Multiple sequence alignment - TraesCS3A01G323600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G323600 chr3A 100.000 2558 0 0 1 2558 568146294 568148851 0.000000e+00 4724.0
1 TraesCS3A01G323600 chr3A 100.000 2052 0 0 2897 4948 568149190 568151241 0.000000e+00 3790.0
2 TraesCS3A01G323600 chr3A 89.815 108 11 0 2897 3004 10621756 10621863 6.680000e-29 139.0
3 TraesCS3A01G323600 chr3D 97.708 1571 30 3 3378 4948 430148856 430150420 0.000000e+00 2697.0
4 TraesCS3A01G323600 chr3D 90.858 1586 94 26 519 2102 430146573 430148109 0.000000e+00 2078.0
5 TraesCS3A01G323600 chr3D 97.468 316 8 0 2897 3212 430148556 430148871 1.570000e-149 540.0
6 TraesCS3A01G323600 chr3D 96.753 308 7 1 2091 2398 430148149 430148453 1.230000e-140 510.0
7 TraesCS3A01G323600 chr3D 86.900 229 13 8 92 305 430145779 430146005 1.780000e-59 241.0
8 TraesCS3A01G323600 chr3D 89.529 191 14 2 3028 3212 570263842 570264032 2.300000e-58 237.0
9 TraesCS3A01G323600 chr3D 90.476 126 12 0 3451 3576 380274797 380274672 3.060000e-37 167.0
10 TraesCS3A01G323600 chr3D 90.741 108 10 0 2897 3004 208832993 208833100 1.440000e-30 145.0
11 TraesCS3A01G323600 chr3D 97.727 44 1 0 388 431 430146101 430146144 5.310000e-10 76.8
12 TraesCS3A01G323600 chr3B 87.413 2018 141 57 572 2550 562444067 562446010 0.000000e+00 2215.0
13 TraesCS3A01G323600 chr3B 95.529 850 33 5 3380 4227 562446480 562447326 0.000000e+00 1354.0
14 TraesCS3A01G323600 chr3B 86.984 630 49 15 4324 4948 562447470 562448071 0.000000e+00 678.0
15 TraesCS3A01G323600 chr3B 83.502 594 70 9 3380 3973 70005717 70006282 3.390000e-146 529.0
16 TraesCS3A01G323600 chr3B 95.639 321 9 2 2897 3212 562446173 562446493 1.230000e-140 510.0
17 TraesCS3A01G323600 chr3B 80.964 394 35 22 1 373 562443683 562444057 4.880000e-70 276.0
18 TraesCS3A01G323600 chr3B 90.244 123 12 0 3451 3573 47630287 47630409 1.430000e-35 161.0
19 TraesCS3A01G323600 chr3B 94.444 90 3 2 4248 4336 562447321 562447409 2.400000e-28 137.0
20 TraesCS3A01G323600 chr5A 99.425 174 0 1 3208 3381 336458847 336459019 1.030000e-81 315.0
21 TraesCS3A01G323600 chr5A 91.250 160 14 0 3028 3187 547799081 547798922 8.340000e-53 219.0
22 TraesCS3A01G323600 chr5A 90.244 123 12 0 3382 3504 547798902 547798780 1.430000e-35 161.0
23 TraesCS3A01G323600 chr4A 100.000 170 0 0 3212 3381 443844767 443844936 1.030000e-81 315.0
24 TraesCS3A01G323600 chr4A 90.164 122 12 0 3452 3573 17750096 17749975 5.130000e-35 159.0
25 TraesCS3A01G323600 chr5B 100.000 169 0 0 3213 3381 63845807 63845975 3.720000e-81 313.0
26 TraesCS3A01G323600 chr5B 90.164 122 12 0 3452 3573 78212458 78212579 5.130000e-35 159.0
27 TraesCS3A01G323600 chr4B 100.000 169 0 0 3213 3381 545868015 545868183 3.720000e-81 313.0
28 TraesCS3A01G323600 chr2A 100.000 169 0 0 3213 3381 569281855 569281687 3.720000e-81 313.0
29 TraesCS3A01G323600 chr2A 89.000 100 11 0 2908 3007 37027699 37027600 1.870000e-24 124.0
30 TraesCS3A01G323600 chr7B 98.295 176 3 0 3206 3381 446162688 446162513 4.810000e-80 309.0
31 TraesCS3A01G323600 chr7B 91.216 148 13 0 2926 3073 317764436 317764583 8.400000e-48 202.0
32 TraesCS3A01G323600 chr1B 98.844 173 1 1 3205 3377 26851040 26850869 1.730000e-79 307.0
33 TraesCS3A01G323600 chr1B 99.405 168 1 0 3214 3381 301282401 301282234 6.220000e-79 305.0
34 TraesCS3A01G323600 chr1B 89.873 158 16 0 3028 3185 27366759 27366916 2.340000e-48 204.0
35 TraesCS3A01G323600 chr1B 89.873 158 16 0 3028 3185 27395968 27396125 2.340000e-48 204.0
36 TraesCS3A01G323600 chr1B 90.000 120 12 0 3382 3501 27366937 27367056 6.630000e-34 156.0
37 TraesCS3A01G323600 chr1B 90.000 120 12 0 3382 3501 27396146 27396265 6.630000e-34 156.0
38 TraesCS3A01G323600 chr6A 99.401 167 1 0 3215 3381 502132840 502132674 2.240000e-78 303.0
39 TraesCS3A01G323600 chr6A 92.126 127 7 2 4677 4803 561962958 561963081 5.090000e-40 176.0
40 TraesCS3A01G323600 chr2D 88.325 197 17 2 3028 3218 578047344 578047148 1.070000e-56 231.0
41 TraesCS3A01G323600 chr2D 91.946 149 11 1 2926 3073 95199927 95199779 1.810000e-49 207.0
42 TraesCS3A01G323600 chr2D 86.614 127 15 2 3375 3501 489043148 489043272 6.680000e-29 139.0
43 TraesCS3A01G323600 chr1D 87.817 197 18 2 3028 3218 58111596 58111400 4.980000e-55 226.0
44 TraesCS3A01G323600 chr1D 90.511 137 8 3 4677 4811 51869543 51869410 5.090000e-40 176.0
45 TraesCS3A01G323600 chr1D 92.126 127 7 2 4677 4803 254437435 254437558 5.090000e-40 176.0
46 TraesCS3A01G323600 chr1D 90.000 120 12 0 3382 3501 314640491 314640610 6.630000e-34 156.0
47 TraesCS3A01G323600 chr1D 87.805 123 15 0 3382 3504 58111417 58111295 1.440000e-30 145.0
48 TraesCS3A01G323600 chr1A 93.103 145 9 1 3028 3172 565785830 565785687 1.400000e-50 211.0
49 TraesCS3A01G323600 chr1A 90.722 97 9 0 2908 3004 561617026 561617122 4.020000e-26 130.0
50 TraesCS3A01G323600 chr7D 90.511 137 8 3 4677 4811 231541296 231541163 5.090000e-40 176.0
51 TraesCS3A01G323600 chr7D 92.126 127 7 2 4677 4803 231596996 231597119 5.090000e-40 176.0
52 TraesCS3A01G323600 chr7D 92.126 127 7 2 4677 4803 231623304 231623427 5.090000e-40 176.0
53 TraesCS3A01G323600 chr7D 89.600 125 13 0 3452 3576 566799054 566798930 5.130000e-35 159.0
54 TraesCS3A01G323600 chr7D 89.189 111 12 0 2897 3007 513994067 513993957 6.680000e-29 139.0
55 TraesCS3A01G323600 chr4D 92.126 127 7 2 4677 4803 348382613 348382736 5.090000e-40 176.0
56 TraesCS3A01G323600 chr5D 90.164 122 12 0 3451 3572 484996383 484996262 5.130000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G323600 chr3A 568146294 568151241 4947 False 4257.000000 4724 100.000000 1 4948 2 chr3A.!!$F2 4947
1 TraesCS3A01G323600 chr3D 430145779 430150420 4641 False 1023.800000 2697 94.569000 92 4948 6 chr3D.!!$F3 4856
2 TraesCS3A01G323600 chr3B 562443683 562448071 4388 False 861.666667 2215 90.162167 1 4948 6 chr3B.!!$F3 4947
3 TraesCS3A01G323600 chr3B 70005717 70006282 565 False 529.000000 529 83.502000 3380 3973 1 chr3B.!!$F2 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 1119 0.108138 AGAATGGACACGCACTAGGC 60.108 55.000 0.0 0.0 39.9 3.93 F
741 1172 0.196118 TTCCCTTCTCCCTTCCACCT 59.804 55.000 0.0 0.0 0.0 4.00 F
1112 1546 0.391793 CCTCCGCCCTCTTTTCTGTC 60.392 60.000 0.0 0.0 0.0 3.51 F
2513 3024 1.072806 TGAAGATGCACAAGACAGCCT 59.927 47.619 0.0 0.0 0.0 4.58 F
3314 3826 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.0 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2379 2890 1.360852 TGAATGTGGCCCCCTTTATGT 59.639 47.619 0.00 0.00 0.00 2.29 R
2492 3003 2.089980 GGCTGTCTTGTGCATCTTCAT 58.910 47.619 0.00 0.00 0.00 2.57 R
2935 3446 1.348036 ACCAGGCCGGCTAAGATTATC 59.652 52.381 28.56 5.83 39.03 1.75 R
3364 3876 0.109412 GCTGTAAAGCTGCTGCCTTG 60.109 55.000 12.44 0.00 40.80 3.61 R
4390 4972 4.271049 CCATTTATCAGTTACAGCCGTCAG 59.729 45.833 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.142818 AGATTGAAATGGACGTCAACAAAA 57.857 33.333 18.91 4.66 36.62 2.44
43 44 6.208644 AGATTGAAATGGACGTCAACAAAAG 58.791 36.000 18.91 0.00 36.62 2.27
44 45 5.568685 TTGAAATGGACGTCAACAAAAGA 57.431 34.783 18.91 0.00 0.00 2.52
46 47 6.142818 TGAAATGGACGTCAACAAAAGATT 57.857 33.333 18.91 0.00 0.00 2.40
47 48 5.976534 TGAAATGGACGTCAACAAAAGATTG 59.023 36.000 18.91 0.00 42.46 2.67
54 55 4.440758 ACGTCAACAAAAGATTGAAATGCG 59.559 37.500 0.00 0.00 37.80 4.73
78 79 7.700656 GCGCTTTGGTGTCTTTATATTGTTATT 59.299 33.333 0.00 0.00 0.00 1.40
125 135 1.293179 GTGATGTTTTGCTGCCCCC 59.707 57.895 0.00 0.00 0.00 5.40
130 140 0.407528 TGTTTTGCTGCCCCCATCTA 59.592 50.000 0.00 0.00 0.00 1.98
222 232 1.595466 ATGTACGTAGCGGGAGAGAG 58.405 55.000 0.00 0.00 0.00 3.20
283 308 2.429236 AGTCAACGACTCTGCGCG 60.429 61.111 0.00 0.00 38.71 6.86
321 346 2.517450 CGAGCGCCAAATCGGAGAC 61.517 63.158 2.29 0.00 42.51 3.36
347 381 4.086547 GGGGAACGGGGTGTACGG 62.087 72.222 0.00 0.00 35.23 4.02
348 382 2.996734 GGGAACGGGGTGTACGGA 60.997 66.667 0.00 0.00 35.23 4.69
349 383 2.262603 GGAACGGGGTGTACGGAC 59.737 66.667 0.00 0.00 35.23 4.79
350 384 2.262603 GAACGGGGTGTACGGACC 59.737 66.667 0.00 0.00 35.23 4.46
431 505 2.398498 CTGCTCGTATTCGCAGCTTAT 58.602 47.619 13.85 0.00 45.90 1.73
432 506 2.797156 CTGCTCGTATTCGCAGCTTATT 59.203 45.455 13.85 0.00 45.90 1.40
433 507 3.194861 TGCTCGTATTCGCAGCTTATTT 58.805 40.909 13.85 0.00 39.25 1.40
435 509 3.363084 GCTCGTATTCGCAGCTTATTTCC 60.363 47.826 8.24 0.00 37.31 3.13
436 510 3.128349 TCGTATTCGCAGCTTATTTCCC 58.872 45.455 0.00 0.00 36.96 3.97
437 511 2.869801 CGTATTCGCAGCTTATTTCCCA 59.130 45.455 0.00 0.00 0.00 4.37
438 512 3.311322 CGTATTCGCAGCTTATTTCCCAA 59.689 43.478 0.00 0.00 0.00 4.12
439 513 4.552767 CGTATTCGCAGCTTATTTCCCAAG 60.553 45.833 0.00 0.00 0.00 3.61
440 514 1.750193 TCGCAGCTTATTTCCCAAGG 58.250 50.000 0.00 0.00 0.00 3.61
442 516 2.091541 CGCAGCTTATTTCCCAAGGAA 58.908 47.619 0.00 0.00 40.27 3.36
451 525 1.989706 TTCCCAAGGAAAAACTCCCG 58.010 50.000 0.00 0.00 46.81 5.14
453 527 1.579429 CCAAGGAAAAACTCCCGCG 59.421 57.895 0.00 0.00 46.81 6.46
454 528 1.579429 CAAGGAAAAACTCCCGCGG 59.421 57.895 21.04 21.04 46.81 6.46
456 530 2.969300 AAGGAAAAACTCCCGCGGCA 62.969 55.000 22.85 2.88 46.81 5.69
457 531 2.561373 GAAAAACTCCCGCGGCAG 59.439 61.111 22.85 19.58 0.00 4.85
458 532 2.978018 GAAAAACTCCCGCGGCAGG 61.978 63.158 22.49 14.40 0.00 4.85
459 533 3.485346 AAAAACTCCCGCGGCAGGA 62.485 57.895 22.49 11.89 0.00 3.86
460 534 2.969300 AAAAACTCCCGCGGCAGGAA 62.969 55.000 22.49 1.54 31.49 3.36
461 535 2.969300 AAAACTCCCGCGGCAGGAAA 62.969 55.000 22.49 0.00 31.49 3.13
462 536 2.969300 AAACTCCCGCGGCAGGAAAA 62.969 55.000 22.49 0.00 31.49 2.29
463 537 2.671619 CTCCCGCGGCAGGAAAAA 60.672 61.111 22.85 0.00 31.49 1.94
464 538 2.671619 TCCCGCGGCAGGAAAAAG 60.672 61.111 22.85 2.11 0.00 2.27
465 539 3.747976 CCCGCGGCAGGAAAAAGG 61.748 66.667 22.85 0.00 0.00 3.11
467 541 3.747976 CGCGGCAGGAAAAAGGGG 61.748 66.667 0.00 0.00 0.00 4.79
468 542 2.282887 GCGGCAGGAAAAAGGGGA 60.283 61.111 0.00 0.00 0.00 4.81
470 544 1.378762 CGGCAGGAAAAAGGGGAGA 59.621 57.895 0.00 0.00 0.00 3.71
471 545 0.960861 CGGCAGGAAAAAGGGGAGAC 60.961 60.000 0.00 0.00 0.00 3.36
472 546 0.960861 GGCAGGAAAAAGGGGAGACG 60.961 60.000 0.00 0.00 0.00 4.18
473 547 0.250770 GCAGGAAAAAGGGGAGACGT 60.251 55.000 0.00 0.00 0.00 4.34
474 548 1.818131 GCAGGAAAAAGGGGAGACGTT 60.818 52.381 0.00 0.00 0.00 3.99
475 549 2.152016 CAGGAAAAAGGGGAGACGTTC 58.848 52.381 0.00 0.00 0.00 3.95
476 550 1.154197 GGAAAAAGGGGAGACGTTCG 58.846 55.000 0.00 0.00 0.00 3.95
480 554 0.535797 AAAGGGGAGACGTTCGATCC 59.464 55.000 0.00 6.02 0.00 3.36
481 555 0.324460 AAGGGGAGACGTTCGATCCT 60.324 55.000 15.86 2.37 33.40 3.24
492 566 4.271816 CGATCCTCTCGGGGCACG 62.272 72.222 0.68 0.68 43.82 5.34
495 569 3.758133 ATCCTCTCGGGGCACGGAT 62.758 63.158 10.28 0.04 44.45 4.18
496 570 2.367586 ATCCTCTCGGGGCACGGATA 62.368 60.000 10.28 0.00 44.45 2.59
514 588 2.805353 CGAGCGGAGTCGTGTTGG 60.805 66.667 0.00 0.00 38.89 3.77
516 590 4.681978 AGCGGAGTCGTGTTGGCC 62.682 66.667 0.00 0.00 38.89 5.36
517 591 4.980805 GCGGAGTCGTGTTGGCCA 62.981 66.667 0.00 0.00 38.89 5.36
530 945 0.112412 TTGGCCACTTTTCCCCTCTC 59.888 55.000 3.88 0.00 0.00 3.20
570 985 1.242076 CCATGCATCCGATTCCCTTC 58.758 55.000 0.00 0.00 0.00 3.46
571 986 1.242076 CATGCATCCGATTCCCTTCC 58.758 55.000 0.00 0.00 0.00 3.46
572 987 0.111253 ATGCATCCGATTCCCTTCCC 59.889 55.000 0.00 0.00 0.00 3.97
573 988 0.988145 TGCATCCGATTCCCTTCCCT 60.988 55.000 0.00 0.00 0.00 4.20
574 989 0.183731 GCATCCGATTCCCTTCCCTT 59.816 55.000 0.00 0.00 0.00 3.95
575 990 1.815795 GCATCCGATTCCCTTCCCTTC 60.816 57.143 0.00 0.00 0.00 3.46
580 995 1.408822 CGATTCCCTTCCCTTCCCTTG 60.409 57.143 0.00 0.00 0.00 3.61
616 1031 2.281276 GCCGACCCAAACGAACCT 60.281 61.111 0.00 0.00 0.00 3.50
637 1052 2.522638 CGTTGGGGCGCGAGATTAC 61.523 63.158 12.10 0.00 0.00 1.89
657 1072 1.106944 ACAAAGCAAACCCGGACCAG 61.107 55.000 0.73 0.00 0.00 4.00
659 1074 0.537371 AAAGCAAACCCGGACCAGAG 60.537 55.000 0.73 0.00 0.00 3.35
660 1075 3.056328 GCAAACCCGGACCAGAGC 61.056 66.667 0.73 0.00 0.00 4.09
661 1076 2.429930 CAAACCCGGACCAGAGCA 59.570 61.111 0.73 0.00 0.00 4.26
662 1077 1.966451 CAAACCCGGACCAGAGCAC 60.966 63.158 0.73 0.00 0.00 4.40
688 1119 0.108138 AGAATGGACACGCACTAGGC 60.108 55.000 0.00 0.00 39.90 3.93
732 1163 1.282653 CCCCTTCCCTTCCCTTCTCC 61.283 65.000 0.00 0.00 0.00 3.71
741 1172 0.196118 TTCCCTTCTCCCTTCCACCT 59.804 55.000 0.00 0.00 0.00 4.00
743 1174 1.301293 CCTTCTCCCTTCCACCTGC 59.699 63.158 0.00 0.00 0.00 4.85
846 1278 2.371259 GCCTCTCCTCCCACCTTCC 61.371 68.421 0.00 0.00 0.00 3.46
859 1291 4.162690 CTTCCTCCGGCCCCTTCG 62.163 72.222 0.00 0.00 0.00 3.79
882 1314 1.821332 CTCCAGCCAAGCCCGATTC 60.821 63.158 0.00 0.00 0.00 2.52
888 1320 1.147153 CCAAGCCCGATTCCTCTCC 59.853 63.158 0.00 0.00 0.00 3.71
890 1322 2.073101 AAGCCCGATTCCTCTCCCC 61.073 63.158 0.00 0.00 0.00 4.81
902 1334 2.108278 CTCTCCCCGGTTTCCGTTGT 62.108 60.000 0.00 0.00 46.80 3.32
905 1337 2.593436 CCCGGTTTCCGTTGTGCT 60.593 61.111 0.00 0.00 46.80 4.40
907 1339 2.184167 CCGGTTTCCGTTGTGCTGT 61.184 57.895 7.40 0.00 46.80 4.40
971 1404 3.722295 CGGCGGCGTTGTTGTCAT 61.722 61.111 24.74 0.00 0.00 3.06
972 1405 2.126888 GGCGGCGTTGTTGTCATG 60.127 61.111 9.37 0.00 0.00 3.07
973 1406 2.637025 GCGGCGTTGTTGTCATGT 59.363 55.556 9.37 0.00 0.00 3.21
974 1407 1.008995 GCGGCGTTGTTGTCATGTT 60.009 52.632 9.37 0.00 0.00 2.71
977 1410 1.268285 CGGCGTTGTTGTCATGTTTGA 60.268 47.619 0.00 0.00 0.00 2.69
989 1422 4.701171 TGTCATGTTTGATTGATGCTGCTA 59.299 37.500 0.00 0.00 33.56 3.49
990 1423 5.358725 TGTCATGTTTGATTGATGCTGCTAT 59.641 36.000 0.00 0.00 33.56 2.97
991 1424 6.127563 TGTCATGTTTGATTGATGCTGCTATT 60.128 34.615 0.00 0.00 33.56 1.73
992 1425 7.067251 TGTCATGTTTGATTGATGCTGCTATTA 59.933 33.333 0.00 0.00 33.56 0.98
993 1426 8.080417 GTCATGTTTGATTGATGCTGCTATTAT 58.920 33.333 0.00 0.00 33.56 1.28
995 1428 8.912658 CATGTTTGATTGATGCTGCTATTATTC 58.087 33.333 0.00 0.00 0.00 1.75
996 1429 8.229253 TGTTTGATTGATGCTGCTATTATTCT 57.771 30.769 0.00 0.00 0.00 2.40
1108 1542 2.272471 CCCCTCCGCCCTCTTTTC 59.728 66.667 0.00 0.00 0.00 2.29
1112 1546 0.391793 CCTCCGCCCTCTTTTCTGTC 60.392 60.000 0.00 0.00 0.00 3.51
1178 1612 4.030216 TGGAATCAGCTCATGTACACCTA 58.970 43.478 0.00 0.00 0.00 3.08
1324 1761 1.727467 GCGTCATGGGTTGCCATAC 59.273 57.895 0.00 0.00 0.00 2.39
1380 1817 7.622893 ATTCTCCTTATCTCTCAAGCAAAAC 57.377 36.000 0.00 0.00 0.00 2.43
1555 1992 6.767524 TGGGCATCTGATTTTACGTTTTAT 57.232 33.333 0.00 0.00 0.00 1.40
1556 1993 7.867305 TGGGCATCTGATTTTACGTTTTATA 57.133 32.000 0.00 0.00 0.00 0.98
1597 2040 6.454795 TGCTCTTCTGTTTGTTTCTTTGTTT 58.545 32.000 0.00 0.00 0.00 2.83
1598 2041 6.365789 TGCTCTTCTGTTTGTTTCTTTGTTTG 59.634 34.615 0.00 0.00 0.00 2.93
1599 2042 6.366061 GCTCTTCTGTTTGTTTCTTTGTTTGT 59.634 34.615 0.00 0.00 0.00 2.83
1600 2043 7.095649 GCTCTTCTGTTTGTTTCTTTGTTTGTT 60.096 33.333 0.00 0.00 0.00 2.83
1601 2044 9.405587 CTCTTCTGTTTGTTTCTTTGTTTGTTA 57.594 29.630 0.00 0.00 0.00 2.41
1602 2045 9.921637 TCTTCTGTTTGTTTCTTTGTTTGTTAT 57.078 25.926 0.00 0.00 0.00 1.89
1713 2156 5.984695 ATAGCCACGAGAATATTAGCTCA 57.015 39.130 0.00 0.00 0.00 4.26
1869 2312 7.289310 TGAAATGGATGCTCAATCAGGTAATA 58.711 34.615 0.00 0.00 36.98 0.98
1885 2331 8.588290 TCAGGTAATATTTTGCCATTAGTTGT 57.412 30.769 5.86 0.00 39.87 3.32
1980 2429 7.013529 AGAACGTTATTTTGTCGCTGAATTAC 58.986 34.615 0.00 0.00 0.00 1.89
2004 2453 4.503910 TGTTCTGTAAATAGCTGCGTGAT 58.496 39.130 0.00 0.00 0.00 3.06
2034 2483 1.598701 CTGCTGCCCTTAACCTTGGC 61.599 60.000 0.00 0.00 45.56 4.52
2093 2594 3.679025 GCACTGCAGCACTATCTGATATC 59.321 47.826 15.27 0.00 36.19 1.63
2105 2606 8.138074 GCACTATCTGATATCTGTGAAGTAACA 58.862 37.037 15.66 0.00 0.00 2.41
2194 2705 2.636768 GCTTGCCAGAAAGCGTTAAT 57.363 45.000 0.00 0.00 42.86 1.40
2235 2746 6.885376 TGGAAATAACCTGCGAAAATACCTTA 59.115 34.615 0.00 0.00 0.00 2.69
2236 2747 7.066525 TGGAAATAACCTGCGAAAATACCTTAG 59.933 37.037 0.00 0.00 0.00 2.18
2237 2748 7.066645 GGAAATAACCTGCGAAAATACCTTAGT 59.933 37.037 0.00 0.00 0.00 2.24
2398 2909 2.159179 ACATAAAGGGGGCCACATTC 57.841 50.000 4.81 0.00 0.00 2.67
2399 2910 1.360852 ACATAAAGGGGGCCACATTCA 59.639 47.619 4.81 0.00 0.00 2.57
2400 2911 2.023113 ACATAAAGGGGGCCACATTCAT 60.023 45.455 4.81 0.00 0.00 2.57
2428 2939 5.899631 TTACCAAAAACTGTAGAGGAGGT 57.100 39.130 0.00 0.00 0.00 3.85
2490 3001 9.663904 CAAAATGTAAGCATGTAAGCGTTATAT 57.336 29.630 0.00 0.00 40.15 0.86
2492 3003 8.601845 AATGTAAGCATGTAAGCGTTATATGA 57.398 30.769 14.16 0.37 37.02 2.15
2506 3017 6.073385 AGCGTTATATGATGAAGATGCACAAG 60.073 38.462 0.00 0.00 0.00 3.16
2508 3019 7.286508 CGTTATATGATGAAGATGCACAAGAC 58.713 38.462 0.00 0.00 0.00 3.01
2513 3024 1.072806 TGAAGATGCACAAGACAGCCT 59.927 47.619 0.00 0.00 0.00 4.58
2526 3037 4.899352 AGACAGCCTTCACATAAGAAGT 57.101 40.909 0.00 0.00 42.68 3.01
2528 3039 6.360370 AGACAGCCTTCACATAAGAAGTTA 57.640 37.500 0.00 0.00 42.68 2.24
2550 3061 2.704572 ACACTAGAGGCAAGAACATGC 58.295 47.619 0.00 0.00 45.67 4.06
2552 3063 3.244700 ACACTAGAGGCAAGAACATGCTT 60.245 43.478 0.00 0.00 45.68 3.91
2554 3065 4.006319 ACTAGAGGCAAGAACATGCTTTC 58.994 43.478 0.00 0.00 45.68 2.62
2556 3067 3.494332 AGAGGCAAGAACATGCTTTCTT 58.506 40.909 5.67 5.67 44.98 2.52
2557 3068 3.893813 AGAGGCAAGAACATGCTTTCTTT 59.106 39.130 8.24 0.00 42.09 2.52
2935 3446 1.376543 AATGTGCTGCATCTCTTCCG 58.623 50.000 5.27 0.00 36.67 4.30
3203 3715 3.366052 TTTCCCCTTGATCTTACAGCC 57.634 47.619 0.00 0.00 0.00 4.85
3204 3716 1.213296 TCCCCTTGATCTTACAGCCC 58.787 55.000 0.00 0.00 0.00 5.19
3205 3717 0.918983 CCCCTTGATCTTACAGCCCA 59.081 55.000 0.00 0.00 0.00 5.36
3206 3718 1.408822 CCCCTTGATCTTACAGCCCAC 60.409 57.143 0.00 0.00 0.00 4.61
3207 3719 1.281867 CCCTTGATCTTACAGCCCACA 59.718 52.381 0.00 0.00 0.00 4.17
3208 3720 2.636830 CCTTGATCTTACAGCCCACAG 58.363 52.381 0.00 0.00 0.00 3.66
3209 3721 2.026822 CCTTGATCTTACAGCCCACAGT 60.027 50.000 0.00 0.00 0.00 3.55
3210 3722 2.768253 TGATCTTACAGCCCACAGTG 57.232 50.000 0.00 0.00 0.00 3.66
3211 3723 1.977854 TGATCTTACAGCCCACAGTGT 59.022 47.619 0.00 0.00 0.00 3.55
3212 3724 3.169908 TGATCTTACAGCCCACAGTGTA 58.830 45.455 0.00 0.00 0.00 2.90
3213 3725 3.580895 TGATCTTACAGCCCACAGTGTAA 59.419 43.478 0.00 0.00 36.91 2.41
3214 3726 4.041075 TGATCTTACAGCCCACAGTGTAAA 59.959 41.667 0.00 0.00 38.38 2.01
3215 3727 4.425180 TCTTACAGCCCACAGTGTAAAA 57.575 40.909 0.00 0.00 38.38 1.52
3216 3728 4.783055 TCTTACAGCCCACAGTGTAAAAA 58.217 39.130 0.00 0.00 38.38 1.94
3243 3755 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
3244 3756 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
3245 3757 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
3246 3758 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
3247 3759 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
3253 3765 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3254 3766 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3255 3767 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3256 3768 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3259 3771 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3271 3783 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
3272 3784 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
3273 3785 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
3274 3786 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3275 3787 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3276 3788 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3277 3789 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3278 3790 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3279 3791 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3280 3792 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3281 3793 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
3282 3794 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
3283 3795 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3284 3796 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3285 3797 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3286 3798 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3287 3799 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3288 3800 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3289 3801 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3299 3811 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
3300 3812 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
3301 3813 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
3302 3814 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
3303 3815 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
3304 3816 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3305 3817 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3306 3818 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3307 3819 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
3308 3820 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
3309 3821 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
3310 3822 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
3311 3823 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
3312 3824 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
3313 3825 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
3314 3826 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3315 3827 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3316 3828 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3317 3829 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3318 3830 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3319 3831 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3320 3832 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3321 3833 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3322 3834 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3323 3835 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3324 3836 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3325 3837 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3337 3849 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3338 3850 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3339 3851 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3340 3852 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3341 3853 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3342 3854 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3343 3855 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3344 3856 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3345 3857 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3346 3858 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3347 3859 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3348 3860 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3349 3861 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
3350 3862 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
3351 3863 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
3352 3864 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
3353 3865 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
3354 3866 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
3355 3867 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
3356 3868 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
3357 3869 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
3358 3870 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
3370 3882 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3371 3883 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3372 3884 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3373 3885 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3374 3886 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3375 3887 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3376 3888 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3377 3889 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3378 3890 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3603 4115 5.437289 AATCGTTGATTGCTGAACTGAAA 57.563 34.783 0.00 0.00 30.42 2.69
3663 4175 5.263968 TCAAGAAGATCCGGAGTATTGTC 57.736 43.478 11.34 0.43 0.00 3.18
3716 4228 2.617308 CTGTGAGCCCTCTTGCATTATG 59.383 50.000 0.00 0.00 0.00 1.90
3785 4297 7.945134 TCTATTTTGCTTTCTTTCAGAAGCTT 58.055 30.769 0.00 0.00 35.37 3.74
4390 4972 5.986135 ACGATGTTTGGATAGCTGTAGATTC 59.014 40.000 0.00 0.00 0.00 2.52
4505 5087 8.991783 AGATGTTCATGATTTCAGGACATAAT 57.008 30.769 6.87 0.00 36.31 1.28
4688 5270 8.506168 TTGTTTGCGAAATTAGAATAGGAGAT 57.494 30.769 0.00 0.00 0.00 2.75
4689 5271 9.607988 TTGTTTGCGAAATTAGAATAGGAGATA 57.392 29.630 0.00 0.00 0.00 1.98
4690 5272 9.042008 TGTTTGCGAAATTAGAATAGGAGATAC 57.958 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.869315 TTTGTTGACGTCCATTTCAATCTA 57.131 33.333 14.12 0.00 34.34 1.98
19 20 5.766150 TTTGTTGACGTCCATTTCAATCT 57.234 34.783 14.12 0.00 34.34 2.40
30 31 5.386323 CGCATTTCAATCTTTTGTTGACGTC 60.386 40.000 9.11 9.11 35.47 4.34
32 33 4.661402 GCGCATTTCAATCTTTTGTTGACG 60.661 41.667 0.30 0.00 35.47 4.35
35 36 4.977741 AGCGCATTTCAATCTTTTGTTG 57.022 36.364 11.47 0.00 34.32 3.33
38 39 4.211794 ACCAAAGCGCATTTCAATCTTTTG 59.788 37.500 11.47 7.31 0.00 2.44
42 43 2.297033 ACACCAAAGCGCATTTCAATCT 59.703 40.909 11.47 0.00 0.00 2.40
43 44 2.663119 GACACCAAAGCGCATTTCAATC 59.337 45.455 11.47 0.00 0.00 2.67
44 45 2.297033 AGACACCAAAGCGCATTTCAAT 59.703 40.909 11.47 0.00 0.00 2.57
46 47 1.317613 AGACACCAAAGCGCATTTCA 58.682 45.000 11.47 0.00 0.00 2.69
47 48 2.422276 AAGACACCAAAGCGCATTTC 57.578 45.000 11.47 0.00 0.00 2.17
83 84 6.096001 ACGTAGGAGAAAACGATGGTAATACT 59.904 38.462 1.45 0.00 41.55 2.12
84 85 6.197842 CACGTAGGAGAAAACGATGGTAATAC 59.802 42.308 1.45 0.00 41.55 1.89
85 86 6.095300 TCACGTAGGAGAAAACGATGGTAATA 59.905 38.462 1.45 0.00 41.55 0.98
88 98 3.758023 TCACGTAGGAGAAAACGATGGTA 59.242 43.478 1.45 0.00 41.55 3.25
105 115 1.659794 GGGCAGCAAAACATCACGT 59.340 52.632 0.00 0.00 0.00 4.49
125 135 3.637229 AGAATAGTCCACGGTGGTAGATG 59.363 47.826 25.53 0.20 39.03 2.90
130 140 3.782656 AAAAGAATAGTCCACGGTGGT 57.217 42.857 25.53 11.08 39.03 4.16
229 239 0.467474 CCCTATTTTTCTCCCCCGCC 60.467 60.000 0.00 0.00 0.00 6.13
231 241 1.409661 CCACCCTATTTTTCTCCCCCG 60.410 57.143 0.00 0.00 0.00 5.73
232 242 1.063190 CCCACCCTATTTTTCTCCCCC 60.063 57.143 0.00 0.00 0.00 5.40
239 264 1.254975 GCACGCCCCACCCTATTTTT 61.255 55.000 0.00 0.00 0.00 1.94
383 446 4.742201 TGAAGCAGCCCGTCTCGC 62.742 66.667 0.00 0.00 0.00 5.03
384 447 2.507992 CTGAAGCAGCCCGTCTCG 60.508 66.667 0.00 0.00 0.00 4.04
432 506 1.989706 CGGGAGTTTTTCCTTGGGAA 58.010 50.000 0.00 0.00 45.98 3.97
433 507 0.538746 GCGGGAGTTTTTCCTTGGGA 60.539 55.000 0.00 0.00 45.98 4.37
435 509 1.579429 CGCGGGAGTTTTTCCTTGG 59.421 57.895 0.00 0.00 45.98 3.61
436 510 1.579429 CCGCGGGAGTTTTTCCTTG 59.421 57.895 20.10 0.00 45.98 3.61
437 511 2.265904 GCCGCGGGAGTTTTTCCTT 61.266 57.895 29.38 0.00 45.98 3.36
438 512 2.671963 GCCGCGGGAGTTTTTCCT 60.672 61.111 29.38 0.00 45.98 3.36
439 513 2.978018 CTGCCGCGGGAGTTTTTCC 61.978 63.158 35.67 12.51 46.00 3.13
440 514 2.561373 CTGCCGCGGGAGTTTTTC 59.439 61.111 35.67 13.27 0.00 2.29
442 516 2.969300 TTTCCTGCCGCGGGAGTTTT 62.969 55.000 39.25 0.00 40.34 2.43
443 517 2.969300 TTTTCCTGCCGCGGGAGTTT 62.969 55.000 39.25 0.00 40.34 2.66
444 518 2.969300 TTTTTCCTGCCGCGGGAGTT 62.969 55.000 39.25 0.00 40.34 3.01
445 519 3.485346 TTTTTCCTGCCGCGGGAGT 62.485 57.895 39.25 0.00 40.34 3.85
446 520 2.671619 TTTTTCCTGCCGCGGGAG 60.672 61.111 36.86 36.86 40.34 4.30
448 522 3.747976 CCTTTTTCCTGCCGCGGG 61.748 66.667 29.38 12.53 0.00 6.13
451 525 2.282887 TCCCCTTTTTCCTGCCGC 60.283 61.111 0.00 0.00 0.00 6.53
453 527 0.960861 CGTCTCCCCTTTTTCCTGCC 60.961 60.000 0.00 0.00 0.00 4.85
454 528 0.250770 ACGTCTCCCCTTTTTCCTGC 60.251 55.000 0.00 0.00 0.00 4.85
456 530 1.270678 CGAACGTCTCCCCTTTTTCCT 60.271 52.381 0.00 0.00 0.00 3.36
457 531 1.154197 CGAACGTCTCCCCTTTTTCC 58.846 55.000 0.00 0.00 0.00 3.13
458 532 2.159327 TCGAACGTCTCCCCTTTTTC 57.841 50.000 0.00 0.00 0.00 2.29
459 533 2.614734 GGATCGAACGTCTCCCCTTTTT 60.615 50.000 0.00 0.00 0.00 1.94
460 534 1.066358 GGATCGAACGTCTCCCCTTTT 60.066 52.381 0.00 0.00 0.00 2.27
461 535 0.535797 GGATCGAACGTCTCCCCTTT 59.464 55.000 0.00 0.00 0.00 3.11
462 536 0.324460 AGGATCGAACGTCTCCCCTT 60.324 55.000 12.16 0.00 0.00 3.95
463 537 0.752376 GAGGATCGAACGTCTCCCCT 60.752 60.000 7.99 0.00 0.00 4.79
464 538 0.752376 AGAGGATCGAACGTCTCCCC 60.752 60.000 11.59 0.00 42.67 4.81
465 539 0.664224 GAGAGGATCGAACGTCTCCC 59.336 60.000 26.09 10.17 42.36 4.30
480 554 2.728817 GTATCCGTGCCCCGAGAG 59.271 66.667 0.00 0.00 39.56 3.20
481 555 3.214123 CGTATCCGTGCCCCGAGA 61.214 66.667 0.00 0.00 39.56 4.04
489 563 1.009900 GACTCCGCTCGTATCCGTG 60.010 63.158 0.00 0.00 35.01 4.94
490 564 2.532256 CGACTCCGCTCGTATCCGT 61.532 63.158 0.00 0.00 35.01 4.69
491 565 2.248724 CGACTCCGCTCGTATCCG 59.751 66.667 0.00 0.00 0.00 4.18
492 566 1.009900 CACGACTCCGCTCGTATCC 60.010 63.158 0.00 0.00 45.09 2.59
495 569 1.208358 CAACACGACTCCGCTCGTA 59.792 57.895 0.00 0.00 45.09 3.43
500 574 4.980805 TGGCCAACACGACTCCGC 62.981 66.667 0.61 0.00 39.95 5.54
501 575 3.041940 GTGGCCAACACGACTCCG 61.042 66.667 7.24 0.00 40.85 4.63
509 583 0.469144 GAGGGGAAAAGTGGCCAACA 60.469 55.000 7.24 0.00 0.00 3.33
510 584 0.178961 AGAGGGGAAAAGTGGCCAAC 60.179 55.000 7.24 1.26 0.00 3.77
511 585 0.112412 GAGAGGGGAAAAGTGGCCAA 59.888 55.000 7.24 0.00 0.00 4.52
512 586 1.767692 GAGAGGGGAAAAGTGGCCA 59.232 57.895 0.00 0.00 0.00 5.36
514 588 0.034960 GAGGAGAGGGGAAAAGTGGC 60.035 60.000 0.00 0.00 0.00 5.01
516 590 0.250513 CCGAGGAGAGGGGAAAAGTG 59.749 60.000 0.00 0.00 0.00 3.16
517 591 0.178900 ACCGAGGAGAGGGGAAAAGT 60.179 55.000 0.00 0.00 0.00 2.66
530 945 1.446272 GGTGAGAAGCGAACCGAGG 60.446 63.158 0.00 0.00 0.00 4.63
570 985 4.115199 CCTCGGGCAAGGGAAGGG 62.115 72.222 0.00 0.00 32.35 3.95
637 1052 1.362355 GGTCCGGGTTTGCTTTGTG 59.638 57.895 0.00 0.00 0.00 3.33
657 1072 0.038166 TCCATTCTGGGGTTGTGCTC 59.962 55.000 0.00 0.00 38.32 4.26
659 1074 0.539438 TGTCCATTCTGGGGTTGTGC 60.539 55.000 0.00 0.00 38.32 4.57
660 1075 1.247567 GTGTCCATTCTGGGGTTGTG 58.752 55.000 0.00 0.00 38.32 3.33
661 1076 0.250727 CGTGTCCATTCTGGGGTTGT 60.251 55.000 0.00 0.00 38.32 3.32
662 1077 1.586154 GCGTGTCCATTCTGGGGTTG 61.586 60.000 0.00 0.00 38.32 3.77
705 1136 3.945064 AAGGGAAGGGGACGAGGGG 62.945 68.421 0.00 0.00 0.00 4.79
706 1137 2.285442 AAGGGAAGGGGACGAGGG 60.285 66.667 0.00 0.00 0.00 4.30
707 1138 2.368011 GGAAGGGAAGGGGACGAGG 61.368 68.421 0.00 0.00 0.00 4.63
708 1139 2.368011 GGGAAGGGAAGGGGACGAG 61.368 68.421 0.00 0.00 0.00 4.18
709 1140 2.285144 GGGAAGGGAAGGGGACGA 60.285 66.667 0.00 0.00 0.00 4.20
710 1141 1.911702 GAAGGGAAGGGAAGGGGACG 61.912 65.000 0.00 0.00 0.00 4.79
711 1142 0.550393 AGAAGGGAAGGGAAGGGGAC 60.550 60.000 0.00 0.00 0.00 4.46
712 1143 0.253207 GAGAAGGGAAGGGAAGGGGA 60.253 60.000 0.00 0.00 0.00 4.81
713 1144 1.282653 GGAGAAGGGAAGGGAAGGGG 61.283 65.000 0.00 0.00 0.00 4.79
714 1145 1.282653 GGGAGAAGGGAAGGGAAGGG 61.283 65.000 0.00 0.00 0.00 3.95
715 1146 0.253394 AGGGAGAAGGGAAGGGAAGG 60.253 60.000 0.00 0.00 0.00 3.46
716 1147 1.562008 GAAGGGAGAAGGGAAGGGAAG 59.438 57.143 0.00 0.00 0.00 3.46
717 1148 1.670059 GAAGGGAGAAGGGAAGGGAA 58.330 55.000 0.00 0.00 0.00 3.97
718 1149 0.253207 GGAAGGGAGAAGGGAAGGGA 60.253 60.000 0.00 0.00 0.00 4.20
719 1150 0.550147 TGGAAGGGAGAAGGGAAGGG 60.550 60.000 0.00 0.00 0.00 3.95
720 1151 0.621082 GTGGAAGGGAGAAGGGAAGG 59.379 60.000 0.00 0.00 0.00 3.46
798 1229 2.829592 GGCGGGTTATGAGGAGGG 59.170 66.667 0.00 0.00 0.00 4.30
902 1334 2.281484 GGCGGAGTTTCCACAGCA 60.281 61.111 0.00 0.00 35.91 4.41
905 1337 0.400213 ATCTTGGCGGAGTTTCCACA 59.600 50.000 0.00 0.00 35.91 4.17
907 1339 1.533625 CAATCTTGGCGGAGTTTCCA 58.466 50.000 0.00 0.00 35.91 3.53
960 1393 5.387649 GCATCAATCAAACATGACAACAACG 60.388 40.000 0.00 0.00 0.00 4.10
966 1399 3.508402 AGCAGCATCAATCAAACATGACA 59.492 39.130 0.00 0.00 0.00 3.58
967 1400 4.106029 AGCAGCATCAATCAAACATGAC 57.894 40.909 0.00 0.00 0.00 3.06
968 1401 6.459670 AATAGCAGCATCAATCAAACATGA 57.540 33.333 0.00 0.00 0.00 3.07
969 1402 8.812147 AATAATAGCAGCATCAATCAAACATG 57.188 30.769 0.00 0.00 0.00 3.21
970 1403 8.857098 AGAATAATAGCAGCATCAATCAAACAT 58.143 29.630 0.00 0.00 0.00 2.71
971 1404 8.229253 AGAATAATAGCAGCATCAATCAAACA 57.771 30.769 0.00 0.00 0.00 2.83
972 1405 9.178427 GAAGAATAATAGCAGCATCAATCAAAC 57.822 33.333 0.00 0.00 0.00 2.93
973 1406 8.071967 CGAAGAATAATAGCAGCATCAATCAAA 58.928 33.333 0.00 0.00 0.00 2.69
974 1407 7.442062 TCGAAGAATAATAGCAGCATCAATCAA 59.558 33.333 0.00 0.00 0.00 2.57
977 1410 7.148289 CCATCGAAGAATAATAGCAGCATCAAT 60.148 37.037 0.00 0.00 43.58 2.57
989 1422 3.327439 ACCCCCTCCATCGAAGAATAAT 58.673 45.455 0.00 0.00 43.58 1.28
990 1423 2.771688 ACCCCCTCCATCGAAGAATAA 58.228 47.619 0.00 0.00 43.58 1.40
991 1424 2.489528 ACCCCCTCCATCGAAGAATA 57.510 50.000 0.00 0.00 43.58 1.75
992 1425 2.330216 CTACCCCCTCCATCGAAGAAT 58.670 52.381 0.00 0.00 43.58 2.40
993 1426 1.691482 CCTACCCCCTCCATCGAAGAA 60.691 57.143 0.00 0.00 43.58 2.52
995 1428 1.122019 CCCTACCCCCTCCATCGAAG 61.122 65.000 0.00 0.00 0.00 3.79
996 1429 1.074775 CCCTACCCCCTCCATCGAA 60.075 63.158 0.00 0.00 0.00 3.71
1098 1532 2.262423 ACTGTGACAGAAAAGAGGGC 57.738 50.000 20.97 0.00 35.18 5.19
1101 1535 7.721286 AAACAGATACTGTGACAGAAAAGAG 57.279 36.000 20.97 6.85 44.62 2.85
1102 1536 8.397906 CAAAAACAGATACTGTGACAGAAAAGA 58.602 33.333 20.97 0.00 44.62 2.52
1103 1537 8.184192 ACAAAAACAGATACTGTGACAGAAAAG 58.816 33.333 20.97 7.36 44.62 2.27
1108 1542 7.946655 TCTACAAAAACAGATACTGTGACAG 57.053 36.000 11.70 11.70 44.62 3.51
1112 1546 9.385902 CAACAATCTACAAAAACAGATACTGTG 57.614 33.333 5.17 0.00 44.62 3.66
1229 1666 3.695830 AGAGTTAATGGCAGGAAACGA 57.304 42.857 0.00 0.00 0.00 3.85
1380 1817 4.473520 AGCCCGAACAGCATCCCG 62.474 66.667 0.00 0.00 0.00 5.14
1458 1895 0.953003 CGTAAGGGATCTCGGTCTCC 59.047 60.000 0.00 0.00 0.00 3.71
1555 1992 2.637872 AGCAAGTTACTCACCAGCCTTA 59.362 45.455 0.00 0.00 0.00 2.69
1556 1993 1.421646 AGCAAGTTACTCACCAGCCTT 59.578 47.619 0.00 0.00 0.00 4.35
1597 2040 5.651576 TGCATGCACATTCTTTCCTATAACA 59.348 36.000 18.46 0.00 0.00 2.41
1598 2041 5.973565 GTGCATGCACATTCTTTCCTATAAC 59.026 40.000 39.12 11.21 45.53 1.89
1599 2042 6.135290 GTGCATGCACATTCTTTCCTATAA 57.865 37.500 39.12 1.92 45.53 0.98
1600 2043 5.756195 GTGCATGCACATTCTTTCCTATA 57.244 39.130 39.12 2.34 45.53 1.31
1601 2044 4.644103 GTGCATGCACATTCTTTCCTAT 57.356 40.909 39.12 0.00 45.53 2.57
1869 2312 8.421002 AGAACAGTAAACAACTAATGGCAAAAT 58.579 29.630 0.00 0.00 35.76 1.82
1883 2329 7.784037 TGGAGTAACTAACAGAACAGTAAACA 58.216 34.615 0.00 0.00 0.00 2.83
1884 2330 8.828688 ATGGAGTAACTAACAGAACAGTAAAC 57.171 34.615 0.00 0.00 0.00 2.01
1980 2429 4.329801 TCACGCAGCTATTTACAGAACATG 59.670 41.667 0.00 0.00 0.00 3.21
2093 2594 7.535258 GTGCATCAACTAATTGTTACTTCACAG 59.465 37.037 0.00 0.00 37.07 3.66
2105 2606 2.102578 GGGGCAGTGCATCAACTAATT 58.897 47.619 18.61 0.00 0.00 1.40
2235 2746 8.043710 GCTGCCCTTATCATTATGATAGTTACT 58.956 37.037 13.70 0.00 40.13 2.24
2236 2747 7.281100 GGCTGCCCTTATCATTATGATAGTTAC 59.719 40.741 13.70 7.43 40.13 2.50
2237 2748 7.037658 TGGCTGCCCTTATCATTATGATAGTTA 60.038 37.037 17.53 0.92 40.13 2.24
2379 2890 1.360852 TGAATGTGGCCCCCTTTATGT 59.639 47.619 0.00 0.00 0.00 2.29
2459 2970 8.836413 ACGCTTACATGCTTACATTTTGTATAT 58.164 29.630 0.00 0.00 32.20 0.86
2462 2973 6.489127 ACGCTTACATGCTTACATTTTGTA 57.511 33.333 0.00 0.00 32.87 2.41
2473 2984 7.154656 TCTTCATCATATAACGCTTACATGCT 58.845 34.615 0.00 0.00 0.00 3.79
2474 2985 7.351414 TCTTCATCATATAACGCTTACATGC 57.649 36.000 0.00 0.00 0.00 4.06
2476 2987 7.603784 TGCATCTTCATCATATAACGCTTACAT 59.396 33.333 0.00 0.00 0.00 2.29
2477 2988 6.928492 TGCATCTTCATCATATAACGCTTACA 59.072 34.615 0.00 0.00 0.00 2.41
2478 2989 7.095649 TGTGCATCTTCATCATATAACGCTTAC 60.096 37.037 0.00 0.00 0.00 2.34
2479 2990 6.928492 TGTGCATCTTCATCATATAACGCTTA 59.072 34.615 0.00 0.00 0.00 3.09
2480 2991 5.759763 TGTGCATCTTCATCATATAACGCTT 59.240 36.000 0.00 0.00 0.00 4.68
2481 2992 5.299949 TGTGCATCTTCATCATATAACGCT 58.700 37.500 0.00 0.00 0.00 5.07
2482 2993 5.596268 TGTGCATCTTCATCATATAACGC 57.404 39.130 0.00 0.00 0.00 4.84
2483 2994 7.042523 TGTCTTGTGCATCTTCATCATATAACG 60.043 37.037 0.00 0.00 0.00 3.18
2484 2995 8.146479 TGTCTTGTGCATCTTCATCATATAAC 57.854 34.615 0.00 0.00 0.00 1.89
2490 3001 2.745821 GCTGTCTTGTGCATCTTCATCA 59.254 45.455 0.00 0.00 0.00 3.07
2492 3003 2.089980 GGCTGTCTTGTGCATCTTCAT 58.910 47.619 0.00 0.00 0.00 2.57
2506 3017 7.764443 TGTATAACTTCTTATGTGAAGGCTGTC 59.236 37.037 12.18 0.00 45.49 3.51
2508 3019 7.766278 AGTGTATAACTTCTTATGTGAAGGCTG 59.234 37.037 12.18 0.00 45.49 4.85
2526 3037 6.049149 GCATGTTCTTGCCTCTAGTGTATAA 58.951 40.000 0.00 0.00 36.60 0.98
2528 3039 4.163078 AGCATGTTCTTGCCTCTAGTGTAT 59.837 41.667 6.98 0.00 43.83 2.29
2935 3446 1.348036 ACCAGGCCGGCTAAGATTATC 59.652 52.381 28.56 5.83 39.03 1.75
3220 3732 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
3221 3733 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
3222 3734 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
3223 3735 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
3224 3736 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
3225 3737 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
3226 3738 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
3227 3739 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
3228 3740 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
3229 3741 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
3254 3766 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3255 3767 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3256 3768 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3257 3769 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3258 3770 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3259 3771 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3260 3772 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
3261 3773 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
3262 3774 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
3263 3775 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
3264 3776 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
3265 3777 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
3266 3778 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3267 3779 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3268 3780 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3269 3781 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3270 3782 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3271 3783 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3272 3784 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3273 3785 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3278 3790 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
3279 3791 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
3280 3792 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
3281 3793 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
3282 3794 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3283 3795 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3284 3796 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3285 3797 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3286 3798 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3287 3799 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
3288 3800 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
3289 3801 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
3290 3802 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
3291 3803 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
3292 3804 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
3293 3805 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
3294 3806 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
3295 3807 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3296 3808 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3297 3809 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3298 3810 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3299 3811 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3300 3812 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3301 3813 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3302 3814 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3303 3815 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3304 3816 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3305 3817 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3306 3818 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3307 3819 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3308 3820 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3309 3821 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3310 3822 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3311 3823 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3312 3824 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3313 3825 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3314 3826 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3315 3827 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3329 3841 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
3330 3842 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
3331 3843 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
3332 3844 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
3333 3845 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
3334 3846 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
3335 3847 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
3336 3848 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
3337 3849 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
3338 3850 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
3353 3865 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3354 3866 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3355 3867 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3356 3868 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3357 3869 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3358 3870 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3359 3871 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3360 3872 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3361 3873 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3362 3874 0.953727 TGTAAAGCTGCTGCCTTGTG 59.046 50.000 12.44 0.00 40.80 3.33
3363 3875 1.242076 CTGTAAAGCTGCTGCCTTGT 58.758 50.000 12.44 0.00 40.80 3.16
3364 3876 0.109412 GCTGTAAAGCTGCTGCCTTG 60.109 55.000 12.44 0.00 40.80 3.61
3365 3877 1.246737 GGCTGTAAAGCTGCTGCCTT 61.247 55.000 17.78 8.34 45.14 4.35
3366 3878 1.676967 GGCTGTAAAGCTGCTGCCT 60.677 57.895 17.78 2.45 45.14 4.75
3367 3879 2.704808 GGGCTGTAAAGCTGCTGCC 61.705 63.158 17.04 17.04 46.98 4.85
3368 3880 1.973281 TGGGCTGTAAAGCTGCTGC 60.973 57.895 1.35 7.62 41.14 5.25
3369 3881 0.890542 TGTGGGCTGTAAAGCTGCTG 60.891 55.000 1.35 0.00 41.14 4.41
3370 3882 0.607489 CTGTGGGCTGTAAAGCTGCT 60.607 55.000 4.54 0.00 41.14 4.24
3371 3883 0.890996 ACTGTGGGCTGTAAAGCTGC 60.891 55.000 4.54 0.00 40.72 5.25
3372 3884 0.877071 CACTGTGGGCTGTAAAGCTG 59.123 55.000 4.54 0.00 34.73 4.24
3373 3885 0.474184 ACACTGTGGGCTGTAAAGCT 59.526 50.000 13.09 0.00 34.73 3.74
3374 3886 0.593128 CACACTGTGGGCTGTAAAGC 59.407 55.000 13.09 0.00 0.00 3.51
3375 3887 2.254546 TCACACTGTGGGCTGTAAAG 57.745 50.000 13.09 0.00 33.87 1.85
3376 3888 2.949177 ATCACACTGTGGGCTGTAAA 57.051 45.000 13.09 0.00 33.87 2.01
3377 3889 4.359434 TTTATCACACTGTGGGCTGTAA 57.641 40.909 13.09 5.65 33.87 2.41
3378 3890 4.568072 ATTTATCACACTGTGGGCTGTA 57.432 40.909 13.09 0.00 33.87 2.74
3603 4115 2.307098 AGCTGCCAACTTATCAGACCTT 59.693 45.455 0.00 0.00 0.00 3.50
3663 4175 3.960755 TGACCACATCCTCATAGTACAGG 59.039 47.826 0.00 0.00 0.00 4.00
3716 4228 8.776376 ATGTTGATTAATTCCCAAACATGAAC 57.224 30.769 0.00 0.00 0.00 3.18
3785 4297 5.164620 TCAGAAAATCCAGCACATCTGTA 57.835 39.130 0.00 0.00 41.25 2.74
4390 4972 4.271049 CCATTTATCAGTTACAGCCGTCAG 59.729 45.833 0.00 0.00 0.00 3.51
4472 5054 9.511272 CCTGAAATCATGAACATCTAATATCCA 57.489 33.333 0.00 0.00 0.00 3.41
4637 5219 4.445385 CACAACTAAAGCAAAATCAGGCAC 59.555 41.667 0.00 0.00 0.00 5.01
4643 5225 9.424659 CAAACAAATCACAACTAAAGCAAAATC 57.575 29.630 0.00 0.00 0.00 2.17
4871 5456 4.855340 TGTCCTGAAGGTTTCAAACTCTT 58.145 39.130 0.00 2.16 39.58 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.