTTGTTGCGATGAGA 57.496 42.857 0.00 0.00 43.07 3.27
732 733 1.702886 AGTCGTTGTTGCGATGAGAG 58.297 50.000 0.00 0.00 43.07 3.20
733 734 1.269723 AGTCGTTGTTGCGATGAGAGA 59.730 47.619 0.00 0.00 43.07 3.10
734 735 2.058798 GTCGTTGTTGCGATGAGAGAA 58.941 47.619 0.00 0.00 43.07 2.87
735 736 2.475111 GTCGTTGTTGCGATGAGAGAAA 59.525 45.455 0.00 0.00 43.07 2.52
736 737 3.123621 GTCGTTGTTGCGATGAGAGAAAT 59.876 43.478 0.00 0.00 43.07 2.17
737 738 3.745975 TCGTTGTTGCGATGAGAGAAATT 59.254 39.130 0.00 0.00 35.83 1.82
738 739 3.842428 CGTTGTTGCGATGAGAGAAATTG 59.158 43.478 0.00 0.00 0.00 2.32
739 740 4.611355 CGTTGTTGCGATGAGAGAAATTGT 60.611 41.667 0.00 0.00 0.00 2.71
740 741 5.389411 CGTTGTTGCGATGAGAGAAATTGTA 60.389 40.000 0.00 0.00 0.00 2.41
741 742 6.370593 GTTGTTGCGATGAGAGAAATTGTAA 58.629 36.000 0.00 0.00 0.00 2.41
742 743 5.927030 TGTTGCGATGAGAGAAATTGTAAC 58.073 37.500 0.00 0.00 35.65 2.50
743 744 5.468409 TGTTGCGATGAGAGAAATTGTAACA 59.532 36.000 3.96 3.96 39.93 2.41
744 745 6.017523 TGTTGCGATGAGAGAAATTGTAACAA 60.018 34.615 5.24 0.00 39.55 2.83
745 746 6.741992 TGCGATGAGAGAAATTGTAACAAT 57.258 33.333 0.00 0.00 0.00 2.71
746 747 6.545508 TGCGATGAGAGAAATTGTAACAATG 58.454 36.000 0.00 0.00 0.00 2.82
747 748 6.371271 TGCGATGAGAGAAATTGTAACAATGA 59.629 34.615 0.00 0.00 0.00 2.57
748 749 6.904011 GCGATGAGAGAAATTGTAACAATGAG 59.096 38.462 0.00 0.00 0.00 2.90
749 750 6.904011 CGATGAGAGAAATTGTAACAATGAGC 59.096 38.462 0.00 0.00 0.00 4.26
750 751 6.500684 TGAGAGAAATTGTAACAATGAGCC 57.499 37.500 0.00 0.00 0.00 4.70
751 752 6.003326 TGAGAGAAATTGTAACAATGAGCCA 58.997 36.000 0.00 0.00 0.00 4.75
752 753 6.660521 TGAGAGAAATTGTAACAATGAGCCAT 59.339 34.615 0.00 0.00 0.00 4.40
753 754 7.177216 TGAGAGAAATTGTAACAATGAGCCATT 59.823 33.333 0.00 0.00 34.04 3.16
754 755 7.899973 AGAGAAATTGTAACAATGAGCCATTT 58.100 30.769 0.00 0.00 31.05 2.32
755 756 7.816031 AGAGAAATTGTAACAATGAGCCATTTG 59.184 33.333 0.00 0.00 31.05 2.32
756 757 6.369615 AGAAATTGTAACAATGAGCCATTTGC 59.630 34.615 0.00 0.00 41.71 3.68
757 758 4.597404 TTGTAACAATGAGCCATTTGCA 57.403 36.364 0.00 0.00 44.83 4.08
758 759 4.597404 TGTAACAATGAGCCATTTGCAA 57.403 36.364 0.00 0.00 44.83 4.08
759 760 4.953667 TGTAACAATGAGCCATTTGCAAA 58.046 34.783 15.44 15.44 44.83 3.68
760 761 5.363101 TGTAACAATGAGCCATTTGCAAAA 58.637 33.333 17.19 0.00 44.83 2.44
761 762 5.996513 TGTAACAATGAGCCATTTGCAAAAT 59.003 32.000 17.19 0.53 44.83 1.82
762 763 5.365403 AACAATGAGCCATTTGCAAAATG 57.635 34.783 17.19 14.02 44.83 2.32
763 764 4.643463 ACAATGAGCCATTTGCAAAATGA 58.357 34.783 17.19 0.00 44.83 2.57
764 765 5.250200 ACAATGAGCCATTTGCAAAATGAT 58.750 33.333 17.19 8.89 44.83 2.45
765 766 5.123186 ACAATGAGCCATTTGCAAAATGATG 59.877 36.000 17.19 9.69 44.83 3.07
766 767 4.538746 TGAGCCATTTGCAAAATGATGA 57.461 36.364 17.19 0.00 44.83 2.92
767 768 5.092554 TGAGCCATTTGCAAAATGATGAT 57.907 34.783 17.19 1.68 44.83 2.45
768 769 6.223351 TGAGCCATTTGCAAAATGATGATA 57.777 33.333 17.19 0.00 44.83 2.15
769 770 6.641474 TGAGCCATTTGCAAAATGATGATAA 58.359 32.000 17.19 0.00 44.83 1.75
770 771 7.276658 TGAGCCATTTGCAAAATGATGATAAT 58.723 30.769 17.19 0.00 44.83 1.28
771 772 7.225734 TGAGCCATTTGCAAAATGATGATAATG 59.774 33.333 17.19 5.57 44.83 1.90
772 773 6.485313 AGCCATTTGCAAAATGATGATAATGG 59.515 34.615 17.19 15.28 44.83 3.16
773 774 6.293735 GCCATTTGCAAAATGATGATAATGGG 60.294 38.462 17.19 1.93 40.01 4.00
774 775 6.205853 CCATTTGCAAAATGATGATAATGGGG 59.794 38.462 17.19 0.00 38.17 4.96
775 776 4.339872 TGCAAAATGATGATAATGGGGC 57.660 40.909 0.00 0.00 0.00 5.80
776 777 3.710165 TGCAAAATGATGATAATGGGGCA 59.290 39.130 0.00 0.00 0.00 5.36
777 778 4.060205 GCAAAATGATGATAATGGGGCAC 58.940 43.478 0.00 0.00 0.00 5.01
778 779 4.300803 CAAAATGATGATAATGGGGCACG 58.699 43.478 0.00 0.00 0.00 5.34
779 780 2.957402 ATGATGATAATGGGGCACGT 57.043 45.000 0.00 0.00 0.00 4.49
780 781 1.965935 TGATGATAATGGGGCACGTG 58.034 50.000 12.28 12.28 0.00 4.49
781 782 1.238439 GATGATAATGGGGCACGTGG 58.762 55.000 18.88 0.00 0.00 4.94
782 783 0.823356 ATGATAATGGGGCACGTGGC 60.823 55.000 32.17 32.17 43.74 5.01
783 784 2.515991 ATAATGGGGCACGTGGCG 60.516 61.111 32.35 0.90 46.16 5.69
784 785 3.338275 ATAATGGGGCACGTGGCGT 62.338 57.895 32.35 19.62 46.16 5.68
785 786 1.973816 ATAATGGGGCACGTGGCGTA 61.974 55.000 32.35 24.30 46.16 4.42
786 787 2.855880 TAATGGGGCACGTGGCGTAC 62.856 60.000 32.35 24.84 46.16 3.67
791 792 4.367023 GCACGTGGCGTACAGGGA 62.367 66.667 18.88 0.00 38.32 4.20
792 793 2.577059 CACGTGGCGTACAGGGAT 59.423 61.111 7.95 0.00 38.32 3.85
793 794 1.809619 CACGTGGCGTACAGGGATG 60.810 63.158 7.95 0.00 38.32 3.51
794 795 2.202878 CGTGGCGTACAGGGATGG 60.203 66.667 0.00 0.00 0.00 3.51
795 796 2.513897 GTGGCGTACAGGGATGGC 60.514 66.667 0.00 0.00 0.00 4.40
796 797 4.155733 TGGCGTACAGGGATGGCG 62.156 66.667 0.00 0.00 33.69 5.69
797 798 3.845259 GGCGTACAGGGATGGCGA 61.845 66.667 0.00 0.00 0.00 5.54
798 799 2.585247 GCGTACAGGGATGGCGAC 60.585 66.667 0.00 0.00 0.00 5.19
812 813 3.680786 CGACAGACACGGGGCTGA 61.681 66.667 31.51 0.00 36.07 4.26
813 814 2.262915 GACAGACACGGGGCTGAG 59.737 66.667 31.51 0.25 36.07 3.35
814 815 2.203640 ACAGACACGGGGCTGAGA 60.204 61.111 31.51 0.00 36.07 3.27
815 816 1.608717 GACAGACACGGGGCTGAGAT 61.609 60.000 31.51 4.01 36.07 2.75
816 817 1.142748 CAGACACGGGGCTGAGATC 59.857 63.158 18.22 0.00 34.06 2.75
817 818 2.060980 AGACACGGGGCTGAGATCC 61.061 63.158 0.00 0.00 0.00 3.36
819 820 4.899239 CACGGGGCTGAGATCCGC 62.899 72.222 12.51 0.00 46.87 5.54
821 822 4.598894 CGGGGCTGAGATCCGCAG 62.599 72.222 8.44 8.44 37.25 5.18
834 835 3.352447 CCGCAGGCGATCTATATGG 57.648 57.895 16.21 0.00 46.14 2.74
835 836 0.532573 CCGCAGGCGATCTATATGGT 59.467 55.000 16.21 0.00 46.14 3.55
836 837 1.066858 CCGCAGGCGATCTATATGGTT 60.067 52.381 16.21 0.00 46.14 3.67
837 838 2.612972 CCGCAGGCGATCTATATGGTTT 60.613 50.000 16.21 0.00 46.14 3.27
838 839 3.067106 CGCAGGCGATCTATATGGTTTT 58.933 45.455 8.15 0.00 42.83 2.43
839 840 3.498397 CGCAGGCGATCTATATGGTTTTT 59.502 43.478 8.15 0.00 42.83 1.94
840 841 4.377431 CGCAGGCGATCTATATGGTTTTTC 60.377 45.833 8.15 0.00 42.83 2.29
841 842 4.515191 GCAGGCGATCTATATGGTTTTTCA 59.485 41.667 0.00 0.00 0.00 2.69
846 847 7.973944 AGGCGATCTATATGGTTTTTCAAAAAC 59.026 33.333 16.20 16.20 36.16 2.43
865 867 7.701924 TCAAAAACAAATTGTCAGACTGATGTC 59.298 33.333 8.73 0.00 43.22 3.06
870 872 2.438868 TGTCAGACTGATGTCCAACG 57.561 50.000 8.73 0.00 43.91 4.10
895 901 4.493547 TGTTGCAAAACTGACTCCAAAAG 58.506 39.130 0.00 0.00 0.00 2.27
896 902 4.219507 TGTTGCAAAACTGACTCCAAAAGA 59.780 37.500 0.00 0.00 0.00 2.52
979 992 1.222115 GCAAACGCTCGAACACCTCT 61.222 55.000 0.00 0.00 0.00 3.69
988 1001 1.274167 TCGAACACCTCTACGGCAAAT 59.726 47.619 0.00 0.00 35.61 2.32
1053 1066 0.336392 TGCTCTCTCTGCCCCTAAGA 59.664 55.000 0.00 0.00 0.00 2.10
1084 1121 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1085 1122 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1086 1123 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1087 1124 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1088 1125 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1089 1126 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1090 1127 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1091 1128 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1092 1129 0.998945 CCTCCTCCTCCTCCTCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
1093 1130 0.933700 CTCCTCCTCCTCCTCCTCTT 59.066 60.000 0.00 0.00 0.00 2.85
1094 1131 0.930726 TCCTCCTCCTCCTCCTCTTC 59.069 60.000 0.00 0.00 0.00 2.87
1095 1132 0.105709 CCTCCTCCTCCTCCTCTTCC 60.106 65.000 0.00 0.00 0.00 3.46
1096 1133 0.933700 CTCCTCCTCCTCCTCTTCCT 59.066 60.000 0.00 0.00 0.00 3.36
1097 1134 0.930726 TCCTCCTCCTCCTCTTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
1098 1135 0.105709 CCTCCTCCTCCTCTTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
1099 1136 0.933700 CTCCTCCTCCTCTTCCTCCT 59.066 60.000 0.00 0.00 0.00 3.69
1100 1137 0.930726 TCCTCCTCCTCTTCCTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
1101 1138 0.105709 CCTCCTCCTCTTCCTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
1102 1139 0.467290 CTCCTCCTCTTCCTCCTCCG 60.467 65.000 0.00 0.00 0.00 4.63
1103 1140 1.456705 CCTCCTCTTCCTCCTCCGG 60.457 68.421 0.00 0.00 0.00 5.14
1126 1163 3.480133 CCCACGAGATCCCCACCC 61.480 72.222 0.00 0.00 0.00 4.61
1131 1168 0.861155 ACGAGATCCCCACCCTCTAT 59.139 55.000 0.00 0.00 0.00 1.98
1201 1238 2.034066 CGCCACAACCACATCCCT 59.966 61.111 0.00 0.00 0.00 4.20
1203 1240 1.074775 GCCACAACCACATCCCTCA 59.925 57.895 0.00 0.00 0.00 3.86
1208 1248 1.537889 AACCACATCCCTCACCGGA 60.538 57.895 9.46 0.00 36.02 5.14
1605 1645 1.069935 GGGCCTTCCGCTGATAGAC 59.930 63.158 0.84 0.00 37.74 2.59
1623 1663 4.662961 CTCACCCGCGCTGACACA 62.663 66.667 5.56 0.00 0.00 3.72
1827 1867 2.351276 GTTGGGGTGTCGCCAGAT 59.649 61.111 4.48 0.00 46.75 2.90
1851 1891 2.430465 GAGAGCTTTGGACATCTTGCA 58.570 47.619 0.00 0.00 0.00 4.08
1986 2026 2.627515 AGTCTTGCAGCTTTGAGTCA 57.372 45.000 0.00 0.00 0.00 3.41
1992 2032 1.949525 TGCAGCTTTGAGTCAGTTTCC 59.050 47.619 0.00 0.00 0.00 3.13
1995 2035 3.470709 CAGCTTTGAGTCAGTTTCCTCA 58.529 45.455 0.00 0.00 35.97 3.86
2061 2101 6.436261 CAATCCATTTGATGATGAGTGCTAC 58.564 40.000 0.00 0.00 37.53 3.58
2064 2104 6.634268 ATCCATTTGATGATGAGTGCTACACT 60.634 38.462 0.00 0.00 38.82 3.55
2107 2147 5.310409 TGATAATGGAAGGATCAGGGAAC 57.690 43.478 0.00 0.00 0.00 3.62
2144 2184 4.090761 TCCAAGCACAAGAGATTGAGTT 57.909 40.909 0.00 0.00 0.00 3.01
2159 2199 3.921119 TGAGTTGACACATCAATTGCC 57.079 42.857 0.00 0.00 46.43 4.52
2160 2200 3.220940 TGAGTTGACACATCAATTGCCA 58.779 40.909 0.00 0.00 46.43 4.92
2244 2284 6.371548 TGAACAAGGCTCATAACATACTTGAC 59.628 38.462 8.96 4.06 38.80 3.18
2287 2327 4.570933 CCTCTGTGGGGCTAGCTATATACT 60.571 50.000 15.72 0.00 0.00 2.12
2559 2599 2.891580 GCTCATGGCATCATTCTTGGAT 59.108 45.455 0.00 0.00 41.35 3.41
3006 3046 2.408271 AAATGGAAGCTCTGATCGCA 57.592 45.000 0.00 0.00 0.00 5.10
3158 3199 6.769512 TGTTAAAGAACTGAGCTGGTCTTAT 58.230 36.000 4.88 0.03 36.45 1.73
3355 3397 1.337167 GCTGGTGCATTTTTGTCCTCC 60.337 52.381 0.00 0.00 39.41 4.30
3416 3458 6.089150 GGCTAACTTGACTTTGTACTACTTCG 59.911 42.308 0.00 0.00 0.00 3.79
3498 3545 6.008960 AGTTTCTCCTGAAATGCTTCTCATT 58.991 36.000 0.00 0.00 46.82 2.57
3506 3553 5.972935 TGAAATGCTTCTCATTGAATGCAT 58.027 33.333 0.00 12.13 44.23 3.96
3568 3615 3.567576 TTATGTTCGTTCGGTCCGTTA 57.432 42.857 11.88 0.00 0.00 3.18
3658 3706 2.952310 GTTATTGAGCCCCTGCCTAAAG 59.048 50.000 0.00 0.00 38.69 1.85
3772 3820 8.193953 ACCTGAAATCAGAATTGGTTAAACAT 57.806 30.769 11.94 0.00 46.59 2.71
3816 3864 4.637483 TTCAAACTTGAAGTTGCCAGAG 57.363 40.909 11.83 0.00 41.88 3.35
3817 3865 3.620488 TCAAACTTGAAGTTGCCAGAGT 58.380 40.909 11.83 0.00 38.66 3.24
3818 3866 4.016444 TCAAACTTGAAGTTGCCAGAGTT 58.984 39.130 11.83 0.00 38.66 3.01
3819 3867 4.107622 CAAACTTGAAGTTGCCAGAGTTG 58.892 43.478 11.83 0.00 38.66 3.16
3820 3868 3.281727 ACTTGAAGTTGCCAGAGTTGA 57.718 42.857 0.00 0.00 0.00 3.18
3821 3869 2.945668 ACTTGAAGTTGCCAGAGTTGAC 59.054 45.455 0.00 0.00 0.00 3.18
3822 3870 2.708216 TGAAGTTGCCAGAGTTGACA 57.292 45.000 0.00 0.00 0.00 3.58
3823 3871 2.997980 TGAAGTTGCCAGAGTTGACAA 58.002 42.857 0.00 0.00 0.00 3.18
3824 3872 3.351740 TGAAGTTGCCAGAGTTGACAAA 58.648 40.909 0.00 0.00 28.11 2.83
3825 3873 3.761218 TGAAGTTGCCAGAGTTGACAAAA 59.239 39.130 0.00 0.00 28.11 2.44
3826 3874 3.782889 AGTTGCCAGAGTTGACAAAAC 57.217 42.857 0.00 0.00 28.11 2.43
3827 3875 3.088532 AGTTGCCAGAGTTGACAAAACA 58.911 40.909 0.00 0.00 28.11 2.83
3828 3876 3.119495 AGTTGCCAGAGTTGACAAAACAC 60.119 43.478 0.00 0.00 28.11 3.32
3829 3877 1.748493 TGCCAGAGTTGACAAAACACC 59.252 47.619 0.00 0.00 0.00 4.16
3830 3878 1.748493 GCCAGAGTTGACAAAACACCA 59.252 47.619 0.00 0.00 0.00 4.17
3831 3879 2.479560 GCCAGAGTTGACAAAACACCAC 60.480 50.000 0.00 0.00 0.00 4.16
3832 3880 2.752354 CCAGAGTTGACAAAACACCACA 59.248 45.455 0.00 0.00 0.00 4.17
3833 3881 3.192422 CCAGAGTTGACAAAACACCACAA 59.808 43.478 0.00 0.00 0.00 3.33
3834 3882 4.142182 CCAGAGTTGACAAAACACCACAAT 60.142 41.667 0.00 0.00 0.00 2.71
3835 3883 5.067153 CCAGAGTTGACAAAACACCACAATA 59.933 40.000 0.00 0.00 0.00 1.90
3836 3884 6.239008 CCAGAGTTGACAAAACACCACAATAT 60.239 38.462 0.00 0.00 0.00 1.28
3837 3885 7.202526 CAGAGTTGACAAAACACCACAATATT 58.797 34.615 0.00 0.00 0.00 1.28
3838 3886 8.349245 CAGAGTTGACAAAACACCACAATATTA 58.651 33.333 0.00 0.00 0.00 0.98
3839 3887 8.908903 AGAGTTGACAAAACACCACAATATTAA 58.091 29.630 0.00 0.00 0.00 1.40
3840 3888 9.180678 GAGTTGACAAAACACCACAATATTAAG 57.819 33.333 0.00 0.00 0.00 1.85
3841 3889 8.908903 AGTTGACAAAACACCACAATATTAAGA 58.091 29.630 0.00 0.00 0.00 2.10
3842 3890 9.522804 GTTGACAAAACACCACAATATTAAGAA 57.477 29.630 0.00 0.00 0.00 2.52
3843 3891 9.522804 TTGACAAAACACCACAATATTAAGAAC 57.477 29.630 0.00 0.00 0.00 3.01
3844 3892 8.908903 TGACAAAACACCACAATATTAAGAACT 58.091 29.630 0.00 0.00 0.00 3.01
3845 3893 9.180678 GACAAAACACCACAATATTAAGAACTG 57.819 33.333 0.00 0.00 0.00 3.16
3846 3894 8.141268 ACAAAACACCACAATATTAAGAACTGG 58.859 33.333 0.00 0.00 0.00 4.00
3847 3895 6.834168 AACACCACAATATTAAGAACTGGG 57.166 37.500 0.00 0.00 0.00 4.45
3848 3896 5.261216 ACACCACAATATTAAGAACTGGGG 58.739 41.667 3.01 3.01 36.59 4.96
3849 3897 5.222254 ACACCACAATATTAAGAACTGGGGT 60.222 40.000 4.13 4.13 44.72 4.95
3850 3898 5.357032 CACCACAATATTAAGAACTGGGGTC 59.643 44.000 6.52 0.00 41.93 4.46
3851 3899 5.253096 ACCACAATATTAAGAACTGGGGTCT 59.747 40.000 4.13 0.00 39.68 3.85
3852 3900 5.823045 CCACAATATTAAGAACTGGGGTCTC 59.177 44.000 0.00 0.00 0.00 3.36
3853 3901 5.823045 CACAATATTAAGAACTGGGGTCTCC 59.177 44.000 0.00 0.00 0.00 3.71
3863 3911 2.901042 GGGTCTCCCTTAGTGCGG 59.099 66.667 0.00 0.00 41.34 5.69
3864 3912 1.684734 GGGTCTCCCTTAGTGCGGA 60.685 63.158 0.00 0.00 41.34 5.54
3865 3913 1.262640 GGGTCTCCCTTAGTGCGGAA 61.263 60.000 0.00 0.00 41.34 4.30
3866 3914 0.611714 GGTCTCCCTTAGTGCGGAAA 59.388 55.000 0.00 0.00 0.00 3.13
3867 3915 1.002773 GGTCTCCCTTAGTGCGGAAAA 59.997 52.381 0.00 0.00 0.00 2.29
3868 3916 2.074576 GTCTCCCTTAGTGCGGAAAAC 58.925 52.381 0.00 0.00 0.00 2.43
3870 3918 0.320946 TCCCTTAGTGCGGAAAACGG 60.321 55.000 0.00 0.00 44.51 4.44
3871 3919 1.303091 CCCTTAGTGCGGAAAACGGG 61.303 60.000 0.00 0.00 44.51 5.28
3872 3920 0.320946 CCTTAGTGCGGAAAACGGGA 60.321 55.000 0.00 0.00 44.51 5.14
3873 3921 1.515081 CTTAGTGCGGAAAACGGGAA 58.485 50.000 0.00 0.00 44.51 3.97
3874 3922 1.874872 CTTAGTGCGGAAAACGGGAAA 59.125 47.619 0.00 0.00 44.51 3.13
3875 3923 1.964552 TAGTGCGGAAAACGGGAAAA 58.035 45.000 0.00 0.00 44.51 2.29
3876 3924 0.666374 AGTGCGGAAAACGGGAAAAG 59.334 50.000 0.00 0.00 44.51 2.27
3877 3925 0.382873 GTGCGGAAAACGGGAAAAGT 59.617 50.000 0.00 0.00 44.51 2.66
3878 3926 0.382515 TGCGGAAAACGGGAAAAGTG 59.617 50.000 0.00 0.00 44.51 3.16
3879 3927 0.664224 GCGGAAAACGGGAAAAGTGA 59.336 50.000 0.00 0.00 44.51 3.41
3880 3928 1.065851 GCGGAAAACGGGAAAAGTGAA 59.934 47.619 0.00 0.00 44.51 3.18
3881 3929 2.857104 GCGGAAAACGGGAAAAGTGAAG 60.857 50.000 0.00 0.00 44.51 3.02
3882 3930 2.287368 CGGAAAACGGGAAAAGTGAAGG 60.287 50.000 0.00 0.00 39.42 3.46
3883 3931 2.545113 GGAAAACGGGAAAAGTGAAGGC 60.545 50.000 0.00 0.00 0.00 4.35
3884 3932 1.770294 AAACGGGAAAAGTGAAGGCA 58.230 45.000 0.00 0.00 0.00 4.75
3885 3933 1.318576 AACGGGAAAAGTGAAGGCAG 58.681 50.000 0.00 0.00 0.00 4.85
3886 3934 0.537371 ACGGGAAAAGTGAAGGCAGG 60.537 55.000 0.00 0.00 0.00 4.85
3887 3935 0.250727 CGGGAAAAGTGAAGGCAGGA 60.251 55.000 0.00 0.00 0.00 3.86
3888 3936 1.817740 CGGGAAAAGTGAAGGCAGGAA 60.818 52.381 0.00 0.00 0.00 3.36
3889 3937 2.529632 GGGAAAAGTGAAGGCAGGAAT 58.470 47.619 0.00 0.00 0.00 3.01
3890 3938 3.697166 GGGAAAAGTGAAGGCAGGAATA 58.303 45.455 0.00 0.00 0.00 1.75
3891 3939 4.086457 GGGAAAAGTGAAGGCAGGAATAA 58.914 43.478 0.00 0.00 0.00 1.40
3892 3940 4.082190 GGGAAAAGTGAAGGCAGGAATAAC 60.082 45.833 0.00 0.00 0.00 1.89
3893 3941 4.767409 GGAAAAGTGAAGGCAGGAATAACT 59.233 41.667 0.00 0.00 0.00 2.24
3894 3942 5.944007 GGAAAAGTGAAGGCAGGAATAACTA 59.056 40.000 0.00 0.00 0.00 2.24
3895 3943 6.127980 GGAAAAGTGAAGGCAGGAATAACTAC 60.128 42.308 0.00 0.00 0.00 2.73
3896 3944 4.489306 AGTGAAGGCAGGAATAACTACC 57.511 45.455 0.00 0.00 0.00 3.18
3897 3945 4.104831 AGTGAAGGCAGGAATAACTACCT 58.895 43.478 0.00 0.00 36.92 3.08
3910 3958 9.401058 AGGAATAACTACCTGAAATCAGAATTG 57.599 33.333 11.94 3.86 46.59 2.32
3911 3959 8.624776 GGAATAACTACCTGAAATCAGAATTGG 58.375 37.037 11.94 0.00 46.59 3.16
3912 3960 9.178758 GAATAACTACCTGAAATCAGAATTGGT 57.821 33.333 11.94 4.49 46.59 3.67
3913 3961 9.533831 AATAACTACCTGAAATCAGAATTGGTT 57.466 29.630 11.94 11.17 46.59 3.67
3915 3963 8.934023 AACTACCTGAAATCAGAATTGGTTAA 57.066 30.769 11.94 0.00 46.59 2.01
3916 3964 8.934023 ACTACCTGAAATCAGAATTGGTTAAA 57.066 30.769 11.94 0.00 46.59 1.52
3917 3965 8.793592 ACTACCTGAAATCAGAATTGGTTAAAC 58.206 33.333 11.94 0.00 46.59 2.01
3918 3966 7.595819 ACCTGAAATCAGAATTGGTTAAACA 57.404 32.000 11.94 0.00 46.59 2.83
3919 3967 8.193953 ACCTGAAATCAGAATTGGTTAAACAT 57.806 30.769 11.94 0.00 46.59 2.71
3920 3968 8.306761 ACCTGAAATCAGAATTGGTTAAACATC 58.693 33.333 11.94 0.00 46.59 3.06
3921 3969 7.761249 CCTGAAATCAGAATTGGTTAAACATCC 59.239 37.037 11.94 0.00 46.59 3.51
3922 3970 8.421249 TGAAATCAGAATTGGTTAAACATCCT 57.579 30.769 0.00 0.00 0.00 3.24
3923 3971 8.306038 TGAAATCAGAATTGGTTAAACATCCTG 58.694 33.333 0.00 2.67 0.00 3.86
3924 3972 8.421249 AAATCAGAATTGGTTAAACATCCTGA 57.579 30.769 16.93 16.93 0.00 3.86
3925 3973 8.599624 AATCAGAATTGGTTAAACATCCTGAT 57.400 30.769 18.95 18.95 0.00 2.90
3926 3974 9.699410 AATCAGAATTGGTTAAACATCCTGATA 57.301 29.630 22.23 6.99 0.00 2.15
3927 3975 9.872684 ATCAGAATTGGTTAAACATCCTGATAT 57.127 29.630 21.33 8.35 0.00 1.63
3928 3976 9.699410 TCAGAATTGGTTAAACATCCTGATATT 57.301 29.630 12.92 1.19 0.00 1.28
4033 4081 3.173668 TGTGAAGCATATACGGGTCAC 57.826 47.619 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 1.066143 ACATTCCTGCACTTAGTCGGG 60.066 52.381 4.12 4.12 0.00 5.14
137 138 7.161773 CAGCTTCCTTCTGGATTTATTTTGA 57.838 36.000 0.00 0.00 42.81 2.69
175 176 1.144276 TTGTTGCGTTGGAGGTCGA 59.856 52.632 0.00 0.00 0.00 4.20
406 407 5.333199 AGGAACTGTAGCAAGTGGCTTGT 62.333 47.826 0.00 0.00 46.92 3.16
532 533 6.078664 AGAAGAGTTGGTCTAAGAAGAAGGA 58.921 40.000 0.00 0.00 32.65 3.36
576 577 2.434843 CCCCATGCTGCTCCGACTA 61.435 63.158 0.00 0.00 0.00 2.59
577 578 3.790437 CCCCATGCTGCTCCGACT 61.790 66.667 0.00 0.00 0.00 4.18
578 579 3.746949 CTCCCCATGCTGCTCCGAC 62.747 68.421 0.00 0.00 0.00 4.79
579 580 3.473647 CTCCCCATGCTGCTCCGA 61.474 66.667 0.00 0.00 0.00 4.55
580 581 4.559063 CCTCCCCATGCTGCTCCG 62.559 72.222 0.00 0.00 0.00 4.63
581 582 4.891037 GCCTCCCCATGCTGCTCC 62.891 72.222 0.00 0.00 0.00 4.70
599 600 4.539881 GAGCCTCGTCGAGTCGCC 62.540 72.222 20.37 8.39 0.00 5.54
600 601 4.872485 CGAGCCTCGTCGAGTCGC 62.872 72.222 20.37 16.77 42.85 5.19
601 602 4.225340 CCGAGCCTCGTCGAGTCG 62.225 72.222 21.79 21.79 42.85 4.18
602 603 3.878519 CCCGAGCCTCGTCGAGTC 61.879 72.222 20.37 8.45 42.85 3.36
610 611 4.154347 CTGACTGCCCCGAGCCTC 62.154 72.222 0.00 0.00 42.71 4.70
611 612 4.704103 TCTGACTGCCCCGAGCCT 62.704 66.667 0.00 0.00 42.71 4.58
612 613 4.154347 CTCTGACTGCCCCGAGCC 62.154 72.222 0.00 0.00 42.71 4.70
613 614 4.828925 GCTCTGACTGCCCCGAGC 62.829 72.222 0.00 0.00 41.60 5.03
614 615 3.368190 CTGCTCTGACTGCCCCGAG 62.368 68.421 0.00 0.00 0.00 4.63
615 616 3.385384 CTGCTCTGACTGCCCCGA 61.385 66.667 0.00 0.00 0.00 5.14
616 617 3.699894 ACTGCTCTGACTGCCCCG 61.700 66.667 0.00 0.00 0.00 5.73
617 618 1.544825 TACACTGCTCTGACTGCCCC 61.545 60.000 0.00 0.00 0.00 5.80
618 619 0.321671 TTACACTGCTCTGACTGCCC 59.678 55.000 0.00 0.00 0.00 5.36
619 620 1.674221 CCTTACACTGCTCTGACTGCC 60.674 57.143 0.00 0.00 0.00 4.85
620 621 1.273606 TCCTTACACTGCTCTGACTGC 59.726 52.381 0.00 0.00 0.00 4.40
621 622 2.094286 CCTCCTTACACTGCTCTGACTG 60.094 54.545 0.00 0.00 0.00 3.51
622 623 2.175202 CCTCCTTACACTGCTCTGACT 58.825 52.381 0.00 0.00 0.00 3.41
623 624 1.404851 GCCTCCTTACACTGCTCTGAC 60.405 57.143 0.00 0.00 0.00 3.51
624 625 0.898320 GCCTCCTTACACTGCTCTGA 59.102 55.000 0.00 0.00 0.00 3.27
625 626 0.610174 TGCCTCCTTACACTGCTCTG 59.390 55.000 0.00 0.00 0.00 3.35
626 627 1.002544 GTTGCCTCCTTACACTGCTCT 59.997 52.381 0.00 0.00 0.00 4.09
627 628 1.443802 GTTGCCTCCTTACACTGCTC 58.556 55.000 0.00 0.00 0.00 4.26
628 629 0.320771 CGTTGCCTCCTTACACTGCT 60.321 55.000 0.00 0.00 0.00 4.24
629 630 0.320421 TCGTTGCCTCCTTACACTGC 60.320 55.000 0.00 0.00 0.00 4.40
630 631 1.000955 AGTCGTTGCCTCCTTACACTG 59.999 52.381 0.00 0.00 0.00 3.66
631 632 1.272769 GAGTCGTTGCCTCCTTACACT 59.727 52.381 0.00 0.00 0.00 3.55
632 633 1.711206 GAGTCGTTGCCTCCTTACAC 58.289 55.000 0.00 0.00 0.00 2.90
633 634 0.242825 CGAGTCGTTGCCTCCTTACA 59.757 55.000 3.82 0.00 0.00 2.41
634 635 0.524862 TCGAGTCGTTGCCTCCTTAC 59.475 55.000 13.12 0.00 0.00 2.34
635 636 0.524862 GTCGAGTCGTTGCCTCCTTA 59.475 55.000 13.12 0.00 0.00 2.69
636 637 1.289380 GTCGAGTCGTTGCCTCCTT 59.711 57.895 13.12 0.00 0.00 3.36
637 638 2.963371 GTCGAGTCGTTGCCTCCT 59.037 61.111 13.12 0.00 0.00 3.69
638 639 2.504244 CGTCGAGTCGTTGCCTCC 60.504 66.667 13.12 0.00 0.00 4.30
639 640 2.504244 CCGTCGAGTCGTTGCCTC 60.504 66.667 13.12 0.00 0.00 4.70
640 641 4.052229 CCCGTCGAGTCGTTGCCT 62.052 66.667 13.12 0.00 0.00 4.75
641 642 3.966026 CTCCCGTCGAGTCGTTGCC 62.966 68.421 13.12 0.00 33.51 4.52
642 643 2.504244 CTCCCGTCGAGTCGTTGC 60.504 66.667 13.12 3.62 33.51 4.17
643 644 2.473664 AAGCTCCCGTCGAGTCGTTG 62.474 60.000 13.12 6.12 41.10 4.10
644 645 2.266627 AAGCTCCCGTCGAGTCGTT 61.267 57.895 13.12 0.00 41.10 3.85
645 646 2.672307 AAGCTCCCGTCGAGTCGT 60.672 61.111 13.12 0.00 41.10 4.34
646 647 2.202492 CAAGCTCCCGTCGAGTCG 60.202 66.667 6.09 6.09 41.10 4.18
647 648 2.182030 CCAAGCTCCCGTCGAGTC 59.818 66.667 0.00 0.00 41.10 3.36
648 649 3.382832 CCCAAGCTCCCGTCGAGT 61.383 66.667 0.00 0.00 41.10 4.18
649 650 3.068691 TCCCAAGCTCCCGTCGAG 61.069 66.667 0.00 0.00 42.04 4.04
650 651 3.068691 CTCCCAAGCTCCCGTCGA 61.069 66.667 0.00 0.00 0.00 4.20
651 652 4.148825 CCTCCCAAGCTCCCGTCG 62.149 72.222 0.00 0.00 0.00 5.12
652 653 2.683933 TCCTCCCAAGCTCCCGTC 60.684 66.667 0.00 0.00 0.00 4.79
653 654 2.685380 CTCCTCCCAAGCTCCCGT 60.685 66.667 0.00 0.00 0.00 5.28
654 655 4.168291 GCTCCTCCCAAGCTCCCG 62.168 72.222 0.00 0.00 36.80 5.14
655 656 3.011517 TGCTCCTCCCAAGCTCCC 61.012 66.667 0.00 0.00 40.50 4.30
656 657 2.270527 GTGCTCCTCCCAAGCTCC 59.729 66.667 0.00 0.00 40.50 4.70
657 658 2.125350 CGTGCTCCTCCCAAGCTC 60.125 66.667 0.00 0.00 40.50 4.09
658 659 2.604686 TCGTGCTCCTCCCAAGCT 60.605 61.111 0.00 0.00 40.50 3.74
659 660 2.125350 CTCGTGCTCCTCCCAAGC 60.125 66.667 0.00 0.00 40.26 4.01
660 661 0.967887 TCTCTCGTGCTCCTCCCAAG 60.968 60.000 0.00 0.00 0.00 3.61
661 662 1.076727 TCTCTCGTGCTCCTCCCAA 59.923 57.895 0.00 0.00 0.00 4.12
662 663 1.679305 GTCTCTCGTGCTCCTCCCA 60.679 63.158 0.00 0.00 0.00 4.37
663 664 2.766400 CGTCTCTCGTGCTCCTCCC 61.766 68.421 0.00 0.00 34.52 4.30
664 665 1.745864 TCGTCTCTCGTGCTCCTCC 60.746 63.158 0.00 0.00 40.80 4.30
665 666 1.022451 AGTCGTCTCTCGTGCTCCTC 61.022 60.000 0.00 0.00 40.80 3.71
666 667 0.606944 AAGTCGTCTCTCGTGCTCCT 60.607 55.000 0.00 0.00 40.80 3.69
667 668 0.179184 GAAGTCGTCTCTCGTGCTCC 60.179 60.000 0.00 0.00 40.80 4.70
668 669 0.800012 AGAAGTCGTCTCTCGTGCTC 59.200 55.000 0.00 0.00 40.80 4.26
669 670 2.935505 AGAAGTCGTCTCTCGTGCT 58.064 52.632 0.00 0.00 40.80 4.40
677 678 4.082845 TGGATTCTTGAGAGAAGTCGTCT 58.917 43.478 0.00 0.00 44.65 4.18
678 679 4.156922 TCTGGATTCTTGAGAGAAGTCGTC 59.843 45.833 0.00 0.00 44.65 4.20
679 680 4.082845 TCTGGATTCTTGAGAGAAGTCGT 58.917 43.478 0.00 0.00 44.65 4.34
680 681 4.710423 TCTGGATTCTTGAGAGAAGTCG 57.290 45.455 0.00 0.00 44.65 4.18
693 694 9.915629 AACGACTATATTACAGAATCTGGATTC 57.084 33.333 15.38 13.59 45.66 2.52
694 695 9.698309 CAACGACTATATTACAGAATCTGGATT 57.302 33.333 15.38 5.16 35.51 3.01
695 696 8.861086 ACAACGACTATATTACAGAATCTGGAT 58.139 33.333 15.38 10.37 35.51 3.41
696 697 8.234136 ACAACGACTATATTACAGAATCTGGA 57.766 34.615 15.38 2.37 35.51 3.86
697 698 8.755941 CAACAACGACTATATTACAGAATCTGG 58.244 37.037 15.38 0.00 35.51 3.86
698 699 8.269424 GCAACAACGACTATATTACAGAATCTG 58.731 37.037 8.98 8.98 37.52 2.90
699 700 7.167635 CGCAACAACGACTATATTACAGAATCT 59.832 37.037 0.00 0.00 34.06 2.40
700 701 7.166970 TCGCAACAACGACTATATTACAGAATC 59.833 37.037 0.00 0.00 37.09 2.52
701 702 6.976349 TCGCAACAACGACTATATTACAGAAT 59.024 34.615 0.00 0.00 37.09 2.40
702 703 6.324042 TCGCAACAACGACTATATTACAGAA 58.676 36.000 0.00 0.00 37.09 3.02
703 704 5.882553 TCGCAACAACGACTATATTACAGA 58.117 37.500 0.00 0.00 37.09 3.41
704 705 6.416750 TCATCGCAACAACGACTATATTACAG 59.583 38.462 0.00 0.00 46.28 2.74
705 706 6.267070 TCATCGCAACAACGACTATATTACA 58.733 36.000 0.00 0.00 46.28 2.41
706 707 6.635641 TCTCATCGCAACAACGACTATATTAC 59.364 38.462 0.00 0.00 46.28 1.89
707 708 6.731164 TCTCATCGCAACAACGACTATATTA 58.269 36.000 0.00 0.00 46.28 0.98
708 709 5.588240 TCTCATCGCAACAACGACTATATT 58.412 37.500 0.00 0.00 46.28 1.28
709 710 5.008712 TCTCTCATCGCAACAACGACTATAT 59.991 40.000 0.00 0.00 46.28 0.86
710 711 4.334481 TCTCTCATCGCAACAACGACTATA 59.666 41.667 0.00 0.00 46.28 1.31
711 712 3.128764 TCTCTCATCGCAACAACGACTAT 59.871 43.478 0.00 0.00 46.28 2.12
712 713 2.486592 TCTCTCATCGCAACAACGACTA 59.513 45.455 0.00 0.00 46.28 2.59
713 714 1.269723 TCTCTCATCGCAACAACGACT 59.730 47.619 0.00 0.00 46.28 4.18
714 715 1.698165 TCTCTCATCGCAACAACGAC 58.302 50.000 0.00 0.00 46.28 4.34
716 717 3.729526 ATTTCTCTCATCGCAACAACG 57.270 42.857 0.00 0.00 0.00 4.10
717 718 4.787598 ACAATTTCTCTCATCGCAACAAC 58.212 39.130 0.00 0.00 0.00 3.32
718 719 6.017523 TGTTACAATTTCTCTCATCGCAACAA 60.018 34.615 0.00 0.00 0.00 2.83
719 720 5.468409 TGTTACAATTTCTCTCATCGCAACA 59.532 36.000 0.00 0.00 0.00 3.33
720 721 5.927030 TGTTACAATTTCTCTCATCGCAAC 58.073 37.500 0.00 0.00 0.00 4.17
721 722 6.552859 TTGTTACAATTTCTCTCATCGCAA 57.447 33.333 0.00 0.00 0.00 4.85
722 723 6.371271 TCATTGTTACAATTTCTCTCATCGCA 59.629 34.615 7.97 0.00 0.00 5.10
723 724 6.775088 TCATTGTTACAATTTCTCTCATCGC 58.225 36.000 7.97 0.00 0.00 4.58
724 725 6.904011 GCTCATTGTTACAATTTCTCTCATCG 59.096 38.462 7.97 0.00 0.00 3.84
725 726 7.148188 TGGCTCATTGTTACAATTTCTCTCATC 60.148 37.037 7.97 0.00 0.00 2.92
726 727 6.660521 TGGCTCATTGTTACAATTTCTCTCAT 59.339 34.615 7.97 0.00 0.00 2.90
727 728 6.003326 TGGCTCATTGTTACAATTTCTCTCA 58.997 36.000 7.97 0.60 0.00 3.27
728 729 6.500684 TGGCTCATTGTTACAATTTCTCTC 57.499 37.500 7.97 0.00 0.00 3.20
729 730 7.472334 AATGGCTCATTGTTACAATTTCTCT 57.528 32.000 7.97 0.00 32.39 3.10
730 731 7.412237 GCAAATGGCTCATTGTTACAATTTCTC 60.412 37.037 7.97 0.40 40.25 2.87
731 732 6.369615 GCAAATGGCTCATTGTTACAATTTCT 59.630 34.615 7.97 0.00 40.25 2.52
732 733 6.147492 TGCAAATGGCTCATTGTTACAATTTC 59.853 34.615 7.97 0.75 45.15 2.17
733 734 5.996513 TGCAAATGGCTCATTGTTACAATTT 59.003 32.000 7.97 0.00 45.15 1.82
734 735 5.549347 TGCAAATGGCTCATTGTTACAATT 58.451 33.333 7.97 0.00 45.15 2.32
735 736 5.149973 TGCAAATGGCTCATTGTTACAAT 57.850 34.783 4.56 4.56 45.15 2.71
736 737 4.597404 TGCAAATGGCTCATTGTTACAA 57.403 36.364 0.00 0.00 45.15 2.41
737 738 4.597404 TTGCAAATGGCTCATTGTTACA 57.403 36.364 0.00 0.00 45.15 2.41
738 739 5.921004 TTTTGCAAATGGCTCATTGTTAC 57.079 34.783 13.65 0.00 45.15 2.50
739 740 6.228995 TCATTTTGCAAATGGCTCATTGTTA 58.771 32.000 13.65 0.00 45.15 2.41
740 741 5.064558 TCATTTTGCAAATGGCTCATTGTT 58.935 33.333 13.65 0.00 45.15 2.83
741 742 4.643463 TCATTTTGCAAATGGCTCATTGT 58.357 34.783 13.65 0.00 45.15 2.71
742 743 5.352846 TCATCATTTTGCAAATGGCTCATTG 59.647 36.000 13.65 3.85 45.15 2.82
743 744 5.492895 TCATCATTTTGCAAATGGCTCATT 58.507 33.333 13.65 0.00 45.15 2.57
744 745 5.092554 TCATCATTTTGCAAATGGCTCAT 57.907 34.783 13.65 0.00 45.15 2.90
745 746 4.538746 TCATCATTTTGCAAATGGCTCA 57.461 36.364 13.65 0.00 45.15 4.26
746 747 7.307751 CCATTATCATCATTTTGCAAATGGCTC 60.308 37.037 13.65 0.00 45.15 4.70
747 748 6.485313 CCATTATCATCATTTTGCAAATGGCT 59.515 34.615 13.65 2.81 45.15 4.75
748 749 6.293735 CCCATTATCATCATTTTGCAAATGGC 60.294 38.462 13.65 0.00 45.13 4.40
749 750 6.205853 CCCCATTATCATCATTTTGCAAATGG 59.794 38.462 13.65 12.75 37.81 3.16
750 751 6.293735 GCCCCATTATCATCATTTTGCAAATG 60.294 38.462 13.65 12.99 0.00 2.32
751 752 5.766174 GCCCCATTATCATCATTTTGCAAAT 59.234 36.000 13.65 0.00 0.00 2.32
752 753 5.124645 GCCCCATTATCATCATTTTGCAAA 58.875 37.500 8.05 8.05 0.00 3.68
753 754 4.163649 TGCCCCATTATCATCATTTTGCAA 59.836 37.500 0.00 0.00 0.00 4.08
754 755 3.710165 TGCCCCATTATCATCATTTTGCA 59.290 39.130 0.00 0.00 0.00 4.08
755 756 4.060205 GTGCCCCATTATCATCATTTTGC 58.940 43.478 0.00 0.00 0.00 3.68
756 757 4.202141 ACGTGCCCCATTATCATCATTTTG 60.202 41.667 0.00 0.00 0.00 2.44
757 758 3.960102 ACGTGCCCCATTATCATCATTTT 59.040 39.130 0.00 0.00 0.00 1.82
758 759 3.318839 CACGTGCCCCATTATCATCATTT 59.681 43.478 0.82 0.00 0.00 2.32
759 760 2.886523 CACGTGCCCCATTATCATCATT 59.113 45.455 0.82 0.00 0.00 2.57
760 761 2.507484 CACGTGCCCCATTATCATCAT 58.493 47.619 0.82 0.00 0.00 2.45
761 762 1.476652 CCACGTGCCCCATTATCATCA 60.477 52.381 10.91 0.00 0.00 3.07
762 763 1.238439 CCACGTGCCCCATTATCATC 58.762 55.000 10.91 0.00 0.00 2.92
763 764 0.823356 GCCACGTGCCCCATTATCAT 60.823 55.000 10.91 0.00 0.00 2.45
764 765 1.453015 GCCACGTGCCCCATTATCA 60.453 57.895 10.91 0.00 0.00 2.15
765 766 2.542907 CGCCACGTGCCCCATTATC 61.543 63.158 10.91 0.00 36.24 1.75
766 767 1.973816 TACGCCACGTGCCCCATTAT 61.974 55.000 10.91 0.00 41.39 1.28
767 768 2.657066 TACGCCACGTGCCCCATTA 61.657 57.895 10.91 0.00 41.39 1.90
768 769 4.023234 TACGCCACGTGCCCCATT 62.023 61.111 10.91 0.00 41.39 3.16
769 770 4.770874 GTACGCCACGTGCCCCAT 62.771 66.667 10.91 0.00 41.39 4.00
774 775 3.659089 ATCCCTGTACGCCACGTGC 62.659 63.158 10.91 4.89 41.39 5.34
775 776 1.809619 CATCCCTGTACGCCACGTG 60.810 63.158 9.08 9.08 41.39 4.49
776 777 2.577059 CATCCCTGTACGCCACGT 59.423 61.111 0.00 0.00 44.35 4.49
777 778 2.202878 CCATCCCTGTACGCCACG 60.203 66.667 0.00 0.00 0.00 4.94
778 779 2.513897 GCCATCCCTGTACGCCAC 60.514 66.667 0.00 0.00 0.00 5.01
779 780 4.155733 CGCCATCCCTGTACGCCA 62.156 66.667 0.00 0.00 0.00 5.69
780 781 3.845259 TCGCCATCCCTGTACGCC 61.845 66.667 0.00 0.00 0.00 5.68
781 782 2.585247 GTCGCCATCCCTGTACGC 60.585 66.667 0.00 0.00 0.00 4.42
782 783 1.226974 CTGTCGCCATCCCTGTACG 60.227 63.158 0.00 0.00 0.00 3.67
783 784 0.179108 GTCTGTCGCCATCCCTGTAC 60.179 60.000 0.00 0.00 0.00 2.90
784 785 0.613572 TGTCTGTCGCCATCCCTGTA 60.614 55.000 0.00 0.00 0.00 2.74
785 786 1.913262 TGTCTGTCGCCATCCCTGT 60.913 57.895 0.00 0.00 0.00 4.00
786 787 1.448540 GTGTCTGTCGCCATCCCTG 60.449 63.158 0.00 0.00 0.00 4.45
787 788 2.982130 GTGTCTGTCGCCATCCCT 59.018 61.111 0.00 0.00 0.00 4.20
788 789 2.509336 CGTGTCTGTCGCCATCCC 60.509 66.667 0.00 0.00 0.00 3.85
789 790 2.509336 CCGTGTCTGTCGCCATCC 60.509 66.667 0.00 0.00 0.00 3.51
790 791 2.509336 CCCGTGTCTGTCGCCATC 60.509 66.667 0.00 0.00 0.00 3.51
791 792 4.082523 CCCCGTGTCTGTCGCCAT 62.083 66.667 0.00 0.00 0.00 4.40
795 796 3.633094 CTCAGCCCCGTGTCTGTCG 62.633 68.421 0.00 0.00 0.00 4.35
796 797 1.608717 ATCTCAGCCCCGTGTCTGTC 61.609 60.000 0.00 0.00 0.00 3.51
797 798 1.608717 GATCTCAGCCCCGTGTCTGT 61.609 60.000 0.00 0.00 0.00 3.41
798 799 1.142748 GATCTCAGCCCCGTGTCTG 59.857 63.158 0.00 0.00 0.00 3.51
799 800 2.060980 GGATCTCAGCCCCGTGTCT 61.061 63.158 0.00 0.00 0.00 3.41
800 801 2.501610 GGATCTCAGCCCCGTGTC 59.498 66.667 0.00 0.00 0.00 3.67
801 802 3.461773 CGGATCTCAGCCCCGTGT 61.462 66.667 0.00 0.00 38.55 4.49
802 803 4.899239 GCGGATCTCAGCCCCGTG 62.899 72.222 0.00 0.00 44.63 4.94
804 805 4.598894 CTGCGGATCTCAGCCCCG 62.599 72.222 0.00 0.00 45.51 5.73
805 806 4.247380 CCTGCGGATCTCAGCCCC 62.247 72.222 0.00 0.00 36.20 5.80
806 807 4.925861 GCCTGCGGATCTCAGCCC 62.926 72.222 0.00 0.00 36.20 5.19
808 809 3.512223 ATCGCCTGCGGATCTCAGC 62.512 63.158 12.06 5.90 40.25 4.26
809 810 1.372748 GATCGCCTGCGGATCTCAG 60.373 63.158 12.06 8.07 40.25 3.35
810 811 0.537371 TAGATCGCCTGCGGATCTCA 60.537 55.000 21.17 11.15 37.44 3.27
811 812 0.814457 ATAGATCGCCTGCGGATCTC 59.186 55.000 21.17 10.95 37.44 2.75
812 813 2.130272 TATAGATCGCCTGCGGATCT 57.870 50.000 21.25 21.25 38.64 2.75
813 814 2.544694 CCATATAGATCGCCTGCGGATC 60.545 54.545 12.06 12.49 40.25 3.36
814 815 1.410517 CCATATAGATCGCCTGCGGAT 59.589 52.381 12.06 4.08 40.25 4.18
815 816 0.817654 CCATATAGATCGCCTGCGGA 59.182 55.000 12.06 0.00 40.25 5.54
816 817 0.532573 ACCATATAGATCGCCTGCGG 59.467 55.000 12.06 0.00 40.25 5.69
817 818 2.370281 AACCATATAGATCGCCTGCG 57.630 50.000 4.92 4.92 41.35 5.18
818 819 4.515191 TGAAAAACCATATAGATCGCCTGC 59.485 41.667 0.00 0.00 0.00 4.85
819 820 6.618287 TTGAAAAACCATATAGATCGCCTG 57.382 37.500 0.00 0.00 0.00 4.85
820 821 7.639113 TTTTGAAAAACCATATAGATCGCCT 57.361 32.000 0.00 0.00 0.00 5.52
821 822 7.757624 TGTTTTTGAAAAACCATATAGATCGCC 59.242 33.333 25.43 1.96 0.00 5.54
822 823 8.682128 TGTTTTTGAAAAACCATATAGATCGC 57.318 30.769 25.43 2.34 0.00 4.58
831 832 9.007901 TCTGACAATTTGTTTTTGAAAAACCAT 57.992 25.926 25.43 16.67 0.00 3.55
832 833 8.286097 GTCTGACAATTTGTTTTTGAAAAACCA 58.714 29.630 25.43 15.39 0.00 3.67
833 834 8.503196 AGTCTGACAATTTGTTTTTGAAAAACC 58.497 29.630 25.43 12.13 0.00 3.27
834 835 9.316859 CAGTCTGACAATTTGTTTTTGAAAAAC 57.683 29.630 22.76 22.76 0.00 2.43
835 836 9.265901 TCAGTCTGACAATTTGTTTTTGAAAAA 57.734 25.926 10.88 0.00 0.00 1.94
836 837 8.824159 TCAGTCTGACAATTTGTTTTTGAAAA 57.176 26.923 10.88 0.00 0.00 2.29
837 838 8.871862 CATCAGTCTGACAATTTGTTTTTGAAA 58.128 29.630 10.88 0.00 0.00 2.69
838 839 8.034215 ACATCAGTCTGACAATTTGTTTTTGAA 58.966 29.630 10.88 0.00 0.00 2.69
839 840 7.546358 ACATCAGTCTGACAATTTGTTTTTGA 58.454 30.769 10.88 1.29 0.00 2.69
840 841 7.043192 GGACATCAGTCTGACAATTTGTTTTTG 60.043 37.037 10.88 0.00 44.36 2.44
841 842 6.980397 GGACATCAGTCTGACAATTTGTTTTT 59.020 34.615 10.88 0.00 44.36 1.94
846 847 5.455392 GTTGGACATCAGTCTGACAATTTG 58.545 41.667 10.88 1.64 44.36 2.32
870 872 2.159254 TGGAGTCAGTTTTGCAACAAGC 60.159 45.455 0.00 0.00 45.96 4.01
979 992 1.143183 GCGGAGAGGATTTGCCGTA 59.857 57.895 0.00 0.00 45.22 4.02
1084 1121 1.615814 CGGAGGAGGAAGAGGAGGA 59.384 63.158 0.00 0.00 0.00 3.71
1085 1122 4.268720 CGGAGGAGGAAGAGGAGG 57.731 66.667 0.00 0.00 0.00 4.30
1101 1138 4.143333 ATCTCGTGGGTTCCGCCG 62.143 66.667 0.00 0.00 38.44 6.46
1102 1139 2.202892 GATCTCGTGGGTTCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
1103 1140 2.202892 GGATCTCGTGGGTTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
1126 1163 2.688477 AGGCTGGAGGAAGGAATAGAG 58.312 52.381 0.00 0.00 0.00 2.43
1131 1168 2.038863 TGTTAGGCTGGAGGAAGGAA 57.961 50.000 0.00 0.00 0.00 3.36
1188 1225 1.374947 CGGTGAGGGATGTGGTTGT 59.625 57.895 0.00 0.00 0.00 3.32
1190 1227 1.537889 TCCGGTGAGGGATGTGGTT 60.538 57.895 0.00 0.00 41.52 3.67
1191 1228 2.121832 TCCGGTGAGGGATGTGGT 59.878 61.111 0.00 0.00 41.52 4.16
1194 1231 2.687566 GGGTCCGGTGAGGGATGT 60.688 66.667 0.00 0.00 41.52 3.06
1195 1232 3.480133 GGGGTCCGGTGAGGGATG 61.480 72.222 0.00 0.00 41.52 3.51
1481 1521 0.759060 GAGGGAGGAGAAGAGAGCCC 60.759 65.000 0.00 0.00 35.79 5.19
1485 1525 1.076632 GGCGAGGGAGGAGAAGAGA 60.077 63.158 0.00 0.00 0.00 3.10
1625 1665 1.303643 AAGAAGGCCGCAAAGGAGG 60.304 57.895 0.00 0.00 45.00 4.30
1774 1814 2.008329 CAAGACCTTCTCAGCATCTGC 58.992 52.381 0.00 0.00 42.49 4.26
1827 1867 1.980765 AGATGTCCAAAGCTCTCCACA 59.019 47.619 0.00 0.00 0.00 4.17
1851 1891 2.169352 AGCTCTCCACGCATACAAGAAT 59.831 45.455 0.00 0.00 0.00 2.40
1986 2026 4.631813 GCACGAAGTATGATTGAGGAAACT 59.368 41.667 0.00 0.00 41.61 2.66
1992 2032 2.282555 CACCGCACGAAGTATGATTGAG 59.717 50.000 0.00 0.00 41.61 3.02
1995 2035 1.206132 TCCACCGCACGAAGTATGATT 59.794 47.619 0.00 0.00 41.61 2.57
2061 2101 1.499056 GCATTGTGCGACCTCAGTG 59.501 57.895 0.00 0.00 31.71 3.66
2107 2147 2.775911 TGGAAGATCAACTGAGCCAG 57.224 50.000 0.00 1.16 37.52 4.85
2144 2184 4.019792 ACTACTGGCAATTGATGTGTCA 57.980 40.909 10.34 0.00 0.00 3.58
2159 2199 5.248640 ACCCAACAGAATCATCAACTACTG 58.751 41.667 0.00 0.00 0.00 2.74
2160 2200 5.505181 ACCCAACAGAATCATCAACTACT 57.495 39.130 0.00 0.00 0.00 2.57
2244 2284 1.089920 CTCCTTGGGCAGTCATTTCG 58.910 55.000 0.00 0.00 0.00 3.46
2287 2327 4.099881 GCAATATGCTTTCAAGATTGGGGA 59.900 41.667 0.00 0.00 40.96 4.81
2343 2383 3.330853 GCGCTAATCTCCGCCACG 61.331 66.667 0.00 0.00 44.10 4.94
2973 3013 4.558697 GCTTCCATTTTCCTAAAGTTGCGT 60.559 41.667 0.00 0.00 0.00 5.24
3006 3046 0.322546 GACCCGCCCAGTTCTTGAAT 60.323 55.000 0.00 0.00 0.00 2.57
3103 3143 4.588528 AGCTTCCATTTTCCTAAAGTTGCA 59.411 37.500 0.00 0.00 0.00 4.08
3158 3199 8.407832 CACATGATAGGTTGCAATCTTATGAAA 58.592 33.333 25.41 8.65 0.00 2.69
3506 3553 7.549842 TCATAGTTTTATAACCGCAGCAGTAAA 59.450 33.333 0.00 0.00 34.71 2.01
3568 3615 6.068670 AGTGAAAACATTACAAGGGTAGCTT 58.931 36.000 0.00 0.00 0.00 3.74
3788 3836 7.147312 TGGCAACTTCAAGTTTGAATAATCAG 58.853 34.615 0.00 0.00 45.26 2.90
3804 3852 4.105486 GTTTTGTCAACTCTGGCAACTTC 58.895 43.478 0.00 0.00 46.64 3.01
3805 3853 3.509575 TGTTTTGTCAACTCTGGCAACTT 59.490 39.130 0.00 0.00 46.64 2.66
3806 3854 3.088532 TGTTTTGTCAACTCTGGCAACT 58.911 40.909 0.00 0.00 46.64 3.16
3807 3855 3.179048 GTGTTTTGTCAACTCTGGCAAC 58.821 45.455 0.00 0.00 46.64 4.17
3808 3856 2.165437 GGTGTTTTGTCAACTCTGGCAA 59.835 45.455 0.00 0.00 45.35 4.52
3809 3857 1.748493 GGTGTTTTGTCAACTCTGGCA 59.252 47.619 0.00 0.00 34.62 4.92
3810 3858 1.748493 TGGTGTTTTGTCAACTCTGGC 59.252 47.619 0.00 0.00 0.00 4.85
3811 3859 2.752354 TGTGGTGTTTTGTCAACTCTGG 59.248 45.455 0.00 0.00 0.00 3.86
3812 3860 4.433186 TTGTGGTGTTTTGTCAACTCTG 57.567 40.909 0.00 0.00 0.00 3.35
3813 3861 6.959639 ATATTGTGGTGTTTTGTCAACTCT 57.040 33.333 0.00 0.00 0.00 3.24
3814 3862 9.180678 CTTAATATTGTGGTGTTTTGTCAACTC 57.819 33.333 0.00 0.00 0.00 3.01
3815 3863 8.908903 TCTTAATATTGTGGTGTTTTGTCAACT 58.091 29.630 0.00 0.00 0.00 3.16
3816 3864 9.522804 TTCTTAATATTGTGGTGTTTTGTCAAC 57.477 29.630 0.00 0.00 0.00 3.18
3817 3865 9.522804 GTTCTTAATATTGTGGTGTTTTGTCAA 57.477 29.630 0.00 0.00 0.00 3.18
3818 3866 8.908903 AGTTCTTAATATTGTGGTGTTTTGTCA 58.091 29.630 0.00 0.00 0.00 3.58
3819 3867 9.180678 CAGTTCTTAATATTGTGGTGTTTTGTC 57.819 33.333 0.00 0.00 0.00 3.18
3820 3868 8.141268 CCAGTTCTTAATATTGTGGTGTTTTGT 58.859 33.333 0.00 0.00 0.00 2.83
3821 3869 7.598493 CCCAGTTCTTAATATTGTGGTGTTTTG 59.402 37.037 0.00 0.00 0.00 2.44
3822 3870 7.256154 CCCCAGTTCTTAATATTGTGGTGTTTT 60.256 37.037 0.00 0.00 0.00 2.43
3823 3871 6.210584 CCCCAGTTCTTAATATTGTGGTGTTT 59.789 38.462 0.00 0.00 0.00 2.83
3824 3872 5.714806 CCCCAGTTCTTAATATTGTGGTGTT 59.285 40.000 0.00 0.00 0.00 3.32
3825 3873 5.222254 ACCCCAGTTCTTAATATTGTGGTGT 60.222 40.000 0.00 0.00 0.00 4.16
3826 3874 5.261216 ACCCCAGTTCTTAATATTGTGGTG 58.739 41.667 0.00 0.00 0.00 4.17
3827 3875 5.253096 AGACCCCAGTTCTTAATATTGTGGT 59.747 40.000 0.00 0.00 0.00 4.16
3828 3876 5.755849 AGACCCCAGTTCTTAATATTGTGG 58.244 41.667 0.00 0.00 0.00 4.17
3829 3877 5.823045 GGAGACCCCAGTTCTTAATATTGTG 59.177 44.000 0.00 0.00 34.14 3.33
3830 3878 6.002653 GGAGACCCCAGTTCTTAATATTGT 57.997 41.667 0.00 0.00 34.14 2.71
3848 3896 2.074576 GTTTTCCGCACTAAGGGAGAC 58.925 52.381 0.00 0.00 33.01 3.36
3849 3897 1.337447 CGTTTTCCGCACTAAGGGAGA 60.337 52.381 0.00 0.00 33.01 3.71
3850 3898 1.076332 CGTTTTCCGCACTAAGGGAG 58.924 55.000 0.00 0.00 33.01 4.30
3851 3899 0.320946 CCGTTTTCCGCACTAAGGGA 60.321 55.000 0.00 0.00 34.38 4.20
3852 3900 1.303091 CCCGTTTTCCGCACTAAGGG 61.303 60.000 0.00 0.00 34.38 3.95
3853 3901 0.320946 TCCCGTTTTCCGCACTAAGG 60.321 55.000 0.00 0.00 34.38 2.69
3854 3902 1.515081 TTCCCGTTTTCCGCACTAAG 58.485 50.000 0.00 0.00 34.38 2.18
3855 3903 1.964552 TTTCCCGTTTTCCGCACTAA 58.035 45.000 0.00 0.00 34.38 2.24
3856 3904 1.874872 CTTTTCCCGTTTTCCGCACTA 59.125 47.619 0.00 0.00 34.38 2.74
3857 3905 0.666374 CTTTTCCCGTTTTCCGCACT 59.334 50.000 0.00 0.00 34.38 4.40
3858 3906 0.382873 ACTTTTCCCGTTTTCCGCAC 59.617 50.000 0.00 0.00 34.38 5.34
3859 3907 0.382515 CACTTTTCCCGTTTTCCGCA 59.617 50.000 0.00 0.00 34.38 5.69
3860 3908 0.664224 TCACTTTTCCCGTTTTCCGC 59.336 50.000 0.00 0.00 34.38 5.54
3861 3909 2.287368 CCTTCACTTTTCCCGTTTTCCG 60.287 50.000 0.00 0.00 0.00 4.30
3862 3910 2.545113 GCCTTCACTTTTCCCGTTTTCC 60.545 50.000 0.00 0.00 0.00 3.13
3863 3911 2.100087 TGCCTTCACTTTTCCCGTTTTC 59.900 45.455 0.00 0.00 0.00 2.29
3864 3912 2.100749 CTGCCTTCACTTTTCCCGTTTT 59.899 45.455 0.00 0.00 0.00 2.43
3865 3913 1.681264 CTGCCTTCACTTTTCCCGTTT 59.319 47.619 0.00 0.00 0.00 3.60
3866 3914 1.318576 CTGCCTTCACTTTTCCCGTT 58.681 50.000 0.00 0.00 0.00 4.44
3867 3915 0.537371 CCTGCCTTCACTTTTCCCGT 60.537 55.000 0.00 0.00 0.00 5.28
3868 3916 0.250727 TCCTGCCTTCACTTTTCCCG 60.251 55.000 0.00 0.00 0.00 5.14
3869 3917 1.995376 TTCCTGCCTTCACTTTTCCC 58.005 50.000 0.00 0.00 0.00 3.97
3870 3918 4.767409 AGTTATTCCTGCCTTCACTTTTCC 59.233 41.667 0.00 0.00 0.00 3.13
3871 3919 5.966742 AGTTATTCCTGCCTTCACTTTTC 57.033 39.130 0.00 0.00 0.00 2.29
3872 3920 5.710567 GGTAGTTATTCCTGCCTTCACTTTT 59.289 40.000 0.00 0.00 34.67 2.27
3873 3921 5.014228 AGGTAGTTATTCCTGCCTTCACTTT 59.986 40.000 0.00 0.00 44.11 2.66
3874 3922 4.536489 AGGTAGTTATTCCTGCCTTCACTT 59.464 41.667 0.00 0.00 44.11 3.16
3875 3923 4.080863 CAGGTAGTTATTCCTGCCTTCACT 60.081 45.833 0.00 0.00 44.11 3.41
3876 3924 4.081087 TCAGGTAGTTATTCCTGCCTTCAC 60.081 45.833 6.36 0.00 44.11 3.18
3877 3925 4.101114 TCAGGTAGTTATTCCTGCCTTCA 58.899 43.478 6.36 0.00 44.11 3.02
3878 3926 4.755266 TCAGGTAGTTATTCCTGCCTTC 57.245 45.455 6.36 0.00 44.11 3.46
3879 3927 5.514500 TTTCAGGTAGTTATTCCTGCCTT 57.486 39.130 6.36 0.00 44.11 4.35
3884 3932 9.401058 CAATTCTGATTTCAGGTAGTTATTCCT 57.599 33.333 7.68 0.00 43.91 3.36
3885 3933 8.624776 CCAATTCTGATTTCAGGTAGTTATTCC 58.375 37.037 7.68 0.00 43.91 3.01
3886 3934 9.178758 ACCAATTCTGATTTCAGGTAGTTATTC 57.821 33.333 7.68 0.00 43.91 1.75
3887 3935 9.533831 AACCAATTCTGATTTCAGGTAGTTATT 57.466 29.630 7.68 0.00 43.91 1.40
3890 3938 8.934023 TTAACCAATTCTGATTTCAGGTAGTT 57.066 30.769 7.68 7.39 43.91 2.24
3891 3939 8.793592 GTTTAACCAATTCTGATTTCAGGTAGT 58.206 33.333 7.68 0.00 43.91 2.73
3892 3940 8.792633 TGTTTAACCAATTCTGATTTCAGGTAG 58.207 33.333 7.68 0.00 43.91 3.18
3893 3941 8.698973 TGTTTAACCAATTCTGATTTCAGGTA 57.301 30.769 7.68 0.00 43.91 3.08
3894 3942 7.595819 TGTTTAACCAATTCTGATTTCAGGT 57.404 32.000 7.68 0.00 43.91 4.00
3895 3943 7.761249 GGATGTTTAACCAATTCTGATTTCAGG 59.239 37.037 7.68 0.00 43.91 3.86
3896 3944 8.526147 AGGATGTTTAACCAATTCTGATTTCAG 58.474 33.333 0.97 0.97 45.08 3.02
3897 3945 8.306038 CAGGATGTTTAACCAATTCTGATTTCA 58.694 33.333 0.00 0.00 0.00 2.69
3898 3946 8.522830 TCAGGATGTTTAACCAATTCTGATTTC 58.477 33.333 3.22 0.00 37.40 2.17
3899 3947 8.421249 TCAGGATGTTTAACCAATTCTGATTT 57.579 30.769 3.22 0.00 37.40 2.17
3900 3948 8.599624 ATCAGGATGTTTAACCAATTCTGATT 57.400 30.769 11.30 0.94 37.40 2.57
3901 3949 9.872684 ATATCAGGATGTTTAACCAATTCTGAT 57.127 29.630 17.66 17.66 37.40 2.90
3902 3950 9.699410 AATATCAGGATGTTTAACCAATTCTGA 57.301 29.630 8.31 8.31 37.40 3.27
3929 3977 9.768662 ACTTCAAGTTTGAATAATCAGCATTTT 57.231 25.926 7.67 0.00 45.26 1.82
3930 3978 9.768662 AACTTCAAGTTTGAATAATCAGCATTT 57.231 25.926 7.67 0.00 45.26 2.32
3931 3979 9.199982 CAACTTCAAGTTTGAATAATCAGCATT 57.800 29.630 0.00 0.00 45.26 3.56
3932 3980 7.330208 GCAACTTCAAGTTTGAATAATCAGCAT 59.670 33.333 0.00 0.00 45.26 3.79
3933 3981 6.642131 GCAACTTCAAGTTTGAATAATCAGCA 59.358 34.615 0.00 0.00 45.26 4.41
3934 3982 6.089954 GGCAACTTCAAGTTTGAATAATCAGC 59.910 38.462 0.00 0.00 45.26 4.26
3935 3983 7.147312 TGGCAACTTCAAGTTTGAATAATCAG 58.853 34.615 0.00 0.00 45.26 2.90
3936 3984 7.014134 TCTGGCAACTTCAAGTTTGAATAATCA 59.986 33.333 0.00 3.75 45.26 2.57
3937 3985 7.370383 TCTGGCAACTTCAAGTTTGAATAATC 58.630 34.615 0.00 0.00 45.26 1.75
3938 3986 7.014615 ACTCTGGCAACTTCAAGTTTGAATAAT 59.985 33.333 0.00 0.00 45.26 1.28
3939 3987 6.321181 ACTCTGGCAACTTCAAGTTTGAATAA 59.679 34.615 0.00 0.00 45.26 1.40
3940 3988 5.827797 ACTCTGGCAACTTCAAGTTTGAATA 59.172 36.000 0.00 0.00 45.26 1.75
3941 3989 4.646492 ACTCTGGCAACTTCAAGTTTGAAT 59.354 37.500 0.00 0.00 45.26 2.57
3942 3990 4.016444 ACTCTGGCAACTTCAAGTTTGAA 58.984 39.130 0.00 7.06 44.31 2.69
3943 3991 3.620488 ACTCTGGCAACTTCAAGTTTGA 58.380 40.909 0.00 0.00 36.03 2.69
3944 3992 4.107622 CAACTCTGGCAACTTCAAGTTTG 58.892 43.478 0.00 0.00 36.03 2.93
3945 3993 4.016444 TCAACTCTGGCAACTTCAAGTTT 58.984 39.130 0.00 0.00 36.03 2.66
3946 3994 3.378427 GTCAACTCTGGCAACTTCAAGTT 59.622 43.478 0.00 0.00 39.39 2.66
3947 3995 2.945668 GTCAACTCTGGCAACTTCAAGT 59.054 45.455 0.00 0.00 37.61 3.16
3948 3996 2.945008 TGTCAACTCTGGCAACTTCAAG 59.055 45.455 0.00 0.00 33.09 3.02
3949 3997 2.997980 TGTCAACTCTGGCAACTTCAA 58.002 42.857 0.00 0.00 33.09 2.69
3950 3998 2.708216 TGTCAACTCTGGCAACTTCA 57.292 45.000 0.00 0.00 33.09 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.