Multiple sequence alignment - TraesCS3A01G325600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G325600 chr3A 100.000 4727 0 0 1 4727 570799135 570794409 0.000000e+00 8730
1 TraesCS3A01G325600 chr3D 94.266 3697 124 42 297 3939 432551029 432547367 0.000000e+00 5572
2 TraesCS3A01G325600 chr3D 86.063 287 12 14 4339 4621 432547153 432546891 2.780000e-72 283
3 TraesCS3A01G325600 chr3D 91.200 125 10 1 4228 4352 336616921 336616798 8.140000e-38 169
4 TraesCS3A01G325600 chr3D 96.774 93 3 0 4635 4727 432546907 432546815 6.330000e-34 156
5 TraesCS3A01G325600 chr3D 80.000 235 11 15 4011 4231 432547370 432547158 1.770000e-29 141
6 TraesCS3A01G325600 chr3B 93.764 3672 123 43 294 3926 564780281 564776677 0.000000e+00 5415
7 TraesCS3A01G325600 chr3B 85.714 287 19 10 4339 4620 564776446 564776177 2.780000e-72 283
8 TraesCS3A01G325600 chr3B 85.455 165 13 6 148 308 564783515 564783358 1.360000e-35 161
9 TraesCS3A01G325600 chr3B 93.407 91 6 0 4637 4727 564776190 564776100 8.250000e-28 135
10 TraesCS3A01G325600 chr6B 94.737 114 6 0 4227 4340 23766359 23766472 1.350000e-40 178
11 TraesCS3A01G325600 chr5D 94.737 114 6 0 4227 4340 529449812 529449925 1.350000e-40 178
12 TraesCS3A01G325600 chr4A 94.017 117 7 0 4224 4340 550136377 550136493 1.350000e-40 178
13 TraesCS3A01G325600 chr7A 92.623 122 8 1 4219 4340 9642365 9642485 1.750000e-39 174
14 TraesCS3A01G325600 chr7A 91.870 123 10 0 4225 4347 32594501 32594379 6.290000e-39 172
15 TraesCS3A01G325600 chr5A 92.500 120 9 0 4227 4346 87931493 87931374 6.290000e-39 172
16 TraesCS3A01G325600 chr2D 90.152 132 11 2 4226 4356 13492453 13492583 2.260000e-38 171
17 TraesCS3A01G325600 chr4D 91.803 122 9 1 4228 4349 60634347 60634467 8.140000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G325600 chr3A 570794409 570799135 4726 True 8730.0 8730 100.00000 1 4727 1 chr3A.!!$R1 4726
1 TraesCS3A01G325600 chr3D 432546815 432551029 4214 True 1538.0 5572 89.27575 297 4727 4 chr3D.!!$R2 4430
2 TraesCS3A01G325600 chr3B 564776100 564783515 7415 True 1498.5 5415 89.58500 148 4727 4 chr3B.!!$R1 4579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 3573 0.108804 AACCGTACTGACATGCTCGG 60.109 55.0 0.0 0.0 42.94 4.63 F
1386 4515 0.472471 TCAAGGACAAGGGCGACTTT 59.528 50.0 0.0 0.0 37.29 2.66 F
2523 5652 0.177604 CAGAGAAATGGAGCGAGGCT 59.822 55.0 0.0 0.0 43.88 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 4872 0.100325 CGTCCAGCAGCAACACAAAA 59.900 50.0 0.00 0.0 0.00 2.44 R
2902 6031 0.596577 TCACCGACTTTCCAGTCTCG 59.403 55.0 1.12 0.0 46.67 4.04 R
3954 7103 0.035881 ACATCTGACAGGCACCACTG 59.964 55.0 1.81 0.0 44.03 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.864565 CCACATTATGGCGATGACGA 58.135 50.000 0.00 0.00 43.24 4.20
76 77 3.123674 GGCGATGACGACTCTTTGT 57.876 52.632 0.00 0.00 45.04 2.83
77 78 1.429463 GGCGATGACGACTCTTTGTT 58.571 50.000 0.00 0.00 45.04 2.83
78 79 1.798813 GGCGATGACGACTCTTTGTTT 59.201 47.619 0.00 0.00 45.04 2.83
79 80 2.223377 GGCGATGACGACTCTTTGTTTT 59.777 45.455 0.00 0.00 45.04 2.43
80 81 3.218398 GCGATGACGACTCTTTGTTTTG 58.782 45.455 0.00 0.00 42.66 2.44
81 82 3.303132 GCGATGACGACTCTTTGTTTTGT 60.303 43.478 0.00 0.00 42.66 2.83
82 83 4.203828 CGATGACGACTCTTTGTTTTGTG 58.796 43.478 0.00 0.00 42.66 3.33
83 84 3.398954 TGACGACTCTTTGTTTTGTGC 57.601 42.857 0.00 0.00 0.00 4.57
84 85 2.744741 TGACGACTCTTTGTTTTGTGCA 59.255 40.909 0.00 0.00 0.00 4.57
85 86 3.098636 GACGACTCTTTGTTTTGTGCAC 58.901 45.455 10.75 10.75 0.00 4.57
86 87 2.486203 ACGACTCTTTGTTTTGTGCACA 59.514 40.909 17.42 17.42 0.00 4.57
87 88 3.057876 ACGACTCTTTGTTTTGTGCACAA 60.058 39.130 27.96 27.96 32.16 3.33
88 89 4.104776 CGACTCTTTGTTTTGTGCACAAT 58.895 39.130 31.48 14.33 34.13 2.71
89 90 4.027458 CGACTCTTTGTTTTGTGCACAATG 60.027 41.667 31.48 16.91 34.13 2.82
90 91 4.183101 ACTCTTTGTTTTGTGCACAATGG 58.817 39.130 31.48 17.15 34.13 3.16
91 92 4.183101 CTCTTTGTTTTGTGCACAATGGT 58.817 39.130 31.48 0.00 34.13 3.55
92 93 4.573900 TCTTTGTTTTGTGCACAATGGTT 58.426 34.783 31.48 0.00 34.13 3.67
93 94 5.724328 TCTTTGTTTTGTGCACAATGGTTA 58.276 33.333 31.48 14.73 34.13 2.85
94 95 5.578727 TCTTTGTTTTGTGCACAATGGTTAC 59.421 36.000 31.48 22.05 34.13 2.50
95 96 3.439293 TGTTTTGTGCACAATGGTTACG 58.561 40.909 31.48 0.00 35.55 3.18
96 97 2.783828 TTTGTGCACAATGGTTACGG 57.216 45.000 31.48 0.00 35.55 4.02
97 98 0.312416 TTGTGCACAATGGTTACGGC 59.688 50.000 27.96 0.00 0.00 5.68
98 99 1.211709 GTGCACAATGGTTACGGCC 59.788 57.895 13.17 0.00 0.00 6.13
99 100 1.974343 TGCACAATGGTTACGGCCC 60.974 57.895 0.00 0.00 0.00 5.80
100 101 2.706834 GCACAATGGTTACGGCCCC 61.707 63.158 0.00 0.00 0.00 5.80
101 102 1.001393 CACAATGGTTACGGCCCCT 60.001 57.895 0.00 0.00 0.00 4.79
102 103 0.253610 CACAATGGTTACGGCCCCTA 59.746 55.000 0.00 0.00 0.00 3.53
103 104 1.133915 CACAATGGTTACGGCCCCTAT 60.134 52.381 0.00 0.00 0.00 2.57
104 105 2.105134 CACAATGGTTACGGCCCCTATA 59.895 50.000 0.00 0.00 0.00 1.31
105 106 2.983898 ACAATGGTTACGGCCCCTATAT 59.016 45.455 0.00 0.00 0.00 0.86
106 107 4.020039 CACAATGGTTACGGCCCCTATATA 60.020 45.833 0.00 0.00 0.00 0.86
107 108 4.786454 ACAATGGTTACGGCCCCTATATAT 59.214 41.667 0.00 0.00 0.00 0.86
108 109 5.104652 ACAATGGTTACGGCCCCTATATATC 60.105 44.000 0.00 0.00 0.00 1.63
109 110 3.377573 TGGTTACGGCCCCTATATATCC 58.622 50.000 0.00 0.00 0.00 2.59
110 111 3.246057 TGGTTACGGCCCCTATATATCCA 60.246 47.826 0.00 0.00 0.00 3.41
111 112 3.971971 GGTTACGGCCCCTATATATCCAT 59.028 47.826 0.00 0.00 0.00 3.41
112 113 4.202326 GGTTACGGCCCCTATATATCCATG 60.202 50.000 0.00 0.00 0.00 3.66
113 114 3.130734 ACGGCCCCTATATATCCATGT 57.869 47.619 0.00 0.00 0.00 3.21
114 115 4.274794 ACGGCCCCTATATATCCATGTA 57.725 45.455 0.00 0.00 0.00 2.29
115 116 4.627015 ACGGCCCCTATATATCCATGTAA 58.373 43.478 0.00 0.00 0.00 2.41
116 117 5.034200 ACGGCCCCTATATATCCATGTAAA 58.966 41.667 0.00 0.00 0.00 2.01
117 118 5.130477 ACGGCCCCTATATATCCATGTAAAG 59.870 44.000 0.00 0.00 0.00 1.85
118 119 5.377478 GGCCCCTATATATCCATGTAAAGC 58.623 45.833 0.00 0.00 0.00 3.51
119 120 5.057149 GCCCCTATATATCCATGTAAAGCG 58.943 45.833 0.00 0.00 0.00 4.68
120 121 5.396436 GCCCCTATATATCCATGTAAAGCGT 60.396 44.000 0.00 0.00 0.00 5.07
121 122 6.049149 CCCCTATATATCCATGTAAAGCGTG 58.951 44.000 0.00 0.00 0.00 5.34
122 123 6.351881 CCCCTATATATCCATGTAAAGCGTGT 60.352 42.308 0.00 0.00 32.30 4.49
123 124 7.103641 CCCTATATATCCATGTAAAGCGTGTT 58.896 38.462 0.00 0.00 32.30 3.32
124 125 7.606456 CCCTATATATCCATGTAAAGCGTGTTT 59.394 37.037 0.00 0.00 32.30 2.83
125 126 8.999431 CCTATATATCCATGTAAAGCGTGTTTT 58.001 33.333 0.00 0.00 32.30 2.43
132 133 9.730420 ATCCATGTAAAGCGTGTTTTATATTTC 57.270 29.630 0.00 0.00 32.30 2.17
133 134 8.731605 TCCATGTAAAGCGTGTTTTATATTTCA 58.268 29.630 0.00 0.00 32.30 2.69
134 135 9.515020 CCATGTAAAGCGTGTTTTATATTTCAT 57.485 29.630 0.00 0.00 32.30 2.57
140 141 8.987599 AAGCGTGTTTTATATTTCATATGACG 57.012 30.769 4.48 2.97 0.00 4.35
141 142 8.360325 AGCGTGTTTTATATTTCATATGACGA 57.640 30.769 4.48 0.00 0.00 4.20
142 143 8.273557 AGCGTGTTTTATATTTCATATGACGAC 58.726 33.333 4.48 0.00 0.00 4.34
143 144 8.273557 GCGTGTTTTATATTTCATATGACGACT 58.726 33.333 4.48 0.00 0.00 4.18
144 145 9.779237 CGTGTTTTATATTTCATATGACGACTC 57.221 33.333 4.48 0.00 0.00 3.36
158 159 3.679980 TGACGACTCTGCTAAATTGCTTC 59.320 43.478 0.00 0.00 0.00 3.86
164 165 5.749462 ACTCTGCTAAATTGCTTCTATGGT 58.251 37.500 0.00 0.00 0.00 3.55
165 166 6.183347 ACTCTGCTAAATTGCTTCTATGGTT 58.817 36.000 0.00 0.00 0.00 3.67
176 177 7.849804 TTGCTTCTATGGTTCTGTATTCTTC 57.150 36.000 0.00 0.00 0.00 2.87
177 178 6.349300 TGCTTCTATGGTTCTGTATTCTTCC 58.651 40.000 0.00 0.00 0.00 3.46
178 179 5.760743 GCTTCTATGGTTCTGTATTCTTCCC 59.239 44.000 0.00 0.00 0.00 3.97
179 180 6.408662 GCTTCTATGGTTCTGTATTCTTCCCT 60.409 42.308 0.00 0.00 0.00 4.20
180 181 7.202011 GCTTCTATGGTTCTGTATTCTTCCCTA 60.202 40.741 0.00 0.00 0.00 3.53
181 182 7.598759 TCTATGGTTCTGTATTCTTCCCTAC 57.401 40.000 0.00 0.00 0.00 3.18
196 197 3.404899 TCCCTACGTGTTTGTTTCATCC 58.595 45.455 0.00 0.00 0.00 3.51
209 210 1.159285 TTCATCCAAACTGCTCTGCG 58.841 50.000 0.00 0.00 0.00 5.18
226 227 3.170585 GTACGACAGCGCACGGAC 61.171 66.667 17.77 17.77 42.48 4.79
231 232 3.071459 GACAGCGCACGGACGATTG 62.071 63.158 11.47 0.00 34.06 2.67
261 266 2.159156 ACAAACCGGGTGAAAAGCTTTC 60.159 45.455 13.10 6.91 0.00 2.62
271 276 4.499019 GGTGAAAAGCTTTCGTTCCATGAA 60.499 41.667 13.10 0.00 0.00 2.57
272 277 5.222631 GTGAAAAGCTTTCGTTCCATGAAT 58.777 37.500 13.10 0.00 0.00 2.57
273 278 5.117592 GTGAAAAGCTTTCGTTCCATGAATG 59.882 40.000 13.10 0.00 0.00 2.67
274 279 5.009510 TGAAAAGCTTTCGTTCCATGAATGA 59.990 36.000 13.10 0.00 36.02 2.57
278 283 4.100529 GCTTTCGTTCCATGAATGATGTG 58.899 43.478 0.00 0.00 37.41 3.21
321 3413 1.372997 ACAGTGTGCTACCGCTTCG 60.373 57.895 0.00 0.00 36.97 3.79
322 3414 1.080772 CAGTGTGCTACCGCTTCGA 60.081 57.895 0.00 0.00 36.97 3.71
401 3493 4.873817 TCGGAGATCAACGTTGAAAAGTA 58.126 39.130 32.69 15.16 41.13 2.24
402 3494 4.921515 TCGGAGATCAACGTTGAAAAGTAG 59.078 41.667 32.69 21.38 41.13 2.57
403 3495 4.684703 CGGAGATCAACGTTGAAAAGTAGT 59.315 41.667 32.69 16.01 41.13 2.73
404 3496 5.860182 CGGAGATCAACGTTGAAAAGTAGTA 59.140 40.000 32.69 8.99 41.13 1.82
405 3497 6.183359 CGGAGATCAACGTTGAAAAGTAGTAC 60.183 42.308 32.69 15.28 41.13 2.73
406 3498 6.183359 GGAGATCAACGTTGAAAAGTAGTACG 60.183 42.308 32.69 0.90 41.13 3.67
407 3499 6.211515 AGATCAACGTTGAAAAGTAGTACGT 58.788 36.000 32.69 13.26 46.14 3.57
408 3500 7.362662 AGATCAACGTTGAAAAGTAGTACGTA 58.637 34.615 32.69 7.03 43.75 3.57
409 3501 6.974677 TCAACGTTGAAAAGTAGTACGTAG 57.025 37.500 27.94 0.00 43.75 3.51
410 3502 6.494842 TCAACGTTGAAAAGTAGTACGTAGT 58.505 36.000 27.94 8.23 43.75 2.73
411 3503 7.635423 TCAACGTTGAAAAGTAGTACGTAGTA 58.365 34.615 27.94 6.02 43.75 1.82
451 3550 3.057999 CGCATATTTGTCTTGTTTGCACG 59.942 43.478 0.00 0.00 0.00 5.34
463 3562 1.328374 GTTTGCACGTTCAACCGTACT 59.672 47.619 0.00 0.00 39.45 2.73
474 3573 0.108804 AACCGTACTGACATGCTCGG 60.109 55.000 0.00 0.00 42.94 4.63
475 3574 1.878522 CCGTACTGACATGCTCGGC 60.879 63.158 0.00 0.00 0.00 5.54
477 3576 1.878522 GTACTGACATGCTCGGCCG 60.879 63.158 22.12 22.12 0.00 6.13
478 3577 2.348104 TACTGACATGCTCGGCCGT 61.348 57.895 27.15 3.60 0.00 5.68
480 3579 4.758251 TGACATGCTCGGCCGTGG 62.758 66.667 27.15 19.79 0.00 4.94
481 3580 4.760047 GACATGCTCGGCCGTGGT 62.760 66.667 27.15 15.97 0.00 4.16
483 3582 4.758251 CATGCTCGGCCGTGGTCA 62.758 66.667 27.15 17.04 0.00 4.02
534 3640 7.253783 GCCTGACGAAAGAAAAAGAAAAGAAAG 60.254 37.037 0.00 0.00 0.00 2.62
739 3853 6.397667 TCCTTCTTGGCTAAGGATACTCCTG 61.398 48.000 10.21 0.00 45.97 3.86
776 3891 3.372566 CCCCAGCTACCAATTTGTCCATA 60.373 47.826 0.00 0.00 0.00 2.74
825 3952 1.005294 CACCAATTGCAGCTTGTCGC 61.005 55.000 0.00 0.00 39.57 5.19
911 4038 2.125512 GTCGCCGCACAGATCCTT 60.126 61.111 0.00 0.00 0.00 3.36
916 4043 0.659957 GCCGCACAGATCCTTCAATC 59.340 55.000 0.00 0.00 0.00 2.67
930 4057 1.462616 TCAATCCGTGCCCAAATCAG 58.537 50.000 0.00 0.00 0.00 2.90
1386 4515 0.472471 TCAAGGACAAGGGCGACTTT 59.528 50.000 0.00 0.00 37.29 2.66
1643 4772 2.182030 GGAGTTCAGCCTCGACGG 59.818 66.667 0.00 0.00 31.98 4.79
1842 4971 0.179062 AGAGCAAGATCATCGTGGCC 60.179 55.000 2.56 0.00 0.00 5.36
1933 5062 4.168291 CCGCCTGGGAGCTCTTCC 62.168 72.222 14.64 7.93 46.00 3.46
1991 5120 4.209866 GATCTGGGGGCCGGCAAT 62.210 66.667 30.85 10.98 0.00 3.56
2094 5223 1.315257 AATGGAAGCACGCCATCACC 61.315 55.000 5.61 0.00 45.11 4.02
2135 5264 1.093159 CAGCTTCTTGGCATGGAGAC 58.907 55.000 12.62 4.32 34.17 3.36
2140 5269 1.811266 CTTGGCATGGAGACGGACG 60.811 63.158 0.00 0.00 0.00 4.79
2358 5487 2.883386 GGGTGATCTCAAGATTGCATCC 59.117 50.000 0.00 0.00 34.37 3.51
2523 5652 0.177604 CAGAGAAATGGAGCGAGGCT 59.822 55.000 0.00 0.00 43.88 4.58
2765 5894 7.066645 CCTTGATTTGTATCACACAGACATCAT 59.933 37.037 0.00 0.00 40.42 2.45
2902 6031 5.401531 TCTGTACATGGACTTCAGTTACC 57.598 43.478 10.05 0.00 0.00 2.85
3015 6144 1.529713 GGTCGAGGCCCTAGAGAGG 60.530 68.421 0.00 0.00 43.33 3.69
3090 6219 1.009829 GCGGTAGCCTGACAAAGATG 58.990 55.000 0.00 0.00 37.42 2.90
3148 6277 3.182887 ACCTGAAGAGAGTGTGGATCT 57.817 47.619 0.00 0.00 0.00 2.75
3236 6365 6.581388 AGATCCCTGTGATTTTATGAGGAA 57.419 37.500 0.00 0.00 32.41 3.36
3471 6600 4.081642 GGGACTACTAGCAAAGTGATCACA 60.082 45.833 27.02 4.90 39.39 3.58
3496 6625 4.700692 CCTTCCCTAAACTTAAGGAACTGC 59.299 45.833 7.53 0.00 40.85 4.40
3570 6699 0.670854 GGTTCCCGTCACTGAAGAGC 60.671 60.000 0.00 0.00 0.00 4.09
3581 6710 1.134848 ACTGAAGAGCCTCAAGATCGC 60.135 52.381 0.00 0.00 0.00 4.58
3602 6731 2.426522 CGATTGTCCAAGCCTCAAGAA 58.573 47.619 0.00 0.00 0.00 2.52
3606 6735 1.271054 TGTCCAAGCCTCAAGAAGCTC 60.271 52.381 0.00 0.00 38.74 4.09
3608 6737 1.002888 TCCAAGCCTCAAGAAGCTCAG 59.997 52.381 0.00 0.00 38.74 3.35
3614 6743 1.627879 CTCAAGAAGCTCAGACTCGC 58.372 55.000 0.00 0.00 0.00 5.03
3621 6750 4.426112 CTCAGACTCGCTGCCGCA 62.426 66.667 0.00 0.00 44.52 5.69
3627 6756 3.485431 CTCGCTGCCGCAGAACTG 61.485 66.667 24.80 9.92 32.44 3.16
3631 6760 2.659016 CTGCCGCAGAACTGGAGA 59.341 61.111 15.74 0.00 32.44 3.71
3632 6761 1.004560 CTGCCGCAGAACTGGAGAA 60.005 57.895 15.74 0.00 32.44 2.87
3716 6845 0.249120 TACGAGCCACTGTTGGATGG 59.751 55.000 0.00 0.00 43.53 3.51
3721 6850 2.553028 GAGCCACTGTTGGATGGAAGAA 60.553 50.000 0.00 0.00 43.53 2.52
3722 6851 3.875369 GAGCCACTGTTGGATGGAAGAAT 60.875 47.826 0.00 0.00 43.53 2.40
3723 6852 5.932351 GAGCCACTGTTGGATGGAAGAATG 61.932 50.000 0.00 0.00 43.53 2.67
3743 6872 6.698766 AGAATGTGAGTGAATTCAGTTTTTGC 59.301 34.615 16.80 4.80 35.63 3.68
3745 6874 4.142491 TGTGAGTGAATTCAGTTTTTGCGT 60.142 37.500 16.80 0.00 0.00 5.24
3766 6895 5.220567 GCGTATTATGTTGGCCCAAAATTTG 60.221 40.000 4.03 0.00 0.00 2.32
3776 6905 4.462483 TGGCCCAAAATTTGAGAGATACAC 59.538 41.667 7.37 0.00 0.00 2.90
3784 6923 6.899393 AATTTGAGAGATACACTTTTGCCA 57.101 33.333 0.00 0.00 0.00 4.92
3796 6936 2.362329 TTTTGCCAGGCTTTGCGTCC 62.362 55.000 14.15 0.00 0.00 4.79
3803 6943 3.670377 GCTTTGCGTCCCGGCTTT 61.670 61.111 0.00 0.00 0.00 3.51
3804 6944 3.039134 CTTTGCGTCCCGGCTTTT 58.961 55.556 0.00 0.00 0.00 2.27
3805 6945 1.081442 CTTTGCGTCCCGGCTTTTC 60.081 57.895 0.00 0.00 0.00 2.29
3806 6946 1.515521 CTTTGCGTCCCGGCTTTTCT 61.516 55.000 0.00 0.00 0.00 2.52
3807 6947 1.512156 TTTGCGTCCCGGCTTTTCTC 61.512 55.000 0.00 0.00 0.00 2.87
3808 6948 2.047179 GCGTCCCGGCTTTTCTCT 60.047 61.111 0.00 0.00 0.00 3.10
3809 6949 1.217244 GCGTCCCGGCTTTTCTCTA 59.783 57.895 0.00 0.00 0.00 2.43
3811 6951 0.531200 CGTCCCGGCTTTTCTCTACT 59.469 55.000 0.00 0.00 0.00 2.57
3812 6952 1.747355 CGTCCCGGCTTTTCTCTACTA 59.253 52.381 0.00 0.00 0.00 1.82
3836 6985 7.694388 AGTTTCGAAGAAAATAAAAACAGGC 57.306 32.000 0.00 0.00 45.90 4.85
3849 6998 1.498176 AACAGGCTTACTCCACCCCC 61.498 60.000 0.00 0.00 0.00 5.40
3884 7033 9.877178 TTTACTTTTTCAAAAAGATGCTTGGTA 57.123 25.926 26.15 6.35 0.00 3.25
3885 7034 7.770801 ACTTTTTCAAAAAGATGCTTGGTAC 57.229 32.000 26.15 0.00 0.00 3.34
3886 7035 6.475402 ACTTTTTCAAAAAGATGCTTGGTACG 59.525 34.615 26.15 0.00 0.00 3.67
3887 7036 5.508200 TTTCAAAAAGATGCTTGGTACGT 57.492 34.783 0.00 0.00 0.00 3.57
3888 7037 6.621316 TTTCAAAAAGATGCTTGGTACGTA 57.379 33.333 0.00 0.00 0.00 3.57
3927 7076 3.288099 GGGATTGATGTGCCCTTGT 57.712 52.632 0.00 0.00 38.85 3.16
3929 7078 1.549203 GGATTGATGTGCCCTTGTGT 58.451 50.000 0.00 0.00 0.00 3.72
3930 7079 1.474077 GGATTGATGTGCCCTTGTGTC 59.526 52.381 0.00 0.00 0.00 3.67
3931 7080 2.161855 GATTGATGTGCCCTTGTGTCA 58.838 47.619 0.00 0.00 0.00 3.58
3933 7082 1.825090 TGATGTGCCCTTGTGTCATC 58.175 50.000 0.00 0.00 36.46 2.92
3934 7083 1.073603 TGATGTGCCCTTGTGTCATCA 59.926 47.619 0.00 0.00 41.27 3.07
3935 7084 2.291089 TGATGTGCCCTTGTGTCATCAT 60.291 45.455 0.00 0.00 39.53 2.45
3936 7085 2.291209 TGTGCCCTTGTGTCATCATT 57.709 45.000 0.00 0.00 0.00 2.57
3937 7086 2.161855 TGTGCCCTTGTGTCATCATTC 58.838 47.619 0.00 0.00 0.00 2.67
3938 7087 2.224843 TGTGCCCTTGTGTCATCATTCT 60.225 45.455 0.00 0.00 0.00 2.40
3940 7089 3.624861 GTGCCCTTGTGTCATCATTCTAG 59.375 47.826 0.00 0.00 0.00 2.43
3941 7090 3.264193 TGCCCTTGTGTCATCATTCTAGT 59.736 43.478 0.00 0.00 0.00 2.57
3942 7091 4.263462 TGCCCTTGTGTCATCATTCTAGTT 60.263 41.667 0.00 0.00 0.00 2.24
3943 7092 4.702131 GCCCTTGTGTCATCATTCTAGTTT 59.298 41.667 0.00 0.00 0.00 2.66
3944 7093 5.392380 GCCCTTGTGTCATCATTCTAGTTTG 60.392 44.000 0.00 0.00 0.00 2.93
3945 7094 5.939883 CCCTTGTGTCATCATTCTAGTTTGA 59.060 40.000 0.00 0.00 0.00 2.69
3946 7095 6.093219 CCCTTGTGTCATCATTCTAGTTTGAG 59.907 42.308 0.00 0.00 0.00 3.02
3947 7096 6.875726 CCTTGTGTCATCATTCTAGTTTGAGA 59.124 38.462 0.00 0.00 0.00 3.27
3948 7097 7.551974 CCTTGTGTCATCATTCTAGTTTGAGAT 59.448 37.037 0.00 0.00 0.00 2.75
3949 7098 8.484641 TTGTGTCATCATTCTAGTTTGAGATC 57.515 34.615 0.00 0.00 0.00 2.75
3950 7099 7.845037 TGTGTCATCATTCTAGTTTGAGATCT 58.155 34.615 0.00 0.00 0.00 2.75
3951 7100 7.763071 TGTGTCATCATTCTAGTTTGAGATCTG 59.237 37.037 0.00 0.00 0.00 2.90
3952 7101 6.760298 TGTCATCATTCTAGTTTGAGATCTGC 59.240 38.462 0.00 0.00 0.00 4.26
3953 7102 6.760298 GTCATCATTCTAGTTTGAGATCTGCA 59.240 38.462 0.00 0.00 0.00 4.41
3954 7103 6.760298 TCATCATTCTAGTTTGAGATCTGCAC 59.240 38.462 0.00 0.00 0.00 4.57
3955 7104 6.041423 TCATTCTAGTTTGAGATCTGCACA 57.959 37.500 0.00 0.00 0.00 4.57
3956 7105 6.104665 TCATTCTAGTTTGAGATCTGCACAG 58.895 40.000 0.00 0.00 0.00 3.66
3957 7106 5.474578 TTCTAGTTTGAGATCTGCACAGT 57.525 39.130 0.00 0.00 0.00 3.55
3958 7107 4.814147 TCTAGTTTGAGATCTGCACAGTG 58.186 43.478 0.00 0.00 0.00 3.66
3959 7108 2.775890 AGTTTGAGATCTGCACAGTGG 58.224 47.619 0.00 0.00 0.00 4.00
3960 7109 2.105477 AGTTTGAGATCTGCACAGTGGT 59.895 45.455 0.00 0.00 0.00 4.16
3969 7118 4.054085 CACAGTGGTGCCTGTCAG 57.946 61.111 0.00 0.00 43.70 3.51
3970 7119 1.447217 CACAGTGGTGCCTGTCAGA 59.553 57.895 0.00 0.00 43.70 3.27
3971 7120 0.035881 CACAGTGGTGCCTGTCAGAT 59.964 55.000 0.00 0.00 43.70 2.90
3972 7121 0.035881 ACAGTGGTGCCTGTCAGATG 59.964 55.000 0.00 0.00 41.84 2.90
3973 7122 0.035881 CAGTGGTGCCTGTCAGATGT 59.964 55.000 0.00 0.00 0.00 3.06
3974 7123 0.767375 AGTGGTGCCTGTCAGATGTT 59.233 50.000 0.00 0.00 0.00 2.71
3975 7124 1.143684 AGTGGTGCCTGTCAGATGTTT 59.856 47.619 0.00 0.00 0.00 2.83
3976 7125 1.267806 GTGGTGCCTGTCAGATGTTTG 59.732 52.381 0.00 0.00 0.00 2.93
3977 7126 1.142667 TGGTGCCTGTCAGATGTTTGA 59.857 47.619 0.00 0.00 0.00 2.69
3978 7127 1.808945 GGTGCCTGTCAGATGTTTGAG 59.191 52.381 0.00 0.00 0.00 3.02
3979 7128 2.498167 GTGCCTGTCAGATGTTTGAGT 58.502 47.619 0.00 0.00 0.00 3.41
3980 7129 2.880890 GTGCCTGTCAGATGTTTGAGTT 59.119 45.455 0.00 0.00 0.00 3.01
3981 7130 3.058639 GTGCCTGTCAGATGTTTGAGTTC 60.059 47.826 0.00 0.00 0.00 3.01
3982 7131 3.141398 GCCTGTCAGATGTTTGAGTTCA 58.859 45.455 0.00 0.00 0.00 3.18
3983 7132 3.188048 GCCTGTCAGATGTTTGAGTTCAG 59.812 47.826 0.00 0.00 0.00 3.02
3984 7133 3.750130 CCTGTCAGATGTTTGAGTTCAGG 59.250 47.826 0.00 0.00 34.52 3.86
3985 7134 3.743521 TGTCAGATGTTTGAGTTCAGGG 58.256 45.455 0.00 0.00 0.00 4.45
3986 7135 3.390967 TGTCAGATGTTTGAGTTCAGGGA 59.609 43.478 0.00 0.00 0.00 4.20
3987 7136 4.042062 TGTCAGATGTTTGAGTTCAGGGAT 59.958 41.667 0.00 0.00 0.00 3.85
3988 7137 5.248248 TGTCAGATGTTTGAGTTCAGGGATA 59.752 40.000 0.00 0.00 0.00 2.59
3989 7138 6.070021 TGTCAGATGTTTGAGTTCAGGGATAT 60.070 38.462 0.00 0.00 0.00 1.63
3990 7139 6.259608 GTCAGATGTTTGAGTTCAGGGATATG 59.740 42.308 0.00 0.00 0.00 1.78
3991 7140 5.008415 CAGATGTTTGAGTTCAGGGATATGC 59.992 44.000 0.00 0.00 0.00 3.14
3992 7141 3.620488 TGTTTGAGTTCAGGGATATGCC 58.380 45.455 4.83 4.83 0.00 4.40
4004 7153 2.508526 GGATATGCCCTTGTGTCATCC 58.491 52.381 0.00 0.00 0.00 3.51
4005 7154 2.107204 GGATATGCCCTTGTGTCATCCT 59.893 50.000 0.00 0.00 0.00 3.24
4006 7155 3.406764 GATATGCCCTTGTGTCATCCTC 58.593 50.000 0.00 0.00 0.00 3.71
4007 7156 0.257039 ATGCCCTTGTGTCATCCTCC 59.743 55.000 0.00 0.00 0.00 4.30
4008 7157 0.842030 TGCCCTTGTGTCATCCTCCT 60.842 55.000 0.00 0.00 0.00 3.69
4009 7158 0.329596 GCCCTTGTGTCATCCTCCTT 59.670 55.000 0.00 0.00 0.00 3.36
4017 7166 5.310409 TGTGTCATCCTCCTTTTCTTCTT 57.690 39.130 0.00 0.00 0.00 2.52
4018 7167 5.065914 TGTGTCATCCTCCTTTTCTTCTTG 58.934 41.667 0.00 0.00 0.00 3.02
4045 7194 6.482973 AGATTATGCTTTTGTTTTTGTGTGGG 59.517 34.615 0.00 0.00 0.00 4.61
4049 7198 3.594134 CTTTTGTTTTTGTGTGGGCTGA 58.406 40.909 0.00 0.00 0.00 4.26
4052 7201 1.895798 TGTTTTTGTGTGGGCTGAACA 59.104 42.857 0.00 0.00 0.00 3.18
4074 7237 7.576861 ACAAATGCACATCTGATGAATATCA 57.423 32.000 23.59 12.72 40.92 2.15
4095 7258 5.368145 TCAGCAGGTGTTGGTATGAATATC 58.632 41.667 0.00 0.00 35.30 1.63
4136 7307 5.124457 GTGTTGATCCAAATCTGTATGCAGT 59.876 40.000 10.80 0.00 43.05 4.40
4137 7308 6.316140 GTGTTGATCCAAATCTGTATGCAGTA 59.684 38.462 10.80 0.00 43.05 2.74
4138 7309 6.316140 TGTTGATCCAAATCTGTATGCAGTAC 59.684 38.462 10.80 0.00 43.05 2.73
4139 7310 5.049828 TGATCCAAATCTGTATGCAGTACG 58.950 41.667 10.80 0.00 43.05 3.67
4145 7316 1.672363 TCTGTATGCAGTACGTACGGG 59.328 52.381 24.09 18.81 44.30 5.28
4181 7352 4.164221 CAGCTAACCTATCCCTTCTTTCCA 59.836 45.833 0.00 0.00 0.00 3.53
4195 7366 4.783621 TCCATGCGTGCTCTGCCC 62.784 66.667 0.00 0.00 0.00 5.36
4231 7402 5.913137 TGCAATCGACAATCCCTAAAAAT 57.087 34.783 0.00 0.00 0.00 1.82
4232 7403 5.890334 TGCAATCGACAATCCCTAAAAATC 58.110 37.500 0.00 0.00 0.00 2.17
4233 7404 5.652014 TGCAATCGACAATCCCTAAAAATCT 59.348 36.000 0.00 0.00 0.00 2.40
4234 7405 6.826231 TGCAATCGACAATCCCTAAAAATCTA 59.174 34.615 0.00 0.00 0.00 1.98
4235 7406 7.132863 GCAATCGACAATCCCTAAAAATCTAC 58.867 38.462 0.00 0.00 0.00 2.59
4236 7407 7.012421 GCAATCGACAATCCCTAAAAATCTACT 59.988 37.037 0.00 0.00 0.00 2.57
4237 7408 8.552034 CAATCGACAATCCCTAAAAATCTACTC 58.448 37.037 0.00 0.00 0.00 2.59
4238 7409 6.579865 TCGACAATCCCTAAAAATCTACTCC 58.420 40.000 0.00 0.00 0.00 3.85
4239 7410 5.758784 CGACAATCCCTAAAAATCTACTCCC 59.241 44.000 0.00 0.00 0.00 4.30
4240 7411 6.408206 CGACAATCCCTAAAAATCTACTCCCT 60.408 42.308 0.00 0.00 0.00 4.20
4241 7412 6.901300 ACAATCCCTAAAAATCTACTCCCTC 58.099 40.000 0.00 0.00 0.00 4.30
4242 7413 6.126449 ACAATCCCTAAAAATCTACTCCCTCC 60.126 42.308 0.00 0.00 0.00 4.30
4243 7414 3.965347 TCCCTAAAAATCTACTCCCTCCG 59.035 47.826 0.00 0.00 0.00 4.63
4244 7415 3.710165 CCCTAAAAATCTACTCCCTCCGT 59.290 47.826 0.00 0.00 0.00 4.69
4245 7416 4.163649 CCCTAAAAATCTACTCCCTCCGTT 59.836 45.833 0.00 0.00 0.00 4.44
4246 7417 5.358090 CCTAAAAATCTACTCCCTCCGTTC 58.642 45.833 0.00 0.00 0.00 3.95
4247 7418 3.521947 AAAATCTACTCCCTCCGTTCG 57.478 47.619 0.00 0.00 0.00 3.95
4248 7419 1.400737 AATCTACTCCCTCCGTTCGG 58.599 55.000 4.74 4.74 0.00 4.30
4249 7420 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
4250 7421 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
4251 7422 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
4252 7423 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
4253 7424 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4254 7425 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4255 7426 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4256 7427 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4257 7428 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4258 7429 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4259 7430 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4260 7431 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
4261 7432 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
4262 7433 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
4263 7434 1.060122 GTTCGGAATTACTTGTCGCGG 59.940 52.381 6.13 0.00 0.00 6.46
4264 7435 0.527113 TCGGAATTACTTGTCGCGGA 59.473 50.000 6.13 0.00 0.00 5.54
4265 7436 1.067706 TCGGAATTACTTGTCGCGGAA 60.068 47.619 6.13 0.00 0.00 4.30
4266 7437 1.727880 CGGAATTACTTGTCGCGGAAA 59.272 47.619 6.13 0.00 0.00 3.13
4267 7438 2.350498 CGGAATTACTTGTCGCGGAAAT 59.650 45.455 6.13 0.00 0.00 2.17
4268 7439 3.680789 GGAATTACTTGTCGCGGAAATG 58.319 45.455 6.13 0.00 0.00 2.32
4269 7440 3.486875 GGAATTACTTGTCGCGGAAATGG 60.487 47.826 6.13 0.00 0.00 3.16
4270 7441 2.459060 TTACTTGTCGCGGAAATGGA 57.541 45.000 6.13 0.00 0.00 3.41
4271 7442 2.684001 TACTTGTCGCGGAAATGGAT 57.316 45.000 6.13 0.00 0.00 3.41
4272 7443 1.086696 ACTTGTCGCGGAAATGGATG 58.913 50.000 6.13 0.00 0.00 3.51
4273 7444 1.086696 CTTGTCGCGGAAATGGATGT 58.913 50.000 6.13 0.00 0.00 3.06
4274 7445 2.276201 CTTGTCGCGGAAATGGATGTA 58.724 47.619 6.13 0.00 0.00 2.29
4275 7446 2.613026 TGTCGCGGAAATGGATGTAT 57.387 45.000 6.13 0.00 0.00 2.29
4276 7447 2.479837 TGTCGCGGAAATGGATGTATC 58.520 47.619 6.13 0.00 0.00 2.24
4277 7448 2.102420 TGTCGCGGAAATGGATGTATCT 59.898 45.455 6.13 0.00 0.00 1.98
4278 7449 3.319689 TGTCGCGGAAATGGATGTATCTA 59.680 43.478 6.13 0.00 0.00 1.98
4279 7450 3.921021 GTCGCGGAAATGGATGTATCTAG 59.079 47.826 6.13 0.00 0.00 2.43
4280 7451 3.824443 TCGCGGAAATGGATGTATCTAGA 59.176 43.478 6.13 0.00 0.00 2.43
4281 7452 3.921021 CGCGGAAATGGATGTATCTAGAC 59.079 47.826 0.00 0.00 0.00 2.59
4282 7453 3.921021 GCGGAAATGGATGTATCTAGACG 59.079 47.826 0.00 0.00 0.00 4.18
4283 7454 4.558898 GCGGAAATGGATGTATCTAGACGT 60.559 45.833 0.00 0.00 0.00 4.34
4284 7455 5.335426 GCGGAAATGGATGTATCTAGACGTA 60.335 44.000 0.00 0.00 0.00 3.57
4285 7456 6.625300 GCGGAAATGGATGTATCTAGACGTAT 60.625 42.308 0.00 0.00 0.00 3.06
4286 7457 7.313646 CGGAAATGGATGTATCTAGACGTATT 58.686 38.462 0.00 0.00 0.00 1.89
4287 7458 7.813148 CGGAAATGGATGTATCTAGACGTATTT 59.187 37.037 0.00 0.00 0.00 1.40
4288 7459 9.490379 GGAAATGGATGTATCTAGACGTATTTT 57.510 33.333 0.00 0.00 0.00 1.82
4315 7486 9.826574 AGTTCTAGATACATCTATATCCGAGAC 57.173 37.037 0.00 0.00 38.60 3.36
4316 7487 9.602568 GTTCTAGATACATCTATATCCGAGACA 57.397 37.037 0.00 0.00 38.60 3.41
4318 7489 9.825109 TCTAGATACATCTATATCCGAGACAAG 57.175 37.037 0.00 0.00 38.60 3.16
4319 7490 9.607988 CTAGATACATCTATATCCGAGACAAGT 57.392 37.037 0.00 0.00 38.60 3.16
4321 7492 9.607988 AGATACATCTATATCCGAGACAAGTAG 57.392 37.037 0.00 0.00 34.85 2.57
4322 7493 9.386010 GATACATCTATATCCGAGACAAGTAGT 57.614 37.037 0.00 0.00 0.00 2.73
4323 7494 9.742144 ATACATCTATATCCGAGACAAGTAGTT 57.258 33.333 0.00 0.00 0.00 2.24
4324 7495 8.101654 ACATCTATATCCGAGACAAGTAGTTC 57.898 38.462 0.00 0.00 0.00 3.01
4325 7496 7.175293 ACATCTATATCCGAGACAAGTAGTTCC 59.825 40.741 0.00 0.00 0.00 3.62
4326 7497 4.832590 ATATCCGAGACAAGTAGTTCCG 57.167 45.455 0.00 0.00 0.00 4.30
4327 7498 2.189594 TCCGAGACAAGTAGTTCCGA 57.810 50.000 0.00 0.00 0.00 4.55
4328 7499 2.507484 TCCGAGACAAGTAGTTCCGAA 58.493 47.619 0.00 0.00 0.00 4.30
4329 7500 2.227388 TCCGAGACAAGTAGTTCCGAAC 59.773 50.000 2.81 2.81 0.00 3.95
4330 7501 2.240040 CGAGACAAGTAGTTCCGAACG 58.760 52.381 5.62 0.00 36.23 3.95
4331 7502 2.096069 CGAGACAAGTAGTTCCGAACGA 60.096 50.000 5.62 0.00 36.23 3.85
4332 7503 3.607775 CGAGACAAGTAGTTCCGAACGAA 60.608 47.826 5.62 0.00 36.23 3.85
4333 7504 3.898529 AGACAAGTAGTTCCGAACGAAG 58.101 45.455 5.62 0.00 36.23 3.79
4334 7505 3.567164 AGACAAGTAGTTCCGAACGAAGA 59.433 43.478 5.62 0.00 36.23 2.87
4335 7506 3.898529 ACAAGTAGTTCCGAACGAAGAG 58.101 45.455 5.62 0.99 36.23 2.85
4336 7507 3.567164 ACAAGTAGTTCCGAACGAAGAGA 59.433 43.478 5.62 0.00 36.23 3.10
4337 7508 4.159857 CAAGTAGTTCCGAACGAAGAGAG 58.840 47.826 5.62 0.00 36.23 3.20
4357 7528 9.860650 AAGAGAGTAACTGTGATAGATGTATCT 57.139 33.333 10.89 0.00 40.86 1.98
4418 7593 3.076621 CCTAGTTGCAAGCTGTGATGAA 58.923 45.455 0.00 0.00 0.00 2.57
4419 7594 3.120060 CCTAGTTGCAAGCTGTGATGAAC 60.120 47.826 0.00 0.00 0.00 3.18
4420 7595 2.579873 AGTTGCAAGCTGTGATGAACT 58.420 42.857 0.00 0.00 0.00 3.01
4421 7596 2.551459 AGTTGCAAGCTGTGATGAACTC 59.449 45.455 0.00 0.00 0.00 3.01
4422 7597 2.259266 TGCAAGCTGTGATGAACTCA 57.741 45.000 0.00 0.00 0.00 3.41
4466 7641 3.451526 CTCGAGTTGCTGCAATCTCATA 58.548 45.455 27.89 19.97 0.00 2.15
4468 7643 5.200368 TCGAGTTGCTGCAATCTCATATA 57.800 39.130 27.89 16.20 0.00 0.86
4469 7644 4.984785 TCGAGTTGCTGCAATCTCATATAC 59.015 41.667 27.89 13.56 0.00 1.47
4470 7645 4.987285 CGAGTTGCTGCAATCTCATATACT 59.013 41.667 27.89 16.99 0.00 2.12
4471 7646 5.118357 CGAGTTGCTGCAATCTCATATACTC 59.882 44.000 27.89 21.37 0.00 2.59
4548 7727 6.269769 GCATTGGGAATAAATAGGGATTTGGA 59.730 38.462 0.00 0.00 35.96 3.53
4624 7803 3.963733 GGGTACCGCCTACCTTTTT 57.036 52.632 5.65 0.00 44.34 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.587289 TCATGTTTTCAACTTTGTAGTGGC 58.413 37.500 0.00 0.00 34.01 5.01
1 2 9.743057 TTAATCATGTTTTCAACTTTGTAGTGG 57.257 29.630 0.00 0.00 34.01 4.00
50 51 2.472861 GAGTCGTCATCGCCATAATGTG 59.527 50.000 0.00 0.00 36.96 3.21
51 52 2.362397 AGAGTCGTCATCGCCATAATGT 59.638 45.455 0.00 0.00 36.96 2.71
52 53 3.018598 AGAGTCGTCATCGCCATAATG 57.981 47.619 0.00 0.00 36.96 1.90
53 54 3.735237 AAGAGTCGTCATCGCCATAAT 57.265 42.857 0.00 0.00 36.96 1.28
54 55 3.186909 CAAAGAGTCGTCATCGCCATAA 58.813 45.455 0.00 0.00 36.96 1.90
55 56 2.165641 ACAAAGAGTCGTCATCGCCATA 59.834 45.455 0.00 0.00 36.96 2.74
56 57 1.066858 ACAAAGAGTCGTCATCGCCAT 60.067 47.619 0.00 0.00 36.96 4.40
57 58 0.317160 ACAAAGAGTCGTCATCGCCA 59.683 50.000 0.00 0.00 36.96 5.69
58 59 1.429463 AACAAAGAGTCGTCATCGCC 58.571 50.000 0.00 0.00 36.96 5.54
59 60 3.218398 CAAAACAAAGAGTCGTCATCGC 58.782 45.455 0.00 0.00 36.96 4.58
60 61 4.203828 CACAAAACAAAGAGTCGTCATCG 58.796 43.478 0.00 0.00 38.55 3.84
61 62 3.968724 GCACAAAACAAAGAGTCGTCATC 59.031 43.478 0.00 0.00 0.00 2.92
62 63 3.376859 TGCACAAAACAAAGAGTCGTCAT 59.623 39.130 0.00 0.00 0.00 3.06
63 64 2.744741 TGCACAAAACAAAGAGTCGTCA 59.255 40.909 0.00 0.00 0.00 4.35
64 65 3.098636 GTGCACAAAACAAAGAGTCGTC 58.901 45.455 13.17 0.00 0.00 4.20
65 66 2.486203 TGTGCACAAAACAAAGAGTCGT 59.514 40.909 19.28 0.00 0.00 4.34
66 67 3.129852 TGTGCACAAAACAAAGAGTCG 57.870 42.857 19.28 0.00 0.00 4.18
67 68 4.268405 CCATTGTGCACAAAACAAAGAGTC 59.732 41.667 34.06 0.00 40.69 3.36
68 69 4.183101 CCATTGTGCACAAAACAAAGAGT 58.817 39.130 34.06 13.22 40.69 3.24
69 70 4.183101 ACCATTGTGCACAAAACAAAGAG 58.817 39.130 34.06 18.18 40.69 2.85
70 71 4.199432 ACCATTGTGCACAAAACAAAGA 57.801 36.364 34.06 11.30 40.69 2.52
71 72 4.943142 AACCATTGTGCACAAAACAAAG 57.057 36.364 34.06 20.33 40.69 2.77
72 73 4.327357 CGTAACCATTGTGCACAAAACAAA 59.673 37.500 34.06 17.80 40.69 2.83
73 74 3.859961 CGTAACCATTGTGCACAAAACAA 59.140 39.130 34.06 13.69 41.50 2.83
74 75 3.439293 CGTAACCATTGTGCACAAAACA 58.561 40.909 34.06 14.11 39.55 2.83
75 76 2.792116 CCGTAACCATTGTGCACAAAAC 59.208 45.455 34.06 23.28 39.55 2.43
76 77 2.799917 GCCGTAACCATTGTGCACAAAA 60.800 45.455 34.06 15.32 39.55 2.44
77 78 1.269309 GCCGTAACCATTGTGCACAAA 60.269 47.619 34.06 16.23 39.55 2.83
78 79 0.312416 GCCGTAACCATTGTGCACAA 59.688 50.000 32.78 32.78 40.51 3.33
79 80 1.519751 GGCCGTAACCATTGTGCACA 61.520 55.000 17.42 17.42 0.00 4.57
80 81 1.211709 GGCCGTAACCATTGTGCAC 59.788 57.895 10.75 10.75 0.00 4.57
81 82 1.974343 GGGCCGTAACCATTGTGCA 60.974 57.895 0.00 0.00 0.00 4.57
82 83 2.706834 GGGGCCGTAACCATTGTGC 61.707 63.158 0.00 0.00 0.00 4.57
83 84 0.253610 TAGGGGCCGTAACCATTGTG 59.746 55.000 2.89 0.00 0.00 3.33
84 85 1.218844 ATAGGGGCCGTAACCATTGT 58.781 50.000 10.40 0.00 0.00 2.71
85 86 3.713826 ATATAGGGGCCGTAACCATTG 57.286 47.619 10.40 0.00 0.00 2.82
86 87 4.411212 GGATATATAGGGGCCGTAACCATT 59.589 45.833 10.40 0.00 0.00 3.16
87 88 3.971971 GGATATATAGGGGCCGTAACCAT 59.028 47.826 10.40 6.79 0.00 3.55
88 89 3.246057 TGGATATATAGGGGCCGTAACCA 60.246 47.826 10.40 11.44 0.00 3.67
89 90 3.377573 TGGATATATAGGGGCCGTAACC 58.622 50.000 10.40 9.27 0.00 2.85
90 91 4.407945 ACATGGATATATAGGGGCCGTAAC 59.592 45.833 10.40 0.54 0.00 2.50
91 92 4.627015 ACATGGATATATAGGGGCCGTAA 58.373 43.478 10.40 0.63 0.00 3.18
92 93 4.274794 ACATGGATATATAGGGGCCGTA 57.725 45.455 8.62 8.62 0.00 4.02
93 94 3.130734 ACATGGATATATAGGGGCCGT 57.869 47.619 3.37 3.37 0.00 5.68
94 95 5.611374 CTTTACATGGATATATAGGGGCCG 58.389 45.833 0.00 0.00 0.00 6.13
95 96 5.377478 GCTTTACATGGATATATAGGGGCC 58.623 45.833 0.00 0.00 0.00 5.80
96 97 5.057149 CGCTTTACATGGATATATAGGGGC 58.943 45.833 0.00 0.00 0.00 5.80
97 98 6.049149 CACGCTTTACATGGATATATAGGGG 58.951 44.000 0.00 0.00 0.00 4.79
98 99 6.640518 ACACGCTTTACATGGATATATAGGG 58.359 40.000 0.00 0.00 0.00 3.53
99 100 8.547967 AAACACGCTTTACATGGATATATAGG 57.452 34.615 0.00 0.00 0.00 2.57
106 107 9.730420 GAAATATAAAACACGCTTTACATGGAT 57.270 29.630 0.00 0.00 0.00 3.41
107 108 8.731605 TGAAATATAAAACACGCTTTACATGGA 58.268 29.630 0.00 0.00 0.00 3.41
108 109 8.903570 TGAAATATAAAACACGCTTTACATGG 57.096 30.769 0.00 0.00 0.00 3.66
114 115 9.433317 CGTCATATGAAATATAAAACACGCTTT 57.567 29.630 7.07 0.00 37.44 3.51
115 116 8.822855 TCGTCATATGAAATATAAAACACGCTT 58.177 29.630 7.07 0.00 37.44 4.68
116 117 8.273557 GTCGTCATATGAAATATAAAACACGCT 58.726 33.333 7.07 0.00 37.44 5.07
117 118 8.273557 AGTCGTCATATGAAATATAAAACACGC 58.726 33.333 7.07 0.39 37.44 5.34
118 119 9.779237 GAGTCGTCATATGAAATATAAAACACG 57.221 33.333 7.07 3.01 37.44 4.49
121 122 9.798885 GCAGAGTCGTCATATGAAATATAAAAC 57.201 33.333 7.07 0.00 37.44 2.43
122 123 9.764363 AGCAGAGTCGTCATATGAAATATAAAA 57.236 29.630 7.07 0.00 37.44 1.52
126 127 9.935241 ATTTAGCAGAGTCGTCATATGAAATAT 57.065 29.630 7.07 0.00 41.02 1.28
127 128 9.764363 AATTTAGCAGAGTCGTCATATGAAATA 57.236 29.630 7.07 0.00 0.00 1.40
128 129 8.554528 CAATTTAGCAGAGTCGTCATATGAAAT 58.445 33.333 7.07 0.00 0.00 2.17
129 130 7.465916 GCAATTTAGCAGAGTCGTCATATGAAA 60.466 37.037 7.07 0.00 0.00 2.69
130 131 6.018751 GCAATTTAGCAGAGTCGTCATATGAA 60.019 38.462 7.07 0.00 0.00 2.57
131 132 5.463392 GCAATTTAGCAGAGTCGTCATATGA 59.537 40.000 0.00 0.00 0.00 2.15
132 133 5.464722 AGCAATTTAGCAGAGTCGTCATATG 59.535 40.000 0.00 0.00 36.85 1.78
133 134 5.605534 AGCAATTTAGCAGAGTCGTCATAT 58.394 37.500 0.00 0.00 36.85 1.78
134 135 5.011090 AGCAATTTAGCAGAGTCGTCATA 57.989 39.130 0.00 0.00 36.85 2.15
135 136 3.866651 AGCAATTTAGCAGAGTCGTCAT 58.133 40.909 0.00 0.00 36.85 3.06
136 137 3.319137 AGCAATTTAGCAGAGTCGTCA 57.681 42.857 0.00 0.00 36.85 4.35
137 138 3.929610 AGAAGCAATTTAGCAGAGTCGTC 59.070 43.478 0.00 0.00 36.85 4.20
138 139 3.931578 AGAAGCAATTTAGCAGAGTCGT 58.068 40.909 0.00 0.00 36.85 4.34
139 140 5.050499 CCATAGAAGCAATTTAGCAGAGTCG 60.050 44.000 0.00 0.00 36.85 4.18
140 141 5.819901 ACCATAGAAGCAATTTAGCAGAGTC 59.180 40.000 0.00 0.00 36.85 3.36
141 142 5.749462 ACCATAGAAGCAATTTAGCAGAGT 58.251 37.500 0.00 0.00 36.85 3.24
142 143 6.541641 AGAACCATAGAAGCAATTTAGCAGAG 59.458 38.462 0.00 0.00 36.85 3.35
143 144 6.317140 CAGAACCATAGAAGCAATTTAGCAGA 59.683 38.462 0.00 0.00 36.85 4.26
144 145 6.094603 ACAGAACCATAGAAGCAATTTAGCAG 59.905 38.462 0.00 0.00 36.85 4.24
145 146 5.945784 ACAGAACCATAGAAGCAATTTAGCA 59.054 36.000 0.00 0.00 36.85 3.49
146 147 6.442513 ACAGAACCATAGAAGCAATTTAGC 57.557 37.500 0.00 0.00 0.00 3.09
158 159 6.040616 ACGTAGGGAAGAATACAGAACCATAG 59.959 42.308 0.00 0.00 0.00 2.23
164 165 5.733620 AACACGTAGGGAAGAATACAGAA 57.266 39.130 0.00 0.00 0.00 3.02
165 166 5.011329 ACAAACACGTAGGGAAGAATACAGA 59.989 40.000 0.00 0.00 0.00 3.41
173 174 4.083484 GGATGAAACAAACACGTAGGGAAG 60.083 45.833 0.00 0.00 0.00 3.46
176 177 3.142951 TGGATGAAACAAACACGTAGGG 58.857 45.455 0.00 0.00 0.00 3.53
177 178 4.822036 TTGGATGAAACAAACACGTAGG 57.178 40.909 0.00 0.00 0.00 3.18
196 197 0.435008 GTCGTACGCAGAGCAGTTTG 59.565 55.000 11.24 0.00 0.00 2.93
209 210 3.170585 GTCCGTGCGCTGTCGTAC 61.171 66.667 9.73 4.59 45.71 3.67
231 232 0.604511 ACCCGGTTTGTGAACGATCC 60.605 55.000 0.00 0.00 36.61 3.36
261 266 3.064408 CAGGACACATCATTCATGGAACG 59.936 47.826 0.00 0.00 36.72 3.95
271 276 6.039270 TCGTTTTCTTTTTCAGGACACATCAT 59.961 34.615 0.00 0.00 0.00 2.45
272 277 5.355630 TCGTTTTCTTTTTCAGGACACATCA 59.644 36.000 0.00 0.00 0.00 3.07
273 278 5.816919 TCGTTTTCTTTTTCAGGACACATC 58.183 37.500 0.00 0.00 0.00 3.06
274 279 5.828299 TCGTTTTCTTTTTCAGGACACAT 57.172 34.783 0.00 0.00 0.00 3.21
278 283 6.366604 TGGTTTTTCGTTTTCTTTTTCAGGAC 59.633 34.615 0.00 0.00 0.00 3.85
337 3429 1.968540 GGTGTCTGTCTGCAAGGGC 60.969 63.158 0.00 0.00 41.68 5.19
401 3493 4.008330 AGTGACAGTGCATACTACGTACT 58.992 43.478 0.00 0.00 34.74 2.73
402 3494 4.352600 AGTGACAGTGCATACTACGTAC 57.647 45.455 0.00 0.00 34.74 3.67
403 3495 5.505159 GCATAGTGACAGTGCATACTACGTA 60.505 44.000 7.23 0.00 38.68 3.57
404 3496 4.733815 GCATAGTGACAGTGCATACTACGT 60.734 45.833 7.23 0.00 38.68 3.57
405 3497 3.731216 GCATAGTGACAGTGCATACTACG 59.269 47.826 7.23 0.00 38.68 3.51
406 3498 4.682787 TGCATAGTGACAGTGCATACTAC 58.317 43.478 10.20 0.00 43.30 2.73
408 3500 3.893326 TGCATAGTGACAGTGCATACT 57.107 42.857 10.20 0.00 43.30 2.12
451 3550 2.412089 GAGCATGTCAGTACGGTTGAAC 59.588 50.000 0.00 0.00 0.00 3.18
463 3562 4.758251 CCACGGCCGAGCATGTCA 62.758 66.667 35.90 0.00 0.00 3.58
474 3573 2.027625 CGGAGAAACTGACCACGGC 61.028 63.158 0.00 0.00 0.00 5.68
475 3574 0.944311 CACGGAGAAACTGACCACGG 60.944 60.000 0.00 0.00 0.00 4.94
477 3576 0.391597 TCCACGGAGAAACTGACCAC 59.608 55.000 0.00 0.00 0.00 4.16
478 3577 1.124780 TTCCACGGAGAAACTGACCA 58.875 50.000 0.00 0.00 0.00 4.02
480 3579 2.234300 TGTTCCACGGAGAAACTGAC 57.766 50.000 0.00 0.00 0.00 3.51
481 3580 2.940410 GTTTGTTCCACGGAGAAACTGA 59.060 45.455 12.35 0.00 31.36 3.41
483 3582 2.943033 CTGTTTGTTCCACGGAGAAACT 59.057 45.455 17.22 0.00 33.34 2.66
524 3630 4.868171 GCGGGTTGTTTTTCTTTCTTTTCT 59.132 37.500 0.00 0.00 0.00 2.52
534 3640 1.008194 GTCGGGCGGGTTGTTTTTC 60.008 57.895 0.00 0.00 0.00 2.29
555 3662 0.251341 GGTGACTTGACTGGGCCATT 60.251 55.000 6.72 0.00 0.00 3.16
561 3668 0.535102 GGTGGTGGTGACTTGACTGG 60.535 60.000 0.00 0.00 0.00 4.00
698 3812 0.165944 GGAACACACGGAGAAATGCG 59.834 55.000 0.00 0.00 0.00 4.73
739 3853 2.270527 GGGGTTGGAGCTCAGAGC 59.729 66.667 15.25 15.25 42.84 4.09
776 3891 1.067295 TCAGTTGGAGCTTGTGGGAT 58.933 50.000 0.00 0.00 0.00 3.85
825 3952 3.372554 GAGGCGGAAGGGAGGAACG 62.373 68.421 0.00 0.00 0.00 3.95
849 3976 4.760047 AGCGGATGCACACGGGAC 62.760 66.667 12.96 0.00 46.23 4.46
850 3977 3.950794 GAAGCGGATGCACACGGGA 62.951 63.158 12.96 0.00 46.23 5.14
852 3979 2.741985 TGAAGCGGATGCACACGG 60.742 61.111 12.96 5.21 46.23 4.94
853 3980 0.735978 TACTGAAGCGGATGCACACG 60.736 55.000 7.44 7.44 46.23 4.49
854 3981 1.438651 TTACTGAAGCGGATGCACAC 58.561 50.000 0.00 0.00 46.23 3.82
855 3982 2.401583 ATTACTGAAGCGGATGCACA 57.598 45.000 0.00 0.00 46.23 4.57
863 3990 1.594331 GGGGGCTAATTACTGAAGCG 58.406 55.000 0.00 0.00 37.11 4.68
911 4038 1.462616 CTGATTTGGGCACGGATTGA 58.537 50.000 0.00 0.00 0.00 2.57
930 4057 2.814913 ATTCGGTCGGCCAAGAACCC 62.815 60.000 6.96 0.00 34.09 4.11
967 4096 0.529555 GAGCCGAATGCCTCAGTCTC 60.530 60.000 0.00 0.00 42.71 3.36
1386 4515 3.263503 CTCGTCGGCGACCTTGTGA 62.264 63.158 31.86 21.56 42.81 3.58
1612 4741 0.250338 AACTCCCTGCCAACTTCGAC 60.250 55.000 0.00 0.00 0.00 4.20
1643 4772 1.162800 GCCGATGACCTTCTGGATGC 61.163 60.000 0.00 0.00 37.04 3.91
1743 4872 0.100325 CGTCCAGCAGCAACACAAAA 59.900 50.000 0.00 0.00 0.00 2.44
1842 4971 1.139734 CACGTCCTCCATCCTCGTG 59.860 63.158 0.00 0.00 43.77 4.35
1933 5062 2.805353 CTCGCCGACCTTGTCACG 60.805 66.667 0.00 0.00 34.53 4.35
1991 5120 0.409092 ACATTTCATGGCCACTCCCA 59.591 50.000 8.16 0.00 39.65 4.37
2049 5178 0.961857 CAGTGTGCTTGCTGGCCATA 60.962 55.000 5.51 0.00 0.00 2.74
2055 5184 1.202325 TCTTTTGCAGTGTGCTTGCTG 60.202 47.619 0.00 0.00 45.31 4.41
2094 5223 4.503741 CCATGGGGCAATATTTAGAACG 57.496 45.455 2.85 0.00 0.00 3.95
2135 5264 1.134367 TGAGAGGCATAAGAACGTCCG 59.866 52.381 0.00 0.00 0.00 4.79
2140 5269 3.866651 TGCTCTTGAGAGGCATAAGAAC 58.133 45.455 9.87 0.00 42.29 3.01
2358 5487 4.274950 TCGTCTTTACCTTTTTCCAGCAAG 59.725 41.667 0.00 0.00 0.00 4.01
2523 5652 1.135717 CGCATGAAACAAATCCGCTCA 60.136 47.619 0.00 0.00 0.00 4.26
2765 5894 2.042464 CTAGCTCCCTTGGCAGTGATA 58.958 52.381 0.00 0.00 0.00 2.15
2902 6031 0.596577 TCACCGACTTTCCAGTCTCG 59.403 55.000 1.12 0.00 46.67 4.04
3015 6144 2.598632 GCGATATGACCGTGCCAGC 61.599 63.158 0.00 0.00 0.00 4.85
3021 6150 2.335369 GCGAGGCGATATGACCGT 59.665 61.111 0.00 0.00 0.00 4.83
3090 6219 1.377856 GTGGCTTGAAGGGAGCTCC 60.378 63.158 25.59 25.59 40.01 4.70
3148 6277 3.063510 AGCTAGATTGCTGCAGTTTGA 57.936 42.857 16.64 0.00 42.33 2.69
3168 6297 0.612744 TGCCGTCAATGATCACCTCA 59.387 50.000 0.00 0.00 38.53 3.86
3236 6365 3.162666 TCACACTCGATAACTTCACCCT 58.837 45.455 0.00 0.00 0.00 4.34
3427 6556 0.161870 GCAGCTTGTTCGTCTTCGTC 59.838 55.000 0.00 0.00 38.33 4.20
3471 6600 4.918273 AGTTCCTTAAGTTTAGGGAAGGGT 59.082 41.667 13.79 2.47 45.79 4.34
3496 6625 2.025887 ACTTTGGTAGGCCTTGGAGATG 60.026 50.000 12.58 0.00 35.27 2.90
3570 6699 1.212616 GACAATCGGCGATCTTGAGG 58.787 55.000 24.20 10.83 0.00 3.86
3581 6710 1.089920 CTTGAGGCTTGGACAATCGG 58.910 55.000 0.00 0.00 0.00 4.18
3602 6731 4.127040 CGGCAGCGAGTCTGAGCT 62.127 66.667 0.00 0.00 45.72 4.09
3614 6743 1.004560 TTCTCCAGTTCTGCGGCAG 60.005 57.895 23.72 23.72 0.00 4.85
3621 6750 4.437239 CGCATTGTATCTTCTCCAGTTCT 58.563 43.478 0.00 0.00 0.00 3.01
3627 6756 1.789464 CTCGCGCATTGTATCTTCTCC 59.211 52.381 8.75 0.00 0.00 3.71
3628 6757 1.789464 CCTCGCGCATTGTATCTTCTC 59.211 52.381 8.75 0.00 0.00 2.87
3631 6760 0.464036 TCCCTCGCGCATTGTATCTT 59.536 50.000 8.75 0.00 0.00 2.40
3632 6761 0.249489 GTCCCTCGCGCATTGTATCT 60.249 55.000 8.75 0.00 0.00 1.98
3716 6845 8.749499 CAAAAACTGAATTCACTCACATTCTTC 58.251 33.333 3.38 0.00 31.64 2.87
3721 6850 4.977963 CGCAAAAACTGAATTCACTCACAT 59.022 37.500 3.38 0.00 0.00 3.21
3722 6851 4.142491 ACGCAAAAACTGAATTCACTCACA 60.142 37.500 3.38 0.00 0.00 3.58
3723 6852 4.351192 ACGCAAAAACTGAATTCACTCAC 58.649 39.130 3.38 0.00 0.00 3.51
3743 6872 6.102663 TCAAATTTTGGGCCAACATAATACG 58.897 36.000 20.79 10.69 0.00 3.06
3745 6874 7.398618 TCTCTCAAATTTTGGGCCAACATAATA 59.601 33.333 20.79 0.00 0.00 0.98
3766 6895 2.680339 GCCTGGCAAAAGTGTATCTCTC 59.320 50.000 15.17 0.00 0.00 3.20
3776 6905 0.940991 GACGCAAAGCCTGGCAAAAG 60.941 55.000 22.65 10.29 0.00 2.27
3796 6936 3.858238 CGAAACTAGTAGAGAAAAGCCGG 59.142 47.826 3.59 0.00 0.00 6.13
3797 6937 4.730657 TCGAAACTAGTAGAGAAAAGCCG 58.269 43.478 3.59 0.00 0.00 5.52
3799 6939 7.870588 TTCTTCGAAACTAGTAGAGAAAAGC 57.129 36.000 3.59 0.00 0.00 3.51
3809 6949 9.946165 CCTGTTTTTATTTTCTTCGAAACTAGT 57.054 29.630 0.00 0.00 0.00 2.57
3811 6951 8.626526 AGCCTGTTTTTATTTTCTTCGAAACTA 58.373 29.630 0.00 0.00 0.00 2.24
3812 6952 7.489160 AGCCTGTTTTTATTTTCTTCGAAACT 58.511 30.769 0.00 0.00 0.00 2.66
3859 7008 9.308318 GTACCAAGCATCTTTTTGAAAAAGTAA 57.692 29.630 24.67 11.23 0.00 2.24
3867 7016 6.428465 TCAATACGTACCAAGCATCTTTTTGA 59.572 34.615 0.00 0.00 0.00 2.69
3868 7017 6.607689 TCAATACGTACCAAGCATCTTTTTG 58.392 36.000 0.00 0.00 0.00 2.44
3884 7033 6.398095 TGAATTCAGTGACTGATCAATACGT 58.602 36.000 16.98 0.00 40.39 3.57
3885 7034 6.019237 CCTGAATTCAGTGACTGATCAATACG 60.019 42.308 29.03 6.22 40.39 3.06
3886 7035 6.259608 CCCTGAATTCAGTGACTGATCAATAC 59.740 42.308 29.03 6.05 40.39 1.89
3887 7036 6.156775 TCCCTGAATTCAGTGACTGATCAATA 59.843 38.462 29.03 0.73 40.39 1.90
3888 7037 5.045359 TCCCTGAATTCAGTGACTGATCAAT 60.045 40.000 29.03 4.20 40.39 2.57
3918 7067 2.440409 AGAATGATGACACAAGGGCAC 58.560 47.619 0.00 0.00 0.00 5.01
3926 7075 7.254387 GCAGATCTCAAACTAGAATGATGACAC 60.254 40.741 0.00 0.55 0.00 3.67
3927 7076 6.760298 GCAGATCTCAAACTAGAATGATGACA 59.240 38.462 0.00 0.00 0.00 3.58
3929 7078 6.760298 GTGCAGATCTCAAACTAGAATGATGA 59.240 38.462 0.00 1.32 0.00 2.92
3930 7079 6.537660 TGTGCAGATCTCAAACTAGAATGATG 59.462 38.462 0.00 0.00 0.00 3.07
3931 7080 6.647229 TGTGCAGATCTCAAACTAGAATGAT 58.353 36.000 0.00 0.00 0.00 2.45
3933 7082 5.873712 ACTGTGCAGATCTCAAACTAGAATG 59.126 40.000 6.17 0.00 0.00 2.67
3934 7083 5.873712 CACTGTGCAGATCTCAAACTAGAAT 59.126 40.000 6.17 0.00 0.00 2.40
3935 7084 5.233225 CACTGTGCAGATCTCAAACTAGAA 58.767 41.667 6.17 0.00 0.00 2.10
3936 7085 4.322273 CCACTGTGCAGATCTCAAACTAGA 60.322 45.833 6.17 0.00 0.00 2.43
3937 7086 3.931468 CCACTGTGCAGATCTCAAACTAG 59.069 47.826 6.17 0.00 0.00 2.57
3938 7087 3.324846 ACCACTGTGCAGATCTCAAACTA 59.675 43.478 6.17 0.00 0.00 2.24
3940 7089 2.225019 CACCACTGTGCAGATCTCAAAC 59.775 50.000 6.17 0.00 35.31 2.93
3941 7090 2.497138 CACCACTGTGCAGATCTCAAA 58.503 47.619 6.17 0.00 35.31 2.69
3942 7091 2.174363 CACCACTGTGCAGATCTCAA 57.826 50.000 6.17 0.00 35.31 3.02
3943 7092 3.921257 CACCACTGTGCAGATCTCA 57.079 52.632 6.17 0.00 35.31 3.27
3954 7103 0.035881 ACATCTGACAGGCACCACTG 59.964 55.000 1.81 0.00 44.03 3.66
3955 7104 0.767375 AACATCTGACAGGCACCACT 59.233 50.000 1.81 0.00 0.00 4.00
3956 7105 1.267806 CAAACATCTGACAGGCACCAC 59.732 52.381 1.81 0.00 0.00 4.16
3957 7106 1.142667 TCAAACATCTGACAGGCACCA 59.857 47.619 1.81 0.00 0.00 4.17
3958 7107 1.808945 CTCAAACATCTGACAGGCACC 59.191 52.381 1.81 0.00 0.00 5.01
3959 7108 2.498167 ACTCAAACATCTGACAGGCAC 58.502 47.619 1.81 0.00 0.00 5.01
3960 7109 2.936919 ACTCAAACATCTGACAGGCA 57.063 45.000 1.81 0.00 0.00 4.75
3961 7110 3.141398 TGAACTCAAACATCTGACAGGC 58.859 45.455 1.81 0.00 0.00 4.85
3962 7111 3.750130 CCTGAACTCAAACATCTGACAGG 59.250 47.826 1.81 0.00 36.83 4.00
3963 7112 3.750130 CCCTGAACTCAAACATCTGACAG 59.250 47.826 0.00 0.00 0.00 3.51
3964 7113 3.390967 TCCCTGAACTCAAACATCTGACA 59.609 43.478 0.00 0.00 0.00 3.58
3965 7114 4.008074 TCCCTGAACTCAAACATCTGAC 57.992 45.455 0.00 0.00 0.00 3.51
3966 7115 4.916041 ATCCCTGAACTCAAACATCTGA 57.084 40.909 0.00 0.00 0.00 3.27
3967 7116 5.008415 GCATATCCCTGAACTCAAACATCTG 59.992 44.000 0.00 0.00 0.00 2.90
3968 7117 5.128919 GCATATCCCTGAACTCAAACATCT 58.871 41.667 0.00 0.00 0.00 2.90
3969 7118 4.276926 GGCATATCCCTGAACTCAAACATC 59.723 45.833 0.00 0.00 0.00 3.06
3970 7119 4.210331 GGCATATCCCTGAACTCAAACAT 58.790 43.478 0.00 0.00 0.00 2.71
3971 7120 3.620488 GGCATATCCCTGAACTCAAACA 58.380 45.455 0.00 0.00 0.00 2.83
3984 7133 2.107204 AGGATGACACAAGGGCATATCC 59.893 50.000 0.00 0.00 34.29 2.59
3985 7134 3.406764 GAGGATGACACAAGGGCATATC 58.593 50.000 0.00 0.00 0.00 1.63
3986 7135 2.107204 GGAGGATGACACAAGGGCATAT 59.893 50.000 0.00 0.00 0.00 1.78
3987 7136 1.490490 GGAGGATGACACAAGGGCATA 59.510 52.381 0.00 0.00 0.00 3.14
3988 7137 0.257039 GGAGGATGACACAAGGGCAT 59.743 55.000 0.00 0.00 0.00 4.40
3989 7138 0.842030 AGGAGGATGACACAAGGGCA 60.842 55.000 0.00 0.00 0.00 5.36
3990 7139 0.329596 AAGGAGGATGACACAAGGGC 59.670 55.000 0.00 0.00 0.00 5.19
3991 7140 2.887151 AAAGGAGGATGACACAAGGG 57.113 50.000 0.00 0.00 0.00 3.95
3992 7141 4.026356 AGAAAAGGAGGATGACACAAGG 57.974 45.455 0.00 0.00 0.00 3.61
3993 7142 5.312079 AGAAGAAAAGGAGGATGACACAAG 58.688 41.667 0.00 0.00 0.00 3.16
3994 7143 5.310409 AGAAGAAAAGGAGGATGACACAA 57.690 39.130 0.00 0.00 0.00 3.33
3995 7144 4.982241 AGAAGAAAAGGAGGATGACACA 57.018 40.909 0.00 0.00 0.00 3.72
3996 7145 4.457257 CCAAGAAGAAAAGGAGGATGACAC 59.543 45.833 0.00 0.00 0.00 3.67
3997 7146 4.350816 TCCAAGAAGAAAAGGAGGATGACA 59.649 41.667 0.00 0.00 0.00 3.58
3998 7147 4.911390 TCCAAGAAGAAAAGGAGGATGAC 58.089 43.478 0.00 0.00 0.00 3.06
3999 7148 4.846367 TCTCCAAGAAGAAAAGGAGGATGA 59.154 41.667 7.41 0.00 46.02 2.92
4000 7149 5.171339 TCTCCAAGAAGAAAAGGAGGATG 57.829 43.478 7.41 0.00 46.02 3.51
4001 7150 6.400096 AATCTCCAAGAAGAAAAGGAGGAT 57.600 37.500 7.41 0.00 46.02 3.24
4002 7151 5.850046 AATCTCCAAGAAGAAAAGGAGGA 57.150 39.130 7.41 0.00 46.02 3.71
4003 7152 6.039159 GCATAATCTCCAAGAAGAAAAGGAGG 59.961 42.308 7.41 0.00 46.02 4.30
4005 7154 6.725364 AGCATAATCTCCAAGAAGAAAAGGA 58.275 36.000 0.00 0.00 0.00 3.36
4006 7155 7.401955 AAGCATAATCTCCAAGAAGAAAAGG 57.598 36.000 0.00 0.00 0.00 3.11
4007 7156 9.136952 CAAAAGCATAATCTCCAAGAAGAAAAG 57.863 33.333 0.00 0.00 0.00 2.27
4008 7157 8.641541 ACAAAAGCATAATCTCCAAGAAGAAAA 58.358 29.630 0.00 0.00 0.00 2.29
4009 7158 8.181904 ACAAAAGCATAATCTCCAAGAAGAAA 57.818 30.769 0.00 0.00 0.00 2.52
4017 7166 7.224362 CACACAAAAACAAAAGCATAATCTCCA 59.776 33.333 0.00 0.00 0.00 3.86
4018 7167 7.307337 CCACACAAAAACAAAAGCATAATCTCC 60.307 37.037 0.00 0.00 0.00 3.71
4045 7194 3.564235 TCAGATGTGCATTTGTTCAGC 57.436 42.857 0.00 0.00 0.00 4.26
4049 7198 8.002984 TGATATTCATCAGATGTGCATTTGTT 57.997 30.769 10.34 0.00 36.22 2.83
4074 7237 5.636903 AGATATTCATACCAACACCTGCT 57.363 39.130 0.00 0.00 0.00 4.24
4136 7307 0.680601 TCAGCCATCACCCGTACGTA 60.681 55.000 15.21 0.00 0.00 3.57
4137 7308 1.327690 ATCAGCCATCACCCGTACGT 61.328 55.000 15.21 0.00 0.00 3.57
4138 7309 0.875908 CATCAGCCATCACCCGTACG 60.876 60.000 8.69 8.69 0.00 3.67
4139 7310 1.160329 GCATCAGCCATCACCCGTAC 61.160 60.000 0.00 0.00 33.58 3.67
4231 7402 0.329261 TTCCGAACGGAGGGAGTAGA 59.671 55.000 15.34 0.00 46.06 2.59
4232 7403 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
4233 7404 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
4234 7405 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
4235 7406 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4236 7407 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4237 7408 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4238 7409 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4239 7410 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
4240 7411 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
4241 7412 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
4242 7413 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
4243 7414 1.060122 CCGCGACAAGTAATTCCGAAC 59.940 52.381 8.23 0.00 0.00 3.95
4244 7415 1.067706 TCCGCGACAAGTAATTCCGAA 60.068 47.619 8.23 0.00 0.00 4.30
4245 7416 0.527113 TCCGCGACAAGTAATTCCGA 59.473 50.000 8.23 0.00 0.00 4.55
4246 7417 1.352114 TTCCGCGACAAGTAATTCCG 58.648 50.000 8.23 0.00 0.00 4.30
4247 7418 3.486875 CCATTTCCGCGACAAGTAATTCC 60.487 47.826 8.23 0.00 0.00 3.01
4248 7419 3.372822 TCCATTTCCGCGACAAGTAATTC 59.627 43.478 8.23 0.00 0.00 2.17
4249 7420 3.340034 TCCATTTCCGCGACAAGTAATT 58.660 40.909 8.23 0.00 0.00 1.40
4250 7421 2.980568 TCCATTTCCGCGACAAGTAAT 58.019 42.857 8.23 0.00 0.00 1.89
4251 7422 2.459060 TCCATTTCCGCGACAAGTAA 57.541 45.000 8.23 0.00 0.00 2.24
4252 7423 2.276201 CATCCATTTCCGCGACAAGTA 58.724 47.619 8.23 0.00 0.00 2.24
4253 7424 1.086696 CATCCATTTCCGCGACAAGT 58.913 50.000 8.23 0.00 0.00 3.16
4254 7425 1.086696 ACATCCATTTCCGCGACAAG 58.913 50.000 8.23 0.00 0.00 3.16
4255 7426 2.388310 TACATCCATTTCCGCGACAA 57.612 45.000 8.23 0.00 0.00 3.18
4256 7427 2.102420 AGATACATCCATTTCCGCGACA 59.898 45.455 8.23 0.00 0.00 4.35
4257 7428 2.755650 AGATACATCCATTTCCGCGAC 58.244 47.619 8.23 0.00 0.00 5.19
4258 7429 3.824443 TCTAGATACATCCATTTCCGCGA 59.176 43.478 8.23 0.00 0.00 5.87
4259 7430 3.921021 GTCTAGATACATCCATTTCCGCG 59.079 47.826 0.00 0.00 0.00 6.46
4260 7431 3.921021 CGTCTAGATACATCCATTTCCGC 59.079 47.826 0.00 0.00 0.00 5.54
4261 7432 5.122512 ACGTCTAGATACATCCATTTCCG 57.877 43.478 0.00 0.00 0.00 4.30
4262 7433 9.490379 AAAATACGTCTAGATACATCCATTTCC 57.510 33.333 0.00 0.00 0.00 3.13
4289 7460 9.826574 GTCTCGGATATAGATGTATCTAGAACT 57.173 37.037 0.00 0.00 42.20 3.01
4290 7461 9.602568 TGTCTCGGATATAGATGTATCTAGAAC 57.397 37.037 0.00 2.39 42.20 3.01
4292 7463 9.825109 CTTGTCTCGGATATAGATGTATCTAGA 57.175 37.037 7.57 0.00 42.20 2.43
4293 7464 9.607988 ACTTGTCTCGGATATAGATGTATCTAG 57.392 37.037 7.57 0.00 42.20 2.43
4295 7466 9.607988 CTACTTGTCTCGGATATAGATGTATCT 57.392 37.037 0.00 0.00 40.86 1.98
4296 7467 9.386010 ACTACTTGTCTCGGATATAGATGTATC 57.614 37.037 0.00 0.00 0.00 2.24
4297 7468 9.742144 AACTACTTGTCTCGGATATAGATGTAT 57.258 33.333 0.00 0.00 0.00 2.29
4298 7469 9.217278 GAACTACTTGTCTCGGATATAGATGTA 57.783 37.037 0.00 0.00 0.00 2.29
4299 7470 7.175293 GGAACTACTTGTCTCGGATATAGATGT 59.825 40.741 0.00 0.00 0.00 3.06
4300 7471 7.531716 GGAACTACTTGTCTCGGATATAGATG 58.468 42.308 0.00 0.00 0.00 2.90
4301 7472 6.372103 CGGAACTACTTGTCTCGGATATAGAT 59.628 42.308 0.00 0.00 0.00 1.98
4302 7473 5.699915 CGGAACTACTTGTCTCGGATATAGA 59.300 44.000 0.00 0.00 0.00 1.98
4303 7474 5.699915 TCGGAACTACTTGTCTCGGATATAG 59.300 44.000 0.00 0.00 0.00 1.31
4304 7475 5.614308 TCGGAACTACTTGTCTCGGATATA 58.386 41.667 0.00 0.00 0.00 0.86
4305 7476 4.458397 TCGGAACTACTTGTCTCGGATAT 58.542 43.478 0.00 0.00 0.00 1.63
4306 7477 3.877559 TCGGAACTACTTGTCTCGGATA 58.122 45.455 0.00 0.00 0.00 2.59
4307 7478 2.719739 TCGGAACTACTTGTCTCGGAT 58.280 47.619 0.00 0.00 0.00 4.18
4308 7479 2.189594 TCGGAACTACTTGTCTCGGA 57.810 50.000 0.00 0.00 0.00 4.55
4309 7480 2.593257 GTTCGGAACTACTTGTCTCGG 58.407 52.381 13.49 0.00 0.00 4.63
4310 7481 2.096069 TCGTTCGGAACTACTTGTCTCG 60.096 50.000 17.94 2.00 0.00 4.04
4311 7482 3.549299 TCGTTCGGAACTACTTGTCTC 57.451 47.619 17.94 0.00 0.00 3.36
4312 7483 3.567164 TCTTCGTTCGGAACTACTTGTCT 59.433 43.478 17.94 0.00 0.00 3.41
4313 7484 3.893720 TCTTCGTTCGGAACTACTTGTC 58.106 45.455 17.94 0.00 0.00 3.18
4314 7485 3.567164 TCTCTTCGTTCGGAACTACTTGT 59.433 43.478 17.94 0.00 0.00 3.16
4315 7486 4.156664 TCTCTTCGTTCGGAACTACTTG 57.843 45.455 17.94 3.19 0.00 3.16
4316 7487 3.819902 ACTCTCTTCGTTCGGAACTACTT 59.180 43.478 17.94 0.00 0.00 2.24
4317 7488 3.410508 ACTCTCTTCGTTCGGAACTACT 58.589 45.455 17.94 0.00 0.00 2.57
4318 7489 3.828060 ACTCTCTTCGTTCGGAACTAC 57.172 47.619 17.94 0.00 0.00 2.73
4319 7490 4.999950 AGTTACTCTCTTCGTTCGGAACTA 59.000 41.667 17.94 5.16 0.00 2.24
4320 7491 3.819902 AGTTACTCTCTTCGTTCGGAACT 59.180 43.478 17.94 0.33 0.00 3.01
4321 7492 3.913163 CAGTTACTCTCTTCGTTCGGAAC 59.087 47.826 10.83 10.83 0.00 3.62
4322 7493 3.567164 ACAGTTACTCTCTTCGTTCGGAA 59.433 43.478 0.00 0.00 0.00 4.30
4323 7494 3.058432 CACAGTTACTCTCTTCGTTCGGA 60.058 47.826 0.00 0.00 0.00 4.55
4324 7495 3.058432 TCACAGTTACTCTCTTCGTTCGG 60.058 47.826 0.00 0.00 0.00 4.30
4325 7496 4.143194 TCACAGTTACTCTCTTCGTTCG 57.857 45.455 0.00 0.00 0.00 3.95
4326 7497 7.074507 TCTATCACAGTTACTCTCTTCGTTC 57.925 40.000 0.00 0.00 0.00 3.95
4327 7498 7.121463 ACATCTATCACAGTTACTCTCTTCGTT 59.879 37.037 0.00 0.00 0.00 3.85
4328 7499 6.600032 ACATCTATCACAGTTACTCTCTTCGT 59.400 38.462 0.00 0.00 0.00 3.85
4329 7500 7.022055 ACATCTATCACAGTTACTCTCTTCG 57.978 40.000 0.00 0.00 0.00 3.79
4331 7502 9.860650 AGATACATCTATCACAGTTACTCTCTT 57.139 33.333 0.00 0.00 34.85 2.85
4332 7503 9.860650 AAGATACATCTATCACAGTTACTCTCT 57.139 33.333 0.00 0.00 35.76 3.10
4334 7505 9.860650 AGAAGATACATCTATCACAGTTACTCT 57.139 33.333 0.00 0.00 35.76 3.24
4336 7507 9.634021 TGAGAAGATACATCTATCACAGTTACT 57.366 33.333 0.00 0.00 35.76 2.24
4337 7508 9.672086 GTGAGAAGATACATCTATCACAGTTAC 57.328 37.037 21.33 4.77 44.66 2.50
4357 7528 5.869579 AGCCAAGTCTAAAATCTGTGAGAA 58.130 37.500 0.00 0.00 0.00 2.87
4432 7607 2.556534 ACTCGAGGTACGCAATACAC 57.443 50.000 18.41 0.00 42.26 2.90
4437 7612 0.666274 CAGCAACTCGAGGTACGCAA 60.666 55.000 18.41 0.00 42.26 4.85
4438 7613 1.080772 CAGCAACTCGAGGTACGCA 60.081 57.895 18.41 0.00 42.26 5.24
4439 7614 2.445438 GCAGCAACTCGAGGTACGC 61.445 63.158 18.41 11.25 42.26 4.42
4517 7692 5.068460 CCCTATTTATTCCCAATGCGTGAAA 59.932 40.000 0.00 0.00 0.00 2.69
4622 7801 2.487625 CGGTACCCCCTTGTCTCAAAAA 60.488 50.000 6.25 0.00 0.00 1.94
4623 7802 1.072648 CGGTACCCCCTTGTCTCAAAA 59.927 52.381 6.25 0.00 0.00 2.44
4624 7803 0.688487 CGGTACCCCCTTGTCTCAAA 59.312 55.000 6.25 0.00 0.00 2.69
4625 7804 1.833787 GCGGTACCCCCTTGTCTCAA 61.834 60.000 6.25 0.00 0.00 3.02
4626 7805 2.288025 GCGGTACCCCCTTGTCTCA 61.288 63.158 6.25 0.00 0.00 3.27
4627 7806 2.582978 GCGGTACCCCCTTGTCTC 59.417 66.667 6.25 0.00 0.00 3.36
4628 7807 2.172229 TAGGCGGTACCCCCTTGTCT 62.172 60.000 23.23 9.66 40.58 3.41
4629 7808 1.686800 TAGGCGGTACCCCCTTGTC 60.687 63.158 23.23 1.46 40.58 3.18
4630 7809 1.991722 GTAGGCGGTACCCCCTTGT 60.992 63.158 23.23 2.16 40.58 3.16
4631 7810 2.738938 GGTAGGCGGTACCCCCTTG 61.739 68.421 23.23 1.03 45.27 3.61
4632 7811 2.366034 GGTAGGCGGTACCCCCTT 60.366 66.667 23.23 7.96 45.27 3.95
4638 7817 0.175073 CAGTTGGAGGTAGGCGGTAC 59.825 60.000 0.00 0.00 0.00 3.34
4639 7818 0.974010 CCAGTTGGAGGTAGGCGGTA 60.974 60.000 0.00 0.00 37.39 4.02
4640 7819 2.291043 CCAGTTGGAGGTAGGCGGT 61.291 63.158 0.00 0.00 37.39 5.68
4641 7820 1.987855 TCCAGTTGGAGGTAGGCGG 60.988 63.158 0.00 0.00 39.78 6.13
4642 7821 1.218316 GTCCAGTTGGAGGTAGGCG 59.782 63.158 0.00 0.00 46.49 5.52
4643 7822 1.218316 CGTCCAGTTGGAGGTAGGC 59.782 63.158 11.70 0.00 46.49 3.93
4648 7827 2.743928 GCTGCGTCCAGTTGGAGG 60.744 66.667 14.82 14.82 46.49 4.30
4649 7828 1.739562 GAGCTGCGTCCAGTTGGAG 60.740 63.158 0.00 0.00 46.49 3.86
4704 7883 2.046314 CAGTTGGATCCCCGCGTT 60.046 61.111 9.90 0.00 34.29 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.