Multiple sequence alignment - TraesCS3A01G323900

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G323900 chr3A 100.000 3423 0 0 1 3423 568423166 568426588 0.000000e+00 6322.0
1 TraesCS3A01G323900 chr3A 94.264 1848 60 14 1606 3423 666689424 666691255 0.000000e+00 2784.0
2 TraesCS3A01G323900 chr3A 96.449 1549 46 2 1787 3334 11143722 11145262 0.000000e+00 2547.0
3 TraesCS3A01G323900 chr3A 97.694 477 9 2 1 476 710766130 710765655 0.000000e+00 819.0
4 TraesCS3A01G323900 chr3A 96.646 477 15 1 1 476 666688217 666688693 0.000000e+00 791.0
5 TraesCS3A01G323900 chr3A 86.667 450 28 15 1536 1975 743302909 743303336 1.440000e-128 470.0
6 TraesCS3A01G323900 chr3A 99.390 164 1 0 479 642 113357803 113357966 7.180000e-77 298.0
7 TraesCS3A01G323900 chr3A 98.802 167 1 1 479 644 710789822 710789656 2.580000e-76 296.0
8 TraesCS3A01G323900 chr7A 94.906 2807 96 9 642 3423 714812621 714809837 0.000000e+00 4348.0
9 TraesCS3A01G323900 chr7A 94.288 2801 89 23 642 3423 112683329 112680581 0.000000e+00 4220.0
10 TraesCS3A01G323900 chr7A 94.122 2433 74 17 1017 3423 546437862 546440251 0.000000e+00 3637.0
11 TraesCS3A01G323900 chr7A 95.109 2249 64 9 1193 3423 77053768 77055988 0.000000e+00 3502.0
12 TraesCS3A01G323900 chr7A 94.834 1955 51 10 1493 3423 538320457 538322385 0.000000e+00 3005.0
13 TraesCS3A01G323900 chr7A 96.355 1317 31 3 2122 3423 705523623 705524937 0.000000e+00 2150.0
14 TraesCS3A01G323900 chr7A 92.430 1255 42 16 642 1884 538319718 538320931 0.000000e+00 1742.0
15 TraesCS3A01G323900 chr7A 92.637 1005 46 7 642 1629 56063132 56064125 0.000000e+00 1421.0
16 TraesCS3A01G323900 chr7A 91.357 995 41 10 1608 2560 724218884 724217893 0.000000e+00 1319.0
17 TraesCS3A01G323900 chr7A 97.071 478 12 2 1 476 705512799 705513276 0.000000e+00 804.0
18 TraesCS3A01G323900 chr7A 97.065 477 12 2 1 476 714813088 714812613 0.000000e+00 802.0
19 TraesCS3A01G323900 chr7A 85.608 403 22 12 1392 1783 77054166 77054543 1.150000e-104 390.0
20 TraesCS3A01G323900 chr7A 84.334 383 28 18 1392 1755 546438420 546438789 2.530000e-91 346.0
21 TraesCS3A01G323900 chr1A 94.939 2806 89 11 642 3423 576101680 576104456 0.000000e+00 4346.0
22 TraesCS3A01G323900 chr1A 93.219 1932 74 12 1510 3423 341129176 341131068 0.000000e+00 2789.0
23 TraesCS3A01G323900 chr1A 93.777 916 45 4 1608 2512 1472386 1471472 0.000000e+00 1365.0
24 TraesCS3A01G323900 chr1A 93.559 916 47 4 1608 2512 1432562 1431648 0.000000e+00 1354.0
25 TraesCS3A01G323900 chr1A 97.694 477 9 2 1 476 341127970 341128445 0.000000e+00 819.0
26 TraesCS3A01G323900 chr1A 97.479 476 12 0 1 476 576101213 576101688 0.000000e+00 813.0
27 TraesCS3A01G323900 chr1A 98.182 165 3 0 479 643 356442743 356442907 4.320000e-74 289.0
28 TraesCS3A01G323900 chr1A 97.059 170 5 0 472 641 32549395 32549226 1.550000e-73 287.0
29 TraesCS3A01G323900 chr1A 98.171 164 3 0 479 642 554084117 554084280 1.550000e-73 287.0
30 TraesCS3A01G323900 chr1A 97.546 163 4 0 479 641 580146050 580146212 2.600000e-71 279.0
31 TraesCS3A01G323900 chr1A 95.732 164 5 2 479 642 466078029 466078190 2.620000e-66 263.0
32 TraesCS3A01G323900 chr1A 95.706 163 6 1 479 641 515944243 515944404 9.420000e-66 261.0
33 TraesCS3A01G323900 chr1A 88.344 163 4 4 322 482 1567706 1567557 7.550000e-42 182.0
34 TraesCS3A01G323900 chr1A 95.890 73 3 0 245 317 33038669 33038597 6.000000e-23 119.0
35 TraesCS3A01G323900 chr1A 94.737 76 4 0 242 317 523986723 523986798 6.000000e-23 119.0
36 TraesCS3A01G323900 chr1A 94.667 75 4 0 243 317 315227552 315227478 2.160000e-22 117.0
37 TraesCS3A01G323900 chr5A 94.769 2810 98 13 642 3423 688077963 688080751 0.000000e+00 4329.0
38 TraesCS3A01G323900 chr5A 93.976 2706 82 16 752 3423 1844934 1847592 0.000000e+00 4019.0
39 TraesCS3A01G323900 chr5A 93.715 1973 60 18 1493 3423 601004492 601006442 0.000000e+00 2898.0
40 TraesCS3A01G323900 chr5A 95.501 1756 52 5 1694 3423 671943047 671941293 0.000000e+00 2780.0
41 TraesCS3A01G323900 chr5A 93.019 1146 50 16 642 1770 17637349 17638481 0.000000e+00 1646.0
42 TraesCS3A01G323900 chr5A 91.966 1170 38 22 642 1805 11909383 11908264 0.000000e+00 1589.0
43 TraesCS3A01G323900 chr5A 96.855 477 14 1 1 476 647462508 647462032 0.000000e+00 797.0
44 TraesCS3A01G323900 chr5A 96.436 477 12 3 1 476 1844387 1844859 0.000000e+00 782.0
45 TraesCS3A01G323900 chr5A 95.616 479 18 1 1 476 671944223 671943745 0.000000e+00 765.0
46 TraesCS3A01G323900 chr5A 95.397 478 9 3 1 476 688077505 688077971 0.000000e+00 749.0
47 TraesCS3A01G323900 chr5A 97.273 220 6 0 257 476 692005046 692005265 1.160000e-99 374.0
48 TraesCS3A01G323900 chr5A 98.235 170 3 0 472 641 566793376 566793545 7.180000e-77 298.0
49 TraesCS3A01G323900 chr5A 99.387 163 1 0 479 641 488019103 488019265 2.580000e-76 296.0
50 TraesCS3A01G323900 chr5A 98.788 165 1 1 479 643 305967693 305967856 3.340000e-75 292.0
51 TraesCS3A01G323900 chr5A 98.773 163 2 0 479 641 566033424 566033586 1.200000e-74 291.0
52 TraesCS3A01G323900 chr6A 93.731 2696 80 10 752 3423 83031798 83029168 0.000000e+00 3960.0
53 TraesCS3A01G323900 chr6A 94.118 1768 46 7 1608 3334 82992983 82991233 0.000000e+00 2636.0
54 TraesCS3A01G323900 chr6A 95.620 1644 47 4 1795 3423 85100307 85101940 0.000000e+00 2614.0
55 TraesCS3A01G323900 chr6A 92.876 1151 53 18 642 1783 82993736 82992606 0.000000e+00 1644.0
56 TraesCS3A01G323900 chr6A 94.979 478 11 3 1 476 617030338 617029872 0.000000e+00 737.0
57 TraesCS3A01G323900 chr6A 92.094 468 8 3 1 465 85099133 85099574 1.730000e-177 632.0
58 TraesCS3A01G323900 chr6A 93.750 416 10 5 63 476 82994129 82993728 8.120000e-171 610.0
59 TraesCS3A01G323900 chr6A 97.970 197 2 2 1 196 441509022 441509217 1.180000e-89 340.0
60 TraesCS3A01G323900 chr6A 97.561 164 4 0 479 642 613273266 613273429 7.230000e-72 281.0
61 TraesCS3A01G323900 chr6A 96.450 169 6 0 473 641 610234146 610234314 2.600000e-71 279.0
62 TraesCS3A01G323900 chr6A 96.296 162 6 0 480 641 22915545 22915384 2.030000e-67 267.0
63 TraesCS3A01G323900 chr6A 92.896 183 12 1 460 641 6338380 6338562 7.280000e-67 265.0
64 TraesCS3A01G323900 chr6A 97.297 74 2 0 244 317 318157984 318157911 3.590000e-25 126.0
65 TraesCS3A01G323900 chr2A 90.811 1948 73 26 1493 3423 35544138 35545996 0.000000e+00 2508.0
66 TraesCS3A01G323900 chr2A 90.238 1219 53 24 642 1850 32430322 32429160 0.000000e+00 1531.0
67 TraesCS3A01G323900 chr2A 90.884 1075 40 21 752 1783 35543515 35544574 0.000000e+00 1389.0
68 TraesCS3A01G323900 chr2A 99.405 168 1 0 479 646 379154181 379154348 4.290000e-79 305.0
69 TraesCS3A01G323900 chr2A 98.788 165 1 1 479 643 769534513 769534676 3.340000e-75 292.0
70 TraesCS3A01G323900 chr7B 94.444 1044 37 6 1608 2640 994026 992993 0.000000e+00 1587.0
71 TraesCS3A01G323900 chr7B 91.681 1154 46 29 642 1783 994773 993658 0.000000e+00 1554.0
72 TraesCS3A01G323900 chr2B 90.928 948 51 11 697 1644 573901234 573902146 0.000000e+00 1242.0
73 TraesCS3A01G323900 chr2B 90.084 948 57 11 697 1644 556612074 556612984 0.000000e+00 1195.0
74 TraesCS3A01G323900 chr2B 88.701 947 62 11 699 1644 313621879 313622781 0.000000e+00 1114.0
75 TraesCS3A01G323900 chr2B 93.665 221 14 0 1424 1644 85864220 85864440 7.080000e-87 331.0
76 TraesCS3A01G323900 chr6B 90.612 948 54 9 697 1644 30588814 30589726 0.000000e+00 1225.0
77 TraesCS3A01G323900 chr6B 89.321 1002 57 13 1608 2560 716416106 716415106 0.000000e+00 1212.0
78 TraesCS3A01G323900 chr6B 90.285 947 56 9 699 1644 20414878 20415789 0.000000e+00 1206.0
79 TraesCS3A01G323900 chr3B 89.746 946 62 8 699 1644 27360807 27359897 0.000000e+00 1177.0
80 TraesCS3A01G323900 chr4A 96.574 467 14 2 11 475 616141951 616141485 0.000000e+00 773.0
81 TraesCS3A01G323900 chr4A 100.000 166 0 0 479 644 606368829 606368664 1.190000e-79 307.0
82 TraesCS3A01G323900 chr4A 99.387 163 1 0 479 641 540055091 540055253 2.580000e-76 296.0
83 TraesCS3A01G323900 chr4D 96.465 198 6 1 1 197 418845051 418844854 3.290000e-85 326.0
84 TraesCS3A01G323900 chr4D 95.939 197 7 1 1 196 439721181 439720985 5.510000e-83 318.0
85 TraesCS3A01G323900 chr4D 87.805 164 16 2 479 640 360867159 360866998 4.510000e-44 189.0
86 TraesCS3A01G323900 chr4D 85.897 156 20 2 481 635 384965581 384965735 7.600000e-37 165.0
87 TraesCS3A01G323900 chr3D 96.429 196 6 1 1 196 546352443 546352637 4.260000e-84 322.0
88 TraesCS3A01G323900 chr3D 94.203 207 10 2 1 206 54658511 54658716 7.130000e-82 315.0
89 TraesCS3A01G323900 chr3D 94.375 160 9 0 479 638 584566812 584566971 2.640000e-61 246.0
90 TraesCS3A01G323900 chr3D 87.037 162 21 0 479 640 613774261 613774422 2.100000e-42 183.0
91 TraesCS3A01G323900 chr3D 94.521 73 4 0 245 317 599585307 599585235 2.790000e-21 113.0
92 TraesCS3A01G323900 chrUn 94.686 207 9 2 1 206 179750740 179750945 1.530000e-83 320.0
93 TraesCS3A01G323900 chrUn 95.939 197 7 1 1 196 477952708 477952512 5.510000e-83 318.0
94 TraesCS3A01G323900 chrUn 93.750 208 10 3 1 206 21956547 21956753 3.320000e-80 309.0
95 TraesCS3A01G323900 chrUn 93.720 207 11 2 1 206 21960808 21961013 3.320000e-80 309.0
96 TraesCS3A01G323900 chrUn 93.750 208 8 5 1 206 179751373 179751577 1.190000e-79 307.0
97 TraesCS3A01G323900 chrUn 94.924 197 9 1 1 196 382421340 382421536 1.190000e-79 307.0
98 TraesCS3A01G323900 chrUn 94.416 197 9 2 1 196 197747332 197747137 5.550000e-78 302.0
99 TraesCS3A01G323900 chrUn 87.425 167 5 8 319 482 197746190 197746037 9.760000e-41 178.0
100 TraesCS3A01G323900 chrUn 86.982 169 8 4 322 476 245944549 245944381 9.760000e-41 178.0
101 TraesCS3A01G323900 chrUn 96.154 104 3 1 319 422 389840005 389840107 5.870000e-38 169.0
102 TraesCS3A01G323900 chrUn 96.154 104 3 1 319 422 431202518 431202620 5.870000e-38 169.0
103 TraesCS3A01G323900 chrUn 95.192 104 4 1 319 422 194097937 194098039 2.730000e-36 163.0
104 TraesCS3A01G323900 chrUn 94.231 104 4 2 319 422 344606455 344606556 1.270000e-34 158.0
105 TraesCS3A01G323900 chrUn 94.231 104 4 2 319 422 344625855 344625956 1.270000e-34 158.0
106 TraesCS3A01G323900 chrUn 94.231 104 4 2 319 422 382422434 382422535 1.270000e-34 158.0
107 TraesCS3A01G323900 chrUn 80.435 184 18 10 466 648 95391395 95391229 1.290000e-24 124.0
108 TraesCS3A01G323900 chrUn 95.890 73 3 0 245 317 168702348 168702276 6.000000e-23 119.0
109 TraesCS3A01G323900 chrUn 93.590 78 4 1 241 317 82369417 82369340 7.760000e-22 115.0
110 TraesCS3A01G323900 chrUn 93.590 78 4 1 241 317 388907470 388907393 7.760000e-22 115.0
111 TraesCS3A01G323900 chrUn 94.444 72 4 0 244 315 77636579 77636508 1.000000e-20 111.0
112 TraesCS3A01G323900 chrUn 92.405 79 4 1 239 315 200522224 200522302 1.000000e-20 111.0
113 TraesCS3A01G323900 chrUn 94.366 71 4 0 245 315 37821498 37821428 3.610000e-20 110.0
114 TraesCS3A01G323900 chrUn 93.243 74 5 0 570 643 371003650 371003577 3.610000e-20 110.0
115 TraesCS3A01G323900 chrUn 93.243 74 5 0 570 643 371005555 371005482 3.610000e-20 110.0
116 TraesCS3A01G323900 chrUn 93.151 73 5 0 245 317 234521642 234521714 1.300000e-19 108.0
117 TraesCS3A01G323900 chrUn 97.872 47 1 0 198 244 24559168 24559214 7.870000e-12 82.4
118 TraesCS3A01G323900 chrUn 97.872 47 1 0 198 244 27640552 27640598 7.870000e-12 82.4
119 TraesCS3A01G323900 chrUn 97.872 47 1 0 198 244 179753335 179753381 7.870000e-12 82.4
120 TraesCS3A01G323900 chrUn 100.000 33 0 0 212 244 80110878 80110846 1.030000e-05 62.1
121 TraesCS3A01G323900 chr5D 94.660 206 10 1 1 206 48474037 48474241 5.510000e-83 318.0
122 TraesCS3A01G323900 chr6D 94.203 207 10 2 1 206 2775809 2775604 7.130000e-82 315.0
123 TraesCS3A01G323900 chr6D 94.203 207 10 2 1 206 395495809 395495604 7.130000e-82 315.0
124 TraesCS3A01G323900 chr6D 93.720 207 11 2 1 206 306331388 306331593 3.320000e-80 309.0
125 TraesCS3A01G323900 chr6D 85.057 174 24 1 470 641 138667593 138667766 3.510000e-40 176.0
126 TraesCS3A01G323900 chr6D 83.871 155 23 2 483 635 438164118 438164272 2.750000e-31 147.0
127 TraesCS3A01G323900 chr6D 92.647 68 5 0 566 633 451327967 451327900 7.820000e-17 99.0
128 TraesCS3A01G323900 chr6D 97.727 44 1 0 201 244 10961558 10961515 3.660000e-10 76.8
129 TraesCS3A01G323900 chr6D 95.745 47 2 0 198 244 28102988 28103034 3.660000e-10 76.8
130 TraesCS3A01G323900 chr6D 95.745 47 2 0 198 244 91153209 91153255 3.660000e-10 76.8
131 TraesCS3A01G323900 chr6D 97.727 44 1 0 201 244 395495506 395495463 3.660000e-10 76.8
132 TraesCS3A01G323900 chr1D 94.203 207 10 2 1 206 486234991 486234786 7.130000e-82 315.0
133 TraesCS3A01G323900 chr1D 95.732 164 7 0 479 642 20821396 20821559 7.280000e-67 265.0
134 TraesCS3A01G323900 chr1D 92.398 171 13 0 475 645 408459845 408459675 9.490000e-61 244.0
135 TraesCS3A01G323900 chr1D 94.048 84 5 0 558 641 141271178 141271261 9.970000e-26 128.0
136 TraesCS3A01G323900 chr1D 97.872 47 1 0 198 244 107453626 107453672 7.870000e-12 82.4
137 TraesCS3A01G323900 chr1D 97.872 47 1 0 198 244 303041058 303041104 7.870000e-12 82.4
138 TraesCS3A01G323900 chr1D 97.872 47 1 0 198 244 447344460 447344506 7.870000e-12 82.4
139 TraesCS3A01G323900 chr1D 97.872 47 1 0 198 244 453645329 453645375 7.870000e-12 82.4
140 TraesCS3A01G323900 chr4B 89.286 168 5 3 322 476 263070261 263070094 7.490000e-47 198.0
141 TraesCS3A01G323900 chr4B 89.286 168 5 3 322 476 668355880 668355713 7.490000e-47 198.0
142 TraesCS3A01G323900 chr4B 87.952 166 4 5 319 482 664138792 664138943 7.550000e-42 182.0
143 TraesCS3A01G323900 chr4B 96.154 104 3 1 319 422 664113864 664113966 5.870000e-38 169.0
144 TraesCS3A01G323900 chr4B 93.902 82 3 1 238 317 101484030 101484111 4.640000e-24 122.0
145 TraesCS3A01G323900 chr4B 94.872 78 4 0 240 317 602262707 602262784 4.640000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G323900 chr3A 568423166 568426588 3422 False 6322.000000 6322 100.000000 1 3423 1 chr3A.!!$F3 3422
1 TraesCS3A01G323900 chr3A 11143722 11145262 1540 False 2547.000000 2547 96.449000 1787 3334 1 chr3A.!!$F1 1547
2 TraesCS3A01G323900 chr3A 666688217 666691255 3038 False 1787.500000 2784 95.455000 1 3423 2 chr3A.!!$F5 3422
3 TraesCS3A01G323900 chr7A 112680581 112683329 2748 True 4220.000000 4220 94.288000 642 3423 1 chr7A.!!$R1 2781
4 TraesCS3A01G323900 chr7A 714809837 714813088 3251 True 2575.000000 4348 95.985500 1 3423 2 chr7A.!!$R3 3422
5 TraesCS3A01G323900 chr7A 538319718 538322385 2667 False 2373.500000 3005 93.632000 642 3423 2 chr7A.!!$F5 2781
6 TraesCS3A01G323900 chr7A 705523623 705524937 1314 False 2150.000000 2150 96.355000 2122 3423 1 chr7A.!!$F3 1301
7 TraesCS3A01G323900 chr7A 546437862 546440251 2389 False 1991.500000 3637 89.228000 1017 3423 2 chr7A.!!$F6 2406
8 TraesCS3A01G323900 chr7A 77053768 77055988 2220 False 1946.000000 3502 90.358500 1193 3423 2 chr7A.!!$F4 2230
9 TraesCS3A01G323900 chr7A 56063132 56064125 993 False 1421.000000 1421 92.637000 642 1629 1 chr7A.!!$F1 987
10 TraesCS3A01G323900 chr7A 724217893 724218884 991 True 1319.000000 1319 91.357000 1608 2560 1 chr7A.!!$R2 952
11 TraesCS3A01G323900 chr1A 576101213 576104456 3243 False 2579.500000 4346 96.209000 1 3423 2 chr1A.!!$F8 3422
12 TraesCS3A01G323900 chr1A 341127970 341131068 3098 False 1804.000000 2789 95.456500 1 3423 2 chr1A.!!$F7 3422
13 TraesCS3A01G323900 chr1A 1471472 1472386 914 True 1365.000000 1365 93.777000 1608 2512 1 chr1A.!!$R2 904
14 TraesCS3A01G323900 chr1A 1431648 1432562 914 True 1354.000000 1354 93.559000 1608 2512 1 chr1A.!!$R1 904
15 TraesCS3A01G323900 chr5A 601004492 601006442 1950 False 2898.000000 2898 93.715000 1493 3423 1 chr5A.!!$F6 1930
16 TraesCS3A01G323900 chr5A 688077505 688080751 3246 False 2539.000000 4329 95.083000 1 3423 2 chr5A.!!$F9 3422
17 TraesCS3A01G323900 chr5A 1844387 1847592 3205 False 2400.500000 4019 95.206000 1 3423 2 chr5A.!!$F8 3422
18 TraesCS3A01G323900 chr5A 671941293 671944223 2930 True 1772.500000 2780 95.558500 1 3423 2 chr5A.!!$R3 3422
19 TraesCS3A01G323900 chr5A 17637349 17638481 1132 False 1646.000000 1646 93.019000 642 1770 1 chr5A.!!$F1 1128
20 TraesCS3A01G323900 chr5A 11908264 11909383 1119 True 1589.000000 1589 91.966000 642 1805 1 chr5A.!!$R1 1163
21 TraesCS3A01G323900 chr6A 83029168 83031798 2630 True 3960.000000 3960 93.731000 752 3423 1 chr6A.!!$R2 2671
22 TraesCS3A01G323900 chr6A 82991233 82994129 2896 True 1630.000000 2636 93.581333 63 3334 3 chr6A.!!$R5 3271
23 TraesCS3A01G323900 chr6A 85099133 85101940 2807 False 1623.000000 2614 93.857000 1 3423 2 chr6A.!!$F5 3422
24 TraesCS3A01G323900 chr2A 35543515 35545996 2481 False 1948.500000 2508 90.847500 752 3423 2 chr2A.!!$F3 2671
25 TraesCS3A01G323900 chr2A 32429160 32430322 1162 True 1531.000000 1531 90.238000 642 1850 1 chr2A.!!$R1 1208
26 TraesCS3A01G323900 chr7B 992993 994773 1780 True 1570.500000 1587 93.062500 642 2640 2 chr7B.!!$R1 1998
27 TraesCS3A01G323900 chr2B 573901234 573902146 912 False 1242.000000 1242 90.928000 697 1644 1 chr2B.!!$F4 947
28 TraesCS3A01G323900 chr2B 556612074 556612984 910 False 1195.000000 1195 90.084000 697 1644 1 chr2B.!!$F3 947
29 TraesCS3A01G323900 chr2B 313621879 313622781 902 False 1114.000000 1114 88.701000 699 1644 1 chr2B.!!$F2 945
30 TraesCS3A01G323900 chr6B 30588814 30589726 912 False 1225.000000 1225 90.612000 697 1644 1 chr6B.!!$F2 947
31 TraesCS3A01G323900 chr6B 716415106 716416106 1000 True 1212.000000 1212 89.321000 1608 2560 1 chr6B.!!$R1 952
32 TraesCS3A01G323900 chr6B 20414878 20415789 911 False 1206.000000 1206 90.285000 699 1644 1 chr6B.!!$F1 945
33 TraesCS3A01G323900 chr3B 27359897 27360807 910 True 1177.000000 1177 89.746000 699 1644 1 chr3B.!!$R1 945
34 TraesCS3A01G323900 chrUn 197746037 197747332 1295 True 240.000000 302 90.920500 1 482 2 chrUn.!!$R10 481
35 TraesCS3A01G323900 chrUn 179750740 179753381 2641 False 236.466667 320 95.436000 1 244 3 chrUn.!!$F12 243
36 TraesCS3A01G323900 chrUn 382421340 382422535 1195 False 232.500000 307 94.577500 1 422 2 chrUn.!!$F13 421

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 3568 0.029989 GAGGGGGTAAGAGGGACCAT 60.030 60.0 0.0 0.0 38.86 3.55 F
1020 4036 0.030807 TGGAGGAGGCATCATGGAGA 60.031 55.0 0.0 0.0 0.00 3.71 F
2057 6426 0.313987 GCTGTACACCTTTGTTGGGC 59.686 55.0 0.0 0.0 37.15 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 6484 0.366871 CTGCATGTCGACGTACTTGC 59.633 55.000 17.78 17.78 45.72 4.01 R
2236 6605 4.502645 CGTTTGTGGTCCAATTTCTTGTTC 59.497 41.667 0.00 0.00 31.81 3.18 R
3036 7462 1.619807 GGGGCGCAGGGAGTTTAGTA 61.620 60.000 10.83 0.00 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 6.098982 ACCCAAATTTTCTTGTACATGGTGAA 59.901 34.615 8.74 3.59 0.00 3.18
437 3371 8.677300 GGTTGCAGTGATCATTAATTTTAGAGA 58.323 33.333 0.00 0.00 0.00 3.10
479 3420 7.464830 TTTTTGTTTTGTTTCAGAAACGACA 57.535 28.000 19.08 18.71 44.28 4.35
480 3421 7.464830 TTTTGTTTTGTTTCAGAAACGACAA 57.535 28.000 24.23 24.23 44.28 3.18
481 3422 7.464830 TTTGTTTTGTTTCAGAAACGACAAA 57.535 28.000 28.90 28.90 44.28 2.83
482 3423 7.644986 TTGTTTTGTTTCAGAAACGACAAAT 57.355 28.000 25.04 0.00 44.28 2.32
483 3424 7.644986 TGTTTTGTTTCAGAAACGACAAATT 57.355 28.000 19.08 0.00 44.28 1.82
484 3425 8.077836 TGTTTTGTTTCAGAAACGACAAATTT 57.922 26.923 19.08 0.00 44.28 1.82
485 3426 8.552034 TGTTTTGTTTCAGAAACGACAAATTTT 58.448 25.926 19.08 0.00 44.28 1.82
489 3430 8.744008 TGTTTCAGAAACGACAAATTTTAACA 57.256 26.923 19.08 0.00 44.28 2.41
490 3431 9.360093 TGTTTCAGAAACGACAAATTTTAACAT 57.640 25.926 19.08 0.00 44.28 2.71
491 3432 9.618410 GTTTCAGAAACGACAAATTTTAACATG 57.382 29.630 10.30 0.00 0.00 3.21
492 3433 7.922505 TCAGAAACGACAAATTTTAACATGG 57.077 32.000 0.00 0.00 0.00 3.66
493 3434 7.484975 TCAGAAACGACAAATTTTAACATGGT 58.515 30.769 0.00 0.00 0.00 3.55
494 3435 7.646130 TCAGAAACGACAAATTTTAACATGGTC 59.354 33.333 0.00 0.00 0.00 4.02
495 3436 6.921307 AGAAACGACAAATTTTAACATGGTCC 59.079 34.615 0.00 0.00 0.00 4.46
496 3437 5.128992 ACGACAAATTTTAACATGGTCCC 57.871 39.130 0.00 0.00 0.00 4.46
497 3438 4.830600 ACGACAAATTTTAACATGGTCCCT 59.169 37.500 0.00 0.00 0.00 4.20
498 3439 5.048294 ACGACAAATTTTAACATGGTCCCTC 60.048 40.000 0.00 0.00 0.00 4.30
499 3440 5.183140 CGACAAATTTTAACATGGTCCCTCT 59.817 40.000 0.00 0.00 0.00 3.69
500 3441 6.294508 CGACAAATTTTAACATGGTCCCTCTT 60.295 38.462 0.00 0.00 0.00 2.85
501 3442 7.094549 CGACAAATTTTAACATGGTCCCTCTTA 60.095 37.037 0.00 0.00 0.00 2.10
502 3443 7.892609 ACAAATTTTAACATGGTCCCTCTTAC 58.107 34.615 0.00 0.00 0.00 2.34
503 3444 7.039293 ACAAATTTTAACATGGTCCCTCTTACC 60.039 37.037 0.00 0.00 37.53 2.85
504 3445 5.853572 TTTTAACATGGTCCCTCTTACCT 57.146 39.130 0.00 0.00 37.91 3.08
505 3446 5.853572 TTTAACATGGTCCCTCTTACCTT 57.146 39.130 0.00 0.00 37.91 3.50
506 3447 5.431179 TTAACATGGTCCCTCTTACCTTC 57.569 43.478 0.00 0.00 37.91 3.46
507 3448 3.207044 ACATGGTCCCTCTTACCTTCT 57.793 47.619 0.00 0.00 37.91 2.85
508 3449 3.532102 ACATGGTCCCTCTTACCTTCTT 58.468 45.455 0.00 0.00 37.91 2.52
509 3450 3.916989 ACATGGTCCCTCTTACCTTCTTT 59.083 43.478 0.00 0.00 37.91 2.52
510 3451 4.354087 ACATGGTCCCTCTTACCTTCTTTT 59.646 41.667 0.00 0.00 37.91 2.27
511 3452 5.162980 ACATGGTCCCTCTTACCTTCTTTTT 60.163 40.000 0.00 0.00 37.91 1.94
535 3476 8.842358 TTTTACATGTGAGGTAAGAAGGTAAG 57.158 34.615 9.11 0.00 32.76 2.34
536 3477 7.786046 TTACATGTGAGGTAAGAAGGTAAGA 57.214 36.000 9.11 0.00 0.00 2.10
537 3478 6.287589 ACATGTGAGGTAAGAAGGTAAGAG 57.712 41.667 0.00 0.00 0.00 2.85
538 3479 5.780793 ACATGTGAGGTAAGAAGGTAAGAGT 59.219 40.000 0.00 0.00 0.00 3.24
539 3480 5.979288 TGTGAGGTAAGAAGGTAAGAGTC 57.021 43.478 0.00 0.00 0.00 3.36
540 3481 5.391256 TGTGAGGTAAGAAGGTAAGAGTCA 58.609 41.667 0.00 0.00 0.00 3.41
541 3482 5.836898 TGTGAGGTAAGAAGGTAAGAGTCAA 59.163 40.000 0.00 0.00 0.00 3.18
542 3483 6.497259 TGTGAGGTAAGAAGGTAAGAGTCAAT 59.503 38.462 0.00 0.00 0.00 2.57
543 3484 7.036829 GTGAGGTAAGAAGGTAAGAGTCAATC 58.963 42.308 0.00 0.00 0.00 2.67
544 3485 6.724441 TGAGGTAAGAAGGTAAGAGTCAATCA 59.276 38.462 0.00 0.00 0.00 2.57
545 3486 7.234782 TGAGGTAAGAAGGTAAGAGTCAATCAA 59.765 37.037 0.00 0.00 0.00 2.57
546 3487 7.616313 AGGTAAGAAGGTAAGAGTCAATCAAG 58.384 38.462 0.00 0.00 0.00 3.02
547 3488 6.314152 GGTAAGAAGGTAAGAGTCAATCAAGC 59.686 42.308 0.00 0.00 0.00 4.01
548 3489 4.837972 AGAAGGTAAGAGTCAATCAAGCC 58.162 43.478 0.00 0.00 0.00 4.35
549 3490 4.287067 AGAAGGTAAGAGTCAATCAAGCCA 59.713 41.667 0.00 0.00 0.00 4.75
550 3491 4.851639 AGGTAAGAGTCAATCAAGCCAT 57.148 40.909 0.00 0.00 0.00 4.40
551 3492 5.184892 AGGTAAGAGTCAATCAAGCCATT 57.815 39.130 0.00 0.00 0.00 3.16
552 3493 5.189180 AGGTAAGAGTCAATCAAGCCATTC 58.811 41.667 0.00 0.00 0.00 2.67
553 3494 4.943705 GGTAAGAGTCAATCAAGCCATTCA 59.056 41.667 0.00 0.00 0.00 2.57
554 3495 5.591877 GGTAAGAGTCAATCAAGCCATTCAT 59.408 40.000 0.00 0.00 0.00 2.57
555 3496 6.096001 GGTAAGAGTCAATCAAGCCATTCATT 59.904 38.462 0.00 0.00 0.00 2.57
556 3497 5.578005 AGAGTCAATCAAGCCATTCATTG 57.422 39.130 0.00 0.00 0.00 2.82
557 3498 5.258841 AGAGTCAATCAAGCCATTCATTGA 58.741 37.500 0.00 0.00 39.59 2.57
558 3499 5.892119 AGAGTCAATCAAGCCATTCATTGAT 59.108 36.000 0.00 0.00 45.67 2.57
559 3500 5.902681 AGTCAATCAAGCCATTCATTGATG 58.097 37.500 1.50 0.00 43.56 3.07
560 3501 5.655090 AGTCAATCAAGCCATTCATTGATGA 59.345 36.000 1.50 0.00 43.56 2.92
561 3502 5.977725 GTCAATCAAGCCATTCATTGATGAG 59.022 40.000 1.50 0.00 43.56 2.90
562 3503 5.889289 TCAATCAAGCCATTCATTGATGAGA 59.111 36.000 1.50 1.50 43.56 3.27
563 3504 6.549736 TCAATCAAGCCATTCATTGATGAGAT 59.450 34.615 1.50 0.00 43.56 2.75
564 3505 6.576662 ATCAAGCCATTCATTGATGAGATC 57.423 37.500 0.00 0.00 42.92 2.75
565 3506 5.442391 TCAAGCCATTCATTGATGAGATCA 58.558 37.500 0.00 0.00 38.19 2.92
575 3516 4.736126 TTGATGAGATCAACGGCTAAGA 57.264 40.909 0.00 0.00 43.84 2.10
576 3517 4.944619 TGATGAGATCAACGGCTAAGAT 57.055 40.909 0.00 0.00 36.11 2.40
577 3518 4.876125 TGATGAGATCAACGGCTAAGATC 58.124 43.478 0.00 0.00 38.70 2.75
579 3520 5.770162 TGATGAGATCAACGGCTAAGATCTA 59.230 40.000 10.91 3.55 46.15 1.98
580 3521 6.435591 TGATGAGATCAACGGCTAAGATCTAT 59.564 38.462 10.91 6.87 46.15 1.98
581 3522 6.656632 TGAGATCAACGGCTAAGATCTATT 57.343 37.500 10.91 0.00 46.15 1.73
582 3523 7.055667 TGAGATCAACGGCTAAGATCTATTT 57.944 36.000 10.91 0.00 46.15 1.40
583 3524 7.500992 TGAGATCAACGGCTAAGATCTATTTT 58.499 34.615 10.91 0.00 46.15 1.82
584 3525 8.638873 TGAGATCAACGGCTAAGATCTATTTTA 58.361 33.333 10.91 0.00 46.15 1.52
585 3526 9.646427 GAGATCAACGGCTAAGATCTATTTTAT 57.354 33.333 10.91 0.00 46.15 1.40
589 3530 9.909644 TCAACGGCTAAGATCTATTTTATACTC 57.090 33.333 0.00 0.00 0.00 2.59
590 3531 9.915629 CAACGGCTAAGATCTATTTTATACTCT 57.084 33.333 0.00 0.00 0.00 3.24
609 3550 6.672266 ACTCTTACCTCTCATGTGAAAAGA 57.328 37.500 12.55 12.55 0.00 2.52
610 3551 6.696411 ACTCTTACCTCTCATGTGAAAAGAG 58.304 40.000 24.85 24.85 42.67 2.85
614 3555 2.996631 CTCTCATGTGAAAAGAGGGGG 58.003 52.381 0.00 0.00 34.24 5.40
615 3556 2.307098 CTCTCATGTGAAAAGAGGGGGT 59.693 50.000 0.00 0.00 34.24 4.95
616 3557 3.519510 CTCTCATGTGAAAAGAGGGGGTA 59.480 47.826 0.00 0.00 34.24 3.69
617 3558 3.913799 TCTCATGTGAAAAGAGGGGGTAA 59.086 43.478 0.00 0.00 0.00 2.85
618 3559 4.019321 TCTCATGTGAAAAGAGGGGGTAAG 60.019 45.833 0.00 0.00 0.00 2.34
619 3560 3.913799 TCATGTGAAAAGAGGGGGTAAGA 59.086 43.478 0.00 0.00 0.00 2.10
620 3561 4.019321 TCATGTGAAAAGAGGGGGTAAGAG 60.019 45.833 0.00 0.00 0.00 2.85
621 3562 2.642807 TGTGAAAAGAGGGGGTAAGAGG 59.357 50.000 0.00 0.00 0.00 3.69
622 3563 2.026169 GTGAAAAGAGGGGGTAAGAGGG 60.026 54.545 0.00 0.00 0.00 4.30
623 3564 2.157911 TGAAAAGAGGGGGTAAGAGGGA 60.158 50.000 0.00 0.00 0.00 4.20
624 3565 1.968278 AAAGAGGGGGTAAGAGGGAC 58.032 55.000 0.00 0.00 0.00 4.46
625 3566 0.044397 AAGAGGGGGTAAGAGGGACC 59.956 60.000 0.00 0.00 36.12 4.46
626 3567 1.160289 AGAGGGGGTAAGAGGGACCA 61.160 60.000 0.00 0.00 38.86 4.02
627 3568 0.029989 GAGGGGGTAAGAGGGACCAT 60.030 60.000 0.00 0.00 38.86 3.55
628 3569 0.327576 AGGGGGTAAGAGGGACCATG 60.328 60.000 0.00 0.00 38.86 3.66
629 3570 0.623617 GGGGGTAAGAGGGACCATGT 60.624 60.000 0.00 0.00 38.86 3.21
630 3571 1.296002 GGGGTAAGAGGGACCATGTT 58.704 55.000 0.00 0.00 38.86 2.71
631 3572 2.484602 GGGGTAAGAGGGACCATGTTA 58.515 52.381 0.00 0.00 38.86 2.41
632 3573 2.848071 GGGGTAAGAGGGACCATGTTAA 59.152 50.000 0.00 0.00 38.86 2.01
633 3574 3.267551 GGGGTAAGAGGGACCATGTTAAA 59.732 47.826 0.00 0.00 38.86 1.52
634 3575 4.264038 GGGGTAAGAGGGACCATGTTAAAA 60.264 45.833 0.00 0.00 38.86 1.52
635 3576 4.703575 GGGTAAGAGGGACCATGTTAAAAC 59.296 45.833 0.00 0.00 38.86 2.43
636 3577 5.516062 GGGTAAGAGGGACCATGTTAAAACT 60.516 44.000 0.00 0.00 38.86 2.66
637 3578 5.414765 GGTAAGAGGGACCATGTTAAAACTG 59.585 44.000 0.00 0.00 36.91 3.16
638 3579 3.421844 AGAGGGACCATGTTAAAACTGC 58.578 45.455 0.00 0.00 0.00 4.40
639 3580 3.074538 AGAGGGACCATGTTAAAACTGCT 59.925 43.478 0.00 0.00 0.00 4.24
640 3581 3.421844 AGGGACCATGTTAAAACTGCTC 58.578 45.455 0.00 0.00 0.00 4.26
683 3624 2.365635 CCCACGTCTCCCCTCCAT 60.366 66.667 0.00 0.00 0.00 3.41
981 3997 1.205893 GAGGAATCGTGGAGCAACTCT 59.794 52.381 0.00 0.00 0.00 3.24
1020 4036 0.030807 TGGAGGAGGCATCATGGAGA 60.031 55.000 0.00 0.00 0.00 3.71
1385 4405 6.758254 CCAAATGGTAAAAACATCCAGTTCT 58.242 36.000 0.00 0.00 40.26 3.01
1386 4406 6.646240 CCAAATGGTAAAAACATCCAGTTCTG 59.354 38.462 0.00 0.00 40.26 3.02
1387 4407 7.432869 CAAATGGTAAAAACATCCAGTTCTGA 58.567 34.615 1.00 0.00 40.26 3.27
1388 4408 7.595819 AATGGTAAAAACATCCAGTTCTGAA 57.404 32.000 1.00 0.00 40.26 3.02
1389 4409 6.633500 TGGTAAAAACATCCAGTTCTGAAG 57.367 37.500 1.00 0.00 40.26 3.02
1390 4410 6.126409 TGGTAAAAACATCCAGTTCTGAAGT 58.874 36.000 1.00 0.00 40.26 3.01
1391 4411 6.605594 TGGTAAAAACATCCAGTTCTGAAGTT 59.394 34.615 1.00 1.09 40.26 2.66
1392 4412 7.123547 TGGTAAAAACATCCAGTTCTGAAGTTT 59.876 33.333 1.00 6.45 40.26 2.66
1393 4413 7.648112 GGTAAAAACATCCAGTTCTGAAGTTTC 59.352 37.037 1.00 0.00 40.26 2.78
1394 4414 7.410120 AAAAACATCCAGTTCTGAAGTTTCT 57.590 32.000 1.00 0.00 40.26 2.52
1395 4415 6.382869 AAACATCCAGTTCTGAAGTTTCTG 57.617 37.500 1.00 0.00 40.26 3.02
1396 4416 5.296151 ACATCCAGTTCTGAAGTTTCTGA 57.704 39.130 7.17 0.00 34.02 3.27
1397 4417 5.684704 ACATCCAGTTCTGAAGTTTCTGAA 58.315 37.500 9.30 9.30 41.05 3.02
1398 4418 5.762218 ACATCCAGTTCTGAAGTTTCTGAAG 59.238 40.000 12.58 4.81 42.96 3.02
1399 4419 5.359194 TCCAGTTCTGAAGTTTCTGAAGT 57.641 39.130 12.58 12.83 44.46 3.01
1400 4420 5.745227 TCCAGTTCTGAAGTTTCTGAAGTT 58.255 37.500 15.10 6.10 42.45 2.66
1401 4421 5.817816 TCCAGTTCTGAAGTTTCTGAAGTTC 59.182 40.000 15.10 0.00 42.45 3.01
1402 4422 5.819901 CCAGTTCTGAAGTTTCTGAAGTTCT 59.180 40.000 15.10 7.67 42.45 3.01
1403 4423 6.238320 CCAGTTCTGAAGTTTCTGAAGTTCTG 60.238 42.308 15.10 15.44 42.45 3.02
1404 4424 6.536582 CAGTTCTGAAGTTTCTGAAGTTCTGA 59.463 38.462 15.10 8.27 44.50 3.27
1406 4426 7.545362 TTCTGAAGTTTCTGAAGTTCTGAAG 57.455 36.000 20.29 11.21 46.62 3.02
1407 4427 6.644347 TCTGAAGTTTCTGAAGTTCTGAAGT 58.356 36.000 20.29 12.20 43.85 3.01
1408 4428 7.106239 TCTGAAGTTTCTGAAGTTCTGAAGTT 58.894 34.615 20.29 17.87 43.85 2.66
1409 4429 7.607991 TCTGAAGTTTCTGAAGTTCTGAAGTTT 59.392 33.333 20.29 18.10 43.85 2.66
1410 4430 7.752695 TGAAGTTTCTGAAGTTCTGAAGTTTC 58.247 34.615 24.77 24.77 42.91 2.78
1411 4431 7.607991 TGAAGTTTCTGAAGTTCTGAAGTTTCT 59.392 33.333 27.60 20.33 42.91 2.52
1412 4432 7.313951 AGTTTCTGAAGTTCTGAAGTTTCTG 57.686 36.000 20.29 11.67 36.07 3.02
1413 4433 6.881602 AGTTTCTGAAGTTCTGAAGTTTCTGT 59.118 34.615 20.29 4.37 36.07 3.41
1414 4434 6.910536 TTCTGAAGTTCTGAAGTTTCTGTC 57.089 37.500 18.19 0.20 31.94 3.51
1415 4435 6.227298 TCTGAAGTTCTGAAGTTTCTGTCT 57.773 37.500 11.50 0.00 0.00 3.41
1416 4436 7.348080 TCTGAAGTTCTGAAGTTTCTGTCTA 57.652 36.000 11.50 0.00 0.00 2.59
1417 4437 7.782049 TCTGAAGTTCTGAAGTTTCTGTCTAA 58.218 34.615 11.50 0.00 0.00 2.10
1418 4438 8.424918 TCTGAAGTTCTGAAGTTTCTGTCTAAT 58.575 33.333 11.50 0.00 0.00 1.73
1419 4439 8.964476 TGAAGTTCTGAAGTTTCTGTCTAATT 57.036 30.769 11.50 0.00 0.00 1.40
1449 4469 8.994170 AGTTTCTAAAGTTTCTGAAGTAGATGC 58.006 33.333 0.00 0.00 34.80 3.91
1450 4470 8.774586 GTTTCTAAAGTTTCTGAAGTAGATGCA 58.225 33.333 0.00 0.00 34.80 3.96
1451 4471 8.902540 TTCTAAAGTTTCTGAAGTAGATGCAA 57.097 30.769 0.00 0.00 34.80 4.08
1452 4472 9.507329 TTCTAAAGTTTCTGAAGTAGATGCAAT 57.493 29.630 0.00 0.00 34.80 3.56
1455 4475 8.854614 AAAGTTTCTGAAGTAGATGCAATAGT 57.145 30.769 0.00 0.00 34.80 2.12
1456 4476 8.854614 AAGTTTCTGAAGTAGATGCAATAGTT 57.145 30.769 0.00 0.00 34.80 2.24
1457 4477 8.485976 AGTTTCTGAAGTAGATGCAATAGTTC 57.514 34.615 17.10 17.10 34.80 3.01
1458 4478 8.317679 AGTTTCTGAAGTAGATGCAATAGTTCT 58.682 33.333 21.36 10.49 34.85 3.01
1459 4479 8.386606 GTTTCTGAAGTAGATGCAATAGTTCTG 58.613 37.037 21.36 20.56 34.85 3.02
1460 4480 7.410120 TCTGAAGTAGATGCAATAGTTCTGA 57.590 36.000 22.17 22.17 37.79 3.27
1461 4481 7.840931 TCTGAAGTAGATGCAATAGTTCTGAA 58.159 34.615 22.97 14.10 37.48 3.02
1462 4482 7.978414 TCTGAAGTAGATGCAATAGTTCTGAAG 59.022 37.037 22.97 15.81 37.48 3.02
1463 4483 7.615403 TGAAGTAGATGCAATAGTTCTGAAGT 58.385 34.615 21.36 2.89 34.85 3.01
1464 4484 8.097038 TGAAGTAGATGCAATAGTTCTGAAGTT 58.903 33.333 21.36 4.84 34.85 2.66
1465 4485 8.485976 AAGTAGATGCAATAGTTCTGAAGTTC 57.514 34.615 2.62 0.00 0.00 3.01
1466 4486 7.846066 AGTAGATGCAATAGTTCTGAAGTTCT 58.154 34.615 2.62 2.10 0.00 3.01
1467 4487 6.981762 AGATGCAATAGTTCTGAAGTTCTG 57.018 37.500 2.62 3.79 0.00 3.02
1468 4488 6.705302 AGATGCAATAGTTCTGAAGTTCTGA 58.295 36.000 8.27 8.27 0.00 3.27
1469 4489 7.164122 AGATGCAATAGTTCTGAAGTTCTGAA 58.836 34.615 18.19 18.19 32.96 3.02
1470 4490 6.791887 TGCAATAGTTCTGAAGTTCTGAAG 57.208 37.500 21.45 12.66 35.48 3.02
1471 4491 6.291377 TGCAATAGTTCTGAAGTTCTGAAGT 58.709 36.000 26.44 26.44 39.94 3.01
1472 4492 7.441836 TGCAATAGTTCTGAAGTTCTGAAGTA 58.558 34.615 28.14 28.14 41.33 2.24
1473 4493 7.600375 TGCAATAGTTCTGAAGTTCTGAAGTAG 59.400 37.037 28.86 22.01 40.82 2.57
1474 4494 7.815068 GCAATAGTTCTGAAGTTCTGAAGTAGA 59.185 37.037 28.86 18.45 40.82 2.59
1475 4495 9.868277 CAATAGTTCTGAAGTTCTGAAGTAGAT 57.132 33.333 28.86 22.05 40.82 1.98
1476 4496 9.868277 AATAGTTCTGAAGTTCTGAAGTAGATG 57.132 33.333 28.86 3.51 40.82 2.90
1477 4497 6.162777 AGTTCTGAAGTTCTGAAGTAGATGC 58.837 40.000 23.77 12.45 36.59 3.91
1478 4498 5.728637 TCTGAAGTTCTGAAGTAGATGCA 57.271 39.130 9.78 0.00 34.80 3.96
1479 4499 6.101650 TCTGAAGTTCTGAAGTAGATGCAA 57.898 37.500 9.78 0.00 34.80 4.08
1480 4500 6.705302 TCTGAAGTTCTGAAGTAGATGCAAT 58.295 36.000 9.78 0.00 34.80 3.56
1481 4501 7.840931 TCTGAAGTTCTGAAGTAGATGCAATA 58.159 34.615 9.78 0.00 34.80 1.90
1482 4502 7.761704 TCTGAAGTTCTGAAGTAGATGCAATAC 59.238 37.037 9.78 0.00 34.80 1.89
1483 4503 7.615403 TGAAGTTCTGAAGTAGATGCAATACT 58.385 34.615 8.71 8.71 34.80 2.12
1484 4504 8.749354 TGAAGTTCTGAAGTAGATGCAATACTA 58.251 33.333 13.58 5.26 34.80 1.82
1485 4505 9.243637 GAAGTTCTGAAGTAGATGCAATACTAG 57.756 37.037 13.58 9.53 34.80 2.57
1486 4506 8.299990 AGTTCTGAAGTAGATGCAATACTAGT 57.700 34.615 13.58 0.00 34.80 2.57
1487 4507 8.754080 AGTTCTGAAGTAGATGCAATACTAGTT 58.246 33.333 13.58 14.07 34.80 2.24
1488 4508 9.026074 GTTCTGAAGTAGATGCAATACTAGTTC 57.974 37.037 23.96 23.96 43.52 3.01
1489 4509 8.526667 TCTGAAGTAGATGCAATACTAGTTCT 57.473 34.615 27.07 14.06 43.57 3.01
1490 4510 8.409371 TCTGAAGTAGATGCAATACTAGTTCTG 58.591 37.037 27.07 26.23 43.57 3.02
1491 4511 8.293699 TGAAGTAGATGCAATACTAGTTCTGA 57.706 34.615 27.07 16.49 43.57 3.27
1503 4523 9.482627 CAATACTAGTTCTGAAGTTCTGAAGTT 57.517 33.333 27.66 19.34 38.43 2.66
1505 4525 9.699703 ATACTAGTTCTGAAGTTCTGAAGTTTC 57.300 33.333 27.66 16.06 38.43 2.78
1506 4526 7.787028 ACTAGTTCTGAAGTTCTGAAGTTTCT 58.213 34.615 27.66 20.48 38.43 2.52
1507 4527 6.917217 AGTTCTGAAGTTCTGAAGTTTCTG 57.083 37.500 21.45 11.67 35.38 3.02
1508 4528 6.644347 AGTTCTGAAGTTCTGAAGTTTCTGA 58.356 36.000 21.45 13.37 35.38 3.27
1509 4529 7.106239 AGTTCTGAAGTTCTGAAGTTTCTGAA 58.894 34.615 21.45 20.51 41.05 3.02
1510 4530 7.279758 AGTTCTGAAGTTCTGAAGTTTCTGAAG 59.720 37.037 21.45 13.17 42.96 3.02
1511 4531 6.644347 TCTGAAGTTCTGAAGTTTCTGAAGT 58.356 36.000 11.50 12.83 45.07 3.01
1515 4535 6.917217 AGTTCTGAAGTTTCTGAAGTTCTG 57.083 37.500 12.58 3.79 42.45 3.02
1516 4536 6.644347 AGTTCTGAAGTTTCTGAAGTTCTGA 58.356 36.000 12.58 8.27 44.50 3.27
1517 4537 7.607991 AAGTTCTGAAGTTTCTGAAGTTCTGAA 59.392 33.333 18.19 18.19 46.58 3.02
1518 4538 7.545362 TTCTGAAGTTTCTGAAGTTCTGAAG 57.455 36.000 20.29 11.21 46.62 3.02
1519 4539 6.644347 TCTGAAGTTTCTGAAGTTCTGAAGT 58.356 36.000 20.29 12.20 43.85 3.01
1520 4540 7.106239 TCTGAAGTTTCTGAAGTTCTGAAGTT 58.894 34.615 20.29 17.87 43.85 2.66
1521 4541 7.607991 TCTGAAGTTTCTGAAGTTCTGAAGTTT 59.392 33.333 20.29 18.10 43.85 2.66
1522 4542 7.752695 TGAAGTTTCTGAAGTTCTGAAGTTTC 58.247 34.615 24.77 24.77 42.91 2.78
1523 4543 7.607991 TGAAGTTTCTGAAGTTCTGAAGTTTCT 59.392 33.333 27.60 20.33 42.91 2.52
1524 4544 7.313951 AGTTTCTGAAGTTCTGAAGTTTCTG 57.686 36.000 20.29 11.67 36.07 3.02
1525 4545 6.881602 AGTTTCTGAAGTTCTGAAGTTTCTGT 59.118 34.615 20.29 4.37 36.07 3.41
1526 4546 6.910536 TTCTGAAGTTCTGAAGTTTCTGTC 57.089 37.500 18.19 0.20 31.94 3.51
1527 4547 6.227298 TCTGAAGTTCTGAAGTTTCTGTCT 57.773 37.500 11.50 0.00 0.00 3.41
1528 4548 7.348080 TCTGAAGTTCTGAAGTTTCTGTCTA 57.652 36.000 11.50 0.00 0.00 2.59
1529 4549 7.782049 TCTGAAGTTCTGAAGTTTCTGTCTAA 58.218 34.615 11.50 0.00 0.00 2.10
1530 4550 8.424918 TCTGAAGTTCTGAAGTTTCTGTCTAAT 58.575 33.333 11.50 0.00 0.00 1.73
1531 4551 8.964476 TGAAGTTCTGAAGTTTCTGTCTAATT 57.036 30.769 11.50 0.00 0.00 1.40
1561 4581 8.960591 AGTTTCTGAAATTTCTGAACTTTCTGA 58.039 29.630 29.41 24.98 42.35 3.27
1562 4582 9.573133 GTTTCTGAAATTTCTGAACTTTCTGAA 57.427 29.630 29.70 29.70 42.35 3.02
1563 4583 9.793252 TTTCTGAAATTTCTGAACTTTCTGAAG 57.207 29.630 30.45 21.50 42.46 3.02
1565 4585 9.613428 TCTGAAATTTCTGAACTTTCTGAAGTA 57.387 29.630 25.80 13.26 45.18 2.24
1566 4586 9.875675 CTGAAATTTCTGAACTTTCTGAAGTAG 57.124 33.333 24.40 13.97 45.18 2.57
1567 4587 9.613428 TGAAATTTCTGAACTTTCTGAAGTAGA 57.387 29.630 24.40 7.67 45.18 2.59
1570 4590 7.426929 TTTCTGAACTTTCTGAAGTAGATGC 57.573 36.000 10.16 0.00 45.18 3.91
1571 4591 6.101650 TCTGAACTTTCTGAAGTAGATGCA 57.898 37.500 0.00 0.00 45.18 3.96
1572 4592 6.524734 TCTGAACTTTCTGAAGTAGATGCAA 58.475 36.000 0.00 0.00 45.18 4.08
1573 4593 7.164122 TCTGAACTTTCTGAAGTAGATGCAAT 58.836 34.615 0.00 0.00 45.18 3.56
1574 4594 8.314021 TCTGAACTTTCTGAAGTAGATGCAATA 58.686 33.333 0.00 0.00 45.18 1.90
1575 4595 8.484641 TGAACTTTCTGAAGTAGATGCAATAG 57.515 34.615 0.00 0.00 45.18 1.73
1576 4596 8.097038 TGAACTTTCTGAAGTAGATGCAATAGT 58.903 33.333 0.00 0.00 45.18 2.12
1577 4597 8.854614 AACTTTCTGAAGTAGATGCAATAGTT 57.145 30.769 0.00 0.00 45.18 2.24
1578 4598 8.485976 ACTTTCTGAAGTAGATGCAATAGTTC 57.514 34.615 17.10 17.10 44.13 3.01
1579 4599 8.317679 ACTTTCTGAAGTAGATGCAATAGTTCT 58.682 33.333 21.36 10.49 44.13 3.01
1580 4600 8.484641 TTTCTGAAGTAGATGCAATAGTTCTG 57.515 34.615 21.36 20.56 34.85 3.02
1581 4601 7.410120 TCTGAAGTAGATGCAATAGTTCTGA 57.590 36.000 22.17 22.17 37.79 3.27
1582 4602 7.840931 TCTGAAGTAGATGCAATAGTTCTGAA 58.159 34.615 22.97 14.10 37.48 3.02
1583 4603 7.978414 TCTGAAGTAGATGCAATAGTTCTGAAG 59.022 37.037 22.97 15.81 37.48 3.02
1584 4604 7.615403 TGAAGTAGATGCAATAGTTCTGAAGT 58.385 34.615 21.36 2.89 34.85 3.01
1585 4605 8.097038 TGAAGTAGATGCAATAGTTCTGAAGTT 58.903 33.333 21.36 4.84 34.85 2.66
1586 4606 8.485976 AAGTAGATGCAATAGTTCTGAAGTTC 57.514 34.615 2.62 0.00 0.00 3.01
1587 4607 7.846066 AGTAGATGCAATAGTTCTGAAGTTCT 58.154 34.615 2.62 2.10 0.00 3.01
1588 4608 6.981762 AGATGCAATAGTTCTGAAGTTCTG 57.018 37.500 2.62 3.79 0.00 3.02
1589 4609 6.705302 AGATGCAATAGTTCTGAAGTTCTGA 58.295 36.000 8.27 8.27 0.00 3.27
1590 4610 7.164122 AGATGCAATAGTTCTGAAGTTCTGAA 58.836 34.615 18.19 18.19 32.96 3.02
1591 4611 6.791887 TGCAATAGTTCTGAAGTTCTGAAG 57.208 37.500 21.45 12.66 35.48 3.02
1592 4612 6.291377 TGCAATAGTTCTGAAGTTCTGAAGT 58.709 36.000 26.44 26.44 39.94 3.01
1593 4613 7.441836 TGCAATAGTTCTGAAGTTCTGAAGTA 58.558 34.615 28.14 28.14 41.33 2.24
1594 4614 7.600375 TGCAATAGTTCTGAAGTTCTGAAGTAG 59.400 37.037 28.86 22.01 40.82 2.57
1595 4615 7.815068 GCAATAGTTCTGAAGTTCTGAAGTAGA 59.185 37.037 28.86 18.45 40.82 2.59
1596 4616 9.868277 CAATAGTTCTGAAGTTCTGAAGTAGAT 57.132 33.333 28.86 22.05 40.82 1.98
1597 4617 9.868277 AATAGTTCTGAAGTTCTGAAGTAGATG 57.132 33.333 28.86 3.51 40.82 2.90
1598 4618 6.162777 AGTTCTGAAGTTCTGAAGTAGATGC 58.837 40.000 23.77 12.45 36.59 3.91
1599 4619 5.728637 TCTGAAGTTCTGAAGTAGATGCA 57.271 39.130 9.78 0.00 34.80 3.96
1600 4620 6.101650 TCTGAAGTTCTGAAGTAGATGCAA 57.898 37.500 9.78 0.00 34.80 4.08
1601 4621 6.705302 TCTGAAGTTCTGAAGTAGATGCAAT 58.295 36.000 9.78 0.00 34.80 3.56
1602 4622 7.840931 TCTGAAGTTCTGAAGTAGATGCAATA 58.159 34.615 9.78 0.00 34.80 1.90
1603 4623 7.761704 TCTGAAGTTCTGAAGTAGATGCAATAC 59.238 37.037 9.78 0.00 34.80 1.89
1604 4624 7.615403 TGAAGTTCTGAAGTAGATGCAATACT 58.385 34.615 8.71 8.71 34.80 2.12
1605 4625 8.749354 TGAAGTTCTGAAGTAGATGCAATACTA 58.251 33.333 13.58 5.26 34.80 1.82
1606 4626 9.243637 GAAGTTCTGAAGTAGATGCAATACTAG 57.756 37.037 13.58 9.53 34.80 2.57
1732 4778 8.983307 AGTTTCTGTCTAATTAGTAGTTTCCG 57.017 34.615 12.19 0.00 0.00 4.30
1733 4779 8.800332 AGTTTCTGTCTAATTAGTAGTTTCCGA 58.200 33.333 12.19 0.00 0.00 4.55
1734 4780 9.415544 GTTTCTGTCTAATTAGTAGTTTCCGAA 57.584 33.333 12.19 3.49 0.00 4.30
1735 4781 9.635520 TTTCTGTCTAATTAGTAGTTTCCGAAG 57.364 33.333 12.19 0.00 0.00 3.79
1736 4782 8.345724 TCTGTCTAATTAGTAGTTTCCGAAGT 57.654 34.615 12.19 0.00 0.00 3.01
1739 4785 9.415544 TGTCTAATTAGTAGTTTCCGAAGTTTC 57.584 33.333 12.19 0.00 0.00 2.78
1740 4786 9.636879 GTCTAATTAGTAGTTTCCGAAGTTTCT 57.363 33.333 12.19 0.00 0.00 2.52
1741 4787 9.635520 TCTAATTAGTAGTTTCCGAAGTTTCTG 57.364 33.333 12.19 0.00 0.00 3.02
1743 4789 8.897872 AATTAGTAGTTTCCGAAGTTTCTGAA 57.102 30.769 0.00 0.00 0.00 3.02
1744 4790 7.941795 TTAGTAGTTTCCGAAGTTTCTGAAG 57.058 36.000 0.00 0.00 33.12 3.02
1746 4792 7.047460 AGTAGTTTCCGAAGTTTCTGAAGTA 57.953 36.000 0.00 0.00 33.12 2.24
1747 4793 7.146648 AGTAGTTTCCGAAGTTTCTGAAGTAG 58.853 38.462 0.00 0.00 33.12 2.57
1748 4794 6.158023 AGTTTCCGAAGTTTCTGAAGTAGA 57.842 37.500 0.00 0.00 33.12 2.59
1749 4795 6.760291 AGTTTCCGAAGTTTCTGAAGTAGAT 58.240 36.000 0.00 0.00 34.80 1.98
1750 4796 6.647067 AGTTTCCGAAGTTTCTGAAGTAGATG 59.353 38.462 0.00 0.00 34.80 2.90
1751 4797 4.495422 TCCGAAGTTTCTGAAGTAGATGC 58.505 43.478 0.00 0.00 34.80 3.91
1752 4798 4.021456 TCCGAAGTTTCTGAAGTAGATGCA 60.021 41.667 0.00 0.00 34.80 3.96
1753 4799 4.690748 CCGAAGTTTCTGAAGTAGATGCAA 59.309 41.667 0.00 0.00 34.80 4.08
1755 4801 6.535150 CCGAAGTTTCTGAAGTAGATGCAATA 59.465 38.462 0.00 0.00 34.80 1.90
1756 4802 7.254252 CCGAAGTTTCTGAAGTAGATGCAATAG 60.254 40.741 0.00 0.00 34.80 1.73
1758 4804 8.854614 AAGTTTCTGAAGTAGATGCAATAGTT 57.145 30.769 0.00 0.00 34.80 2.24
1759 4805 8.485976 AGTTTCTGAAGTAGATGCAATAGTTC 57.514 34.615 17.10 17.10 34.80 3.01
1760 4806 8.317679 AGTTTCTGAAGTAGATGCAATAGTTCT 58.682 33.333 21.36 10.49 34.85 3.01
1762 4808 7.410120 TCTGAAGTAGATGCAATAGTTCTGA 57.590 36.000 22.17 22.17 37.79 3.27
1765 4811 7.615403 TGAAGTAGATGCAATAGTTCTGAAGT 58.385 34.615 21.36 2.89 34.85 3.01
1767 4813 8.485976 AAGTAGATGCAATAGTTCTGAAGTTC 57.514 34.615 2.62 0.00 0.00 3.01
1768 4814 7.846066 AGTAGATGCAATAGTTCTGAAGTTCT 58.154 34.615 2.62 2.10 0.00 3.01
1769 4815 6.981762 AGATGCAATAGTTCTGAAGTTCTG 57.018 37.500 2.62 3.79 0.00 3.02
1771 4817 7.164122 AGATGCAATAGTTCTGAAGTTCTGAA 58.836 34.615 18.19 18.19 32.96 3.02
1772 4818 6.791887 TGCAATAGTTCTGAAGTTCTGAAG 57.208 37.500 21.45 12.66 35.48 3.02
1774 4820 7.441836 TGCAATAGTTCTGAAGTTCTGAAGTA 58.558 34.615 28.14 28.14 41.33 2.24
1775 4821 7.600375 TGCAATAGTTCTGAAGTTCTGAAGTAG 59.400 37.037 28.86 22.01 40.82 2.57
1777 4823 9.868277 CAATAGTTCTGAAGTTCTGAAGTAGAT 57.132 33.333 28.86 22.05 40.82 1.98
1778 4824 9.868277 AATAGTTCTGAAGTTCTGAAGTAGATG 57.132 33.333 28.86 3.51 40.82 2.90
1779 4825 6.162777 AGTTCTGAAGTTCTGAAGTAGATGC 58.837 40.000 23.77 12.45 36.59 3.91
1780 4826 5.728637 TCTGAAGTTCTGAAGTAGATGCA 57.271 39.130 9.78 0.00 34.80 3.96
1781 4827 6.101650 TCTGAAGTTCTGAAGTAGATGCAA 57.898 37.500 9.78 0.00 34.80 4.08
1782 4828 6.705302 TCTGAAGTTCTGAAGTAGATGCAAT 58.295 36.000 9.78 0.00 34.80 3.56
1783 4829 7.840931 TCTGAAGTTCTGAAGTAGATGCAATA 58.159 34.615 9.78 0.00 34.80 1.90
1784 4830 7.761704 TCTGAAGTTCTGAAGTAGATGCAATAC 59.238 37.037 9.78 0.00 34.80 1.89
1785 4831 7.615403 TGAAGTTCTGAAGTAGATGCAATACT 58.385 34.615 8.71 8.71 34.80 2.12
1786 4832 8.749354 TGAAGTTCTGAAGTAGATGCAATACTA 58.251 33.333 13.58 5.26 34.80 1.82
1787 4833 9.243637 GAAGTTCTGAAGTAGATGCAATACTAG 57.756 37.037 13.58 9.53 34.80 2.57
1788 4834 8.299990 AGTTCTGAAGTAGATGCAATACTAGT 57.700 34.615 13.58 0.00 34.80 2.57
1789 4835 8.754080 AGTTCTGAAGTAGATGCAATACTAGTT 58.246 33.333 13.58 14.07 34.80 2.24
1790 4836 9.026074 GTTCTGAAGTAGATGCAATACTAGTTC 57.974 37.037 23.96 23.96 43.52 3.01
2056 6425 1.981256 AGCTGTACACCTTTGTTGGG 58.019 50.000 0.00 0.00 37.15 4.12
2057 6426 0.313987 GCTGTACACCTTTGTTGGGC 59.686 55.000 0.00 0.00 37.15 5.36
2115 6484 0.679960 GGTTTGGAGATCAACCCCGG 60.680 60.000 0.00 0.00 32.43 5.73
2236 6605 4.347607 ACAAGGAAATGAAGGGGAAGATG 58.652 43.478 0.00 0.00 0.00 2.90
2533 6950 6.406093 TGATGAACAAGTTTGCTTTTGTTG 57.594 33.333 7.26 0.62 44.88 3.33
2561 6978 7.518731 TGAACAAGTTTGCTTTTGTAATGAC 57.481 32.000 0.00 0.00 36.56 3.06
2630 7047 4.147219 GTGCAGAACACTTATGGTTGTC 57.853 45.455 0.00 0.00 46.41 3.18
2922 7347 0.326927 GTAGCAAGTAGGCCCCACAA 59.673 55.000 0.00 0.00 0.00 3.33
3051 7477 1.405121 GGTGGTACTAAACTCCCTGCG 60.405 57.143 0.00 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 5.163416 CCTCAAGGGGGCATTGTAAAATTAG 60.163 44.000 0.00 0.00 0.00 1.73
310 2785 2.361757 CAGCCAAAACAACATCCAGTGA 59.638 45.455 0.00 0.00 0.00 3.41
467 3408 7.976734 ACCATGTTAAAATTTGTCGTTTCTGAA 59.023 29.630 0.00 0.00 0.00 3.02
468 3409 7.484975 ACCATGTTAAAATTTGTCGTTTCTGA 58.515 30.769 0.00 0.00 0.00 3.27
469 3410 7.096230 GGACCATGTTAAAATTTGTCGTTTCTG 60.096 37.037 0.00 0.00 0.00 3.02
470 3411 6.921307 GGACCATGTTAAAATTTGTCGTTTCT 59.079 34.615 0.00 0.00 0.00 2.52
471 3412 6.144886 GGGACCATGTTAAAATTTGTCGTTTC 59.855 38.462 0.00 0.00 0.00 2.78
472 3413 5.986741 GGGACCATGTTAAAATTTGTCGTTT 59.013 36.000 0.00 0.00 0.00 3.60
473 3414 5.303333 AGGGACCATGTTAAAATTTGTCGTT 59.697 36.000 0.00 0.00 0.00 3.85
474 3415 4.830600 AGGGACCATGTTAAAATTTGTCGT 59.169 37.500 0.00 0.00 0.00 4.34
475 3416 5.183140 AGAGGGACCATGTTAAAATTTGTCG 59.817 40.000 0.00 0.00 0.00 4.35
476 3417 6.590234 AGAGGGACCATGTTAAAATTTGTC 57.410 37.500 0.00 0.00 0.00 3.18
477 3418 6.994421 AAGAGGGACCATGTTAAAATTTGT 57.006 33.333 0.00 0.00 0.00 2.83
478 3419 7.178451 AGGTAAGAGGGACCATGTTAAAATTTG 59.822 37.037 0.00 0.00 39.65 2.32
479 3420 7.246027 AGGTAAGAGGGACCATGTTAAAATTT 58.754 34.615 0.00 0.00 39.65 1.82
480 3421 6.800890 AGGTAAGAGGGACCATGTTAAAATT 58.199 36.000 0.00 0.00 39.65 1.82
481 3422 6.402981 AGGTAAGAGGGACCATGTTAAAAT 57.597 37.500 0.00 0.00 39.65 1.82
482 3423 5.853572 AGGTAAGAGGGACCATGTTAAAA 57.146 39.130 0.00 0.00 39.65 1.52
483 3424 5.550403 AGAAGGTAAGAGGGACCATGTTAAA 59.450 40.000 0.00 0.00 39.65 1.52
484 3425 5.098663 AGAAGGTAAGAGGGACCATGTTAA 58.901 41.667 0.00 0.00 39.65 2.01
485 3426 4.695606 AGAAGGTAAGAGGGACCATGTTA 58.304 43.478 0.00 0.00 39.65 2.41
486 3427 3.532102 AGAAGGTAAGAGGGACCATGTT 58.468 45.455 0.00 0.00 39.65 2.71
487 3428 3.207044 AGAAGGTAAGAGGGACCATGT 57.793 47.619 0.00 0.00 39.65 3.21
488 3429 4.576330 AAAGAAGGTAAGAGGGACCATG 57.424 45.455 0.00 0.00 39.65 3.66
489 3430 5.600669 AAAAAGAAGGTAAGAGGGACCAT 57.399 39.130 0.00 0.00 39.65 3.55
509 3450 9.280174 CTTACCTTCTTACCTCACATGTAAAAA 57.720 33.333 0.00 0.00 0.00 1.94
510 3451 8.653191 TCTTACCTTCTTACCTCACATGTAAAA 58.347 33.333 0.00 0.00 0.00 1.52
511 3452 8.197592 TCTTACCTTCTTACCTCACATGTAAA 57.802 34.615 0.00 0.00 0.00 2.01
512 3453 7.453752 ACTCTTACCTTCTTACCTCACATGTAA 59.546 37.037 0.00 0.00 0.00 2.41
513 3454 6.952358 ACTCTTACCTTCTTACCTCACATGTA 59.048 38.462 0.00 0.00 0.00 2.29
514 3455 5.780793 ACTCTTACCTTCTTACCTCACATGT 59.219 40.000 0.00 0.00 0.00 3.21
515 3456 6.071334 TGACTCTTACCTTCTTACCTCACATG 60.071 42.308 0.00 0.00 0.00 3.21
516 3457 6.017192 TGACTCTTACCTTCTTACCTCACAT 58.983 40.000 0.00 0.00 0.00 3.21
517 3458 5.391256 TGACTCTTACCTTCTTACCTCACA 58.609 41.667 0.00 0.00 0.00 3.58
518 3459 5.979288 TGACTCTTACCTTCTTACCTCAC 57.021 43.478 0.00 0.00 0.00 3.51
519 3460 6.724441 TGATTGACTCTTACCTTCTTACCTCA 59.276 38.462 0.00 0.00 0.00 3.86
520 3461 7.171630 TGATTGACTCTTACCTTCTTACCTC 57.828 40.000 0.00 0.00 0.00 3.85
521 3462 7.554959 TTGATTGACTCTTACCTTCTTACCT 57.445 36.000 0.00 0.00 0.00 3.08
522 3463 6.314152 GCTTGATTGACTCTTACCTTCTTACC 59.686 42.308 0.00 0.00 0.00 2.85
523 3464 6.314152 GGCTTGATTGACTCTTACCTTCTTAC 59.686 42.308 0.00 0.00 0.00 2.34
524 3465 6.013725 TGGCTTGATTGACTCTTACCTTCTTA 60.014 38.462 0.00 0.00 0.00 2.10
525 3466 5.221925 TGGCTTGATTGACTCTTACCTTCTT 60.222 40.000 0.00 0.00 0.00 2.52
526 3467 4.287067 TGGCTTGATTGACTCTTACCTTCT 59.713 41.667 0.00 0.00 0.00 2.85
527 3468 4.579869 TGGCTTGATTGACTCTTACCTTC 58.420 43.478 0.00 0.00 0.00 3.46
528 3469 4.640771 TGGCTTGATTGACTCTTACCTT 57.359 40.909 0.00 0.00 0.00 3.50
529 3470 4.851639 ATGGCTTGATTGACTCTTACCT 57.148 40.909 0.00 0.00 0.00 3.08
530 3471 4.943705 TGAATGGCTTGATTGACTCTTACC 59.056 41.667 0.00 0.00 0.00 2.85
531 3472 6.690194 ATGAATGGCTTGATTGACTCTTAC 57.310 37.500 0.00 0.00 0.00 2.34
532 3473 6.885918 TCAATGAATGGCTTGATTGACTCTTA 59.114 34.615 7.20 0.00 39.21 2.10
533 3474 5.713389 TCAATGAATGGCTTGATTGACTCTT 59.287 36.000 7.20 0.00 39.21 2.85
534 3475 5.258841 TCAATGAATGGCTTGATTGACTCT 58.741 37.500 7.20 0.00 39.21 3.24
535 3476 5.571784 TCAATGAATGGCTTGATTGACTC 57.428 39.130 7.20 0.00 39.21 3.36
536 3477 5.655090 TCATCAATGAATGGCTTGATTGACT 59.345 36.000 11.40 3.03 44.27 3.41
537 3478 5.898174 TCATCAATGAATGGCTTGATTGAC 58.102 37.500 11.40 0.00 44.27 3.18
538 3479 5.889289 TCTCATCAATGAATGGCTTGATTGA 59.111 36.000 11.50 11.50 45.12 2.57
539 3480 6.144078 TCTCATCAATGAATGGCTTGATTG 57.856 37.500 0.00 0.75 39.47 2.67
540 3481 6.549736 TGATCTCATCAATGAATGGCTTGATT 59.450 34.615 0.00 0.00 39.47 2.57
541 3482 6.068670 TGATCTCATCAATGAATGGCTTGAT 58.931 36.000 0.00 0.00 41.56 2.57
542 3483 5.442391 TGATCTCATCAATGAATGGCTTGA 58.558 37.500 0.00 0.00 36.11 3.02
543 3484 5.767816 TGATCTCATCAATGAATGGCTTG 57.232 39.130 0.00 0.00 36.11 4.01
554 3495 4.736126 TCTTAGCCGTTGATCTCATCAA 57.264 40.909 0.00 0.00 46.30 2.57
555 3496 4.586421 AGATCTTAGCCGTTGATCTCATCA 59.414 41.667 0.00 0.00 41.95 3.07
556 3497 5.132897 AGATCTTAGCCGTTGATCTCATC 57.867 43.478 0.00 0.00 41.95 2.92
557 3498 6.849085 ATAGATCTTAGCCGTTGATCTCAT 57.151 37.500 0.00 0.37 43.80 2.90
558 3499 6.656632 AATAGATCTTAGCCGTTGATCTCA 57.343 37.500 0.00 0.00 43.80 3.27
559 3500 7.954788 AAAATAGATCTTAGCCGTTGATCTC 57.045 36.000 0.00 0.00 43.80 2.75
563 3504 9.909644 GAGTATAAAATAGATCTTAGCCGTTGA 57.090 33.333 0.00 0.00 0.00 3.18
564 3505 9.915629 AGAGTATAAAATAGATCTTAGCCGTTG 57.084 33.333 0.00 0.00 0.00 4.10
583 3524 9.475620 TCTTTTCACATGAGAGGTAAGAGTATA 57.524 33.333 0.00 0.00 0.00 1.47
584 3525 8.367660 TCTTTTCACATGAGAGGTAAGAGTAT 57.632 34.615 0.00 0.00 0.00 2.12
585 3526 7.776618 TCTTTTCACATGAGAGGTAAGAGTA 57.223 36.000 0.00 0.00 0.00 2.59
586 3527 6.672266 TCTTTTCACATGAGAGGTAAGAGT 57.328 37.500 0.00 0.00 0.00 3.24
594 3535 2.307098 ACCCCCTCTTTTCACATGAGAG 59.693 50.000 0.00 0.00 37.30 3.20
595 3536 2.348472 ACCCCCTCTTTTCACATGAGA 58.652 47.619 0.00 0.00 0.00 3.27
596 3537 2.887151 ACCCCCTCTTTTCACATGAG 57.113 50.000 0.00 0.00 0.00 2.90
597 3538 3.913799 TCTTACCCCCTCTTTTCACATGA 59.086 43.478 0.00 0.00 0.00 3.07
598 3539 4.265073 CTCTTACCCCCTCTTTTCACATG 58.735 47.826 0.00 0.00 0.00 3.21
599 3540 3.267031 CCTCTTACCCCCTCTTTTCACAT 59.733 47.826 0.00 0.00 0.00 3.21
600 3541 2.642807 CCTCTTACCCCCTCTTTTCACA 59.357 50.000 0.00 0.00 0.00 3.58
601 3542 2.026169 CCCTCTTACCCCCTCTTTTCAC 60.026 54.545 0.00 0.00 0.00 3.18
602 3543 2.157911 TCCCTCTTACCCCCTCTTTTCA 60.158 50.000 0.00 0.00 0.00 2.69
603 3544 2.239150 GTCCCTCTTACCCCCTCTTTTC 59.761 54.545 0.00 0.00 0.00 2.29
604 3545 2.276391 GTCCCTCTTACCCCCTCTTTT 58.724 52.381 0.00 0.00 0.00 2.27
605 3546 1.557426 GGTCCCTCTTACCCCCTCTTT 60.557 57.143 0.00 0.00 0.00 2.52
606 3547 0.044397 GGTCCCTCTTACCCCCTCTT 59.956 60.000 0.00 0.00 0.00 2.85
607 3548 1.160289 TGGTCCCTCTTACCCCCTCT 61.160 60.000 0.00 0.00 36.06 3.69
608 3549 0.029989 ATGGTCCCTCTTACCCCCTC 60.030 60.000 0.00 0.00 36.06 4.30
609 3550 0.327576 CATGGTCCCTCTTACCCCCT 60.328 60.000 0.00 0.00 36.06 4.79
610 3551 0.623617 ACATGGTCCCTCTTACCCCC 60.624 60.000 0.00 0.00 36.06 5.40
611 3552 1.296002 AACATGGTCCCTCTTACCCC 58.704 55.000 0.00 0.00 36.06 4.95
612 3553 4.579647 TTTAACATGGTCCCTCTTACCC 57.420 45.455 0.00 0.00 36.06 3.69
613 3554 5.414765 CAGTTTTAACATGGTCCCTCTTACC 59.585 44.000 0.00 0.00 37.53 2.85
614 3555 5.106277 GCAGTTTTAACATGGTCCCTCTTAC 60.106 44.000 0.00 0.00 0.00 2.34
615 3556 5.007682 GCAGTTTTAACATGGTCCCTCTTA 58.992 41.667 0.00 0.00 0.00 2.10
616 3557 3.826729 GCAGTTTTAACATGGTCCCTCTT 59.173 43.478 0.00 0.00 0.00 2.85
617 3558 3.074538 AGCAGTTTTAACATGGTCCCTCT 59.925 43.478 0.00 0.00 0.00 3.69
618 3559 3.421844 AGCAGTTTTAACATGGTCCCTC 58.578 45.455 0.00 0.00 0.00 4.30
619 3560 3.074538 AGAGCAGTTTTAACATGGTCCCT 59.925 43.478 14.65 0.00 41.26 4.20
620 3561 3.421844 AGAGCAGTTTTAACATGGTCCC 58.578 45.455 14.65 0.00 41.26 4.46
621 3562 4.518970 TGAAGAGCAGTTTTAACATGGTCC 59.481 41.667 14.65 0.00 41.26 4.46
622 3563 5.470098 TCTGAAGAGCAGTTTTAACATGGTC 59.530 40.000 0.00 12.28 45.14 4.02
623 3564 5.376625 TCTGAAGAGCAGTTTTAACATGGT 58.623 37.500 0.00 0.00 45.14 3.55
624 3565 5.947228 TCTGAAGAGCAGTTTTAACATGG 57.053 39.130 0.00 0.00 45.14 3.66
625 3566 7.195646 TGTTTCTGAAGAGCAGTTTTAACATG 58.804 34.615 0.00 0.00 45.14 3.21
626 3567 7.333528 TGTTTCTGAAGAGCAGTTTTAACAT 57.666 32.000 0.00 0.00 45.14 2.71
627 3568 6.183360 CCTGTTTCTGAAGAGCAGTTTTAACA 60.183 38.462 13.56 0.00 45.14 2.41
628 3569 6.038271 TCCTGTTTCTGAAGAGCAGTTTTAAC 59.962 38.462 13.56 0.00 45.14 2.01
629 3570 6.119536 TCCTGTTTCTGAAGAGCAGTTTTAA 58.880 36.000 13.56 0.00 45.14 1.52
630 3571 5.680619 TCCTGTTTCTGAAGAGCAGTTTTA 58.319 37.500 13.56 0.73 45.14 1.52
631 3572 4.526970 TCCTGTTTCTGAAGAGCAGTTTT 58.473 39.130 13.56 0.00 45.14 2.43
632 3573 4.133078 CTCCTGTTTCTGAAGAGCAGTTT 58.867 43.478 13.56 0.00 45.14 2.66
633 3574 3.389329 TCTCCTGTTTCTGAAGAGCAGTT 59.611 43.478 13.56 0.00 45.14 3.16
634 3575 2.968574 TCTCCTGTTTCTGAAGAGCAGT 59.031 45.455 13.56 0.00 45.14 4.40
635 3576 3.674528 TCTCCTGTTTCTGAAGAGCAG 57.325 47.619 9.97 9.97 46.31 4.24
636 3577 4.130118 GTTTCTCCTGTTTCTGAAGAGCA 58.870 43.478 0.00 0.00 0.00 4.26
637 3578 3.500299 GGTTTCTCCTGTTTCTGAAGAGC 59.500 47.826 0.83 0.00 0.00 4.09
638 3579 4.708177 TGGTTTCTCCTGTTTCTGAAGAG 58.292 43.478 0.00 0.00 37.07 2.85
639 3580 4.771114 TGGTTTCTCCTGTTTCTGAAGA 57.229 40.909 0.00 0.00 37.07 2.87
640 3581 5.221126 CCTTTGGTTTCTCCTGTTTCTGAAG 60.221 44.000 0.00 0.00 37.07 3.02
683 3624 1.271707 CCCTTTGGCCCTCGAAAACTA 60.272 52.381 0.00 0.00 0.00 2.24
981 3997 0.541998 TTCTCTTGGCAGACGGAGGA 60.542 55.000 8.27 0.00 0.00 3.71
1020 4036 2.593956 GGCAGACGGAGGGGAGTTT 61.594 63.158 0.00 0.00 0.00 2.66
1380 4400 6.644347 TCAGAACTTCAGAAACTTCAGAACT 58.356 36.000 3.95 0.00 30.88 3.01
1381 4401 6.910536 TCAGAACTTCAGAAACTTCAGAAC 57.089 37.500 3.95 0.00 30.88 3.01
1382 4402 7.106239 ACTTCAGAACTTCAGAAACTTCAGAA 58.894 34.615 0.00 7.39 32.75 3.02
1383 4403 6.644347 ACTTCAGAACTTCAGAAACTTCAGA 58.356 36.000 0.00 0.00 0.00 3.27
1384 4404 6.917217 ACTTCAGAACTTCAGAAACTTCAG 57.083 37.500 0.00 0.00 0.00 3.02
1385 4405 7.607991 AGAAACTTCAGAACTTCAGAAACTTCA 59.392 33.333 14.06 0.00 0.00 3.02
1386 4406 7.907563 CAGAAACTTCAGAACTTCAGAAACTTC 59.092 37.037 0.00 4.64 0.00 3.01
1387 4407 7.391833 ACAGAAACTTCAGAACTTCAGAAACTT 59.608 33.333 0.00 0.00 0.00 2.66
1388 4408 6.881602 ACAGAAACTTCAGAACTTCAGAAACT 59.118 34.615 0.00 0.00 0.00 2.66
1389 4409 7.065204 AGACAGAAACTTCAGAACTTCAGAAAC 59.935 37.037 0.00 0.00 0.00 2.78
1390 4410 7.106239 AGACAGAAACTTCAGAACTTCAGAAA 58.894 34.615 0.00 0.00 0.00 2.52
1391 4411 6.644347 AGACAGAAACTTCAGAACTTCAGAA 58.356 36.000 0.00 0.00 0.00 3.02
1392 4412 6.227298 AGACAGAAACTTCAGAACTTCAGA 57.773 37.500 3.95 0.00 0.00 3.27
1393 4413 8.600449 ATTAGACAGAAACTTCAGAACTTCAG 57.400 34.615 3.95 0.00 0.00 3.02
1394 4414 8.964476 AATTAGACAGAAACTTCAGAACTTCA 57.036 30.769 3.95 0.00 0.00 3.02
1423 4443 8.994170 GCATCTACTTCAGAAACTTTAGAAACT 58.006 33.333 0.00 0.00 36.67 2.66
1424 4444 8.774586 TGCATCTACTTCAGAAACTTTAGAAAC 58.225 33.333 0.00 0.00 36.67 2.78
1425 4445 8.902540 TGCATCTACTTCAGAAACTTTAGAAA 57.097 30.769 0.00 0.00 36.67 2.52
1426 4446 8.902540 TTGCATCTACTTCAGAAACTTTAGAA 57.097 30.769 0.00 0.00 36.67 2.10
1429 4449 9.944376 ACTATTGCATCTACTTCAGAAACTTTA 57.056 29.630 0.00 0.00 36.67 1.85
1430 4450 8.854614 ACTATTGCATCTACTTCAGAAACTTT 57.145 30.769 0.00 0.00 36.67 2.66
1431 4451 8.854614 AACTATTGCATCTACTTCAGAAACTT 57.145 30.769 0.00 0.00 36.67 2.66
1432 4452 8.317679 AGAACTATTGCATCTACTTCAGAAACT 58.682 33.333 0.00 0.00 36.67 2.66
1433 4453 8.386606 CAGAACTATTGCATCTACTTCAGAAAC 58.613 37.037 0.00 0.00 36.67 2.78
1434 4454 8.314021 TCAGAACTATTGCATCTACTTCAGAAA 58.686 33.333 0.00 0.00 36.67 2.52
1435 4455 7.840931 TCAGAACTATTGCATCTACTTCAGAA 58.159 34.615 0.00 0.00 36.67 3.02
1436 4456 7.410120 TCAGAACTATTGCATCTACTTCAGA 57.590 36.000 0.00 0.00 37.79 3.27
1437 4457 7.763528 ACTTCAGAACTATTGCATCTACTTCAG 59.236 37.037 0.00 0.00 0.00 3.02
1438 4458 7.615403 ACTTCAGAACTATTGCATCTACTTCA 58.385 34.615 0.00 0.00 0.00 3.02
1439 4459 8.485976 AACTTCAGAACTATTGCATCTACTTC 57.514 34.615 0.00 0.00 0.00 3.01
1440 4460 8.317679 AGAACTTCAGAACTATTGCATCTACTT 58.682 33.333 0.00 0.00 0.00 2.24
1441 4461 7.763528 CAGAACTTCAGAACTATTGCATCTACT 59.236 37.037 0.00 0.00 0.00 2.57
1442 4462 7.761704 TCAGAACTTCAGAACTATTGCATCTAC 59.238 37.037 0.00 0.00 0.00 2.59
1443 4463 7.840931 TCAGAACTTCAGAACTATTGCATCTA 58.159 34.615 0.00 0.00 0.00 1.98
1444 4464 6.705302 TCAGAACTTCAGAACTATTGCATCT 58.295 36.000 0.00 0.00 0.00 2.90
1445 4465 6.974932 TCAGAACTTCAGAACTATTGCATC 57.025 37.500 0.00 0.00 0.00 3.91
1446 4466 6.939163 ACTTCAGAACTTCAGAACTATTGCAT 59.061 34.615 0.00 0.00 0.00 3.96
1447 4467 6.291377 ACTTCAGAACTTCAGAACTATTGCA 58.709 36.000 0.00 0.00 0.00 4.08
1448 4468 6.793492 ACTTCAGAACTTCAGAACTATTGC 57.207 37.500 0.00 0.00 0.00 3.56
1449 4469 9.868277 ATCTACTTCAGAACTTCAGAACTATTG 57.132 33.333 0.00 0.00 36.67 1.90
1450 4470 9.868277 CATCTACTTCAGAACTTCAGAACTATT 57.132 33.333 0.00 0.00 36.67 1.73
1451 4471 7.978975 GCATCTACTTCAGAACTTCAGAACTAT 59.021 37.037 0.00 0.00 36.67 2.12
1452 4472 7.039714 TGCATCTACTTCAGAACTTCAGAACTA 60.040 37.037 0.00 0.00 36.67 2.24
1453 4473 6.162777 GCATCTACTTCAGAACTTCAGAACT 58.837 40.000 0.00 0.00 36.67 3.01
1454 4474 5.928839 TGCATCTACTTCAGAACTTCAGAAC 59.071 40.000 0.00 0.00 36.67 3.01
1455 4475 6.101650 TGCATCTACTTCAGAACTTCAGAA 57.898 37.500 0.00 0.00 36.67 3.02
1456 4476 5.728637 TGCATCTACTTCAGAACTTCAGA 57.271 39.130 0.00 0.00 36.67 3.27
1457 4477 6.981762 ATTGCATCTACTTCAGAACTTCAG 57.018 37.500 0.00 0.00 36.67 3.02
1458 4478 7.615403 AGTATTGCATCTACTTCAGAACTTCA 58.385 34.615 4.14 0.00 36.67 3.02
1459 4479 9.243637 CTAGTATTGCATCTACTTCAGAACTTC 57.756 37.037 13.00 0.00 36.67 3.01
1460 4480 8.754080 ACTAGTATTGCATCTACTTCAGAACTT 58.246 33.333 13.00 0.00 36.67 2.66
1461 4481 8.299990 ACTAGTATTGCATCTACTTCAGAACT 57.700 34.615 13.00 0.00 36.67 3.01
1462 4482 8.934507 AACTAGTATTGCATCTACTTCAGAAC 57.065 34.615 13.00 0.00 36.67 3.01
1463 4483 8.972127 AGAACTAGTATTGCATCTACTTCAGAA 58.028 33.333 13.00 0.00 36.67 3.02
1464 4484 8.409371 CAGAACTAGTATTGCATCTACTTCAGA 58.591 37.037 13.00 0.00 37.79 3.27
1465 4485 8.409371 TCAGAACTAGTATTGCATCTACTTCAG 58.591 37.037 13.00 9.00 31.96 3.02
1466 4486 8.293699 TCAGAACTAGTATTGCATCTACTTCA 57.706 34.615 13.00 0.00 31.96 3.02
1467 4487 9.243637 CTTCAGAACTAGTATTGCATCTACTTC 57.756 37.037 13.00 6.82 31.96 3.01
1468 4488 8.754080 ACTTCAGAACTAGTATTGCATCTACTT 58.246 33.333 13.00 0.00 31.96 2.24
1469 4489 8.299990 ACTTCAGAACTAGTATTGCATCTACT 57.700 34.615 12.53 12.53 34.01 2.57
1470 4490 8.934507 AACTTCAGAACTAGTATTGCATCTAC 57.065 34.615 0.00 0.00 0.00 2.59
1471 4491 8.972127 AGAACTTCAGAACTAGTATTGCATCTA 58.028 33.333 0.00 0.00 0.00 1.98
1472 4492 7.763528 CAGAACTTCAGAACTAGTATTGCATCT 59.236 37.037 0.00 0.00 0.00 2.90
1473 4493 7.761704 TCAGAACTTCAGAACTAGTATTGCATC 59.238 37.037 0.00 0.00 0.00 3.91
1474 4494 7.615403 TCAGAACTTCAGAACTAGTATTGCAT 58.385 34.615 0.00 0.00 0.00 3.96
1475 4495 6.993079 TCAGAACTTCAGAACTAGTATTGCA 58.007 36.000 0.00 0.00 0.00 4.08
1476 4496 7.600752 ACTTCAGAACTTCAGAACTAGTATTGC 59.399 37.037 0.00 0.00 0.00 3.56
1477 4497 9.482627 AACTTCAGAACTTCAGAACTAGTATTG 57.517 33.333 0.00 0.00 0.00 1.90
1479 4499 9.699703 GAAACTTCAGAACTTCAGAACTAGTAT 57.300 33.333 0.00 0.00 0.00 2.12
1480 4500 8.915036 AGAAACTTCAGAACTTCAGAACTAGTA 58.085 33.333 0.00 0.00 0.00 1.82
1481 4501 7.708752 CAGAAACTTCAGAACTTCAGAACTAGT 59.291 37.037 0.00 0.00 0.00 2.57
1482 4502 7.923344 TCAGAAACTTCAGAACTTCAGAACTAG 59.077 37.037 0.00 0.00 0.00 2.57
1483 4503 7.782049 TCAGAAACTTCAGAACTTCAGAACTA 58.218 34.615 3.95 0.00 0.00 2.24
1484 4504 6.644347 TCAGAAACTTCAGAACTTCAGAACT 58.356 36.000 3.95 0.00 0.00 3.01
1485 4505 6.910536 TCAGAAACTTCAGAACTTCAGAAC 57.089 37.500 3.95 0.00 0.00 3.01
1486 4506 7.106239 ACTTCAGAAACTTCAGAACTTCAGAA 58.894 34.615 7.39 7.39 30.88 3.02
1487 4507 6.644347 ACTTCAGAAACTTCAGAACTTCAGA 58.356 36.000 3.95 0.00 30.88 3.27
1488 4508 6.917217 ACTTCAGAAACTTCAGAACTTCAG 57.083 37.500 3.95 0.00 30.88 3.02
1489 4509 7.065085 CAGAACTTCAGAAACTTCAGAACTTCA 59.935 37.037 13.88 0.00 32.90 3.02
1490 4510 7.278868 TCAGAACTTCAGAAACTTCAGAACTTC 59.721 37.037 7.96 7.96 31.81 3.01
1491 4511 7.106239 TCAGAACTTCAGAAACTTCAGAACTT 58.894 34.615 3.95 0.00 30.88 2.66
1503 4523 6.644347 AGACAGAAACTTCAGAACTTCAGAA 58.356 36.000 0.00 0.00 0.00 3.02
1504 4524 6.227298 AGACAGAAACTTCAGAACTTCAGA 57.773 37.500 3.95 0.00 0.00 3.27
1505 4525 8.600449 ATTAGACAGAAACTTCAGAACTTCAG 57.400 34.615 3.95 0.00 0.00 3.02
1506 4526 8.964476 AATTAGACAGAAACTTCAGAACTTCA 57.036 30.769 3.95 0.00 0.00 3.02
1535 4555 8.960591 TCAGAAAGTTCAGAAATTTCAGAAACT 58.039 29.630 28.79 20.76 35.03 2.66
1536 4556 9.573133 TTCAGAAAGTTCAGAAATTTCAGAAAC 57.427 29.630 27.80 19.30 36.28 2.78
1537 4557 9.793252 CTTCAGAAAGTTCAGAAATTTCAGAAA 57.207 29.630 28.70 20.82 37.72 2.52
1538 4558 8.960591 ACTTCAGAAAGTTCAGAAATTTCAGAA 58.039 29.630 27.89 27.89 43.28 3.02
1539 4559 8.511604 ACTTCAGAAAGTTCAGAAATTTCAGA 57.488 30.769 28.79 24.82 43.28 3.27
1540 4560 9.875675 CTACTTCAGAAAGTTCAGAAATTTCAG 57.124 33.333 28.79 23.36 43.28 3.02
1541 4561 9.613428 TCTACTTCAGAAAGTTCAGAAATTTCA 57.387 29.630 28.79 13.27 43.28 2.69
1544 4564 8.510505 GCATCTACTTCAGAAAGTTCAGAAATT 58.489 33.333 0.00 0.00 43.28 1.82
1545 4565 7.663081 TGCATCTACTTCAGAAAGTTCAGAAAT 59.337 33.333 0.00 0.00 43.28 2.17
1546 4566 6.992123 TGCATCTACTTCAGAAAGTTCAGAAA 59.008 34.615 0.00 0.00 43.28 2.52
1547 4567 6.524734 TGCATCTACTTCAGAAAGTTCAGAA 58.475 36.000 0.00 0.00 43.28 3.02
1548 4568 6.101650 TGCATCTACTTCAGAAAGTTCAGA 57.898 37.500 0.00 0.00 43.28 3.27
1549 4569 6.791887 TTGCATCTACTTCAGAAAGTTCAG 57.208 37.500 0.00 0.00 43.28 3.02
1550 4570 8.097038 ACTATTGCATCTACTTCAGAAAGTTCA 58.903 33.333 0.00 0.00 43.28 3.18
1551 4571 8.485976 ACTATTGCATCTACTTCAGAAAGTTC 57.514 34.615 0.00 0.00 43.28 3.01
1552 4572 8.854614 AACTATTGCATCTACTTCAGAAAGTT 57.145 30.769 0.00 0.00 43.28 2.66
1554 4574 8.602328 CAGAACTATTGCATCTACTTCAGAAAG 58.398 37.037 0.00 0.00 36.67 2.62
1555 4575 8.314021 TCAGAACTATTGCATCTACTTCAGAAA 58.686 33.333 0.00 0.00 36.67 2.52
1556 4576 7.840931 TCAGAACTATTGCATCTACTTCAGAA 58.159 34.615 0.00 0.00 36.67 3.02
1557 4577 7.410120 TCAGAACTATTGCATCTACTTCAGA 57.590 36.000 0.00 0.00 37.79 3.27
1558 4578 7.763528 ACTTCAGAACTATTGCATCTACTTCAG 59.236 37.037 0.00 0.00 0.00 3.02
1559 4579 7.615403 ACTTCAGAACTATTGCATCTACTTCA 58.385 34.615 0.00 0.00 0.00 3.02
1560 4580 8.485976 AACTTCAGAACTATTGCATCTACTTC 57.514 34.615 0.00 0.00 0.00 3.01
1561 4581 8.317679 AGAACTTCAGAACTATTGCATCTACTT 58.682 33.333 0.00 0.00 0.00 2.24
1562 4582 7.763528 CAGAACTTCAGAACTATTGCATCTACT 59.236 37.037 0.00 0.00 0.00 2.57
1563 4583 7.761704 TCAGAACTTCAGAACTATTGCATCTAC 59.238 37.037 0.00 0.00 0.00 2.59
1564 4584 7.840931 TCAGAACTTCAGAACTATTGCATCTA 58.159 34.615 0.00 0.00 0.00 1.98
1565 4585 6.705302 TCAGAACTTCAGAACTATTGCATCT 58.295 36.000 0.00 0.00 0.00 2.90
1566 4586 6.974932 TCAGAACTTCAGAACTATTGCATC 57.025 37.500 0.00 0.00 0.00 3.91
1567 4587 6.939163 ACTTCAGAACTTCAGAACTATTGCAT 59.061 34.615 0.00 0.00 0.00 3.96
1568 4588 6.291377 ACTTCAGAACTTCAGAACTATTGCA 58.709 36.000 0.00 0.00 0.00 4.08
1569 4589 6.793492 ACTTCAGAACTTCAGAACTATTGC 57.207 37.500 0.00 0.00 0.00 3.56
1570 4590 9.868277 ATCTACTTCAGAACTTCAGAACTATTG 57.132 33.333 0.00 0.00 36.67 1.90
1571 4591 9.868277 CATCTACTTCAGAACTTCAGAACTATT 57.132 33.333 0.00 0.00 36.67 1.73
1572 4592 7.978975 GCATCTACTTCAGAACTTCAGAACTAT 59.021 37.037 0.00 0.00 36.67 2.12
1573 4593 7.039714 TGCATCTACTTCAGAACTTCAGAACTA 60.040 37.037 0.00 0.00 36.67 2.24
1574 4594 6.162777 GCATCTACTTCAGAACTTCAGAACT 58.837 40.000 0.00 0.00 36.67 3.01
1575 4595 5.928839 TGCATCTACTTCAGAACTTCAGAAC 59.071 40.000 0.00 0.00 36.67 3.01
1576 4596 6.101650 TGCATCTACTTCAGAACTTCAGAA 57.898 37.500 0.00 0.00 36.67 3.02
1577 4597 5.728637 TGCATCTACTTCAGAACTTCAGA 57.271 39.130 0.00 0.00 36.67 3.27
1578 4598 6.981762 ATTGCATCTACTTCAGAACTTCAG 57.018 37.500 0.00 0.00 36.67 3.02
1579 4599 7.615403 AGTATTGCATCTACTTCAGAACTTCA 58.385 34.615 4.14 0.00 36.67 3.02
1580 4600 9.243637 CTAGTATTGCATCTACTTCAGAACTTC 57.756 37.037 13.00 0.00 36.67 3.01
1581 4601 8.754080 ACTAGTATTGCATCTACTTCAGAACTT 58.246 33.333 13.00 0.00 36.67 2.66
1582 4602 8.299990 ACTAGTATTGCATCTACTTCAGAACT 57.700 34.615 13.00 0.00 36.67 3.01
1583 4603 8.934507 AACTAGTATTGCATCTACTTCAGAAC 57.065 34.615 13.00 0.00 36.67 3.01
1584 4604 8.972127 AGAACTAGTATTGCATCTACTTCAGAA 58.028 33.333 13.00 0.00 36.67 3.02
1585 4605 8.409371 CAGAACTAGTATTGCATCTACTTCAGA 58.591 37.037 13.00 0.00 37.79 3.27
1586 4606 8.409371 TCAGAACTAGTATTGCATCTACTTCAG 58.591 37.037 13.00 9.00 31.96 3.02
1587 4607 8.293699 TCAGAACTAGTATTGCATCTACTTCA 57.706 34.615 13.00 0.00 31.96 3.02
1588 4608 9.243637 CTTCAGAACTAGTATTGCATCTACTTC 57.756 37.037 13.00 6.82 31.96 3.01
1589 4609 8.754080 ACTTCAGAACTAGTATTGCATCTACTT 58.246 33.333 13.00 0.00 31.96 2.24
1590 4610 8.299990 ACTTCAGAACTAGTATTGCATCTACT 57.700 34.615 12.53 12.53 34.01 2.57
1591 4611 8.934507 AACTTCAGAACTAGTATTGCATCTAC 57.065 34.615 0.00 0.00 0.00 2.59
1592 4612 8.972127 AGAACTTCAGAACTAGTATTGCATCTA 58.028 33.333 0.00 0.00 0.00 1.98
1593 4613 7.763528 CAGAACTTCAGAACTAGTATTGCATCT 59.236 37.037 0.00 0.00 0.00 2.90
1594 4614 7.761704 TCAGAACTTCAGAACTAGTATTGCATC 59.238 37.037 0.00 0.00 0.00 3.91
1595 4615 7.615403 TCAGAACTTCAGAACTAGTATTGCAT 58.385 34.615 0.00 0.00 0.00 3.96
1596 4616 6.993079 TCAGAACTTCAGAACTAGTATTGCA 58.007 36.000 0.00 0.00 0.00 4.08
1597 4617 7.600752 ACTTCAGAACTTCAGAACTAGTATTGC 59.399 37.037 0.00 0.00 0.00 3.56
1598 4618 9.482627 AACTTCAGAACTTCAGAACTAGTATTG 57.517 33.333 0.00 0.00 0.00 1.90
1600 4620 9.699703 GAAACTTCAGAACTTCAGAACTAGTAT 57.300 33.333 0.00 0.00 0.00 2.12
1601 4621 8.915036 AGAAACTTCAGAACTTCAGAACTAGTA 58.085 33.333 0.00 0.00 0.00 1.82
1602 4622 7.708752 CAGAAACTTCAGAACTTCAGAACTAGT 59.291 37.037 0.00 0.00 0.00 2.57
1603 4623 7.708752 ACAGAAACTTCAGAACTTCAGAACTAG 59.291 37.037 0.00 0.00 0.00 2.57
1604 4624 7.556844 ACAGAAACTTCAGAACTTCAGAACTA 58.443 34.615 3.95 0.00 0.00 2.24
1605 4625 6.410540 ACAGAAACTTCAGAACTTCAGAACT 58.589 36.000 3.95 0.00 0.00 3.01
1606 4626 6.536941 AGACAGAAACTTCAGAACTTCAGAAC 59.463 38.462 3.95 0.00 0.00 3.01
1729 4775 4.021456 TGCATCTACTTCAGAAACTTCGGA 60.021 41.667 0.00 0.00 36.67 4.55
1730 4776 4.245660 TGCATCTACTTCAGAAACTTCGG 58.754 43.478 0.00 0.00 36.67 4.30
1731 4777 5.845985 TTGCATCTACTTCAGAAACTTCG 57.154 39.130 0.00 0.00 36.67 3.79
1732 4778 8.485976 ACTATTGCATCTACTTCAGAAACTTC 57.514 34.615 0.00 0.00 36.67 3.01
1733 4779 8.854614 AACTATTGCATCTACTTCAGAAACTT 57.145 30.769 0.00 0.00 36.67 2.66
1734 4780 8.317679 AGAACTATTGCATCTACTTCAGAAACT 58.682 33.333 0.00 0.00 36.67 2.66
1735 4781 8.386606 CAGAACTATTGCATCTACTTCAGAAAC 58.613 37.037 0.00 0.00 36.67 2.78
1736 4782 8.314021 TCAGAACTATTGCATCTACTTCAGAAA 58.686 33.333 0.00 0.00 36.67 2.52
1739 4785 7.763528 ACTTCAGAACTATTGCATCTACTTCAG 59.236 37.037 0.00 0.00 0.00 3.02
1740 4786 7.615403 ACTTCAGAACTATTGCATCTACTTCA 58.385 34.615 0.00 0.00 0.00 3.02
1741 4787 8.485976 AACTTCAGAACTATTGCATCTACTTC 57.514 34.615 0.00 0.00 0.00 3.01
1743 4789 7.763528 CAGAACTTCAGAACTATTGCATCTACT 59.236 37.037 0.00 0.00 0.00 2.57
1744 4790 7.761704 TCAGAACTTCAGAACTATTGCATCTAC 59.238 37.037 0.00 0.00 0.00 2.59
1746 4792 6.705302 TCAGAACTTCAGAACTATTGCATCT 58.295 36.000 0.00 0.00 0.00 2.90
1747 4793 6.974932 TCAGAACTTCAGAACTATTGCATC 57.025 37.500 0.00 0.00 0.00 3.91
1748 4794 6.939163 ACTTCAGAACTTCAGAACTATTGCAT 59.061 34.615 0.00 0.00 0.00 3.96
1749 4795 6.291377 ACTTCAGAACTTCAGAACTATTGCA 58.709 36.000 0.00 0.00 0.00 4.08
1750 4796 6.793492 ACTTCAGAACTTCAGAACTATTGC 57.207 37.500 0.00 0.00 0.00 3.56
1751 4797 9.868277 ATCTACTTCAGAACTTCAGAACTATTG 57.132 33.333 0.00 0.00 36.67 1.90
1752 4798 9.868277 CATCTACTTCAGAACTTCAGAACTATT 57.132 33.333 0.00 0.00 36.67 1.73
1753 4799 7.978975 GCATCTACTTCAGAACTTCAGAACTAT 59.021 37.037 0.00 0.00 36.67 2.12
1755 4801 6.162777 GCATCTACTTCAGAACTTCAGAACT 58.837 40.000 0.00 0.00 36.67 3.01
1756 4802 5.928839 TGCATCTACTTCAGAACTTCAGAAC 59.071 40.000 0.00 0.00 36.67 3.01
1758 4804 5.728637 TGCATCTACTTCAGAACTTCAGA 57.271 39.130 0.00 0.00 36.67 3.27
1759 4805 6.981762 ATTGCATCTACTTCAGAACTTCAG 57.018 37.500 0.00 0.00 36.67 3.02
1760 4806 7.615403 AGTATTGCATCTACTTCAGAACTTCA 58.385 34.615 4.14 0.00 36.67 3.02
1762 4808 8.754080 ACTAGTATTGCATCTACTTCAGAACTT 58.246 33.333 13.00 0.00 36.67 2.66
1765 4811 8.972127 AGAACTAGTATTGCATCTACTTCAGAA 58.028 33.333 13.00 0.00 36.67 3.02
1767 4813 8.409371 TCAGAACTAGTATTGCATCTACTTCAG 58.591 37.037 13.00 9.00 31.96 3.02
1768 4814 8.293699 TCAGAACTAGTATTGCATCTACTTCA 57.706 34.615 13.00 0.00 31.96 3.02
1769 4815 9.243637 CTTCAGAACTAGTATTGCATCTACTTC 57.756 37.037 13.00 6.82 31.96 3.01
1771 4817 8.299990 ACTTCAGAACTAGTATTGCATCTACT 57.700 34.615 12.53 12.53 34.01 2.57
1772 4818 8.934507 AACTTCAGAACTAGTATTGCATCTAC 57.065 34.615 0.00 0.00 0.00 2.59
1774 4820 7.763528 CAGAACTTCAGAACTAGTATTGCATCT 59.236 37.037 0.00 0.00 0.00 2.90
1775 4821 7.761704 TCAGAACTTCAGAACTAGTATTGCATC 59.238 37.037 0.00 0.00 0.00 3.91
1777 4823 6.993079 TCAGAACTTCAGAACTAGTATTGCA 58.007 36.000 0.00 0.00 0.00 4.08
1778 4824 7.600752 ACTTCAGAACTTCAGAACTAGTATTGC 59.399 37.037 0.00 0.00 0.00 3.56
1779 4825 9.482627 AACTTCAGAACTTCAGAACTAGTATTG 57.517 33.333 0.00 0.00 0.00 1.90
1781 4827 9.699703 GAAACTTCAGAACTTCAGAACTAGTAT 57.300 33.333 0.00 0.00 0.00 2.12
1782 4828 8.915036 AGAAACTTCAGAACTTCAGAACTAGTA 58.085 33.333 0.00 0.00 0.00 1.82
1783 4829 7.708752 CAGAAACTTCAGAACTTCAGAACTAGT 59.291 37.037 0.00 0.00 0.00 2.57
1784 4830 7.708752 ACAGAAACTTCAGAACTTCAGAACTAG 59.291 37.037 0.00 0.00 0.00 2.57
1785 4831 7.556844 ACAGAAACTTCAGAACTTCAGAACTA 58.443 34.615 3.95 0.00 0.00 2.24
1786 4832 6.410540 ACAGAAACTTCAGAACTTCAGAACT 58.589 36.000 3.95 0.00 0.00 3.01
1787 4833 6.536941 AGACAGAAACTTCAGAACTTCAGAAC 59.463 38.462 3.95 0.00 0.00 3.01
1788 4834 6.644347 AGACAGAAACTTCAGAACTTCAGAA 58.356 36.000 0.00 0.00 0.00 3.02
1789 4835 6.227298 AGACAGAAACTTCAGAACTTCAGA 57.773 37.500 3.95 0.00 0.00 3.27
1790 4836 8.600449 ATTAGACAGAAACTTCAGAACTTCAG 57.400 34.615 3.95 0.00 0.00 3.02
2115 6484 0.366871 CTGCATGTCGACGTACTTGC 59.633 55.000 17.78 17.78 45.72 4.01
2236 6605 4.502645 CGTTTGTGGTCCAATTTCTTGTTC 59.497 41.667 0.00 0.00 31.81 3.18
2533 6950 5.590104 ACAAAAGCAAACTTGTTCAACAC 57.410 34.783 0.00 0.00 35.85 3.32
2561 6978 6.567769 ACATAACAAAAGCAAACTTGTTCG 57.432 33.333 3.62 0.84 43.06 3.95
2630 7047 8.681806 ACTACTATATAGCAGTAGCATCACATG 58.318 37.037 13.09 0.00 46.25 3.21
3036 7462 1.619807 GGGGCGCAGGGAGTTTAGTA 61.620 60.000 10.83 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.