Multiple sequence alignment - TraesCS3A01G322100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G322100 chr3A 100.000 8670 0 0 990 9659 565765947 565774616 0.000000e+00 16011.0
1 TraesCS3A01G322100 chr3A 100.000 771 0 0 1 771 565764958 565765728 0.000000e+00 1424.0
2 TraesCS3A01G322100 chr3A 96.000 75 2 1 1365 1438 565766291 565766365 4.740000e-23 121.0
3 TraesCS3A01G322100 chr3A 96.000 75 2 1 1334 1408 565766322 565766395 4.740000e-23 121.0
4 TraesCS3A01G322100 chr3A 93.333 45 2 1 1395 1438 565766291 565766335 2.250000e-06 65.8
5 TraesCS3A01G322100 chr3A 93.333 45 2 1 1334 1378 565766352 565766395 2.250000e-06 65.8
6 TraesCS3A01G322100 chr3B 93.497 3552 134 27 2938 6434 551496930 551500439 0.000000e+00 5190.0
7 TraesCS3A01G322100 chr3B 94.439 1097 45 7 7072 8160 551501192 551502280 0.000000e+00 1674.0
8 TraesCS3A01G322100 chr3B 91.429 910 56 10 1396 2291 551494168 551495069 0.000000e+00 1229.0
9 TraesCS3A01G322100 chr3B 96.303 595 15 4 6481 7070 551500439 551501031 0.000000e+00 970.0
10 TraesCS3A01G322100 chr3B 88.904 730 30 22 79 771 551493026 551493741 0.000000e+00 852.0
11 TraesCS3A01G322100 chr3B 93.727 542 33 1 2399 2940 551495467 551496007 0.000000e+00 811.0
12 TraesCS3A01G322100 chr3B 92.050 478 14 6 8190 8667 551502339 551502792 0.000000e+00 651.0
13 TraesCS3A01G322100 chr3B 92.564 390 19 3 990 1378 551493830 551494210 1.420000e-152 551.0
14 TraesCS3A01G322100 chr3D 94.178 2731 74 23 5974 8671 422951718 422954396 0.000000e+00 4084.0
15 TraesCS3A01G322100 chr3D 95.398 2108 76 9 2390 4478 422947697 422949802 0.000000e+00 3336.0
16 TraesCS3A01G322100 chr3D 94.526 1571 67 6 4423 5979 422949784 422951349 0.000000e+00 2407.0
17 TraesCS3A01G322100 chr3D 91.314 921 62 12 1406 2312 422946501 422947417 0.000000e+00 1242.0
18 TraesCS3A01G322100 chr3D 89.422 709 34 16 79 766 422945189 422945877 0.000000e+00 856.0
19 TraesCS3A01G322100 chr3D 93.590 390 16 2 990 1378 422946153 422946534 3.030000e-159 573.0
20 TraesCS3A01G322100 chr7D 90.602 1330 103 12 2689 4002 34833885 34835208 0.000000e+00 1744.0
21 TraesCS3A01G322100 chr7D 88.679 1219 93 23 4852 6050 34844365 34845558 0.000000e+00 1445.0
22 TraesCS3A01G322100 chr7D 85.106 846 84 18 1406 2232 34832547 34833369 0.000000e+00 826.0
23 TraesCS3A01G322100 chr7D 87.692 455 34 12 6438 6883 34845882 34846323 2.410000e-140 510.0
24 TraesCS3A01G322100 chr7D 90.975 277 23 2 1103 1378 34832305 34832580 1.180000e-98 372.0
25 TraesCS3A01G322100 chr7D 92.181 243 12 6 2395 2635 34833649 34833886 4.320000e-88 337.0
26 TraesCS3A01G322100 chr7D 95.455 198 9 0 6071 6268 34845688 34845885 5.630000e-82 316.0
27 TraesCS3A01G322100 chr7D 80.526 190 14 13 996 1163 34832126 34832314 3.660000e-24 124.0
28 TraesCS3A01G322100 chr7D 83.721 129 19 2 643 771 34831938 34832064 4.740000e-23 121.0
29 TraesCS3A01G322100 chr7D 81.944 144 13 7 990 1122 608763613 608763472 1.030000e-19 110.0
30 TraesCS3A01G322100 chr7A 89.917 1329 113 11 2689 4002 35012664 35013986 0.000000e+00 1692.0
31 TraesCS3A01G322100 chr7A 87.551 1470 106 41 4852 6268 35014594 35016039 0.000000e+00 1629.0
32 TraesCS3A01G322100 chr7A 85.198 885 80 26 1406 2270 35011093 35011946 0.000000e+00 861.0
33 TraesCS3A01G322100 chr7A 85.666 593 65 8 3976 4558 35014014 35014596 2.980000e-169 606.0
34 TraesCS3A01G322100 chr7A 86.726 452 39 9 6438 6883 35016036 35016472 5.250000e-132 483.0
35 TraesCS3A01G322100 chr7A 93.141 277 17 2 1103 1378 35010851 35011126 1.170000e-108 405.0
36 TraesCS3A01G322100 chr7A 92.181 243 12 6 2395 2635 35012428 35012665 4.320000e-88 337.0
37 TraesCS3A01G322100 chr7A 84.496 129 18 2 643 771 35010484 35010610 1.020000e-24 126.0
38 TraesCS3A01G322100 chr7A 97.436 39 1 0 456 494 35010353 35010391 6.260000e-07 67.6
39 TraesCS3A01G322100 chr1A 91.579 475 15 9 8685 9138 575457512 575457042 4.920000e-177 632.0
40 TraesCS3A01G322100 chr1A 89.744 468 20 5 9195 9659 575456745 575456303 3.030000e-159 573.0
41 TraesCS3A01G322100 chr1A 100.000 36 0 0 9158 9193 575456944 575456909 6.260000e-07 67.6
42 TraesCS3A01G322100 chr6A 89.307 505 23 6 9158 9659 600136019 600135543 1.070000e-168 604.0
43 TraesCS3A01G322100 chr6A 89.109 505 24 6 9158 9659 600251926 600252402 4.990000e-167 599.0
44 TraesCS3A01G322100 chr6A 88.085 470 29 12 8686 9136 600136580 600136119 5.140000e-147 532.0
45 TraesCS3A01G322100 chr7B 90.341 352 26 6 9313 9659 292775389 292775041 1.140000e-123 455.0
46 TraesCS3A01G322100 chr7B 78.740 127 26 1 8685 8811 607321564 607321439 6.220000e-12 84.2
47 TraesCS3A01G322100 chr6B 82.776 389 41 17 994 1365 634982843 634982464 3.360000e-84 324.0
48 TraesCS3A01G322100 chr5B 81.122 392 42 14 990 1369 170559270 170559641 1.590000e-72 285.0
49 TraesCS3A01G322100 chr2D 89.873 158 12 2 9158 9312 443737744 443737588 5.920000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G322100 chr3A 565764958 565774616 9658 False 8717.500000 16011 100.000000 1 9659 2 chr3A.!!$F1 9658
1 TraesCS3A01G322100 chr3B 551493026 551502792 9766 False 1491.000000 5190 92.864125 79 8667 8 chr3B.!!$F1 8588
2 TraesCS3A01G322100 chr3D 422945189 422954396 9207 False 2083.000000 4084 93.071333 79 8671 6 chr3D.!!$F1 8592
3 TraesCS3A01G322100 chr7D 34844365 34846323 1958 False 757.000000 1445 90.608667 4852 6883 3 chr7D.!!$F2 2031
4 TraesCS3A01G322100 chr7D 34831938 34835208 3270 False 587.333333 1744 87.185167 643 4002 6 chr7D.!!$F1 3359
5 TraesCS3A01G322100 chr7A 35010353 35016472 6119 False 689.622222 1692 89.145778 456 6883 9 chr7A.!!$F1 6427
6 TraesCS3A01G322100 chr1A 575456303 575457512 1209 True 424.200000 632 93.774333 8685 9659 3 chr1A.!!$R1 974
7 TraesCS3A01G322100 chr6A 600135543 600136580 1037 True 568.000000 604 88.696000 8686 9659 2 chr6A.!!$R1 973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.674534 AGTCGTTCAAGCGGAAGACT 59.325 50.000 14.33 14.33 38.26 3.24 F
1396 1582 0.108329 TCTGATCGCTTCCGTTTCCC 60.108 55.000 0.00 0.00 35.54 3.97 F
2312 2522 0.038166 GGTCCCACAGCTGGAATTCA 59.962 55.000 19.93 0.00 40.55 2.57 F
2370 2908 0.244450 CGTACGTAGGTGGGCTTTCA 59.756 55.000 7.22 0.00 0.00 2.69 F
2603 3225 0.541863 AAGGGGAAGGCGTGTCATAG 59.458 55.000 0.00 0.00 0.00 2.23 F
2870 3492 1.336887 GGCATATCACGTGGTATCGCT 60.337 52.381 27.16 8.11 0.00 4.93 F
4478 6174 1.637553 AGAGTGGCACCCATCTTGATT 59.362 47.619 15.27 0.00 35.28 2.57 F
4828 6525 1.052617 TGAGTCCATTCCAACCGACA 58.947 50.000 0.00 0.00 0.00 4.35 F
5340 7039 1.067916 ACCGAACAGTTAACGCCGT 59.932 52.632 0.00 0.00 0.00 5.68 F
6459 8691 0.108662 TGCATGTCACACTCGCCTAG 60.109 55.000 0.00 0.00 0.00 3.02 F
6917 9157 4.039004 TGCTTCATAACAGCACCATTGTTT 59.961 37.500 0.00 0.00 42.49 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1377 1563 0.108329 GGGAAACGGAAGCGATCAGA 60.108 55.000 0.00 0.00 0.00 3.27 R
2816 3438 0.249826 TCATTCACGTCACAGCAGCA 60.250 50.000 0.00 0.00 0.00 4.41 R
4149 5782 1.136695 CAAAGTTCAAACAGCCAGGCA 59.863 47.619 15.80 0.00 0.00 4.75 R
4364 6010 2.945668 GCAGGAAAGGAATATTGTCGCT 59.054 45.455 0.00 0.00 0.00 4.93 R
4511 6208 1.618343 AGGTTACCAGCATTTGCCAAC 59.382 47.619 3.51 0.00 43.38 3.77 R
4512 6209 2.008242 AGGTTACCAGCATTTGCCAA 57.992 45.000 3.51 0.00 43.38 4.52 R
5909 7653 0.110056 GTTTCATGCTGACTGCCACG 60.110 55.000 1.50 0.00 42.00 4.94 R
6076 8305 1.714794 AGCTGTCGACAAAATCCGAG 58.285 50.000 20.49 6.26 35.31 4.63 R
7149 9548 2.218603 GGCTGAAAAACCTCTTGTCGA 58.781 47.619 0.00 0.00 0.00 4.20 R
7317 9722 2.787473 TCCAATACCTGCCAGACAAG 57.213 50.000 0.00 0.00 0.00 3.16 R
8683 11159 0.313672 GGTGCTCCAACGCATTTTCA 59.686 50.000 0.00 0.00 42.62 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.769345 AGAAAGATTTTTGTGCCCCAAA 57.231 36.364 0.00 0.00 41.25 3.28
43 44 3.806316 AAATGTTAGTCGTTCAAGCGG 57.194 42.857 0.00 0.00 0.00 5.52
44 45 2.736144 ATGTTAGTCGTTCAAGCGGA 57.264 45.000 0.00 0.00 0.00 5.54
45 46 2.512485 TGTTAGTCGTTCAAGCGGAA 57.488 45.000 0.00 0.00 0.00 4.30
46 47 2.400399 TGTTAGTCGTTCAAGCGGAAG 58.600 47.619 0.00 0.00 35.82 3.46
47 48 2.034939 TGTTAGTCGTTCAAGCGGAAGA 59.965 45.455 0.00 0.00 35.82 2.87
48 49 2.342910 TAGTCGTTCAAGCGGAAGAC 57.657 50.000 11.77 11.77 35.82 3.01
49 50 0.674534 AGTCGTTCAAGCGGAAGACT 59.325 50.000 14.33 14.33 38.26 3.24
50 51 1.884579 AGTCGTTCAAGCGGAAGACTA 59.115 47.619 16.55 0.00 39.77 2.59
51 52 2.492484 AGTCGTTCAAGCGGAAGACTAT 59.508 45.455 16.55 3.98 39.77 2.12
52 53 3.056749 AGTCGTTCAAGCGGAAGACTATT 60.057 43.478 16.55 3.54 39.77 1.73
53 54 3.303760 GTCGTTCAAGCGGAAGACTATTC 59.696 47.826 12.13 0.00 35.82 1.75
54 55 3.057104 TCGTTCAAGCGGAAGACTATTCA 60.057 43.478 0.00 0.00 35.82 2.57
55 56 3.865745 CGTTCAAGCGGAAGACTATTCAT 59.134 43.478 0.00 0.00 35.82 2.57
56 57 5.041287 CGTTCAAGCGGAAGACTATTCATA 58.959 41.667 0.00 0.00 35.82 2.15
57 58 5.692204 CGTTCAAGCGGAAGACTATTCATAT 59.308 40.000 0.00 0.00 35.82 1.78
58 59 6.861572 CGTTCAAGCGGAAGACTATTCATATA 59.138 38.462 0.00 0.00 35.82 0.86
59 60 7.061210 CGTTCAAGCGGAAGACTATTCATATAG 59.939 40.741 0.00 0.00 37.00 1.31
60 61 6.390721 TCAAGCGGAAGACTATTCATATAGC 58.609 40.000 0.00 0.00 37.80 2.97
61 62 5.984695 AGCGGAAGACTATTCATATAGCA 57.015 39.130 0.00 0.00 37.80 3.49
62 63 6.346477 AGCGGAAGACTATTCATATAGCAA 57.654 37.500 0.00 0.00 37.80 3.91
63 64 6.940739 AGCGGAAGACTATTCATATAGCAAT 58.059 36.000 0.00 0.00 37.80 3.56
64 65 7.390027 AGCGGAAGACTATTCATATAGCAATT 58.610 34.615 0.00 0.00 37.80 2.32
65 66 7.880195 AGCGGAAGACTATTCATATAGCAATTT 59.120 33.333 0.00 0.00 37.80 1.82
66 67 8.507249 GCGGAAGACTATTCATATAGCAATTTT 58.493 33.333 0.00 0.00 37.80 1.82
143 149 2.111043 CAAGGCCGGGCGTATCAT 59.889 61.111 23.81 0.00 0.00 2.45
161 167 7.624344 GCGTATCATGATTATTGAGGTTTAGCC 60.624 40.741 14.65 0.00 37.58 3.93
166 172 2.614829 TATTGAGGTTTAGCCGGAGC 57.385 50.000 5.05 0.00 43.70 4.70
213 220 6.500684 AACATGGAATTGCAACTACAGTAG 57.499 37.500 2.94 6.00 0.00 2.57
268 296 6.814954 AAATGAGATAAGCTTCTACTCCCA 57.185 37.500 0.00 0.00 0.00 4.37
272 300 6.821388 TGAGATAAGCTTCTACTCCCAAATC 58.179 40.000 0.00 0.00 0.00 2.17
453 488 1.873591 CGTTGGAAGTTGGGAAGAGTG 59.126 52.381 0.00 0.00 0.00 3.51
568 607 3.083997 CCGTCCCCTTCCCTCCAG 61.084 72.222 0.00 0.00 0.00 3.86
570 609 3.412408 GTCCCCTTCCCTCCAGCC 61.412 72.222 0.00 0.00 0.00 4.85
571 610 3.626596 TCCCCTTCCCTCCAGCCT 61.627 66.667 0.00 0.00 0.00 4.58
694 733 3.674050 TACCCCTCCCGCTCCAGAC 62.674 68.421 0.00 0.00 0.00 3.51
1017 1122 2.914838 CCATTTAAAACCTTCGCTTCGC 59.085 45.455 0.00 0.00 0.00 4.70
1107 1241 2.637919 CCTCAGATCCAATGGGGGT 58.362 57.895 0.00 0.00 34.39 4.95
1224 1409 0.812549 GTCTCCTCCGAGTTCTGGAC 59.187 60.000 0.00 0.00 37.40 4.02
1369 1555 3.675619 ATCGCTTCCGTTTCCCCCG 62.676 63.158 0.00 0.00 35.54 5.73
1372 1558 2.436115 CTTCCGTTTCCCCCGCTC 60.436 66.667 0.00 0.00 0.00 5.03
1373 1559 2.926242 TTCCGTTTCCCCCGCTCT 60.926 61.111 0.00 0.00 0.00 4.09
1374 1560 2.854187 CTTCCGTTTCCCCCGCTCTC 62.854 65.000 0.00 0.00 0.00 3.20
1375 1561 4.814294 CCGTTTCCCCCGCTCTCG 62.814 72.222 0.00 0.00 0.00 4.04
1377 1563 4.083862 GTTTCCCCCGCTCTCGCT 62.084 66.667 0.00 0.00 0.00 4.93
1378 1564 3.771160 TTTCCCCCGCTCTCGCTC 61.771 66.667 0.00 0.00 0.00 5.03
1379 1565 4.761058 TTCCCCCGCTCTCGCTCT 62.761 66.667 0.00 0.00 0.00 4.09
1382 1568 3.222855 CCCCGCTCTCGCTCTGAT 61.223 66.667 0.00 0.00 0.00 2.90
1383 1569 2.334653 CCCGCTCTCGCTCTGATC 59.665 66.667 0.00 0.00 0.00 2.92
1384 1570 2.051435 CCGCTCTCGCTCTGATCG 60.051 66.667 0.00 0.00 0.00 3.69
1385 1571 2.725450 CGCTCTCGCTCTGATCGC 60.725 66.667 0.00 0.00 0.00 4.58
1386 1572 2.721231 GCTCTCGCTCTGATCGCT 59.279 61.111 0.00 0.00 0.00 4.93
1387 1573 1.065600 GCTCTCGCTCTGATCGCTT 59.934 57.895 0.00 0.00 0.00 4.68
1388 1574 0.934436 GCTCTCGCTCTGATCGCTTC 60.934 60.000 0.00 0.00 0.00 3.86
1389 1575 0.317770 CTCTCGCTCTGATCGCTTCC 60.318 60.000 0.00 0.00 0.00 3.46
1390 1576 1.656875 CTCGCTCTGATCGCTTCCG 60.657 63.158 0.00 0.00 0.00 4.30
1391 1577 2.103143 CGCTCTGATCGCTTCCGT 59.897 61.111 0.00 0.00 35.54 4.69
1392 1578 1.517257 CGCTCTGATCGCTTCCGTT 60.517 57.895 0.00 0.00 35.54 4.44
1393 1579 1.078759 CGCTCTGATCGCTTCCGTTT 61.079 55.000 0.00 0.00 35.54 3.60
1394 1580 0.647925 GCTCTGATCGCTTCCGTTTC 59.352 55.000 0.00 0.00 35.54 2.78
1395 1581 1.281899 CTCTGATCGCTTCCGTTTCC 58.718 55.000 0.00 0.00 35.54 3.13
1396 1582 0.108329 TCTGATCGCTTCCGTTTCCC 60.108 55.000 0.00 0.00 35.54 3.97
1397 1583 1.078708 TGATCGCTTCCGTTTCCCC 60.079 57.895 0.00 0.00 35.54 4.81
1398 1584 1.818363 GATCGCTTCCGTTTCCCCC 60.818 63.158 0.00 0.00 35.54 5.40
1399 1585 3.675619 ATCGCTTCCGTTTCCCCCG 62.676 63.158 0.00 0.00 35.54 5.73
1401 1587 4.717313 GCTTCCGTTTCCCCCGCT 62.717 66.667 0.00 0.00 0.00 5.52
1402 1588 2.436115 CTTCCGTTTCCCCCGCTC 60.436 66.667 0.00 0.00 0.00 5.03
1403 1589 2.926242 TTCCGTTTCCCCCGCTCT 60.926 61.111 0.00 0.00 0.00 4.09
1404 1590 2.854187 CTTCCGTTTCCCCCGCTCTC 62.854 65.000 0.00 0.00 0.00 3.20
1405 1591 4.814294 CCGTTTCCCCCGCTCTCG 62.814 72.222 0.00 0.00 0.00 4.04
1407 1593 4.083862 GTTTCCCCCGCTCTCGCT 62.084 66.667 0.00 0.00 0.00 4.93
1408 1594 3.771160 TTTCCCCCGCTCTCGCTC 61.771 66.667 0.00 0.00 0.00 5.03
1409 1595 4.761058 TTCCCCCGCTCTCGCTCT 62.761 66.667 0.00 0.00 0.00 4.09
1412 1598 3.222855 CCCCGCTCTCGCTCTGAT 61.223 66.667 0.00 0.00 0.00 2.90
1413 1599 2.334653 CCCGCTCTCGCTCTGATC 59.665 66.667 0.00 0.00 0.00 2.92
1414 1600 2.051435 CCGCTCTCGCTCTGATCG 60.051 66.667 0.00 0.00 0.00 3.69
1415 1601 2.725450 CGCTCTCGCTCTGATCGC 60.725 66.667 0.00 0.00 0.00 4.58
1416 1602 2.721231 GCTCTCGCTCTGATCGCT 59.279 61.111 0.00 0.00 0.00 4.93
1417 1603 1.065600 GCTCTCGCTCTGATCGCTT 59.934 57.895 0.00 0.00 0.00 4.68
1418 1604 0.934436 GCTCTCGCTCTGATCGCTTC 60.934 60.000 0.00 0.00 0.00 3.86
1419 1605 0.317770 CTCTCGCTCTGATCGCTTCC 60.318 60.000 0.00 0.00 0.00 3.46
1420 1606 1.656875 CTCGCTCTGATCGCTTCCG 60.657 63.158 0.00 0.00 0.00 4.30
1421 1607 2.103143 CGCTCTGATCGCTTCCGT 59.897 61.111 0.00 0.00 35.54 4.69
1422 1608 1.517257 CGCTCTGATCGCTTCCGTT 60.517 57.895 0.00 0.00 35.54 4.44
1423 1609 1.078759 CGCTCTGATCGCTTCCGTTT 61.079 55.000 0.00 0.00 35.54 3.60
1424 1610 0.647925 GCTCTGATCGCTTCCGTTTC 59.352 55.000 0.00 0.00 35.54 2.78
1425 1611 1.281899 CTCTGATCGCTTCCGTTTCC 58.718 55.000 0.00 0.00 35.54 3.13
1426 1612 0.108329 TCTGATCGCTTCCGTTTCCC 60.108 55.000 0.00 0.00 35.54 3.97
1427 1613 1.078708 TGATCGCTTCCGTTTCCCC 60.079 57.895 0.00 0.00 35.54 4.81
1428 1614 1.818363 GATCGCTTCCGTTTCCCCC 60.818 63.158 0.00 0.00 35.54 5.40
1429 1615 3.675619 ATCGCTTCCGTTTCCCCCG 62.676 63.158 0.00 0.00 35.54 5.73
1504 1690 2.337532 GGGCAATGCGGATCATGC 59.662 61.111 5.11 5.11 35.13 4.06
1541 1740 2.300623 CACAGTTTACGTGCTGCTTC 57.699 50.000 13.88 0.00 36.26 3.86
1562 1761 1.146263 GGTCAGATGGCGGGGTTAG 59.854 63.158 0.00 0.00 0.00 2.34
1585 1784 1.351430 GGCATTTCCGGCGCTTTTTC 61.351 55.000 7.64 0.00 0.00 2.29
1663 1863 2.765699 TGCTTGGAATGGGAATTTAGGC 59.234 45.455 0.00 0.00 0.00 3.93
1717 1917 5.238432 TGCCATGTATTTGTCCGATCAATAC 59.762 40.000 6.11 6.11 0.00 1.89
1754 1954 2.079925 GTGATCAAGGTTGACTGAGCC 58.920 52.381 0.00 0.00 40.49 4.70
1835 2035 2.648059 CTGGGTCTGCCTTAATTGAGG 58.352 52.381 11.90 11.90 39.93 3.86
1847 2047 4.878397 CCTTAATTGAGGGCTTGACTACTG 59.122 45.833 8.41 0.00 32.94 2.74
1930 2130 4.956085 TCTTGTCCTGAATTTCTTCGTGA 58.044 39.130 0.00 0.00 33.86 4.35
1957 2157 6.339730 GGTGACAATGCAAATGGATGATTTA 58.660 36.000 7.65 0.00 32.65 1.40
2076 2280 1.476085 TCAATGTGCAAATTAGGGGCG 59.524 47.619 0.65 0.00 0.00 6.13
2232 2440 9.379791 GTAGTTAAAGAGCAATACAACACCTAT 57.620 33.333 0.00 0.00 0.00 2.57
2250 2458 3.572255 CCTATGAAGAGCCTACAGGACTC 59.428 52.174 0.00 5.63 38.08 3.36
2261 2469 5.046231 AGCCTACAGGACTCCTAAGAAAAAG 60.046 44.000 0.00 0.00 37.39 2.27
2273 2483 1.370051 GAAAAAGGCGACGTGGTGC 60.370 57.895 0.00 0.00 0.00 5.01
2291 2501 3.498082 GTGCGGTTTTATTGGATGTCAC 58.502 45.455 0.00 0.00 0.00 3.67
2295 2505 3.086282 GGTTTTATTGGATGTCACGGGT 58.914 45.455 0.00 0.00 0.00 5.28
2298 2508 0.834612 TATTGGATGTCACGGGTCCC 59.165 55.000 0.00 0.00 0.00 4.46
2299 2509 1.204786 ATTGGATGTCACGGGTCCCA 61.205 55.000 9.12 0.00 0.00 4.37
2308 2518 3.636231 CGGGTCCCACAGCTGGAA 61.636 66.667 19.93 0.00 40.55 3.53
2312 2522 0.038166 GGTCCCACAGCTGGAATTCA 59.962 55.000 19.93 0.00 40.55 2.57
2314 2524 0.329261 TCCCACAGCTGGAATTCAGG 59.671 55.000 19.93 7.53 43.54 3.86
2315 2525 0.682209 CCCACAGCTGGAATTCAGGG 60.682 60.000 19.93 12.66 43.54 4.45
2316 2526 0.682209 CCACAGCTGGAATTCAGGGG 60.682 60.000 19.93 0.00 43.54 4.79
2317 2527 0.682209 CACAGCTGGAATTCAGGGGG 60.682 60.000 19.93 0.00 43.54 5.40
2352 2890 9.914131 TTAGTATGAGATTATGAAGGAATCACG 57.086 33.333 0.00 0.00 41.93 4.35
2370 2908 0.244450 CGTACGTAGGTGGGCTTTCA 59.756 55.000 7.22 0.00 0.00 2.69
2525 3146 3.079578 GCCTACCTTCCACTTTAACACC 58.920 50.000 0.00 0.00 0.00 4.16
2603 3225 0.541863 AAGGGGAAGGCGTGTCATAG 59.458 55.000 0.00 0.00 0.00 2.23
2722 3344 4.392047 TGGAGCCACTTGCATGATATAAG 58.608 43.478 6.60 0.00 44.83 1.73
2748 3370 4.647611 TCTGAGATTTTTAGGGCGTGAAA 58.352 39.130 0.00 0.00 0.00 2.69
2827 3449 1.839598 GCTGAGTGTGCTGCTGTGAC 61.840 60.000 0.00 0.00 0.00 3.67
2837 3459 1.501169 CTGCTGTGACGTGAATGACA 58.499 50.000 0.00 0.00 0.00 3.58
2870 3492 1.336887 GGCATATCACGTGGTATCGCT 60.337 52.381 27.16 8.11 0.00 4.93
3029 4577 6.705863 AATTATCTTTGGCTCATTGGTCTC 57.294 37.500 0.00 0.00 0.00 3.36
3286 4834 4.030216 GGATGAAAAGGGGCTGGAAAATA 58.970 43.478 0.00 0.00 0.00 1.40
3366 4915 6.082984 GGCCGATATAGTAAACTCTAACGAC 58.917 44.000 6.72 0.00 0.00 4.34
3485 5035 4.019950 TGATGGATGGTGTATGCCTATCTG 60.020 45.833 0.00 0.00 0.00 2.90
3613 5165 4.014406 TGCTAGTCCTTATGTCGACTCAA 58.986 43.478 17.92 9.45 39.92 3.02
3655 5207 3.256383 CAGAACCAAAAGATGTGCATCCA 59.744 43.478 8.41 0.00 38.58 3.41
3872 5435 3.499918 CACACCCTGTTTTCTCTGATGAC 59.500 47.826 0.00 0.00 0.00 3.06
3941 5504 4.770795 CGGGTTATCTTCTCCACAGAAAT 58.229 43.478 0.00 0.00 38.23 2.17
4025 5642 7.230849 TGCCAATACTCTGAACATTTTCATT 57.769 32.000 0.00 0.00 41.05 2.57
4032 5649 9.807649 ATACTCTGAACATTTTCATTTTATGGC 57.192 29.630 0.00 0.00 41.05 4.40
4109 5740 6.822667 ATAGATGATGCGATGCCATTTTAA 57.177 33.333 0.00 0.00 0.00 1.52
4225 5871 6.033091 CACAAGTTGTTAAGTTTTGACCGAAC 59.967 38.462 5.57 0.00 0.00 3.95
4233 5879 4.247267 AGTTTTGACCGAACGTGAGATA 57.753 40.909 0.00 0.00 32.38 1.98
4364 6010 4.746535 TGTTTGGTTCAGAGTCACACTA 57.253 40.909 0.00 0.00 0.00 2.74
4460 6148 3.908643 TCGTCCTAAGTCTAGCAGAGA 57.091 47.619 0.00 0.00 0.00 3.10
4478 6174 1.637553 AGAGTGGCACCCATCTTGATT 59.362 47.619 15.27 0.00 35.28 2.57
4490 6186 5.594317 ACCCATCTTGATTGCATAACCTTAC 59.406 40.000 0.00 0.00 0.00 2.34
4537 6234 4.095932 GGCAAATGCTGGTAACCTTAGTAC 59.904 45.833 5.25 0.00 41.70 2.73
4631 6328 8.388103 CCCTACTACGAAAATGTTTCAGTTATG 58.612 37.037 0.00 0.00 0.00 1.90
4635 6332 8.287503 ACTACGAAAATGTTTCAGTTATGGAAC 58.712 33.333 0.00 0.00 44.15 3.62
4722 6419 7.435192 ACTTTCAACTATTTTGTAAGTGCAAGC 59.565 33.333 7.86 0.00 38.18 4.01
4758 6455 4.082571 ACAAGTCAATTGGCAGATAACAGC 60.083 41.667 13.47 0.00 43.68 4.40
4800 6497 5.029807 TGATCCACTACCGAAAATGCATA 57.970 39.130 0.00 0.00 0.00 3.14
4828 6525 1.052617 TGAGTCCATTCCAACCGACA 58.947 50.000 0.00 0.00 0.00 4.35
4917 6614 4.038522 TGCAAGGCACTAAACAATGCTAAA 59.961 37.500 0.00 0.00 38.49 1.85
5138 6836 5.922053 TCATGCTAGTTCAGTGATATGCTT 58.078 37.500 0.00 0.00 0.00 3.91
5340 7039 1.067916 ACCGAACAGTTAACGCCGT 59.932 52.632 0.00 0.00 0.00 5.68
5371 7070 6.575244 AATGGAGTCATGTATCAGGGTTTA 57.425 37.500 0.00 0.00 33.18 2.01
5743 7455 4.342092 GGAGCATGTGGGCATTTAATAGTT 59.658 41.667 0.00 0.00 35.83 2.24
5748 7460 3.692101 TGTGGGCATTTAATAGTTGGACG 59.308 43.478 0.00 0.00 0.00 4.79
5851 7571 6.281848 TGTTTTTCACTAGTAAGAGTTGCG 57.718 37.500 0.00 0.00 0.00 4.85
5884 7604 2.369983 TCATTCCCATCCTTCCATGC 57.630 50.000 0.00 0.00 0.00 4.06
5909 7653 5.023533 TGGCATAGTAAATCTGTGACTCC 57.976 43.478 0.00 0.00 42.68 3.85
5942 7686 6.864685 TCAGCATGAAACATTAGAAAGCAAAG 59.135 34.615 0.00 0.00 45.97 2.77
6076 8305 2.099263 TGTCGACTGCCTGAGTTATAGC 59.901 50.000 17.92 0.00 33.83 2.97
6078 8307 2.619177 TCGACTGCCTGAGTTATAGCTC 59.381 50.000 9.50 9.50 33.83 4.09
6180 8409 7.568349 TGCTGTTGATAATTCTCCTGATACTT 58.432 34.615 0.00 0.00 0.00 2.24
6410 8642 3.000041 CCAAGCTGCGAGTATGTACAAA 59.000 45.455 0.00 0.00 0.00 2.83
6459 8691 0.108662 TGCATGTCACACTCGCCTAG 60.109 55.000 0.00 0.00 0.00 3.02
6538 8773 5.616270 TGCATGTCAAACTACTTCTGGTTA 58.384 37.500 0.00 0.00 0.00 2.85
6709 8949 5.537188 CAAGTATGGTAGCTCAATCTCTCC 58.463 45.833 0.00 0.00 0.00 3.71
6775 9015 7.232534 TCAAGTTAACCTGTCCATTTGCTTATT 59.767 33.333 0.88 0.00 0.00 1.40
6917 9157 4.039004 TGCTTCATAACAGCACCATTGTTT 59.961 37.500 0.00 0.00 42.49 2.83
7066 9306 5.059833 CCAGAAATCCTGAGGTATGTTAGC 58.940 45.833 0.00 0.00 45.78 3.09
7075 9474 5.009811 CCTGAGGTATGTTAGCTACCAGTAC 59.990 48.000 5.43 4.44 40.99 2.73
7076 9475 5.512298 TGAGGTATGTTAGCTACCAGTACA 58.488 41.667 5.43 1.70 40.99 2.90
7149 9548 9.647652 CAACAGGTTGTGTATGCTGTATTGCAT 62.648 40.741 7.16 7.16 42.58 3.96
7293 9698 5.395103 CGTCTTCTTCCTCCAGATTCTGATT 60.395 44.000 15.36 0.00 32.44 2.57
7294 9699 6.048509 GTCTTCTTCCTCCAGATTCTGATTC 58.951 44.000 15.36 0.00 32.44 2.52
7295 9700 5.963253 TCTTCTTCCTCCAGATTCTGATTCT 59.037 40.000 15.36 0.00 32.44 2.40
7296 9701 5.611128 TCTTCCTCCAGATTCTGATTCTG 57.389 43.478 15.36 18.20 40.25 3.02
7297 9702 5.275630 TCTTCCTCCAGATTCTGATTCTGA 58.724 41.667 23.98 13.01 42.63 3.27
7298 9703 5.904169 TCTTCCTCCAGATTCTGATTCTGAT 59.096 40.000 23.98 0.00 42.63 2.90
7308 9713 6.817641 AGATTCTGATTCTGATCATATTCCGC 59.182 38.462 0.00 0.00 41.28 5.54
7317 9722 8.547967 TTCTGATCATATTCCGCCTTATAAAC 57.452 34.615 0.00 0.00 0.00 2.01
7325 9730 3.869065 TCCGCCTTATAAACTTGTCTGG 58.131 45.455 0.00 0.00 0.00 3.86
7755 10161 9.755804 TTTATTTGTGTATGCTGATTTTCACAA 57.244 25.926 0.00 0.00 41.70 3.33
7823 10230 3.562973 GCATGCAGTTACTGATGCTACAT 59.437 43.478 26.69 14.80 42.98 2.29
7872 10295 1.691196 TGGCACATTAGGCTTATGGC 58.309 50.000 16.95 15.57 40.90 4.40
7873 10296 1.064091 TGGCACATTAGGCTTATGGCA 60.064 47.619 16.95 13.55 42.80 4.92
7874 10297 1.338020 GGCACATTAGGCTTATGGCAC 59.662 52.381 16.95 6.34 44.01 5.01
7875 10298 5.778177 TGGCACATTAGGCTTATGGCACA 62.778 47.826 16.95 13.10 40.49 4.57
7876 10299 8.893388 TATGGCACATTAGGCTTATGGCACAT 62.893 42.308 16.95 19.09 45.96 3.21
7958 10381 6.596309 TCTACATATCTGATGCCAACTAGG 57.404 41.667 0.00 0.00 41.84 3.02
7986 10409 4.835284 TTCTAATACCATGTGGCAGTCA 57.165 40.909 0.00 0.00 39.32 3.41
8141 10570 2.760092 TCAATCAGGTTTATGCTTGGGC 59.240 45.455 0.00 0.00 39.26 5.36
8160 10589 4.588528 TGGGCTAAGTTTTCAATTTCAGCT 59.411 37.500 0.00 0.00 0.00 4.24
8229 10688 6.298361 CCAAGGATGTTGAAAATCCCTTTTT 58.702 36.000 10.77 0.00 44.09 1.94
8278 10754 3.629398 GGGAATTCTCAATACAGCCACTG 59.371 47.826 5.23 0.00 37.52 3.66
8279 10755 3.065925 GGAATTCTCAATACAGCCACTGC 59.934 47.826 5.23 0.00 34.37 4.40
8291 10767 2.464157 GCCACTGCTTCAGTTCTAGT 57.536 50.000 0.00 0.00 42.59 2.57
8292 10768 3.594603 GCCACTGCTTCAGTTCTAGTA 57.405 47.619 0.00 0.00 42.59 1.82
8293 10769 3.516615 GCCACTGCTTCAGTTCTAGTAG 58.483 50.000 0.00 0.00 42.59 2.57
8294 10770 3.056465 GCCACTGCTTCAGTTCTAGTAGT 60.056 47.826 0.00 0.00 42.59 2.73
8295 10771 4.158025 GCCACTGCTTCAGTTCTAGTAGTA 59.842 45.833 0.00 0.00 42.59 1.82
8296 10772 5.642686 CCACTGCTTCAGTTCTAGTAGTAC 58.357 45.833 0.00 0.00 42.59 2.73
8297 10773 5.416326 CCACTGCTTCAGTTCTAGTAGTACT 59.584 44.000 8.14 8.14 42.59 2.73
8298 10774 6.598457 CCACTGCTTCAGTTCTAGTAGTACTA 59.402 42.308 8.92 9.66 42.59 1.82
8299 10775 7.414319 CCACTGCTTCAGTTCTAGTAGTACTAC 60.414 44.444 23.03 23.03 42.59 2.73
8479 10955 5.659525 TGTTGTATATAGGCGGCATATACCT 59.340 40.000 28.07 12.44 39.51 3.08
8681 11157 7.284518 GCTAGTACAATAGCAAGCTTATAGC 57.715 40.000 0.00 0.00 46.12 2.97
8682 11158 6.311690 GCTAGTACAATAGCAAGCTTATAGCC 59.688 42.308 0.00 0.00 46.12 3.93
8683 11159 6.426646 AGTACAATAGCAAGCTTATAGCCT 57.573 37.500 0.00 0.00 43.77 4.58
8825 11320 1.236616 CCAGCGGCAAGTGTCATTCA 61.237 55.000 1.45 0.00 0.00 2.57
8871 11367 2.680312 TGCATCCTACTCAACTGCTC 57.320 50.000 0.00 0.00 34.02 4.26
8920 11416 0.175760 GCACCACGCTCCTCAATCTA 59.824 55.000 0.00 0.00 37.77 1.98
9006 11503 4.379302 AATCAAGAGTTCAAAGCTCCCT 57.621 40.909 0.00 0.00 33.69 4.20
9068 11565 4.393371 TCTTCATTTTCGTTGTGTGACACA 59.607 37.500 15.39 15.39 43.02 3.72
9232 11970 0.322098 CATGTGGGACCCTTAACGCA 60.322 55.000 13.00 0.00 0.00 5.24
9256 11994 6.091577 CAGAACTTTACCATGCATGTACGTTA 59.908 38.462 24.58 7.47 0.00 3.18
9292 12030 4.081406 CTCAACTCCATGTCCCATTTTGA 58.919 43.478 0.00 0.00 0.00 2.69
9302 12040 3.960102 TGTCCCATTTTGAAGAAACAGCT 59.040 39.130 0.00 0.00 0.00 4.24
9303 12041 4.202141 TGTCCCATTTTGAAGAAACAGCTG 60.202 41.667 13.48 13.48 0.00 4.24
9304 12042 3.960102 TCCCATTTTGAAGAAACAGCTGT 59.040 39.130 15.25 15.25 0.00 4.40
9305 12043 4.053295 CCCATTTTGAAGAAACAGCTGTG 58.947 43.478 22.49 2.63 0.00 3.66
9306 12044 4.441913 CCCATTTTGAAGAAACAGCTGTGT 60.442 41.667 22.49 16.52 39.19 3.72
9307 12045 5.221224 CCCATTTTGAAGAAACAGCTGTGTA 60.221 40.000 22.49 0.00 35.08 2.90
9308 12046 5.687285 CCATTTTGAAGAAACAGCTGTGTAC 59.313 40.000 22.49 14.48 35.08 2.90
9309 12047 6.460123 CCATTTTGAAGAAACAGCTGTGTACT 60.460 38.462 22.49 16.51 35.08 2.73
9310 12048 5.734855 TTTGAAGAAACAGCTGTGTACTC 57.265 39.130 22.49 14.84 35.08 2.59
9311 12049 3.728845 TGAAGAAACAGCTGTGTACTCC 58.271 45.455 22.49 8.71 35.08 3.85
9312 12050 3.388024 TGAAGAAACAGCTGTGTACTCCT 59.612 43.478 22.49 5.00 35.08 3.69
9313 12051 4.141711 TGAAGAAACAGCTGTGTACTCCTT 60.142 41.667 22.49 14.11 35.08 3.36
9314 12052 4.423625 AGAAACAGCTGTGTACTCCTTT 57.576 40.909 22.49 8.10 35.08 3.11
9315 12053 4.781934 AGAAACAGCTGTGTACTCCTTTT 58.218 39.130 22.49 7.28 35.08 2.27
9316 12054 5.925509 AGAAACAGCTGTGTACTCCTTTTA 58.074 37.500 22.49 0.00 35.08 1.52
9317 12055 5.992217 AGAAACAGCTGTGTACTCCTTTTAG 59.008 40.000 22.49 0.00 35.08 1.85
9318 12056 5.546621 AACAGCTGTGTACTCCTTTTAGA 57.453 39.130 22.49 0.00 35.08 2.10
9319 12057 5.546621 ACAGCTGTGTACTCCTTTTAGAA 57.453 39.130 20.97 0.00 34.05 2.10
9320 12058 5.925509 ACAGCTGTGTACTCCTTTTAGAAA 58.074 37.500 20.97 0.00 34.05 2.52
9321 12059 6.354130 ACAGCTGTGTACTCCTTTTAGAAAA 58.646 36.000 20.97 0.00 34.05 2.29
9322 12060 6.826741 ACAGCTGTGTACTCCTTTTAGAAAAA 59.173 34.615 20.97 0.00 34.05 1.94
9359 12097 5.276868 CCATGATTTTTCATCGACCTACGTC 60.277 44.000 0.00 0.00 43.13 4.34
9445 12186 9.188588 TGATTAACTACTACGAGTGACAAAAAG 57.811 33.333 0.00 0.00 0.00 2.27
9615 12356 3.119424 CGTCACCTTCTTTCTCTCCTACC 60.119 52.174 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.769345 TTTGGGGCACAAAAATCTTTCT 57.231 36.364 13.49 0.00 45.59 2.52
21 22 4.273969 TCCGCTTGAACGACTAACATTTTT 59.726 37.500 0.00 0.00 34.06 1.94
22 23 3.810941 TCCGCTTGAACGACTAACATTTT 59.189 39.130 0.00 0.00 34.06 1.82
23 24 3.395639 TCCGCTTGAACGACTAACATTT 58.604 40.909 0.00 0.00 34.06 2.32
24 25 3.034721 TCCGCTTGAACGACTAACATT 57.965 42.857 0.00 0.00 34.06 2.71
25 26 2.736144 TCCGCTTGAACGACTAACAT 57.264 45.000 0.00 0.00 34.06 2.71
26 27 2.034939 TCTTCCGCTTGAACGACTAACA 59.965 45.455 0.00 0.00 34.06 2.41
27 28 2.407696 GTCTTCCGCTTGAACGACTAAC 59.592 50.000 0.00 0.00 32.75 2.34
28 29 2.295349 AGTCTTCCGCTTGAACGACTAA 59.705 45.455 12.09 0.00 38.52 2.24
29 30 1.884579 AGTCTTCCGCTTGAACGACTA 59.115 47.619 12.09 0.00 38.52 2.59
30 31 0.674534 AGTCTTCCGCTTGAACGACT 59.325 50.000 0.00 9.79 36.99 4.18
31 32 2.342910 TAGTCTTCCGCTTGAACGAC 57.657 50.000 0.00 0.00 34.26 4.34
32 33 3.057104 TGAATAGTCTTCCGCTTGAACGA 60.057 43.478 0.00 0.00 34.06 3.85
33 34 3.250744 TGAATAGTCTTCCGCTTGAACG 58.749 45.455 0.00 0.00 0.00 3.95
34 35 7.148722 GCTATATGAATAGTCTTCCGCTTGAAC 60.149 40.741 0.00 0.00 37.90 3.18
35 36 6.868864 GCTATATGAATAGTCTTCCGCTTGAA 59.131 38.462 0.00 0.00 37.90 2.69
36 37 6.015434 TGCTATATGAATAGTCTTCCGCTTGA 60.015 38.462 0.00 0.00 37.90 3.02
37 38 6.159293 TGCTATATGAATAGTCTTCCGCTTG 58.841 40.000 0.00 0.00 37.90 4.01
38 39 6.346477 TGCTATATGAATAGTCTTCCGCTT 57.654 37.500 0.00 0.00 37.90 4.68
39 40 5.984695 TGCTATATGAATAGTCTTCCGCT 57.015 39.130 0.00 0.00 37.90 5.52
40 41 7.602517 AATTGCTATATGAATAGTCTTCCGC 57.397 36.000 0.00 0.00 37.90 5.54
68 69 6.701145 TTGCTATATGAATACCCGCAAAAA 57.299 33.333 0.00 0.00 33.56 1.94
69 70 6.892658 ATTGCTATATGAATACCCGCAAAA 57.107 33.333 0.00 0.00 39.04 2.44
70 71 6.892658 AATTGCTATATGAATACCCGCAAA 57.107 33.333 0.00 0.00 39.04 3.68
71 72 6.488344 TCAAATTGCTATATGAATACCCGCAA 59.512 34.615 0.00 0.00 39.76 4.85
72 73 6.000840 TCAAATTGCTATATGAATACCCGCA 58.999 36.000 0.00 0.00 0.00 5.69
73 74 6.494893 TCAAATTGCTATATGAATACCCGC 57.505 37.500 0.00 0.00 0.00 6.13
74 75 7.390440 TCCTTCAAATTGCTATATGAATACCCG 59.610 37.037 0.00 0.00 31.92 5.28
75 76 8.635765 TCCTTCAAATTGCTATATGAATACCC 57.364 34.615 0.00 0.00 31.92 3.69
136 141 7.411912 CGGCTAAACCTCAATAATCATGATACG 60.412 40.741 9.04 0.00 35.61 3.06
143 149 4.703897 CTCCGGCTAAACCTCAATAATCA 58.296 43.478 0.00 0.00 35.61 2.57
161 167 3.631686 TGGGTTAATTTGATCATGCTCCG 59.368 43.478 0.00 0.00 0.00 4.63
166 172 4.799949 CGCTTGTGGGTTAATTTGATCATG 59.200 41.667 0.00 0.00 0.00 3.07
268 296 7.721399 AGCACTATGAAAAATATCTCCCGATTT 59.279 33.333 0.00 0.00 0.00 2.17
272 300 6.073003 GGAAGCACTATGAAAAATATCTCCCG 60.073 42.308 0.00 0.00 0.00 5.14
307 335 5.179368 CGCTTTTGTAGAGGAAGAACAATGA 59.821 40.000 0.00 0.00 33.44 2.57
308 336 5.179368 TCGCTTTTGTAGAGGAAGAACAATG 59.821 40.000 0.00 0.00 33.44 2.82
453 488 1.572941 GTCGCTTCGTTCCAAACCC 59.427 57.895 0.00 0.00 0.00 4.11
550 589 4.733725 TGGAGGGAAGGGGACGGG 62.734 72.222 0.00 0.00 0.00 5.28
566 605 3.086600 GAGGGTGGAGGGAGGCTG 61.087 72.222 0.00 0.00 0.00 4.85
585 624 0.603065 GTTTGGTGGTGGAGCATTCC 59.397 55.000 0.00 0.00 44.31 3.01
1081 1215 4.292178 GGATCTGAGGGCTCGGCG 62.292 72.222 0.00 0.00 35.96 6.46
1082 1216 2.049627 ATTGGATCTGAGGGCTCGGC 62.050 60.000 0.00 0.00 35.96 5.54
1083 1217 0.250209 CATTGGATCTGAGGGCTCGG 60.250 60.000 0.00 0.00 37.32 4.63
1084 1218 0.250209 CCATTGGATCTGAGGGCTCG 60.250 60.000 0.00 0.00 0.00 5.03
1085 1219 0.110104 CCCATTGGATCTGAGGGCTC 59.890 60.000 3.62 0.00 31.81 4.70
1086 1220 1.358830 CCCCATTGGATCTGAGGGCT 61.359 60.000 3.62 0.00 38.22 5.19
1087 1221 1.152368 CCCCATTGGATCTGAGGGC 59.848 63.158 3.62 0.00 38.22 5.19
1088 1222 0.995675 ACCCCCATTGGATCTGAGGG 60.996 60.000 3.62 7.58 39.29 4.30
1089 1223 0.184451 CACCCCCATTGGATCTGAGG 59.816 60.000 3.62 0.00 35.39 3.86
1205 1390 0.812549 GTCCAGAACTCGGAGGAGAC 59.187 60.000 10.23 4.93 43.27 3.36
1340 1526 0.249238 GGAAGCGATCAGAGCGACAT 60.249 55.000 13.41 0.00 40.04 3.06
1341 1527 1.139734 GGAAGCGATCAGAGCGACA 59.860 57.895 13.41 0.00 40.04 4.35
1344 1530 1.078759 AAACGGAAGCGATCAGAGCG 61.079 55.000 2.97 2.97 40.04 5.03
1370 1556 0.317770 GGAAGCGATCAGAGCGAGAG 60.318 60.000 13.41 0.00 40.04 3.20
1372 1558 1.656875 CGGAAGCGATCAGAGCGAG 60.657 63.158 13.41 0.00 40.04 5.03
1373 1559 1.934220 AACGGAAGCGATCAGAGCGA 61.934 55.000 13.41 0.00 40.04 4.93
1374 1560 1.078759 AAACGGAAGCGATCAGAGCG 61.079 55.000 2.97 2.97 40.04 5.03
1375 1561 0.647925 GAAACGGAAGCGATCAGAGC 59.352 55.000 0.00 0.00 0.00 4.09
1376 1562 1.281899 GGAAACGGAAGCGATCAGAG 58.718 55.000 0.00 0.00 0.00 3.35
1377 1563 0.108329 GGGAAACGGAAGCGATCAGA 60.108 55.000 0.00 0.00 0.00 3.27
1378 1564 1.090052 GGGGAAACGGAAGCGATCAG 61.090 60.000 0.00 0.00 0.00 2.90
1379 1565 1.078708 GGGGAAACGGAAGCGATCA 60.079 57.895 0.00 0.00 0.00 2.92
1380 1566 1.818363 GGGGGAAACGGAAGCGATC 60.818 63.158 0.00 0.00 0.00 3.69
1381 1567 2.271173 GGGGGAAACGGAAGCGAT 59.729 61.111 0.00 0.00 0.00 4.58
1382 1568 4.382320 CGGGGGAAACGGAAGCGA 62.382 66.667 0.00 0.00 0.00 4.93
1384 1570 4.717313 AGCGGGGGAAACGGAAGC 62.717 66.667 0.00 0.00 0.00 3.86
1385 1571 2.436115 GAGCGGGGGAAACGGAAG 60.436 66.667 0.00 0.00 0.00 3.46
1386 1572 2.926242 AGAGCGGGGGAAACGGAA 60.926 61.111 0.00 0.00 0.00 4.30
1387 1573 3.387947 GAGAGCGGGGGAAACGGA 61.388 66.667 0.00 0.00 0.00 4.69
1388 1574 4.814294 CGAGAGCGGGGGAAACGG 62.814 72.222 0.00 0.00 0.00 4.44
1400 1586 0.317770 GGAAGCGATCAGAGCGAGAG 60.318 60.000 13.41 0.00 40.04 3.20
1401 1587 1.730487 GGAAGCGATCAGAGCGAGA 59.270 57.895 13.41 0.00 40.04 4.04
1402 1588 1.656875 CGGAAGCGATCAGAGCGAG 60.657 63.158 13.41 0.00 40.04 5.03
1403 1589 1.934220 AACGGAAGCGATCAGAGCGA 61.934 55.000 13.41 0.00 40.04 4.93
1404 1590 1.078759 AAACGGAAGCGATCAGAGCG 61.079 55.000 2.97 2.97 40.04 5.03
1405 1591 0.647925 GAAACGGAAGCGATCAGAGC 59.352 55.000 0.00 0.00 0.00 4.09
1406 1592 1.281899 GGAAACGGAAGCGATCAGAG 58.718 55.000 0.00 0.00 0.00 3.35
1407 1593 0.108329 GGGAAACGGAAGCGATCAGA 60.108 55.000 0.00 0.00 0.00 3.27
1408 1594 1.090052 GGGGAAACGGAAGCGATCAG 61.090 60.000 0.00 0.00 0.00 2.90
1409 1595 1.078708 GGGGAAACGGAAGCGATCA 60.079 57.895 0.00 0.00 0.00 2.92
1410 1596 1.818363 GGGGGAAACGGAAGCGATC 60.818 63.158 0.00 0.00 0.00 3.69
1411 1597 2.271173 GGGGGAAACGGAAGCGAT 59.729 61.111 0.00 0.00 0.00 4.58
1412 1598 4.382320 CGGGGGAAACGGAAGCGA 62.382 66.667 0.00 0.00 0.00 4.93
1414 1600 4.717313 AGCGGGGGAAACGGAAGC 62.717 66.667 0.00 0.00 0.00 3.86
1415 1601 2.436115 GAGCGGGGGAAACGGAAG 60.436 66.667 0.00 0.00 0.00 3.46
1416 1602 2.926242 AGAGCGGGGGAAACGGAA 60.926 61.111 0.00 0.00 0.00 4.30
1417 1603 3.387947 GAGAGCGGGGGAAACGGA 61.388 66.667 0.00 0.00 0.00 4.69
1418 1604 4.814294 CGAGAGCGGGGGAAACGG 62.814 72.222 0.00 0.00 0.00 4.44
1430 1616 2.097038 CCCGAAGCAACAGCGAGAG 61.097 63.158 0.00 0.00 0.00 3.20
1525 1721 1.419374 CTCGAAGCAGCACGTAAACT 58.581 50.000 10.84 0.00 0.00 2.66
1541 1740 4.227134 CCCCGCCATCTGACCTCG 62.227 72.222 0.00 0.00 0.00 4.63
1585 1784 2.981400 AAAGACACAATAAACGCGGG 57.019 45.000 12.47 0.00 0.00 6.13
1647 1847 1.328279 CCCGCCTAAATTCCCATTCC 58.672 55.000 0.00 0.00 0.00 3.01
1663 1863 1.571919 CATTTCTACGAAGCTCCCCG 58.428 55.000 0.00 0.00 0.00 5.73
1717 1917 5.532557 TGATCACACAGTAAACTCAGTCAG 58.467 41.667 0.00 0.00 0.00 3.51
1754 1954 3.377439 TCCGTATATTGCAACGCACTAG 58.623 45.455 0.00 0.00 38.71 2.57
1835 2035 3.202906 TGTTCAACACAGTAGTCAAGCC 58.797 45.455 0.00 0.00 0.00 4.35
1930 2130 2.538222 TCCATTTGCATTGTCACCCAT 58.462 42.857 0.00 0.00 0.00 4.00
2076 2280 1.726853 AGCGTAAATGCAGGTCTCAC 58.273 50.000 0.00 0.00 37.31 3.51
2162 2369 9.630098 TGTTTACTACAAATCGGACTAAGTTAG 57.370 33.333 8.41 8.41 32.64 2.34
2222 2430 3.838317 TGTAGGCTCTTCATAGGTGTTGT 59.162 43.478 0.00 0.00 0.00 3.32
2224 2432 3.452627 CCTGTAGGCTCTTCATAGGTGTT 59.547 47.826 0.00 0.00 0.00 3.32
2232 2440 1.359474 AGGAGTCCTGTAGGCTCTTCA 59.641 52.381 12.07 0.00 37.98 3.02
2250 2458 1.463444 CCACGTCGCCTTTTTCTTAGG 59.537 52.381 0.00 0.00 35.80 2.69
2273 2483 2.096819 CCCGTGACATCCAATAAAACCG 59.903 50.000 0.00 0.00 0.00 4.44
2275 2485 3.128068 GGACCCGTGACATCCAATAAAAC 59.872 47.826 0.00 0.00 32.35 2.43
2291 2501 2.484287 AATTCCAGCTGTGGGACCCG 62.484 60.000 13.81 0.00 45.11 5.28
2295 2505 0.329261 CCTGAATTCCAGCTGTGGGA 59.671 55.000 13.81 0.00 45.11 4.37
2298 2508 0.682209 CCCCCTGAATTCCAGCTGTG 60.682 60.000 13.81 4.33 41.57 3.66
2299 2509 1.693640 CCCCCTGAATTCCAGCTGT 59.306 57.895 13.81 0.00 41.57 4.40
2320 2530 6.374417 TTCATAATCTCATACTAAGCCCCC 57.626 41.667 0.00 0.00 0.00 5.40
2321 2531 6.213600 TCCTTCATAATCTCATACTAAGCCCC 59.786 42.308 0.00 0.00 0.00 5.80
2322 2532 7.246171 TCCTTCATAATCTCATACTAAGCCC 57.754 40.000 0.00 0.00 0.00 5.19
2323 2533 9.377312 GATTCCTTCATAATCTCATACTAAGCC 57.623 37.037 0.00 0.00 31.86 4.35
2324 2534 9.935241 TGATTCCTTCATAATCTCATACTAAGC 57.065 33.333 0.00 0.00 34.95 3.09
2326 2536 9.914131 CGTGATTCCTTCATAATCTCATACTAA 57.086 33.333 0.00 0.00 36.54 2.24
2327 2537 9.078990 ACGTGATTCCTTCATAATCTCATACTA 57.921 33.333 0.00 0.00 36.54 1.82
2328 2538 7.957002 ACGTGATTCCTTCATAATCTCATACT 58.043 34.615 0.00 0.00 36.54 2.12
2329 2539 9.130312 GTACGTGATTCCTTCATAATCTCATAC 57.870 37.037 0.00 0.00 36.54 2.39
2330 2540 8.021396 CGTACGTGATTCCTTCATAATCTCATA 58.979 37.037 7.22 0.00 36.54 2.15
2331 2541 6.863645 CGTACGTGATTCCTTCATAATCTCAT 59.136 38.462 7.22 0.00 36.54 2.90
2332 2542 6.183360 ACGTACGTGATTCCTTCATAATCTCA 60.183 38.462 22.14 0.00 36.54 3.27
2333 2543 6.207213 ACGTACGTGATTCCTTCATAATCTC 58.793 40.000 22.14 0.00 36.54 2.75
2334 2544 6.145338 ACGTACGTGATTCCTTCATAATCT 57.855 37.500 22.14 0.00 36.54 2.40
2335 2545 6.581542 CCTACGTACGTGATTCCTTCATAATC 59.418 42.308 30.25 0.00 36.54 1.75
2352 2890 2.685850 ATGAAAGCCCACCTACGTAC 57.314 50.000 0.00 0.00 0.00 3.67
2404 3024 1.001181 ACACAACAATCAGCAATGGGC 59.999 47.619 0.00 0.00 45.30 5.36
2409 3029 3.947196 ACTCTGAACACAACAATCAGCAA 59.053 39.130 0.00 0.00 40.26 3.91
2603 3225 0.451783 GATTGGGTTGGTGATCGTGC 59.548 55.000 0.00 0.00 0.00 5.34
2687 3309 2.488153 GTGGCTCCAGTAACATGAAACC 59.512 50.000 0.00 0.00 0.00 3.27
2722 3344 5.815740 TCACGCCCTAAAAATCTCAGAATAC 59.184 40.000 0.00 0.00 0.00 1.89
2748 3370 3.771160 CTACGGGGGCAGCGAACT 61.771 66.667 0.00 0.00 0.00 3.01
2816 3438 0.249826 TCATTCACGTCACAGCAGCA 60.250 50.000 0.00 0.00 0.00 4.41
2837 3459 3.696051 GTGATATGCCCACATCACTTTGT 59.304 43.478 11.36 0.00 44.94 2.83
2967 4514 7.009631 CAGGAACTAATCATACAAGTTCTGTCG 59.990 40.741 12.61 0.00 45.40 4.35
3010 4558 3.245016 TGTGAGACCAATGAGCCAAAGAT 60.245 43.478 0.00 0.00 0.00 2.40
3029 4577 5.449041 GCACATACACATAACCCAGATTGTG 60.449 44.000 0.00 0.00 43.88 3.33
3366 4915 8.378565 TCTAGAGGAGCAGGGAAATATAAAATG 58.621 37.037 0.00 0.00 0.00 2.32
3485 5035 9.071221 CAAACAAGCATTTTAAAAGGAAAAACC 57.929 29.630 16.31 0.00 32.29 3.27
3553 5105 3.316588 CGTGATGTAGGTAGCATGACTCT 59.683 47.826 0.00 0.00 30.20 3.24
3655 5207 2.511659 AGCATAGCCGCATCAATGAAT 58.488 42.857 0.00 0.00 0.00 2.57
3824 5387 3.363341 TTTGAAGGAATTTGTGGTCGC 57.637 42.857 0.00 0.00 0.00 5.19
3872 5435 3.953775 AGAACACCAGGCCCACCG 61.954 66.667 0.00 0.00 42.76 4.94
3941 5504 9.157104 TCGTGATGATACAAAAACTATAAGCAA 57.843 29.630 0.00 0.00 0.00 3.91
3978 5541 6.623486 CATCATGTGAAGGAGTTGCATTAAA 58.377 36.000 0.00 0.00 0.00 1.52
3980 5543 4.096833 GCATCATGTGAAGGAGTTGCATTA 59.903 41.667 0.00 0.00 0.00 1.90
3991 5608 5.121105 TCAGAGTATTGGCATCATGTGAAG 58.879 41.667 0.00 0.00 0.00 3.02
4097 5728 8.655970 GTCACAATAAAGGTTTAAAATGGCATC 58.344 33.333 0.00 0.00 0.00 3.91
4149 5782 1.136695 CAAAGTTCAAACAGCCAGGCA 59.863 47.619 15.80 0.00 0.00 4.75
4225 5871 7.473366 ACATAGTTGTGTCTTACTATCTCACG 58.527 38.462 0.00 0.00 35.85 4.35
4233 5879 5.801531 TGGTGACATAGTTGTGTCTTACT 57.198 39.130 9.84 0.00 46.70 2.24
4364 6010 2.945668 GCAGGAAAGGAATATTGTCGCT 59.054 45.455 0.00 0.00 0.00 4.93
4460 6148 1.843368 CAATCAAGATGGGTGCCACT 58.157 50.000 0.00 0.00 35.80 4.00
4478 6174 4.157656 GCCAAACATGAGTAAGGTTATGCA 59.842 41.667 0.00 0.00 0.00 3.96
4511 6208 1.618343 AGGTTACCAGCATTTGCCAAC 59.382 47.619 3.51 0.00 43.38 3.77
4512 6209 2.008242 AGGTTACCAGCATTTGCCAA 57.992 45.000 3.51 0.00 43.38 4.52
4537 6234 2.039879 AGTAGGGCCTGTTTGGTTAGTG 59.960 50.000 18.53 0.00 38.35 2.74
4758 6455 7.550551 TGGATCAGAATAAGCAGAACAAGTAAG 59.449 37.037 0.00 0.00 0.00 2.34
4828 6525 7.766278 GGTATTTGAATCACTCATGTAGACACT 59.234 37.037 0.00 0.00 32.78 3.55
4902 6599 9.630098 CATTGAATGTCTTTAGCATTGTTTAGT 57.370 29.630 0.00 0.00 36.77 2.24
4917 6614 5.356190 CAGGTGCATCTTACATTGAATGTCT 59.644 40.000 14.91 0.00 43.67 3.41
5195 6894 9.965824 TTGTGAAGAAAAAGGAAATAATCTCAC 57.034 29.630 0.00 0.00 0.00 3.51
5223 6922 4.201910 ACCGGAATCATTGCTACATTTTCG 60.202 41.667 9.46 0.00 0.00 3.46
5315 7014 4.319694 GGCGTTAACTGTTCGGTGTTATTT 60.320 41.667 3.71 0.00 0.00 1.40
5324 7023 2.028404 GGAATACGGCGTTAACTGTTCG 59.972 50.000 21.24 0.00 0.00 3.95
5371 7070 5.187772 TCACAGCAGTCTCATTACTACCATT 59.812 40.000 0.00 0.00 0.00 3.16
5743 7455 7.581213 ATTAATTCAAAGCATATTCCGTCCA 57.419 32.000 0.00 0.00 0.00 4.02
5837 7557 2.860735 GTCATGGCGCAACTCTTACTAG 59.139 50.000 10.83 0.00 0.00 2.57
5847 7567 1.952990 TGAAAAGAAGTCATGGCGCAA 59.047 42.857 10.83 0.00 0.00 4.85
5851 7571 3.511146 TGGGAATGAAAAGAAGTCATGGC 59.489 43.478 0.00 0.00 35.87 4.40
5884 7604 6.017605 GGAGTCACAGATTTACTATGCCAATG 60.018 42.308 0.00 0.00 0.00 2.82
5909 7653 0.110056 GTTTCATGCTGACTGCCACG 60.110 55.000 1.50 0.00 42.00 4.94
6076 8305 1.714794 AGCTGTCGACAAAATCCGAG 58.285 50.000 20.49 6.26 35.31 4.63
6078 8307 3.785505 GCATAAGCTGTCGACAAAATCCG 60.786 47.826 20.49 7.79 37.91 4.18
6180 8409 6.240894 AGCATTGAAGGTTGAATCTTGACTA 58.759 36.000 0.00 0.00 0.00 2.59
6410 8642 7.751768 TTCCCTGAACAACAAAAACAAAATT 57.248 28.000 0.00 0.00 0.00 1.82
6459 8691 7.255625 AAGTCTTCCTTGCAAAAAGGATACTTC 60.256 37.037 19.18 6.96 44.56 3.01
6538 8773 8.314751 AGTACACATAAGCTTGTCATTAGACTT 58.685 33.333 9.86 0.00 45.20 3.01
6709 8949 9.912634 AAGTGTAAAATGTGATAATGAAACAGG 57.087 29.630 0.00 0.00 0.00 4.00
6775 9015 4.853468 TGGCATACCTGAAGAATGGTAA 57.147 40.909 0.00 0.00 41.48 2.85
7066 9306 5.440234 CAGGTATACTGCTGTACTGGTAG 57.560 47.826 5.50 2.93 40.97 3.18
7149 9548 2.218603 GGCTGAAAAACCTCTTGTCGA 58.781 47.619 0.00 0.00 0.00 4.20
7228 9627 6.083630 TGTTGAGTTCACGAAAGACAAAAAG 58.916 36.000 0.00 0.00 0.00 2.27
7293 9698 7.907389 AGTTTATAAGGCGGAATATGATCAGA 58.093 34.615 0.09 0.00 0.00 3.27
7294 9699 8.446273 CAAGTTTATAAGGCGGAATATGATCAG 58.554 37.037 0.09 0.00 0.00 2.90
7295 9700 7.936847 ACAAGTTTATAAGGCGGAATATGATCA 59.063 33.333 0.00 0.00 0.00 2.92
7296 9701 8.324163 ACAAGTTTATAAGGCGGAATATGATC 57.676 34.615 0.00 0.00 0.00 2.92
7297 9702 8.157476 AGACAAGTTTATAAGGCGGAATATGAT 58.843 33.333 0.00 0.00 0.00 2.45
7298 9703 7.441157 CAGACAAGTTTATAAGGCGGAATATGA 59.559 37.037 0.00 0.00 0.00 2.15
7308 9713 4.589908 ACCTGCCAGACAAGTTTATAAGG 58.410 43.478 0.00 0.00 0.00 2.69
7317 9722 2.787473 TCCAATACCTGCCAGACAAG 57.213 50.000 0.00 0.00 0.00 3.16
7325 9730 5.183904 ACTGTTGAAGAAATCCAATACCTGC 59.816 40.000 0.00 0.00 0.00 4.85
7436 9841 3.990959 AGTCTCACCTTCATTCCTTCC 57.009 47.619 0.00 0.00 0.00 3.46
7558 9964 9.586732 CCAGAATAACTTTTATATGGATGGGAA 57.413 33.333 4.95 0.00 0.00 3.97
7692 10098 4.177026 GTGATAGTATAAGCCTCCATGCG 58.823 47.826 0.00 0.00 36.02 4.73
7823 10230 9.255304 GTCAAAATAACAGTTTCAAGGCATTTA 57.745 29.630 0.00 0.00 0.00 1.40
7862 10285 4.586001 CCTGATAAAATGTGCCATAAGCCT 59.414 41.667 0.00 0.00 42.71 4.58
7863 10286 4.584325 TCCTGATAAAATGTGCCATAAGCC 59.416 41.667 0.00 0.00 42.71 4.35
7864 10287 5.772825 TCCTGATAAAATGTGCCATAAGC 57.227 39.130 0.00 0.00 44.14 3.09
7865 10288 8.509690 CACTATCCTGATAAAATGTGCCATAAG 58.490 37.037 0.00 0.00 0.00 1.73
7866 10289 7.448161 CCACTATCCTGATAAAATGTGCCATAA 59.552 37.037 0.00 0.00 0.00 1.90
7867 10290 6.942005 CCACTATCCTGATAAAATGTGCCATA 59.058 38.462 0.00 0.00 0.00 2.74
7868 10291 5.771666 CCACTATCCTGATAAAATGTGCCAT 59.228 40.000 0.00 0.00 0.00 4.40
7869 10292 5.104151 TCCACTATCCTGATAAAATGTGCCA 60.104 40.000 0.00 0.00 0.00 4.92
7870 10293 5.376625 TCCACTATCCTGATAAAATGTGCC 58.623 41.667 0.00 0.00 0.00 5.01
7871 10294 6.942532 TTCCACTATCCTGATAAAATGTGC 57.057 37.500 0.00 0.00 0.00 4.57
7872 10295 8.681486 TCATTCCACTATCCTGATAAAATGTG 57.319 34.615 0.00 0.00 0.00 3.21
7873 10296 9.699410 TTTCATTCCACTATCCTGATAAAATGT 57.301 29.630 0.00 0.00 0.00 2.71
7877 10300 9.135189 CCAATTTCATTCCACTATCCTGATAAA 57.865 33.333 0.00 0.00 0.00 1.40
7958 10381 5.359576 TGCCACATGGTATTAGAAAATGTCC 59.640 40.000 0.00 0.00 37.57 4.02
8141 10570 5.403466 GGCACAGCTGAAATTGAAAACTTAG 59.597 40.000 23.35 0.00 0.00 2.18
8160 10589 5.999205 ATTATTTTCATGTTCAGGGCACA 57.001 34.783 0.00 0.00 0.00 4.57
8229 10688 5.763204 GGATAAATTCTTCGTGGGAGCATAA 59.237 40.000 0.00 0.00 0.00 1.90
8230 10689 5.071788 AGGATAAATTCTTCGTGGGAGCATA 59.928 40.000 0.00 0.00 0.00 3.14
8231 10690 4.137543 GGATAAATTCTTCGTGGGAGCAT 58.862 43.478 0.00 0.00 0.00 3.79
8232 10691 3.199946 AGGATAAATTCTTCGTGGGAGCA 59.800 43.478 0.00 0.00 0.00 4.26
8233 10692 3.809905 AGGATAAATTCTTCGTGGGAGC 58.190 45.455 0.00 0.00 0.00 4.70
8234 10693 4.576463 CCAAGGATAAATTCTTCGTGGGAG 59.424 45.833 0.00 0.00 0.00 4.30
8236 10695 3.632145 CCCAAGGATAAATTCTTCGTGGG 59.368 47.826 6.05 6.05 0.00 4.61
8240 10699 7.283127 TGAGAATTCCCAAGGATAAATTCTTCG 59.717 37.037 17.37 0.00 44.39 3.79
8278 10754 8.513774 ACAAAGTAGTACTACTAGAACTGAAGC 58.486 37.037 30.89 3.41 44.96 3.86
8659 11135 7.232737 TCAGGCTATAAGCTTGCTATTGTACTA 59.767 37.037 9.86 0.00 46.46 1.82
8671 11147 3.947834 ACGCATTTTCAGGCTATAAGCTT 59.052 39.130 3.48 3.48 41.99 3.74
8672 11148 3.545703 ACGCATTTTCAGGCTATAAGCT 58.454 40.909 0.00 0.00 41.99 3.74
8673 11149 3.971032 ACGCATTTTCAGGCTATAAGC 57.029 42.857 0.00 0.00 41.46 3.09
8674 11150 4.335315 TCCAACGCATTTTCAGGCTATAAG 59.665 41.667 0.00 0.00 0.00 1.73
8675 11151 4.265893 TCCAACGCATTTTCAGGCTATAA 58.734 39.130 0.00 0.00 0.00 0.98
8676 11152 3.876914 CTCCAACGCATTTTCAGGCTATA 59.123 43.478 0.00 0.00 0.00 1.31
8677 11153 2.684881 CTCCAACGCATTTTCAGGCTAT 59.315 45.455 0.00 0.00 0.00 2.97
8678 11154 2.083774 CTCCAACGCATTTTCAGGCTA 58.916 47.619 0.00 0.00 0.00 3.93
8679 11155 0.883833 CTCCAACGCATTTTCAGGCT 59.116 50.000 0.00 0.00 0.00 4.58
8680 11156 0.733909 GCTCCAACGCATTTTCAGGC 60.734 55.000 0.00 0.00 0.00 4.85
8681 11157 0.597568 TGCTCCAACGCATTTTCAGG 59.402 50.000 0.00 0.00 34.44 3.86
8682 11158 1.666888 GGTGCTCCAACGCATTTTCAG 60.667 52.381 0.00 0.00 42.62 3.02
8683 11159 0.313672 GGTGCTCCAACGCATTTTCA 59.686 50.000 0.00 0.00 42.62 2.69
8813 11289 5.936686 AGTCAGAACATGAATGACACTTG 57.063 39.130 22.38 0.00 44.59 3.16
8814 11290 6.204301 CAGAAGTCAGAACATGAATGACACTT 59.796 38.462 22.38 13.20 44.59 3.16
8825 11320 4.202398 ACACCATGTCAGAAGTCAGAACAT 60.202 41.667 0.00 0.00 0.00 2.71
8871 11367 2.908073 GCTCTGGTTGTTGGGCGTG 61.908 63.158 0.00 0.00 0.00 5.34
9006 11503 1.138069 TCAAGAGTTCAGTTCACCGCA 59.862 47.619 0.00 0.00 0.00 5.69
9093 11590 1.327303 TGGAACAAAGTGTGCATCCC 58.673 50.000 0.00 0.00 36.24 3.85
9232 11970 4.575885 ACGTACATGCATGGTAAAGTTCT 58.424 39.130 29.41 8.64 0.00 3.01
9256 11994 3.397482 GAGTTGAGTTGCATGTCAGACT 58.603 45.455 1.31 0.78 0.00 3.24
9292 12030 4.423625 AAGGAGTACACAGCTGTTTCTT 57.576 40.909 18.94 10.44 0.00 2.52
9320 12058 6.655078 AAATCATGGAGTACACAGCTTTTT 57.345 33.333 0.00 0.00 0.00 1.94
9321 12059 6.655078 AAAATCATGGAGTACACAGCTTTT 57.345 33.333 0.00 0.00 0.00 2.27
9322 12060 6.265196 TGAAAAATCATGGAGTACACAGCTTT 59.735 34.615 0.00 0.00 0.00 3.51
9323 12061 5.769662 TGAAAAATCATGGAGTACACAGCTT 59.230 36.000 0.00 0.00 0.00 3.74
9324 12062 5.316167 TGAAAAATCATGGAGTACACAGCT 58.684 37.500 0.00 0.00 0.00 4.24
9325 12063 5.627499 TGAAAAATCATGGAGTACACAGC 57.373 39.130 0.00 0.00 0.00 4.40
9326 12064 6.313658 TCGATGAAAAATCATGGAGTACACAG 59.686 38.462 0.00 0.00 32.46 3.66
9359 12097 5.517037 ACTAAGCTTTCTTCAACGAATCG 57.483 39.130 3.20 0.00 33.85 3.34
9445 12186 4.112634 TCTGCTCAGCGTATTATTGTGTC 58.887 43.478 0.00 0.00 0.00 3.67
9583 12324 4.411256 AAGAAGGTGACGAGGTTAACAA 57.589 40.909 8.10 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.