Multiple sequence alignment - TraesCS3A01G321100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G321100 chr3A 100.000 5684 0 0 502 6185 564437140 564442823 0.000000e+00 10497.0
1 TraesCS3A01G321100 chr3A 100.000 216 0 0 1 216 564436639 564436854 3.470000e-107 399.0
2 TraesCS3A01G321100 chr3B 89.822 2702 119 57 502 3119 554120616 554117987 0.000000e+00 3323.0
3 TraesCS3A01G321100 chr3B 88.553 2053 125 44 3381 5387 554117989 554116001 0.000000e+00 2388.0
4 TraesCS3A01G321100 chr3B 92.099 405 23 7 5782 6185 554099176 554098780 4.190000e-156 562.0
5 TraesCS3A01G321100 chr3B 88.889 207 13 4 1 207 554121169 554120973 4.790000e-61 246.0
6 TraesCS3A01G321100 chr3B 87.222 180 11 4 5611 5790 554099737 554099570 1.760000e-45 195.0
7 TraesCS3A01G321100 chr3B 84.962 133 20 0 1475 1607 157377444 157377576 1.080000e-27 135.0
8 TraesCS3A01G321100 chr3B 77.941 204 38 5 1425 1627 157660754 157660951 3.030000e-23 121.0
9 TraesCS3A01G321100 chr3D 89.355 2715 139 80 502 3119 424354258 424351597 0.000000e+00 3275.0
10 TraesCS3A01G321100 chr3D 88.976 2041 102 52 3389 5359 424351587 424349600 0.000000e+00 2409.0
11 TraesCS3A01G321100 chr3D 87.728 603 35 16 5594 6185 424349386 424348812 0.000000e+00 667.0
12 TraesCS3A01G321100 chr3D 90.338 207 9 5 1 207 424354484 424354289 1.710000e-65 261.0
13 TraesCS3A01G321100 chr3D 80.105 191 33 4 1418 1607 105704986 105705172 3.010000e-28 137.0
14 TraesCS3A01G321100 chr3D 79.412 204 35 5 1425 1627 106737076 106737273 3.010000e-28 137.0
15 TraesCS3A01G321100 chr3D 78.922 204 36 5 1425 1627 105891860 105892057 1.400000e-26 132.0
16 TraesCS3A01G321100 chr3D 82.639 144 25 0 1465 1608 106315579 106315722 1.810000e-25 128.0
17 TraesCS3A01G321100 chr3D 76.650 197 26 16 3794 3980 64763365 64763551 2.370000e-14 91.6
18 TraesCS3A01G321100 chr7B 90.014 721 50 11 1178 1884 243910035 243910747 0.000000e+00 913.0
19 TraesCS3A01G321100 chr7B 84.309 427 38 10 1938 2348 243910739 243911152 2.090000e-104 390.0
20 TraesCS3A01G321100 chr7A 92.364 275 19 2 3109 3381 687826817 687826543 2.090000e-104 390.0
21 TraesCS3A01G321100 chr7A 92.364 275 18 3 3109 3381 627506592 627506865 7.520000e-104 388.0
22 TraesCS3A01G321100 chr2A 92.364 275 19 2 3109 3381 149284414 149284140 2.090000e-104 390.0
23 TraesCS3A01G321100 chr2A 92.364 275 19 2 3109 3381 416408586 416408860 2.090000e-104 390.0
24 TraesCS3A01G321100 chr1A 92.364 275 19 2 3109 3381 456700390 456700116 2.090000e-104 390.0
25 TraesCS3A01G321100 chr1A 92.000 275 20 2 3109 3381 73703544 73703270 9.730000e-103 385.0
26 TraesCS3A01G321100 chr1A 92.000 275 20 2 3109 3381 250101984 250102258 9.730000e-103 385.0
27 TraesCS3A01G321100 chr6A 92.000 275 20 2 3109 3381 64987931 64987657 9.730000e-103 385.0
28 TraesCS3A01G321100 chr5B 91.575 273 21 2 3116 3387 94680423 94680694 5.850000e-100 375.0
29 TraesCS3A01G321100 chr5B 88.636 132 13 2 1189 1319 321478283 321478413 6.420000e-35 159.0
30 TraesCS3A01G321100 chr2D 89.404 151 16 0 1169 1319 85408817 85408967 2.280000e-44 191.0
31 TraesCS3A01G321100 chr2D 87.919 149 18 0 1169 1317 84780430 84780578 6.370000e-40 176.0
32 TraesCS3A01G321100 chr5D 87.023 131 17 0 1189 1319 283110438 283110568 1.390000e-31 148.0
33 TraesCS3A01G321100 chr2B 89.655 116 12 0 1204 1319 137622556 137622671 1.390000e-31 148.0
34 TraesCS3A01G321100 chr2B 83.974 156 20 2 1169 1319 137349339 137349494 1.800000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G321100 chr3A 564436639 564442823 6184 False 5448.000000 10497 100.00000 1 6185 2 chr3A.!!$F1 6184
1 TraesCS3A01G321100 chr3B 554116001 554121169 5168 True 1985.666667 3323 89.08800 1 5387 3 chr3B.!!$R2 5386
2 TraesCS3A01G321100 chr3B 554098780 554099737 957 True 378.500000 562 89.66050 5611 6185 2 chr3B.!!$R1 574
3 TraesCS3A01G321100 chr3D 424348812 424354484 5672 True 1653.000000 3275 89.09925 1 6185 4 chr3D.!!$R1 6184
4 TraesCS3A01G321100 chr7B 243910035 243911152 1117 False 651.500000 913 87.16150 1178 2348 2 chr7B.!!$F1 1170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.033781 CCGGGTCACTTTTCCACGTA 59.966 55.0 0.00 0.00 0.00 3.57 F
561 628 0.038159 AGTTGAGTCTGCGCAGTACC 60.038 55.0 34.70 23.24 0.00 3.34 F
904 993 0.042731 TCCCGTTCATCCTCCTCCTT 59.957 55.0 0.00 0.00 0.00 3.36 F
2457 2674 0.099613 CGTCTGGTCGATCACTCAGG 59.900 60.0 0.00 0.00 0.00 3.86 F
2683 2908 0.251916 CAGCCTCATCAACCGGGTTA 59.748 55.0 12.95 1.91 0.00 2.85 F
3006 3246 0.458543 CCGTTGATCAGGTCCGTCTG 60.459 60.0 0.00 0.00 36.17 3.51 F
3809 4067 0.608856 TGCCGTACGTGGACTTCCTA 60.609 55.0 15.21 0.00 36.82 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2185 0.867753 CGAGCGAGGTCGAAATGGAG 60.868 60.000 18.34 0.00 42.85 3.86 R
2287 2492 0.933097 CAGCATACGTGTCATGAGCC 59.067 55.000 0.00 0.00 0.00 4.70 R
2694 2928 1.588404 CGACCGTGCACATGATTAGAC 59.412 52.381 18.64 0.00 0.00 2.59 R
3554 3809 0.179113 TGCATGCTCGATCGCTAACA 60.179 50.000 20.33 5.96 0.00 2.41 R
4003 4261 0.322546 GGGTGGGTTGACTTGGCTAG 60.323 60.000 0.00 0.00 0.00 3.42 R
4004 4262 0.770557 AGGGTGGGTTGACTTGGCTA 60.771 55.000 0.00 0.00 0.00 3.93 R
5250 5571 0.036732 AATCCTGCTCTTTGACGGCA 59.963 50.000 0.00 0.00 34.66 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 0.922626 ATCTCCCCCTCAAAGCTTCC 59.077 55.000 0.00 0.00 0.00 3.46
76 77 0.883833 AAAGCTTCCACAGATTGGCG 59.116 50.000 0.00 0.00 46.47 5.69
157 158 0.099968 CATGGCACGCAGGATGAAAG 59.900 55.000 0.00 0.00 39.69 2.62
173 174 0.106419 AAAGCCGGGTCACTTTTCCA 60.106 50.000 6.62 0.00 32.24 3.53
175 176 2.613506 GCCGGGTCACTTTTCCACG 61.614 63.158 2.18 0.00 0.00 4.94
176 177 1.227734 CCGGGTCACTTTTCCACGT 60.228 57.895 0.00 0.00 0.00 4.49
177 178 0.033781 CCGGGTCACTTTTCCACGTA 59.966 55.000 0.00 0.00 0.00 3.57
178 179 1.425412 CGGGTCACTTTTCCACGTAG 58.575 55.000 0.00 0.00 0.00 3.51
180 181 2.030007 CGGGTCACTTTTCCACGTAGTA 60.030 50.000 0.00 0.00 41.61 1.82
181 182 3.582780 GGGTCACTTTTCCACGTAGTAG 58.417 50.000 0.00 0.00 41.61 2.57
190 191 7.748241 CACTTTTCCACGTAGTAGTAGTAGAAC 59.252 40.741 0.00 0.00 41.61 3.01
207 208 1.128692 GAACTTGGATCGACAAAGCGG 59.871 52.381 0.00 0.00 0.00 5.52
209 210 1.982073 CTTGGATCGACAAAGCGGGC 61.982 60.000 0.00 0.00 0.00 6.13
210 211 3.564027 GGATCGACAAAGCGGGCG 61.564 66.667 0.00 0.00 0.00 6.13
211 212 2.508439 GATCGACAAAGCGGGCGA 60.508 61.111 6.48 6.48 37.17 5.54
212 213 2.509336 ATCGACAAAGCGGGCGAG 60.509 61.111 9.70 0.00 36.12 5.03
213 214 4.735132 TCGACAAAGCGGGCGAGG 62.735 66.667 0.00 0.00 0.00 4.63
214 215 4.735132 CGACAAAGCGGGCGAGGA 62.735 66.667 0.00 0.00 0.00 3.71
525 588 6.355638 CGATCTCCACGTTCATTTATTTAGC 58.644 40.000 0.00 0.00 0.00 3.09
526 589 6.019075 CGATCTCCACGTTCATTTATTTAGCA 60.019 38.462 0.00 0.00 0.00 3.49
527 590 6.662414 TCTCCACGTTCATTTATTTAGCAG 57.338 37.500 0.00 0.00 0.00 4.24
529 592 4.638421 TCCACGTTCATTTATTTAGCAGGG 59.362 41.667 0.00 0.00 0.00 4.45
533 596 5.296035 ACGTTCATTTATTTAGCAGGGTAGC 59.704 40.000 0.00 0.00 0.00 3.58
539 602 5.943349 TTATTTAGCAGGGTAGCAGTACA 57.057 39.130 0.00 0.00 36.85 2.90
553 620 2.734079 GCAGTACAAGAGTTGAGTCTGC 59.266 50.000 14.16 14.16 40.85 4.26
556 623 0.104855 ACAAGAGTTGAGTCTGCGCA 59.895 50.000 10.98 10.98 0.00 6.09
558 625 0.390860 AAGAGTTGAGTCTGCGCAGT 59.609 50.000 34.70 18.99 0.00 4.40
560 627 1.068194 AGAGTTGAGTCTGCGCAGTAC 60.068 52.381 34.70 28.43 0.00 2.73
561 628 0.038159 AGTTGAGTCTGCGCAGTACC 60.038 55.000 34.70 23.24 0.00 3.34
694 766 2.014857 GCCTCCGGACTTGTTTATTCC 58.985 52.381 0.00 0.00 0.00 3.01
748 820 4.740822 GGGCGGGCATGTTGGAGT 62.741 66.667 3.27 0.00 0.00 3.85
749 821 3.134127 GGCGGGCATGTTGGAGTC 61.134 66.667 0.00 0.00 0.00 3.36
826 901 2.689034 CCACCACCTCTCCCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
828 903 2.876858 ACCACCTCTCCCTCCCCT 60.877 66.667 0.00 0.00 0.00 4.79
830 905 2.443016 CACCTCTCCCTCCCCTCG 60.443 72.222 0.00 0.00 0.00 4.63
885 963 1.680651 CGCCTCACACCTCCTCTCT 60.681 63.158 0.00 0.00 0.00 3.10
886 964 1.662438 CGCCTCACACCTCCTCTCTC 61.662 65.000 0.00 0.00 0.00 3.20
889 967 1.000771 TCACACCTCCTCTCTCCCG 60.001 63.158 0.00 0.00 0.00 5.14
893 971 0.612174 CACCTCCTCTCTCCCGTTCA 60.612 60.000 0.00 0.00 0.00 3.18
897 986 0.631753 TCCTCTCTCCCGTTCATCCT 59.368 55.000 0.00 0.00 0.00 3.24
902 991 0.397254 TCTCCCGTTCATCCTCCTCC 60.397 60.000 0.00 0.00 0.00 4.30
904 993 0.042731 TCCCGTTCATCCTCCTCCTT 59.957 55.000 0.00 0.00 0.00 3.36
918 1007 2.037620 CTCCTTCATCCTCCCCTGCG 62.038 65.000 0.00 0.00 0.00 5.18
941 1041 6.114221 GAGTACATATCAGCTACTCGATCC 57.886 45.833 0.00 0.00 30.02 3.36
942 1042 5.811190 AGTACATATCAGCTACTCGATCCT 58.189 41.667 0.00 0.00 0.00 3.24
943 1043 5.878116 AGTACATATCAGCTACTCGATCCTC 59.122 44.000 0.00 0.00 0.00 3.71
944 1044 3.687212 ACATATCAGCTACTCGATCCTCG 59.313 47.826 0.00 0.00 42.10 4.63
1200 1300 2.674754 CCCTTGGCCGTGTACCAT 59.325 61.111 0.00 0.00 36.96 3.55
1343 1443 1.847506 TGGTGGTGGACATGAGCCT 60.848 57.895 0.00 0.00 0.00 4.58
1625 1729 4.171005 ACGTAGTACACACATACATGCAC 58.829 43.478 0.38 0.00 41.94 4.57
1646 1752 2.203252 CCCATCCATCAGCCACCG 60.203 66.667 0.00 0.00 0.00 4.94
1647 1753 2.203252 CCATCCATCAGCCACCGG 60.203 66.667 0.00 0.00 0.00 5.28
1652 1758 2.350895 CATCAGCCACCGGTTCCA 59.649 61.111 2.97 0.00 0.00 3.53
1689 1845 3.922910 TCTTCTCACACTGATCTGCTTG 58.077 45.455 0.00 0.00 0.00 4.01
1906 2074 5.645497 TCTCTCTTTCTTTCTTTATGCCTGC 59.355 40.000 0.00 0.00 0.00 4.85
1954 2128 8.012151 TGTTTAATAATCCGTTCGTTCGTTAA 57.988 30.769 0.00 0.00 0.00 2.01
2005 2183 2.706555 TATCTCGTGCGCCTTATCTG 57.293 50.000 4.18 0.00 0.00 2.90
2007 2185 2.202878 TCGTGCGCCTTATCTGCC 60.203 61.111 4.18 0.00 0.00 4.85
2011 2189 2.366393 TGCGCCTTATCTGCCTCCA 61.366 57.895 4.18 0.00 0.00 3.86
2015 2193 1.876156 CGCCTTATCTGCCTCCATTTC 59.124 52.381 0.00 0.00 0.00 2.17
2051 2240 1.227147 CGTGACGGGGCGATATGTT 60.227 57.895 0.00 0.00 0.00 2.71
2287 2492 1.019278 ACGTATGCCGACTGCTTTGG 61.019 55.000 0.00 0.00 42.00 3.28
2358 2563 1.208614 CTGGCAGCAGTCTTTTCGC 59.791 57.895 0.00 0.00 0.00 4.70
2393 2604 2.796735 CGTTTTGAAAAAGTCCACCCCG 60.797 50.000 0.00 0.00 0.00 5.73
2396 2607 0.547075 TGAAAAAGTCCACCCCGTGA 59.453 50.000 0.00 0.00 35.23 4.35
2400 2611 1.687563 AAAGTCCACCCCGTGAAAAG 58.312 50.000 0.00 0.00 35.23 2.27
2401 2612 0.549469 AAGTCCACCCCGTGAAAAGT 59.451 50.000 0.00 0.00 35.23 2.66
2402 2613 0.108019 AGTCCACCCCGTGAAAAGTC 59.892 55.000 0.00 0.00 35.23 3.01
2404 2615 0.841289 TCCACCCCGTGAAAAGTCTT 59.159 50.000 0.00 0.00 35.23 3.01
2405 2616 1.202722 TCCACCCCGTGAAAAGTCTTC 60.203 52.381 0.00 0.00 35.23 2.87
2406 2617 0.865769 CACCCCGTGAAAAGTCTTCG 59.134 55.000 0.00 0.00 35.23 3.79
2407 2618 0.466963 ACCCCGTGAAAAGTCTTCGT 59.533 50.000 0.00 0.00 0.00 3.85
2409 2620 1.145803 CCCGTGAAAAGTCTTCGTCC 58.854 55.000 0.00 0.00 0.00 4.79
2410 2621 1.539496 CCCGTGAAAAGTCTTCGTCCA 60.539 52.381 0.00 0.00 0.00 4.02
2411 2622 2.206750 CCGTGAAAAGTCTTCGTCCAA 58.793 47.619 0.00 0.00 0.00 3.53
2412 2623 2.610374 CCGTGAAAAGTCTTCGTCCAAA 59.390 45.455 0.00 0.00 0.00 3.28
2413 2624 3.250040 CCGTGAAAAGTCTTCGTCCAAAT 59.750 43.478 0.00 0.00 0.00 2.32
2414 2625 4.261031 CCGTGAAAAGTCTTCGTCCAAATT 60.261 41.667 0.00 0.00 0.00 1.82
2415 2626 5.049954 CCGTGAAAAGTCTTCGTCCAAATTA 60.050 40.000 0.00 0.00 0.00 1.40
2416 2627 6.423862 CGTGAAAAGTCTTCGTCCAAATTAA 58.576 36.000 0.00 0.00 0.00 1.40
2452 2669 0.666274 TTGTGCGTCTGGTCGATCAC 60.666 55.000 0.00 0.00 0.00 3.06
2453 2670 1.213013 GTGCGTCTGGTCGATCACT 59.787 57.895 0.00 0.00 0.00 3.41
2454 2671 0.798771 GTGCGTCTGGTCGATCACTC 60.799 60.000 0.00 0.00 0.00 3.51
2455 2672 1.241315 TGCGTCTGGTCGATCACTCA 61.241 55.000 0.00 0.00 0.00 3.41
2456 2673 0.524392 GCGTCTGGTCGATCACTCAG 60.524 60.000 0.00 0.00 0.00 3.35
2457 2674 0.099613 CGTCTGGTCGATCACTCAGG 59.900 60.000 0.00 0.00 0.00 3.86
2458 2675 1.178276 GTCTGGTCGATCACTCAGGT 58.822 55.000 0.00 0.00 0.00 4.00
2459 2676 1.133407 GTCTGGTCGATCACTCAGGTC 59.867 57.143 0.00 0.00 0.00 3.85
2460 2677 1.177401 CTGGTCGATCACTCAGGTCA 58.823 55.000 0.00 0.00 0.00 4.02
2492 2711 1.984026 CCCAGGTTGGTTGGCATCC 60.984 63.158 7.68 7.68 35.17 3.51
2551 2776 2.825861 TTGGTGGGTCTTCTTACGTC 57.174 50.000 0.00 0.00 0.00 4.34
2575 2800 2.259618 TGTTTAGCTCACGCGATCTTC 58.740 47.619 15.93 0.00 42.32 2.87
2640 2865 3.804786 TCCACGATAATAAACGGAGCA 57.195 42.857 0.00 0.00 0.00 4.26
2641 2866 3.713288 TCCACGATAATAAACGGAGCAG 58.287 45.455 0.00 0.00 0.00 4.24
2642 2867 3.131577 TCCACGATAATAAACGGAGCAGT 59.868 43.478 0.00 0.00 0.00 4.40
2678 2903 1.737838 TTAAGCAGCCTCATCAACCG 58.262 50.000 0.00 0.00 0.00 4.44
2681 2906 2.671070 CAGCCTCATCAACCGGGT 59.329 61.111 6.32 0.00 0.00 5.28
2682 2907 1.002134 CAGCCTCATCAACCGGGTT 60.002 57.895 6.59 6.59 0.00 4.11
2683 2908 0.251916 CAGCCTCATCAACCGGGTTA 59.748 55.000 12.95 1.91 0.00 2.85
2684 2909 0.541863 AGCCTCATCAACCGGGTTAG 59.458 55.000 12.95 6.27 0.00 2.34
2691 2925 4.435425 TCATCAACCGGGTTAGTAATTCG 58.565 43.478 12.95 0.00 0.00 3.34
2694 2928 3.995705 TCAACCGGGTTAGTAATTCGTTG 59.004 43.478 12.95 0.00 0.00 4.10
2756 2990 4.208686 CCGGGCGCTCTACTCCAC 62.209 72.222 5.36 0.00 0.00 4.02
2835 3075 1.246737 GGTTCGACTACGTGGAGGGT 61.247 60.000 5.70 0.00 40.69 4.34
3005 3245 0.898789 ACCGTTGATCAGGTCCGTCT 60.899 55.000 0.79 0.00 35.50 4.18
3006 3246 0.458543 CCGTTGATCAGGTCCGTCTG 60.459 60.000 0.00 0.00 36.17 3.51
3009 3249 1.546476 GTTGATCAGGTCCGTCTGTCT 59.454 52.381 0.00 0.00 36.25 3.41
3010 3250 1.177401 TGATCAGGTCCGTCTGTCTG 58.823 55.000 0.00 0.00 36.25 3.51
3036 3276 4.335584 CGCCGCCTCTCTCGATCC 62.336 72.222 0.00 0.00 0.00 3.36
3038 3278 3.665226 CCGCCTCTCTCGATCCCG 61.665 72.222 0.00 0.00 37.07 5.14
3046 3286 3.936453 CCTCTCTCGATCCCGATTACTAG 59.064 52.174 0.00 0.00 44.62 2.57
3124 3371 7.696992 TTAATTTCTGGTTTAGTTAGGCTGG 57.303 36.000 0.00 0.00 0.00 4.85
3125 3372 4.717279 TTTCTGGTTTAGTTAGGCTGGT 57.283 40.909 0.00 0.00 0.00 4.00
3126 3373 4.717279 TTCTGGTTTAGTTAGGCTGGTT 57.283 40.909 0.00 0.00 0.00 3.67
3127 3374 5.829062 TTCTGGTTTAGTTAGGCTGGTTA 57.171 39.130 0.00 0.00 0.00 2.85
3128 3375 6.382919 TTCTGGTTTAGTTAGGCTGGTTAT 57.617 37.500 0.00 0.00 0.00 1.89
3129 3376 7.499200 TTCTGGTTTAGTTAGGCTGGTTATA 57.501 36.000 0.00 0.00 0.00 0.98
3130 3377 7.120923 TCTGGTTTAGTTAGGCTGGTTATAG 57.879 40.000 0.00 0.00 0.00 1.31
3131 3378 6.670902 TCTGGTTTAGTTAGGCTGGTTATAGT 59.329 38.462 0.00 0.00 0.00 2.12
3132 3379 6.646267 TGGTTTAGTTAGGCTGGTTATAGTG 58.354 40.000 0.00 0.00 0.00 2.74
3133 3380 6.053650 GGTTTAGTTAGGCTGGTTATAGTGG 58.946 44.000 0.00 0.00 0.00 4.00
3134 3381 5.881923 TTAGTTAGGCTGGTTATAGTGGG 57.118 43.478 0.00 0.00 0.00 4.61
3135 3382 3.046374 AGTTAGGCTGGTTATAGTGGGG 58.954 50.000 0.00 0.00 0.00 4.96
3136 3383 3.043418 GTTAGGCTGGTTATAGTGGGGA 58.957 50.000 0.00 0.00 0.00 4.81
3137 3384 1.807814 AGGCTGGTTATAGTGGGGAG 58.192 55.000 0.00 0.00 0.00 4.30
3138 3385 1.009675 AGGCTGGTTATAGTGGGGAGT 59.990 52.381 0.00 0.00 0.00 3.85
3139 3386 2.249214 AGGCTGGTTATAGTGGGGAGTA 59.751 50.000 0.00 0.00 0.00 2.59
3140 3387 3.043418 GGCTGGTTATAGTGGGGAGTAA 58.957 50.000 0.00 0.00 0.00 2.24
3141 3388 3.181457 GGCTGGTTATAGTGGGGAGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
3142 3389 3.710165 GCTGGTTATAGTGGGGAGTAACT 59.290 47.826 0.00 0.00 0.00 2.24
3143 3390 4.163649 GCTGGTTATAGTGGGGAGTAACTT 59.836 45.833 0.00 0.00 0.00 2.66
3144 3391 5.364735 GCTGGTTATAGTGGGGAGTAACTTA 59.635 44.000 0.00 0.00 0.00 2.24
3145 3392 6.462628 GCTGGTTATAGTGGGGAGTAACTTAG 60.463 46.154 0.00 0.00 0.00 2.18
3146 3393 6.744822 TGGTTATAGTGGGGAGTAACTTAGA 58.255 40.000 0.00 0.00 0.00 2.10
3147 3394 6.608808 TGGTTATAGTGGGGAGTAACTTAGAC 59.391 42.308 0.00 0.00 0.00 2.59
3148 3395 6.838090 GGTTATAGTGGGGAGTAACTTAGACT 59.162 42.308 0.00 0.00 0.00 3.24
3149 3396 8.001292 GGTTATAGTGGGGAGTAACTTAGACTA 58.999 40.741 0.00 0.00 0.00 2.59
3150 3397 9.065798 GTTATAGTGGGGAGTAACTTAGACTAG 57.934 40.741 0.00 0.00 0.00 2.57
3151 3398 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
3152 3399 5.262804 AGTGGGGAGTAACTTAGACTAGTG 58.737 45.833 0.00 0.00 0.00 2.74
3153 3400 5.015515 GTGGGGAGTAACTTAGACTAGTGT 58.984 45.833 0.00 0.00 0.00 3.55
3154 3401 5.125257 GTGGGGAGTAACTTAGACTAGTGTC 59.875 48.000 0.00 0.00 43.22 3.67
3155 3402 5.222192 TGGGGAGTAACTTAGACTAGTGTCA 60.222 44.000 0.00 0.00 45.20 3.58
3156 3403 5.892686 GGGGAGTAACTTAGACTAGTGTCAT 59.107 44.000 0.00 0.00 45.20 3.06
3157 3404 6.183360 GGGGAGTAACTTAGACTAGTGTCATG 60.183 46.154 0.00 0.00 45.20 3.07
3158 3405 6.377712 GGGAGTAACTTAGACTAGTGTCATGT 59.622 42.308 0.00 0.00 45.20 3.21
3159 3406 7.555554 GGGAGTAACTTAGACTAGTGTCATGTA 59.444 40.741 0.00 0.00 45.20 2.29
3160 3407 9.122779 GGAGTAACTTAGACTAGTGTCATGTAT 57.877 37.037 0.00 0.00 45.20 2.29
3178 3425 8.478775 TCATGTATATGACACTAGCCTAAGTT 57.521 34.615 0.00 0.00 42.17 2.66
3179 3426 9.582648 TCATGTATATGACACTAGCCTAAGTTA 57.417 33.333 0.00 0.00 42.17 2.24
3180 3427 9.627395 CATGTATATGACACTAGCCTAAGTTAC 57.373 37.037 0.00 0.00 42.17 2.50
3181 3428 8.991783 TGTATATGACACTAGCCTAAGTTACT 57.008 34.615 0.00 0.00 31.20 2.24
3184 3431 6.712179 ATGACACTAGCCTAAGTTACTACC 57.288 41.667 0.00 0.00 0.00 3.18
3185 3432 5.824421 TGACACTAGCCTAAGTTACTACCT 58.176 41.667 0.00 0.00 0.00 3.08
3186 3433 6.251471 TGACACTAGCCTAAGTTACTACCTT 58.749 40.000 0.00 0.00 0.00 3.50
3187 3434 6.376581 TGACACTAGCCTAAGTTACTACCTTC 59.623 42.308 0.00 0.00 0.00 3.46
3188 3435 6.251471 ACACTAGCCTAAGTTACTACCTTCA 58.749 40.000 0.00 0.00 0.00 3.02
3189 3436 6.896307 ACACTAGCCTAAGTTACTACCTTCAT 59.104 38.462 0.00 0.00 0.00 2.57
3190 3437 8.057623 ACACTAGCCTAAGTTACTACCTTCATA 58.942 37.037 0.00 0.00 0.00 2.15
3191 3438 8.910944 CACTAGCCTAAGTTACTACCTTCATAA 58.089 37.037 0.00 0.00 0.00 1.90
3192 3439 9.657728 ACTAGCCTAAGTTACTACCTTCATAAT 57.342 33.333 0.00 0.00 0.00 1.28
3193 3440 9.915629 CTAGCCTAAGTTACTACCTTCATAATG 57.084 37.037 0.00 0.00 0.00 1.90
3194 3441 7.217906 AGCCTAAGTTACTACCTTCATAATGC 58.782 38.462 0.00 0.00 0.00 3.56
3195 3442 6.990349 GCCTAAGTTACTACCTTCATAATGCA 59.010 38.462 0.00 0.00 0.00 3.96
3196 3443 7.497909 GCCTAAGTTACTACCTTCATAATGCAA 59.502 37.037 0.00 0.00 0.00 4.08
3197 3444 9.391006 CCTAAGTTACTACCTTCATAATGCAAA 57.609 33.333 0.00 0.00 0.00 3.68
3199 3446 8.863872 AAGTTACTACCTTCATAATGCAAAGT 57.136 30.769 0.00 0.00 0.00 2.66
3200 3447 9.953565 AAGTTACTACCTTCATAATGCAAAGTA 57.046 29.630 0.00 0.00 0.00 2.24
3201 3448 9.953565 AGTTACTACCTTCATAATGCAAAGTAA 57.046 29.630 0.00 0.00 0.00 2.24
3202 3449 9.983804 GTTACTACCTTCATAATGCAAAGTAAC 57.016 33.333 0.00 0.00 39.37 2.50
3203 3450 9.727859 TTACTACCTTCATAATGCAAAGTAACA 57.272 29.630 0.00 0.00 0.00 2.41
3204 3451 8.630054 ACTACCTTCATAATGCAAAGTAACAA 57.370 30.769 0.00 0.00 0.00 2.83
3205 3452 9.073475 ACTACCTTCATAATGCAAAGTAACAAA 57.927 29.630 0.00 0.00 0.00 2.83
3206 3453 9.906660 CTACCTTCATAATGCAAAGTAACAAAA 57.093 29.630 0.00 0.00 0.00 2.44
3256 3503 9.944376 TTTATTAGCTTGTAGACTCATCTTGTT 57.056 29.630 0.00 0.00 36.29 2.83
3257 3504 9.944376 TTATTAGCTTGTAGACTCATCTTGTTT 57.056 29.630 0.00 0.00 36.29 2.83
3258 3505 8.854614 ATTAGCTTGTAGACTCATCTTGTTTT 57.145 30.769 0.00 0.00 36.29 2.43
3259 3506 6.551385 AGCTTGTAGACTCATCTTGTTTTG 57.449 37.500 0.00 0.00 36.29 2.44
3260 3507 6.291377 AGCTTGTAGACTCATCTTGTTTTGA 58.709 36.000 0.00 0.00 36.29 2.69
3261 3508 6.767902 AGCTTGTAGACTCATCTTGTTTTGAA 59.232 34.615 0.00 0.00 36.29 2.69
3262 3509 7.283127 AGCTTGTAGACTCATCTTGTTTTGAAA 59.717 33.333 0.00 0.00 36.29 2.69
3263 3510 7.915397 GCTTGTAGACTCATCTTGTTTTGAAAA 59.085 33.333 0.00 0.00 36.29 2.29
3264 3511 9.443283 CTTGTAGACTCATCTTGTTTTGAAAAG 57.557 33.333 0.00 0.00 36.29 2.27
3265 3512 7.417612 TGTAGACTCATCTTGTTTTGAAAAGC 58.582 34.615 0.00 0.00 36.29 3.51
3266 3513 5.514279 AGACTCATCTTGTTTTGAAAAGCG 58.486 37.500 0.00 0.00 0.00 4.68
3267 3514 4.044426 ACTCATCTTGTTTTGAAAAGCGC 58.956 39.130 0.00 0.00 0.00 5.92
3268 3515 4.202050 ACTCATCTTGTTTTGAAAAGCGCT 60.202 37.500 2.64 2.64 0.00 5.92
3269 3516 5.008613 ACTCATCTTGTTTTGAAAAGCGCTA 59.991 36.000 12.05 0.00 0.00 4.26
3270 3517 6.012658 TCATCTTGTTTTGAAAAGCGCTAT 57.987 33.333 12.05 1.76 0.00 2.97
3271 3518 5.858049 TCATCTTGTTTTGAAAAGCGCTATG 59.142 36.000 12.05 5.94 0.00 2.23
3272 3519 5.181690 TCTTGTTTTGAAAAGCGCTATGT 57.818 34.783 12.05 0.00 0.00 2.29
3273 3520 5.587289 TCTTGTTTTGAAAAGCGCTATGTT 58.413 33.333 12.05 5.31 0.00 2.71
3274 3521 6.730175 TCTTGTTTTGAAAAGCGCTATGTTA 58.270 32.000 12.05 0.00 0.00 2.41
3275 3522 6.635239 TCTTGTTTTGAAAAGCGCTATGTTAC 59.365 34.615 12.05 4.18 0.00 2.50
3276 3523 5.822278 TGTTTTGAAAAGCGCTATGTTACA 58.178 33.333 12.05 6.97 0.00 2.41
3277 3524 5.912396 TGTTTTGAAAAGCGCTATGTTACAG 59.088 36.000 12.05 0.00 0.00 2.74
3278 3525 5.682943 TTTGAAAAGCGCTATGTTACAGT 57.317 34.783 12.05 0.00 0.00 3.55
3279 3526 6.788684 TTTGAAAAGCGCTATGTTACAGTA 57.211 33.333 12.05 0.00 0.00 2.74
3280 3527 6.788684 TTGAAAAGCGCTATGTTACAGTAA 57.211 33.333 12.05 0.00 0.00 2.24
3281 3528 6.160664 TGAAAAGCGCTATGTTACAGTAAC 57.839 37.500 12.05 15.58 39.11 2.50
3314 3561 9.169592 TGTTACCACCTCTTATTAATTACTTGC 57.830 33.333 0.00 0.00 0.00 4.01
3315 3562 9.392259 GTTACCACCTCTTATTAATTACTTGCT 57.608 33.333 0.00 0.00 0.00 3.91
3317 3564 8.959705 ACCACCTCTTATTAATTACTTGCTAC 57.040 34.615 0.00 0.00 0.00 3.58
3318 3565 8.545472 ACCACCTCTTATTAATTACTTGCTACA 58.455 33.333 0.00 0.00 0.00 2.74
3319 3566 9.561069 CCACCTCTTATTAATTACTTGCTACAT 57.439 33.333 0.00 0.00 0.00 2.29
3340 3587 7.832503 ACATAAGCAATAATTTTTGGAGTGC 57.167 32.000 10.14 0.59 0.00 4.40
3341 3588 6.531240 ACATAAGCAATAATTTTTGGAGTGCG 59.469 34.615 10.14 0.00 35.70 5.34
3342 3589 3.253230 AGCAATAATTTTTGGAGTGCGC 58.747 40.909 0.00 0.00 35.70 6.09
3343 3590 3.056607 AGCAATAATTTTTGGAGTGCGCT 60.057 39.130 9.73 0.00 35.70 5.92
3344 3591 4.157656 AGCAATAATTTTTGGAGTGCGCTA 59.842 37.500 9.73 0.00 35.70 4.26
3345 3592 5.043248 GCAATAATTTTTGGAGTGCGCTAT 58.957 37.500 9.73 0.00 0.00 2.97
3346 3593 5.051508 GCAATAATTTTTGGAGTGCGCTATG 60.052 40.000 9.73 0.00 0.00 2.23
3347 3594 5.835113 ATAATTTTTGGAGTGCGCTATGT 57.165 34.783 9.73 0.00 0.00 2.29
3348 3595 4.519540 AATTTTTGGAGTGCGCTATGTT 57.480 36.364 9.73 0.00 0.00 2.71
3349 3596 5.637006 AATTTTTGGAGTGCGCTATGTTA 57.363 34.783 9.73 0.00 0.00 2.41
3350 3597 4.413495 TTTTTGGAGTGCGCTATGTTAC 57.587 40.909 9.73 0.00 0.00 2.50
3351 3598 3.328382 TTTGGAGTGCGCTATGTTACT 57.672 42.857 9.73 1.27 0.00 2.24
3352 3599 4.459390 TTTGGAGTGCGCTATGTTACTA 57.541 40.909 9.73 0.00 0.00 1.82
3353 3600 4.459390 TTGGAGTGCGCTATGTTACTAA 57.541 40.909 9.73 0.00 0.00 2.24
3354 3601 3.777478 TGGAGTGCGCTATGTTACTAAC 58.223 45.455 9.73 0.00 0.00 2.34
3355 3602 3.446161 TGGAGTGCGCTATGTTACTAACT 59.554 43.478 9.73 0.00 0.00 2.24
3356 3603 4.641541 TGGAGTGCGCTATGTTACTAACTA 59.358 41.667 9.73 0.00 0.00 2.24
3357 3604 5.125900 TGGAGTGCGCTATGTTACTAACTAA 59.874 40.000 9.73 0.00 0.00 2.24
3358 3605 5.686397 GGAGTGCGCTATGTTACTAACTAAG 59.314 44.000 9.73 0.04 0.00 2.18
3359 3606 6.205101 AGTGCGCTATGTTACTAACTAAGT 57.795 37.500 9.73 0.00 42.62 2.24
3360 3607 6.628185 AGTGCGCTATGTTACTAACTAAGTT 58.372 36.000 9.73 0.00 39.80 2.66
3361 3608 7.765307 AGTGCGCTATGTTACTAACTAAGTTA 58.235 34.615 9.73 0.00 39.80 2.24
3362 3609 7.699812 AGTGCGCTATGTTACTAACTAAGTTAC 59.300 37.037 9.73 0.00 39.80 2.50
3363 3610 7.699812 GTGCGCTATGTTACTAACTAAGTTACT 59.300 37.037 9.73 0.00 38.33 2.24
3364 3611 7.912250 TGCGCTATGTTACTAACTAAGTTACTC 59.088 37.037 9.73 0.00 38.33 2.59
3365 3612 8.127954 GCGCTATGTTACTAACTAAGTTACTCT 58.872 37.037 0.00 0.00 38.33 3.24
3366 3613 9.649024 CGCTATGTTACTAACTAAGTTACTCTC 57.351 37.037 0.71 0.00 38.33 3.20
3375 3622 9.962809 ACTAACTAAGTTACTCTCACTATGACT 57.037 33.333 0.00 0.00 33.35 3.41
3378 3625 8.441312 ACTAAGTTACTCTCACTATGACTAGC 57.559 38.462 0.00 0.00 0.00 3.42
3379 3626 6.702716 AAGTTACTCTCACTATGACTAGCC 57.297 41.667 0.00 0.00 0.00 3.93
3398 3649 2.547211 GCCTTATGTACTGCTGCTGATG 59.453 50.000 13.69 0.00 0.00 3.07
3459 3711 4.120589 GCATTTGGAGTAGGTAGCACTAC 58.879 47.826 0.00 0.00 42.83 2.73
3512 3767 1.583495 CCCACATGCAGAGCACACTG 61.583 60.000 0.00 0.00 43.04 3.66
3514 3769 1.303074 ACATGCAGAGCACACTGGG 60.303 57.895 0.00 0.00 43.04 4.45
3554 3809 7.040340 CCATACGTACCACTAGATCTCAATTCT 60.040 40.741 0.00 0.00 0.00 2.40
3570 3825 2.871182 TTCTGTTAGCGATCGAGCAT 57.129 45.000 21.57 3.45 40.15 3.79
3654 3910 4.933400 GCATGAATTGAATTGCCAAGTCTT 59.067 37.500 6.44 0.00 40.54 3.01
3660 3916 5.528043 TTGAATTGCCAAGTCTTTGCTTA 57.472 34.783 6.44 0.00 32.79 3.09
3662 3918 5.911752 TGAATTGCCAAGTCTTTGCTTAAA 58.088 33.333 6.44 0.00 32.79 1.52
3663 3919 6.344500 TGAATTGCCAAGTCTTTGCTTAAAA 58.656 32.000 6.44 0.00 32.79 1.52
3692 3950 7.388224 GGAGTAAAAAGGAAGAGAGAAAATCGT 59.612 37.037 0.00 0.00 0.00 3.73
3694 3952 6.561737 AAAAAGGAAGAGAGAAAATCGTCC 57.438 37.500 0.36 0.36 43.29 4.79
3705 3963 7.762159 AGAGAGAAAATCGTCCAAGTCTAAATC 59.238 37.037 0.00 0.00 0.00 2.17
3785 4043 2.586635 GGCACGGTGTTCACGACA 60.587 61.111 10.24 0.00 35.42 4.35
3809 4067 0.608856 TGCCGTACGTGGACTTCCTA 60.609 55.000 15.21 0.00 36.82 2.94
4001 4259 3.568538 CATGAACAAGCACAAGTAAGCC 58.431 45.455 0.00 0.00 0.00 4.35
4002 4260 2.649190 TGAACAAGCACAAGTAAGCCA 58.351 42.857 0.00 0.00 0.00 4.75
4003 4261 2.357637 TGAACAAGCACAAGTAAGCCAC 59.642 45.455 0.00 0.00 0.00 5.01
4004 4262 2.348411 ACAAGCACAAGTAAGCCACT 57.652 45.000 0.00 0.00 40.05 4.00
4005 4263 3.485463 ACAAGCACAAGTAAGCCACTA 57.515 42.857 0.00 0.00 36.04 2.74
4006 4264 3.403038 ACAAGCACAAGTAAGCCACTAG 58.597 45.455 0.00 0.00 36.04 2.57
4007 4265 2.100605 AGCACAAGTAAGCCACTAGC 57.899 50.000 0.00 0.00 44.25 3.42
4018 4276 0.960861 GCCACTAGCCAAGTCAACCC 60.961 60.000 0.00 0.00 35.76 4.11
4024 4282 1.603739 GCCAAGTCAACCCACCCTC 60.604 63.158 0.00 0.00 0.00 4.30
4049 4307 0.250727 TGCTGCCCAAGTCAACCTAC 60.251 55.000 0.00 0.00 0.00 3.18
4053 4311 1.906574 TGCCCAAGTCAACCTACCTAG 59.093 52.381 0.00 0.00 0.00 3.02
4055 4313 3.102204 GCCCAAGTCAACCTACCTAGTA 58.898 50.000 0.00 0.00 0.00 1.82
4056 4314 3.516700 GCCCAAGTCAACCTACCTAGTAA 59.483 47.826 0.00 0.00 0.00 2.24
4059 4317 6.462628 GCCCAAGTCAACCTACCTAGTAATAG 60.463 46.154 0.00 0.00 0.00 1.73
4193 4492 4.114997 CCCGCCAAACCGCACATC 62.115 66.667 0.00 0.00 0.00 3.06
4194 4493 3.361158 CCGCCAAACCGCACATCA 61.361 61.111 0.00 0.00 0.00 3.07
4195 4494 2.126888 CGCCAAACCGCACATCAC 60.127 61.111 0.00 0.00 0.00 3.06
4196 4495 2.902419 CGCCAAACCGCACATCACA 61.902 57.895 0.00 0.00 0.00 3.58
4197 4496 1.586028 GCCAAACCGCACATCACAT 59.414 52.632 0.00 0.00 0.00 3.21
4211 4510 2.104859 CACATGCCAGCCAGAGACG 61.105 63.158 0.00 0.00 0.00 4.18
4507 4811 8.635765 ACAGGCTCTGTTCTGAATTTTATAAA 57.364 30.769 2.38 0.00 42.59 1.40
4590 4894 0.939419 GCGCCGACCGGTTATTTTAT 59.061 50.000 9.42 0.00 37.65 1.40
4715 5020 6.569179 TTCCTATGCTTAACACAAAAGGAC 57.431 37.500 7.31 0.00 34.67 3.85
4716 5021 4.693566 TCCTATGCTTAACACAAAAGGACG 59.306 41.667 0.00 0.00 31.73 4.79
4717 5022 3.915437 ATGCTTAACACAAAAGGACGG 57.085 42.857 0.00 0.00 0.00 4.79
4718 5023 2.920524 TGCTTAACACAAAAGGACGGA 58.079 42.857 0.00 0.00 0.00 4.69
4734 5039 3.195698 GACGCACCGGAATCAGCC 61.196 66.667 9.46 0.00 0.00 4.85
4752 5066 1.535462 GCCGCAGCTCTTTAACTGAAA 59.465 47.619 0.00 0.00 35.90 2.69
4753 5067 2.031157 GCCGCAGCTCTTTAACTGAAAA 60.031 45.455 0.00 0.00 35.90 2.29
4788 5102 4.008074 TCCTAGTCTGCTCCAACTTTTG 57.992 45.455 0.00 0.00 0.00 2.44
4789 5103 3.391296 TCCTAGTCTGCTCCAACTTTTGT 59.609 43.478 0.00 0.00 0.00 2.83
4792 5106 5.582665 CCTAGTCTGCTCCAACTTTTGTATC 59.417 44.000 0.00 0.00 0.00 2.24
4812 5126 2.362077 TCGAGCCGATTTGATGATCTGA 59.638 45.455 0.00 0.00 0.00 3.27
4813 5127 3.006217 TCGAGCCGATTTGATGATCTGAT 59.994 43.478 0.00 0.00 0.00 2.90
4857 5171 2.513753 TCTTTGTATTGGTGGTGCAGG 58.486 47.619 0.00 0.00 0.00 4.85
5152 5466 3.801997 CCGGGCAGGGCATCTTCT 61.802 66.667 0.00 0.00 35.97 2.85
5153 5467 2.273449 CGGGCAGGGCATCTTCTT 59.727 61.111 0.00 0.00 0.00 2.52
5154 5468 1.821332 CGGGCAGGGCATCTTCTTC 60.821 63.158 0.00 0.00 0.00 2.87
5197 5511 6.147821 GTCCGATTTTTGAGAAGACTGATTGA 59.852 38.462 0.00 0.00 0.00 2.57
5199 5513 6.073058 CCGATTTTTGAGAAGACTGATTGACA 60.073 38.462 0.00 0.00 0.00 3.58
5200 5514 7.361542 CCGATTTTTGAGAAGACTGATTGACAT 60.362 37.037 0.00 0.00 0.00 3.06
5201 5515 7.480855 CGATTTTTGAGAAGACTGATTGACATG 59.519 37.037 0.00 0.00 0.00 3.21
5202 5516 7.572523 TTTTTGAGAAGACTGATTGACATGT 57.427 32.000 0.00 0.00 0.00 3.21
5204 5518 7.658179 TTTGAGAAGACTGATTGACATGTAC 57.342 36.000 0.00 0.00 0.00 2.90
5254 5579 5.592286 CGTATGTACGTATGTAATTTGCCG 58.408 41.667 0.00 0.00 44.13 5.69
5258 5583 4.928020 TGTACGTATGTAATTTGCCGTCAA 59.072 37.500 0.00 0.00 30.94 3.18
5338 5669 2.372350 GCGCGCATTATCAACTTAACC 58.628 47.619 29.10 0.00 0.00 2.85
5347 5678 5.669164 TTATCAACTTAACCCCCAATTGC 57.331 39.130 0.00 0.00 0.00 3.56
5367 5698 4.575885 TGCTTGGTTATGTACAGAGGAAC 58.424 43.478 0.33 3.21 0.00 3.62
5387 5718 2.391821 GTCGCGTCGATGCAACTG 59.608 61.111 27.92 12.62 38.42 3.16
5388 5719 2.049526 TCGCGTCGATGCAACTGT 60.050 55.556 27.92 0.00 34.15 3.55
5389 5720 2.094539 CGCGTCGATGCAACTGTG 59.905 61.111 27.92 7.92 34.15 3.66
5390 5721 2.657757 CGCGTCGATGCAACTGTGT 61.658 57.895 27.92 0.00 34.15 3.72
5391 5722 1.569493 GCGTCGATGCAACTGTGTT 59.431 52.632 24.45 0.00 34.15 3.32
5392 5723 0.722469 GCGTCGATGCAACTGTGTTG 60.722 55.000 24.45 6.12 34.15 3.33
5393 5724 0.722469 CGTCGATGCAACTGTGTTGC 60.722 55.000 23.43 23.43 45.11 4.17
5394 5725 0.385974 GTCGATGCAACTGTGTTGCC 60.386 55.000 25.95 14.43 44.32 4.52
5445 5777 1.202770 AGGAACAGTTTTCCACCTCCG 60.203 52.381 10.65 0.00 41.00 4.63
5446 5778 1.476291 GGAACAGTTTTCCACCTCCGT 60.476 52.381 3.04 0.00 38.45 4.69
5450 5782 3.093814 ACAGTTTTCCACCTCCGTTTTT 58.906 40.909 0.00 0.00 0.00 1.94
5477 5869 7.256119 TTGGCAACCAGTATATGTTTCAAACAT 60.256 33.333 19.55 19.55 44.01 2.71
5489 5881 6.706055 TGTTTCAAACATAAACAACGCAAA 57.294 29.167 0.00 0.00 42.28 3.68
5490 5882 7.117241 TGTTTCAAACATAAACAACGCAAAA 57.883 28.000 0.00 0.00 42.28 2.44
5491 5883 7.572759 TGTTTCAAACATAAACAACGCAAAAA 58.427 26.923 0.00 0.00 42.28 1.94
5520 5916 2.793278 AAAACGAAACAGGGCATCAC 57.207 45.000 0.00 0.00 0.00 3.06
5521 5917 1.981256 AAACGAAACAGGGCATCACT 58.019 45.000 0.00 0.00 0.00 3.41
5522 5918 1.238439 AACGAAACAGGGCATCACTG 58.762 50.000 0.00 0.00 41.64 3.66
5526 5922 4.828409 ACAGGGCATCACTGTTGG 57.172 55.556 0.00 0.00 46.38 3.77
5527 5923 1.846261 ACAGGGCATCACTGTTGGT 59.154 52.632 0.00 0.00 46.38 3.67
5528 5924 0.538057 ACAGGGCATCACTGTTGGTG 60.538 55.000 0.00 0.00 46.38 4.17
5538 5934 2.865119 ACTGTTGGTGATGAGCATGA 57.135 45.000 0.00 0.00 0.00 3.07
5539 5935 2.430465 ACTGTTGGTGATGAGCATGAC 58.570 47.619 0.00 0.00 0.00 3.06
5540 5936 1.395954 CTGTTGGTGATGAGCATGACG 59.604 52.381 0.00 0.00 0.00 4.35
5541 5937 1.270785 TGTTGGTGATGAGCATGACGT 60.271 47.619 0.00 0.00 0.00 4.34
5542 5938 1.129251 GTTGGTGATGAGCATGACGTG 59.871 52.381 0.00 0.00 0.00 4.49
5543 5939 0.391528 TGGTGATGAGCATGACGTGG 60.392 55.000 0.00 0.00 0.00 4.94
5544 5940 1.091771 GGTGATGAGCATGACGTGGG 61.092 60.000 0.00 0.00 0.00 4.61
5545 5941 0.108186 GTGATGAGCATGACGTGGGA 60.108 55.000 0.00 0.00 0.00 4.37
5546 5942 0.832626 TGATGAGCATGACGTGGGAT 59.167 50.000 0.00 0.00 0.00 3.85
5547 5943 2.038659 TGATGAGCATGACGTGGGATA 58.961 47.619 0.00 0.00 0.00 2.59
5548 5944 2.036346 TGATGAGCATGACGTGGGATAG 59.964 50.000 0.00 0.00 0.00 2.08
5553 5949 5.261216 TGAGCATGACGTGGGATAGATATA 58.739 41.667 0.00 0.00 0.00 0.86
5583 5979 5.363868 TGTATACTCCAACAAGCAGAGCTAT 59.636 40.000 4.17 0.00 38.25 2.97
5584 5980 6.549736 TGTATACTCCAACAAGCAGAGCTATA 59.450 38.462 4.17 0.00 38.25 1.31
5585 5981 6.678568 ATACTCCAACAAGCAGAGCTATAT 57.321 37.500 0.00 0.00 38.25 0.86
5586 5982 7.782897 ATACTCCAACAAGCAGAGCTATATA 57.217 36.000 0.00 0.00 38.25 0.86
5587 5983 6.485830 ACTCCAACAAGCAGAGCTATATAA 57.514 37.500 0.00 0.00 38.25 0.98
5588 5984 6.889198 ACTCCAACAAGCAGAGCTATATAAA 58.111 36.000 0.00 0.00 38.25 1.40
5589 5985 7.338710 ACTCCAACAAGCAGAGCTATATAAAA 58.661 34.615 0.00 0.00 38.25 1.52
5590 5986 7.829211 ACTCCAACAAGCAGAGCTATATAAAAA 59.171 33.333 0.00 0.00 38.25 1.94
5642 6038 2.224670 TGGGAATAAGCGAACAAGTGGT 60.225 45.455 0.00 0.00 0.00 4.16
5674 6070 9.385902 GCATATGGCGTAATGCTTTATATATTG 57.614 33.333 4.56 0.00 45.43 1.90
5701 6097 9.530129 GTTTGCTTTTATATATACAGATGACGC 57.470 33.333 0.00 0.00 0.00 5.19
5773 6172 5.939764 TCTGTACTGCATGTCTTAGGAAT 57.060 39.130 0.00 0.00 0.00 3.01
5842 6649 2.672098 ACTCTGCGAGATAATGGTCCT 58.328 47.619 11.64 0.00 33.32 3.85
5843 6650 3.034635 ACTCTGCGAGATAATGGTCCTT 58.965 45.455 11.64 0.00 33.32 3.36
5844 6651 3.068873 ACTCTGCGAGATAATGGTCCTTC 59.931 47.826 11.64 0.00 33.32 3.46
5845 6652 2.365617 TCTGCGAGATAATGGTCCTTCC 59.634 50.000 0.00 0.00 0.00 3.46
5846 6653 2.366916 CTGCGAGATAATGGTCCTTCCT 59.633 50.000 0.00 0.00 37.07 3.36
5893 6700 2.945984 CCGACGTGTTGCTGCAAT 59.054 55.556 19.11 1.60 0.00 3.56
5926 6741 2.094894 GTCAATCAATCAGCCAGTGACG 59.905 50.000 0.00 0.00 38.28 4.35
5965 6780 0.321564 CAGGGACAGATGTTCGCCAA 60.322 55.000 0.00 0.00 0.00 4.52
5973 6788 0.375106 GATGTTCGCCAAGCTACTGC 59.625 55.000 0.00 0.00 40.05 4.40
6135 6953 0.032952 CCGGACAAGGACGACTTTGA 59.967 55.000 15.80 0.00 37.29 2.69
6138 6956 2.767505 GGACAAGGACGACTTTGACAT 58.232 47.619 15.80 0.00 37.29 3.06
6141 6959 2.158813 ACAAGGACGACTTTGACATGGT 60.159 45.455 15.80 0.00 37.29 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.011540 AAAGAAAGACGATCGCCTCC 57.988 50.000 16.60 5.35 0.00 4.30
7 8 2.094417 CCAAAAGAAAGACGATCGCCTC 59.906 50.000 16.60 6.30 0.00 4.70
8 9 2.076863 CCAAAAGAAAGACGATCGCCT 58.923 47.619 16.60 6.56 0.00 5.52
11 12 2.222596 CGAGCCAAAAGAAAGACGATCG 60.223 50.000 14.88 14.88 0.00 3.69
65 66 1.446907 AGAAGAAGCGCCAATCTGTG 58.553 50.000 2.29 0.00 0.00 3.66
76 77 1.596727 CGCATAGCTGGAAGAAGAAGC 59.403 52.381 0.00 0.00 34.07 3.86
101 102 5.128171 TGGAGCGGAATTCTTAAAGCTACTA 59.872 40.000 16.86 7.09 36.58 1.82
102 103 4.081087 TGGAGCGGAATTCTTAAAGCTACT 60.081 41.667 16.86 0.00 36.58 2.57
103 104 4.189231 TGGAGCGGAATTCTTAAAGCTAC 58.811 43.478 5.23 9.81 36.19 3.58
157 158 2.613506 CGTGGAAAAGTGACCCGGC 61.614 63.158 0.00 0.00 0.00 6.13
159 160 1.269936 ACTACGTGGAAAAGTGACCCG 60.270 52.381 5.70 0.00 0.00 5.28
173 174 6.478344 CGATCCAAGTTCTACTACTACTACGT 59.522 42.308 0.00 0.00 0.00 3.57
175 176 7.493971 TGTCGATCCAAGTTCTACTACTACTAC 59.506 40.741 0.00 0.00 0.00 2.73
176 177 7.559486 TGTCGATCCAAGTTCTACTACTACTA 58.441 38.462 0.00 0.00 0.00 1.82
177 178 6.413052 TGTCGATCCAAGTTCTACTACTACT 58.587 40.000 0.00 0.00 0.00 2.57
178 179 6.674694 TGTCGATCCAAGTTCTACTACTAC 57.325 41.667 0.00 0.00 0.00 2.73
179 180 7.627939 GCTTTGTCGATCCAAGTTCTACTACTA 60.628 40.741 0.00 0.00 0.00 1.82
180 181 6.585695 TTTGTCGATCCAAGTTCTACTACT 57.414 37.500 0.00 0.00 0.00 2.57
181 182 5.288952 GCTTTGTCGATCCAAGTTCTACTAC 59.711 44.000 0.00 0.00 0.00 2.73
190 191 1.982073 GCCCGCTTTGTCGATCCAAG 61.982 60.000 0.00 0.00 0.00 3.61
511 574 6.318900 ACTGCTACCCTGCTAAATAAATGAAC 59.681 38.462 0.00 0.00 0.00 3.18
520 583 3.835978 TCTTGTACTGCTACCCTGCTAAA 59.164 43.478 0.00 0.00 0.00 1.85
523 586 1.827969 CTCTTGTACTGCTACCCTGCT 59.172 52.381 0.00 0.00 0.00 4.24
525 588 3.258372 TCAACTCTTGTACTGCTACCCTG 59.742 47.826 0.00 0.00 0.00 4.45
526 589 3.507411 TCAACTCTTGTACTGCTACCCT 58.493 45.455 0.00 0.00 0.00 4.34
527 590 3.258622 ACTCAACTCTTGTACTGCTACCC 59.741 47.826 0.00 0.00 0.00 3.69
529 592 5.157781 CAGACTCAACTCTTGTACTGCTAC 58.842 45.833 0.00 0.00 0.00 3.58
533 596 2.983136 CGCAGACTCAACTCTTGTACTG 59.017 50.000 0.00 0.00 33.38 2.74
539 602 0.390860 ACTGCGCAGACTCAACTCTT 59.609 50.000 42.03 14.36 0.00 2.85
553 620 1.005037 TTCAGCCAGTGGTACTGCG 60.005 57.895 11.74 0.00 44.63 5.18
556 623 1.717032 TCACTTCAGCCAGTGGTACT 58.283 50.000 11.74 0.00 43.92 2.73
558 625 3.674997 GATTTCACTTCAGCCAGTGGTA 58.325 45.455 11.74 0.00 43.92 3.25
560 627 1.466167 CGATTTCACTTCAGCCAGTGG 59.534 52.381 4.20 4.20 43.92 4.00
561 628 1.466167 CCGATTTCACTTCAGCCAGTG 59.534 52.381 2.51 2.51 44.96 3.66
600 672 1.523095 GTCAGAATTAGTGGATCGCGC 59.477 52.381 0.00 0.00 0.00 6.86
683 755 0.455815 GCCGCCCAGGAATAAACAAG 59.544 55.000 0.00 0.00 45.00 3.16
731 803 4.740822 ACTCCAACATGCCCGCCC 62.741 66.667 0.00 0.00 0.00 6.13
735 807 0.908198 AGAGAGACTCCAACATGCCC 59.092 55.000 0.00 0.00 0.00 5.36
748 820 2.903784 CGAGGAGGATAGGAGAGAGAGA 59.096 54.545 0.00 0.00 0.00 3.10
749 821 2.027192 CCGAGGAGGATAGGAGAGAGAG 60.027 59.091 0.00 0.00 45.00 3.20
826 901 1.420430 TTTATAGTGGGAGCCCGAGG 58.580 55.000 0.29 0.00 39.42 4.63
828 903 2.901839 GGTATTTATAGTGGGAGCCCGA 59.098 50.000 0.29 0.00 39.42 5.14
830 905 2.614734 GCGGTATTTATAGTGGGAGCCC 60.615 54.545 0.00 0.00 0.00 5.19
885 963 0.042731 AAGGAGGAGGATGAACGGGA 59.957 55.000 0.00 0.00 0.00 5.14
886 964 0.466124 GAAGGAGGAGGATGAACGGG 59.534 60.000 0.00 0.00 0.00 5.28
889 967 3.044894 AGGATGAAGGAGGAGGATGAAC 58.955 50.000 0.00 0.00 0.00 3.18
893 971 1.132560 GGGAGGATGAAGGAGGAGGAT 60.133 57.143 0.00 0.00 0.00 3.24
897 986 0.030705 CAGGGGAGGATGAAGGAGGA 60.031 60.000 0.00 0.00 0.00 3.71
902 991 1.333636 ACTCGCAGGGGAGGATGAAG 61.334 60.000 16.39 0.00 38.39 3.02
904 993 0.755698 GTACTCGCAGGGGAGGATGA 60.756 60.000 16.39 0.00 38.39 2.92
918 1007 5.878116 AGGATCGAGTAGCTGATATGTACTC 59.122 44.000 0.00 0.00 39.46 2.59
941 1041 3.377485 TCTTTGGTCTCCTTACGATCGAG 59.623 47.826 24.34 9.65 0.00 4.04
942 1042 3.349927 TCTTTGGTCTCCTTACGATCGA 58.650 45.455 24.34 2.23 0.00 3.59
943 1043 3.777465 TCTTTGGTCTCCTTACGATCG 57.223 47.619 14.88 14.88 0.00 3.69
944 1044 4.740695 CGATTCTTTGGTCTCCTTACGATC 59.259 45.833 0.00 0.00 0.00 3.69
945 1045 4.401519 TCGATTCTTTGGTCTCCTTACGAT 59.598 41.667 0.00 0.00 0.00 3.73
946 1046 3.760151 TCGATTCTTTGGTCTCCTTACGA 59.240 43.478 0.00 0.00 0.00 3.43
947 1047 4.106029 TCGATTCTTTGGTCTCCTTACG 57.894 45.455 0.00 0.00 0.00 3.18
976 1076 3.013921 CCACTCTCTGTCCTCTGTCTAC 58.986 54.545 0.00 0.00 0.00 2.59
1608 1708 2.029244 GCTCGTGCATGTATGTGTGTAC 59.971 50.000 5.68 0.00 39.41 2.90
1622 1722 1.890979 CTGATGGATGGGCTCGTGC 60.891 63.158 0.00 0.00 38.76 5.34
1625 1729 2.281345 GGCTGATGGATGGGCTCG 60.281 66.667 0.00 0.00 0.00 5.03
1848 2016 2.029307 GCGTATGGGGAGGTGAGGAC 62.029 65.000 0.00 0.00 0.00 3.85
1849 2017 1.760875 GCGTATGGGGAGGTGAGGA 60.761 63.158 0.00 0.00 0.00 3.71
1850 2018 2.063979 TGCGTATGGGGAGGTGAGG 61.064 63.158 0.00 0.00 0.00 3.86
1906 2074 1.333636 AATGGCGAGGAGGAGAGTGG 61.334 60.000 0.00 0.00 0.00 4.00
2005 2183 2.174319 GCGAGGTCGAAATGGAGGC 61.174 63.158 2.94 0.00 43.02 4.70
2007 2185 0.867753 CGAGCGAGGTCGAAATGGAG 60.868 60.000 18.34 0.00 42.85 3.86
2011 2189 2.202756 GGCGAGCGAGGTCGAAAT 60.203 61.111 25.77 0.00 42.85 2.17
2123 2328 3.435671 CGTCTCCACCTAACAATGGAAAC 59.564 47.826 0.00 0.00 44.42 2.78
2287 2492 0.933097 CAGCATACGTGTCATGAGCC 59.067 55.000 0.00 0.00 0.00 4.70
2358 2563 8.922738 TTTTTCAAAACGCTACTAATAACGAG 57.077 30.769 0.00 0.00 0.00 4.18
2393 2604 8.623310 TTTTAATTTGGACGAAGACTTTTCAC 57.377 30.769 0.00 0.00 0.00 3.18
2416 2627 9.855021 AGACGCACAAGCTAATATTTTAATTTT 57.145 25.926 0.00 0.00 39.10 1.82
2452 2669 1.978473 CTGGACCACCTGACCTGAG 59.022 63.158 0.00 0.00 37.31 3.35
2453 2670 2.217038 GCTGGACCACCTGACCTGA 61.217 63.158 0.00 0.00 37.31 3.86
2454 2671 2.348998 GCTGGACCACCTGACCTG 59.651 66.667 0.00 0.00 37.31 4.00
2455 2672 2.930562 GGCTGGACCACCTGACCT 60.931 66.667 0.00 0.00 37.20 3.85
2456 2673 4.394712 CGGCTGGACCACCTGACC 62.395 72.222 10.28 0.00 39.57 4.02
2575 2800 3.248602 CGGGAAAGAATAGAATCTTGCGG 59.751 47.826 0.00 0.00 39.54 5.69
2640 2865 5.686124 GCTTAATCAGCTTAGATCACCCACT 60.686 44.000 0.00 0.00 46.27 4.00
2641 2866 4.513318 GCTTAATCAGCTTAGATCACCCAC 59.487 45.833 0.00 0.00 46.27 4.61
2642 2867 4.708177 GCTTAATCAGCTTAGATCACCCA 58.292 43.478 0.00 0.00 46.27 4.51
2675 2900 3.259123 AGACAACGAATTACTAACCCGGT 59.741 43.478 0.00 0.00 0.00 5.28
2678 2903 8.548721 CATGATTAGACAACGAATTACTAACCC 58.451 37.037 0.00 0.00 0.00 4.11
2681 2906 8.600625 GCACATGATTAGACAACGAATTACTAA 58.399 33.333 0.00 0.00 0.00 2.24
2682 2907 7.762159 TGCACATGATTAGACAACGAATTACTA 59.238 33.333 0.00 0.00 0.00 1.82
2683 2908 6.593770 TGCACATGATTAGACAACGAATTACT 59.406 34.615 0.00 0.00 0.00 2.24
2684 2909 6.682863 GTGCACATGATTAGACAACGAATTAC 59.317 38.462 13.17 0.00 0.00 1.89
2691 2925 2.742053 ACCGTGCACATGATTAGACAAC 59.258 45.455 18.64 0.00 0.00 3.32
2694 2928 1.588404 CGACCGTGCACATGATTAGAC 59.412 52.381 18.64 0.00 0.00 2.59
2756 2990 4.261888 CCGTGAACTCGGTGAAGG 57.738 61.111 7.08 0.00 44.77 3.46
3036 3276 4.215827 AGAGAATGCGGTACTAGTAATCGG 59.784 45.833 21.00 10.01 0.00 4.18
3038 3278 5.474189 AGGAGAGAATGCGGTACTAGTAATC 59.526 44.000 3.61 0.00 0.00 1.75
3046 3286 0.530870 GCCAGGAGAGAATGCGGTAC 60.531 60.000 0.00 0.00 0.00 3.34
3098 3345 9.403583 CCAGCCTAACTAAACCAGAAATTAATA 57.596 33.333 0.00 0.00 0.00 0.98
3106 3353 6.670902 ACTATAACCAGCCTAACTAAACCAGA 59.329 38.462 0.00 0.00 0.00 3.86
3111 3358 5.131475 CCCCACTATAACCAGCCTAACTAAA 59.869 44.000 0.00 0.00 0.00 1.85
3116 3363 3.311103 ACTCCCCACTATAACCAGCCTAA 60.311 47.826 0.00 0.00 0.00 2.69
3117 3364 2.249214 ACTCCCCACTATAACCAGCCTA 59.751 50.000 0.00 0.00 0.00 3.93
3118 3365 1.009675 ACTCCCCACTATAACCAGCCT 59.990 52.381 0.00 0.00 0.00 4.58
3119 3366 1.508256 ACTCCCCACTATAACCAGCC 58.492 55.000 0.00 0.00 0.00 4.85
3120 3367 3.710165 AGTTACTCCCCACTATAACCAGC 59.290 47.826 0.00 0.00 0.00 4.85
3121 3368 5.952347 AAGTTACTCCCCACTATAACCAG 57.048 43.478 0.00 0.00 0.00 4.00
3122 3369 6.608808 GTCTAAGTTACTCCCCACTATAACCA 59.391 42.308 0.00 0.00 0.00 3.67
3123 3370 6.838090 AGTCTAAGTTACTCCCCACTATAACC 59.162 42.308 0.00 0.00 0.00 2.85
3124 3371 7.894753 AGTCTAAGTTACTCCCCACTATAAC 57.105 40.000 0.00 0.00 0.00 1.89
3125 3372 8.785859 ACTAGTCTAAGTTACTCCCCACTATAA 58.214 37.037 0.00 0.00 0.00 0.98
3126 3373 8.216423 CACTAGTCTAAGTTACTCCCCACTATA 58.784 40.741 0.00 0.00 0.00 1.31
3127 3374 7.061688 CACTAGTCTAAGTTACTCCCCACTAT 58.938 42.308 0.00 0.00 0.00 2.12
3128 3375 6.012157 ACACTAGTCTAAGTTACTCCCCACTA 60.012 42.308 0.00 0.00 0.00 2.74
3129 3376 5.222296 ACACTAGTCTAAGTTACTCCCCACT 60.222 44.000 0.00 0.00 0.00 4.00
3130 3377 5.015515 ACACTAGTCTAAGTTACTCCCCAC 58.984 45.833 0.00 0.00 0.00 4.61
3131 3378 5.222192 TGACACTAGTCTAAGTTACTCCCCA 60.222 44.000 0.00 0.00 45.20 4.96
3132 3379 5.259632 TGACACTAGTCTAAGTTACTCCCC 58.740 45.833 0.00 0.00 45.20 4.81
3133 3380 6.377712 ACATGACACTAGTCTAAGTTACTCCC 59.622 42.308 0.00 0.00 45.20 4.30
3134 3381 7.393841 ACATGACACTAGTCTAAGTTACTCC 57.606 40.000 0.00 0.00 45.20 3.85
3153 3400 8.478775 AACTTAGGCTAGTGTCATATACATGA 57.521 34.615 0.00 0.00 41.10 3.07
3154 3401 9.627395 GTAACTTAGGCTAGTGTCATATACATG 57.373 37.037 0.00 0.00 41.10 3.21
3155 3402 9.589461 AGTAACTTAGGCTAGTGTCATATACAT 57.411 33.333 0.00 0.00 41.10 2.29
3156 3403 8.991783 AGTAACTTAGGCTAGTGTCATATACA 57.008 34.615 0.00 0.00 35.06 2.29
3158 3405 9.512588 GGTAGTAACTTAGGCTAGTGTCATATA 57.487 37.037 0.00 0.00 0.00 0.86
3159 3406 8.226112 AGGTAGTAACTTAGGCTAGTGTCATAT 58.774 37.037 0.00 0.00 0.00 1.78
3160 3407 7.580910 AGGTAGTAACTTAGGCTAGTGTCATA 58.419 38.462 0.00 0.00 0.00 2.15
3161 3408 6.433441 AGGTAGTAACTTAGGCTAGTGTCAT 58.567 40.000 0.00 0.00 0.00 3.06
3162 3409 5.824421 AGGTAGTAACTTAGGCTAGTGTCA 58.176 41.667 0.00 0.00 0.00 3.58
3163 3410 6.376581 TGAAGGTAGTAACTTAGGCTAGTGTC 59.623 42.308 0.00 0.00 0.00 3.67
3164 3411 6.251471 TGAAGGTAGTAACTTAGGCTAGTGT 58.749 40.000 0.00 0.00 0.00 3.55
3165 3412 6.770746 TGAAGGTAGTAACTTAGGCTAGTG 57.229 41.667 0.00 0.00 0.00 2.74
3166 3413 9.657728 ATTATGAAGGTAGTAACTTAGGCTAGT 57.342 33.333 0.00 0.00 0.00 2.57
3167 3414 9.915629 CATTATGAAGGTAGTAACTTAGGCTAG 57.084 37.037 0.00 0.00 0.00 3.42
3168 3415 8.365647 GCATTATGAAGGTAGTAACTTAGGCTA 58.634 37.037 0.00 0.00 0.00 3.93
3169 3416 7.147549 TGCATTATGAAGGTAGTAACTTAGGCT 60.148 37.037 0.00 0.00 0.00 4.58
3170 3417 6.990349 TGCATTATGAAGGTAGTAACTTAGGC 59.010 38.462 0.00 0.00 0.00 3.93
3171 3418 8.958119 TTGCATTATGAAGGTAGTAACTTAGG 57.042 34.615 0.00 0.00 0.00 2.69
3173 3420 9.953565 ACTTTGCATTATGAAGGTAGTAACTTA 57.046 29.630 0.00 0.00 0.00 2.24
3174 3421 8.863872 ACTTTGCATTATGAAGGTAGTAACTT 57.136 30.769 0.00 0.00 0.00 2.66
3175 3422 9.953565 TTACTTTGCATTATGAAGGTAGTAACT 57.046 29.630 0.00 0.00 0.00 2.24
3176 3423 9.983804 GTTACTTTGCATTATGAAGGTAGTAAC 57.016 33.333 13.90 13.90 38.55 2.50
3177 3424 9.727859 TGTTACTTTGCATTATGAAGGTAGTAA 57.272 29.630 0.00 0.00 0.00 2.24
3178 3425 9.727859 TTGTTACTTTGCATTATGAAGGTAGTA 57.272 29.630 0.00 0.00 0.00 1.82
3179 3426 8.630054 TTGTTACTTTGCATTATGAAGGTAGT 57.370 30.769 0.00 0.00 0.00 2.73
3180 3427 9.906660 TTTTGTTACTTTGCATTATGAAGGTAG 57.093 29.630 0.00 0.00 0.00 3.18
3230 3477 9.944376 AACAAGATGAGTCTACAAGCTAATAAA 57.056 29.630 0.00 0.00 33.30 1.40
3231 3478 9.944376 AAACAAGATGAGTCTACAAGCTAATAA 57.056 29.630 0.00 0.00 33.30 1.40
3232 3479 9.944376 AAAACAAGATGAGTCTACAAGCTAATA 57.056 29.630 0.00 0.00 33.30 0.98
3233 3480 8.725148 CAAAACAAGATGAGTCTACAAGCTAAT 58.275 33.333 0.00 0.00 33.30 1.73
3234 3481 7.931407 TCAAAACAAGATGAGTCTACAAGCTAA 59.069 33.333 0.00 0.00 33.30 3.09
3235 3482 7.441836 TCAAAACAAGATGAGTCTACAAGCTA 58.558 34.615 0.00 0.00 33.30 3.32
3236 3483 6.291377 TCAAAACAAGATGAGTCTACAAGCT 58.709 36.000 0.00 0.00 33.30 3.74
3237 3484 6.545504 TCAAAACAAGATGAGTCTACAAGC 57.454 37.500 0.00 0.00 33.30 4.01
3238 3485 9.443283 CTTTTCAAAACAAGATGAGTCTACAAG 57.557 33.333 0.00 0.00 33.30 3.16
3239 3486 7.915397 GCTTTTCAAAACAAGATGAGTCTACAA 59.085 33.333 0.00 0.00 33.30 2.41
3240 3487 7.417612 GCTTTTCAAAACAAGATGAGTCTACA 58.582 34.615 0.00 0.00 33.30 2.74
3241 3488 6.575201 CGCTTTTCAAAACAAGATGAGTCTAC 59.425 38.462 0.00 0.00 33.30 2.59
3242 3489 6.658831 CGCTTTTCAAAACAAGATGAGTCTA 58.341 36.000 0.00 0.00 33.30 2.59
3243 3490 5.514279 CGCTTTTCAAAACAAGATGAGTCT 58.486 37.500 0.00 0.00 35.82 3.24
3244 3491 4.147133 GCGCTTTTCAAAACAAGATGAGTC 59.853 41.667 0.00 0.00 0.00 3.36
3245 3492 4.044426 GCGCTTTTCAAAACAAGATGAGT 58.956 39.130 0.00 0.00 0.00 3.41
3246 3493 4.293415 AGCGCTTTTCAAAACAAGATGAG 58.707 39.130 2.64 0.00 0.00 2.90
3247 3494 4.305989 AGCGCTTTTCAAAACAAGATGA 57.694 36.364 2.64 0.00 0.00 2.92
3248 3495 5.630680 ACATAGCGCTTTTCAAAACAAGATG 59.369 36.000 18.68 10.96 0.00 2.90
3249 3496 5.772521 ACATAGCGCTTTTCAAAACAAGAT 58.227 33.333 18.68 0.00 0.00 2.40
3250 3497 5.181690 ACATAGCGCTTTTCAAAACAAGA 57.818 34.783 18.68 0.00 0.00 3.02
3251 3498 5.888412 AACATAGCGCTTTTCAAAACAAG 57.112 34.783 18.68 0.00 0.00 3.16
3252 3499 6.266323 TGTAACATAGCGCTTTTCAAAACAA 58.734 32.000 18.68 0.00 0.00 2.83
3253 3500 5.822278 TGTAACATAGCGCTTTTCAAAACA 58.178 33.333 18.68 9.37 0.00 2.83
3254 3501 5.912955 ACTGTAACATAGCGCTTTTCAAAAC 59.087 36.000 18.68 6.65 0.00 2.43
3255 3502 6.067263 ACTGTAACATAGCGCTTTTCAAAA 57.933 33.333 18.68 0.00 0.00 2.44
3256 3503 5.682943 ACTGTAACATAGCGCTTTTCAAA 57.317 34.783 18.68 0.00 0.00 2.69
3257 3504 6.203145 TGTTACTGTAACATAGCGCTTTTCAA 59.797 34.615 25.14 0.00 43.23 2.69
3258 3505 5.697178 TGTTACTGTAACATAGCGCTTTTCA 59.303 36.000 25.14 7.38 43.23 2.69
3259 3506 6.160664 TGTTACTGTAACATAGCGCTTTTC 57.839 37.500 25.14 2.12 43.23 2.29
3289 3536 9.392259 AGCAAGTAATTAATAAGAGGTGGTAAC 57.608 33.333 0.00 0.00 0.00 2.50
3292 3539 8.545472 TGTAGCAAGTAATTAATAAGAGGTGGT 58.455 33.333 0.00 0.00 0.00 4.16
3293 3540 8.958119 TGTAGCAAGTAATTAATAAGAGGTGG 57.042 34.615 0.00 0.00 0.00 4.61
3314 3561 9.023967 GCACTCCAAAAATTATTGCTTATGTAG 57.976 33.333 0.00 0.00 0.00 2.74
3315 3562 7.700234 CGCACTCCAAAAATTATTGCTTATGTA 59.300 33.333 0.00 0.00 0.00 2.29
3316 3563 6.531240 CGCACTCCAAAAATTATTGCTTATGT 59.469 34.615 0.00 0.00 0.00 2.29
3317 3564 6.508404 GCGCACTCCAAAAATTATTGCTTATG 60.508 38.462 0.30 0.00 0.00 1.90
3318 3565 5.519927 GCGCACTCCAAAAATTATTGCTTAT 59.480 36.000 0.30 0.00 0.00 1.73
3319 3566 4.862018 GCGCACTCCAAAAATTATTGCTTA 59.138 37.500 0.30 0.00 0.00 3.09
3320 3567 3.679502 GCGCACTCCAAAAATTATTGCTT 59.320 39.130 0.30 0.00 0.00 3.91
3321 3568 3.056607 AGCGCACTCCAAAAATTATTGCT 60.057 39.130 11.47 0.00 0.00 3.91
3322 3569 3.253230 AGCGCACTCCAAAAATTATTGC 58.747 40.909 11.47 0.00 0.00 3.56
3323 3570 6.035843 ACATAGCGCACTCCAAAAATTATTG 58.964 36.000 11.47 0.00 0.00 1.90
3324 3571 6.207691 ACATAGCGCACTCCAAAAATTATT 57.792 33.333 11.47 0.00 0.00 1.40
3325 3572 5.835113 ACATAGCGCACTCCAAAAATTAT 57.165 34.783 11.47 0.00 0.00 1.28
3326 3573 5.637006 AACATAGCGCACTCCAAAAATTA 57.363 34.783 11.47 0.00 0.00 1.40
3327 3574 4.519540 AACATAGCGCACTCCAAAAATT 57.480 36.364 11.47 0.00 0.00 1.82
3328 3575 4.700213 AGTAACATAGCGCACTCCAAAAAT 59.300 37.500 11.47 0.00 0.00 1.82
3329 3576 4.069304 AGTAACATAGCGCACTCCAAAAA 58.931 39.130 11.47 0.00 0.00 1.94
3330 3577 3.670625 AGTAACATAGCGCACTCCAAAA 58.329 40.909 11.47 0.00 0.00 2.44
3331 3578 3.328382 AGTAACATAGCGCACTCCAAA 57.672 42.857 11.47 0.00 0.00 3.28
3332 3579 4.081862 AGTTAGTAACATAGCGCACTCCAA 60.082 41.667 11.47 0.00 0.00 3.53
3333 3580 3.446161 AGTTAGTAACATAGCGCACTCCA 59.554 43.478 11.47 0.00 0.00 3.86
3334 3581 4.043037 AGTTAGTAACATAGCGCACTCC 57.957 45.455 11.47 0.00 0.00 3.85
3335 3582 6.264088 ACTTAGTTAGTAACATAGCGCACTC 58.736 40.000 11.47 0.00 34.56 3.51
3336 3583 6.205101 ACTTAGTTAGTAACATAGCGCACT 57.795 37.500 11.47 5.48 34.56 4.40
3337 3584 6.882458 AACTTAGTTAGTAACATAGCGCAC 57.118 37.500 11.47 0.00 35.54 5.34
3338 3585 7.765307 AGTAACTTAGTTAGTAACATAGCGCA 58.235 34.615 11.47 0.00 35.54 6.09
3339 3586 8.127954 AGAGTAACTTAGTTAGTAACATAGCGC 58.872 37.037 15.28 0.00 35.54 5.92
3340 3587 9.649024 GAGAGTAACTTAGTTAGTAACATAGCG 57.351 37.037 15.28 1.92 35.54 4.26
3349 3596 9.962809 AGTCATAGTGAGAGTAACTTAGTTAGT 57.037 33.333 11.79 11.79 39.32 2.24
3352 3599 8.895737 GCTAGTCATAGTGAGAGTAACTTAGTT 58.104 37.037 2.32 2.32 0.00 2.24
3353 3600 7.499895 GGCTAGTCATAGTGAGAGTAACTTAGT 59.500 40.741 0.00 0.00 0.00 2.24
3354 3601 7.717875 AGGCTAGTCATAGTGAGAGTAACTTAG 59.282 40.741 0.00 0.00 0.00 2.18
3355 3602 7.575505 AGGCTAGTCATAGTGAGAGTAACTTA 58.424 38.462 0.00 0.00 0.00 2.24
3356 3603 6.428295 AGGCTAGTCATAGTGAGAGTAACTT 58.572 40.000 0.00 0.00 0.00 2.66
3357 3604 6.008696 AGGCTAGTCATAGTGAGAGTAACT 57.991 41.667 0.00 0.00 0.00 2.24
3358 3605 6.702716 AAGGCTAGTCATAGTGAGAGTAAC 57.297 41.667 0.00 0.00 0.00 2.50
3359 3606 7.999545 ACATAAGGCTAGTCATAGTGAGAGTAA 59.000 37.037 0.00 0.00 0.00 2.24
3360 3607 7.519057 ACATAAGGCTAGTCATAGTGAGAGTA 58.481 38.462 0.00 0.00 0.00 2.59
3361 3608 6.369629 ACATAAGGCTAGTCATAGTGAGAGT 58.630 40.000 0.00 0.00 0.00 3.24
3362 3609 6.892658 ACATAAGGCTAGTCATAGTGAGAG 57.107 41.667 0.00 0.00 0.00 3.20
3363 3610 7.445707 CAGTACATAAGGCTAGTCATAGTGAGA 59.554 40.741 0.00 0.00 0.00 3.27
3364 3611 7.589395 CAGTACATAAGGCTAGTCATAGTGAG 58.411 42.308 0.00 0.00 0.00 3.51
3365 3612 6.016192 GCAGTACATAAGGCTAGTCATAGTGA 60.016 42.308 0.00 0.00 0.00 3.41
3366 3613 6.015856 AGCAGTACATAAGGCTAGTCATAGTG 60.016 42.308 0.00 0.00 34.25 2.74
3367 3614 6.015856 CAGCAGTACATAAGGCTAGTCATAGT 60.016 42.308 0.00 0.00 34.25 2.12
3368 3615 6.385843 CAGCAGTACATAAGGCTAGTCATAG 58.614 44.000 0.00 0.00 34.25 2.23
3369 3616 5.279006 GCAGCAGTACATAAGGCTAGTCATA 60.279 44.000 0.00 0.00 34.25 2.15
3370 3617 4.502259 GCAGCAGTACATAAGGCTAGTCAT 60.502 45.833 0.00 0.00 34.25 3.06
3371 3618 3.181475 GCAGCAGTACATAAGGCTAGTCA 60.181 47.826 0.00 0.00 34.25 3.41
3372 3619 3.068873 AGCAGCAGTACATAAGGCTAGTC 59.931 47.826 0.00 0.00 34.25 2.59
3373 3620 3.034635 AGCAGCAGTACATAAGGCTAGT 58.965 45.455 0.00 0.00 34.25 2.57
3374 3621 3.068732 TCAGCAGCAGTACATAAGGCTAG 59.931 47.826 0.00 0.00 34.25 3.42
3375 3622 3.031013 TCAGCAGCAGTACATAAGGCTA 58.969 45.455 0.00 0.00 34.25 3.93
3376 3623 1.833630 TCAGCAGCAGTACATAAGGCT 59.166 47.619 0.00 0.00 36.99 4.58
3377 3624 2.315925 TCAGCAGCAGTACATAAGGC 57.684 50.000 0.00 0.00 0.00 4.35
3378 3625 3.136763 CCATCAGCAGCAGTACATAAGG 58.863 50.000 0.00 0.00 0.00 2.69
3379 3626 3.136763 CCCATCAGCAGCAGTACATAAG 58.863 50.000 0.00 0.00 0.00 1.73
3468 3720 7.391554 GGTGCCATCATATACTAATCAACATGT 59.608 37.037 0.00 0.00 0.00 3.21
3512 3767 3.256136 CGTATGGGAAGATCTACAGACCC 59.744 52.174 0.00 5.38 37.99 4.46
3514 3769 5.048852 GGTACGTATGGGAAGATCTACAGAC 60.049 48.000 0.00 2.80 0.00 3.51
3554 3809 0.179113 TGCATGCTCGATCGCTAACA 60.179 50.000 20.33 5.96 0.00 2.41
3570 3825 9.865321 AAAGTAGTAGTCGATAAAATTAGTGCA 57.135 29.630 0.00 0.00 0.00 4.57
3622 3877 7.149973 GGCAATTCAATTCATGCACTACATAT 58.850 34.615 0.00 0.00 40.51 1.78
3623 3878 6.096564 TGGCAATTCAATTCATGCACTACATA 59.903 34.615 0.00 0.00 40.51 2.29
3634 3890 4.751098 GCAAAGACTTGGCAATTCAATTCA 59.249 37.500 18.25 0.00 31.40 2.57
3662 3918 9.475620 TTTTCTCTCTTCCTTTTTACTCCTTTT 57.524 29.630 0.00 0.00 0.00 2.27
3663 3919 9.647918 ATTTTCTCTCTTCCTTTTTACTCCTTT 57.352 29.630 0.00 0.00 0.00 3.11
3666 3922 7.388224 ACGATTTTCTCTCTTCCTTTTTACTCC 59.612 37.037 0.00 0.00 0.00 3.85
3669 3925 7.172703 TGGACGATTTTCTCTCTTCCTTTTTAC 59.827 37.037 0.00 0.00 33.41 2.01
3670 3926 7.221450 TGGACGATTTTCTCTCTTCCTTTTTA 58.779 34.615 0.00 0.00 33.41 1.52
3676 3934 4.570930 ACTTGGACGATTTTCTCTCTTCC 58.429 43.478 0.00 0.00 32.98 3.46
3677 3935 5.474825 AGACTTGGACGATTTTCTCTCTTC 58.525 41.667 0.00 0.00 0.00 2.87
3692 3950 2.301870 ACCAGCACGATTTAGACTTGGA 59.698 45.455 0.00 0.00 0.00 3.53
3694 3952 6.422776 AATTACCAGCACGATTTAGACTTG 57.577 37.500 0.00 0.00 0.00 3.16
3705 3963 4.480541 TGCAAAACATAATTACCAGCACG 58.519 39.130 0.00 0.00 0.00 5.34
3785 4043 2.282674 TCCACGTACGGCAGGTCT 60.283 61.111 21.06 0.00 0.00 3.85
4001 4259 1.523758 GTGGGTTGACTTGGCTAGTG 58.476 55.000 6.27 0.00 37.17 2.74
4002 4260 0.400594 GGTGGGTTGACTTGGCTAGT 59.599 55.000 0.00 0.00 40.71 2.57
4003 4261 0.322546 GGGTGGGTTGACTTGGCTAG 60.323 60.000 0.00 0.00 0.00 3.42
4004 4262 0.770557 AGGGTGGGTTGACTTGGCTA 60.771 55.000 0.00 0.00 0.00 3.93
4005 4263 2.069165 GAGGGTGGGTTGACTTGGCT 62.069 60.000 0.00 0.00 0.00 4.75
4006 4264 1.603739 GAGGGTGGGTTGACTTGGC 60.604 63.158 0.00 0.00 0.00 4.52
4007 4265 1.074951 GGAGGGTGGGTTGACTTGG 59.925 63.158 0.00 0.00 0.00 3.61
4018 4276 2.270986 GGCAGCAAAGTGGAGGGTG 61.271 63.158 0.00 0.00 0.00 4.61
4024 4282 1.108727 TGACTTGGGCAGCAAAGTGG 61.109 55.000 15.51 0.00 36.77 4.00
4168 4440 2.828549 GTTTGGCGGGCGGATCAT 60.829 61.111 0.00 0.00 0.00 2.45
4193 4492 2.104859 CGTCTCTGGCTGGCATGTG 61.105 63.158 3.74 0.85 0.00 3.21
4194 4493 2.267006 CGTCTCTGGCTGGCATGT 59.733 61.111 3.74 0.00 0.00 3.21
4195 4494 3.200593 GCGTCTCTGGCTGGCATG 61.201 66.667 3.74 1.07 0.00 4.06
4196 4495 4.827087 CGCGTCTCTGGCTGGCAT 62.827 66.667 3.74 0.00 0.00 4.40
4480 4784 2.376808 ATTCAGAACAGAGCCTGTCG 57.623 50.000 8.09 2.06 44.62 4.35
4507 4811 4.699522 GCGCCACTCGGGAGGTTT 62.700 66.667 0.00 0.00 40.01 3.27
4628 4932 1.234615 ACCAAATTCTGACGGTGCCG 61.235 55.000 9.29 9.29 46.03 5.69
4629 4933 0.958822 AACCAAATTCTGACGGTGCC 59.041 50.000 0.00 0.00 0.00 5.01
4630 4934 2.607038 GGAAACCAAATTCTGACGGTGC 60.607 50.000 0.00 0.00 0.00 5.01
4631 4935 2.884639 AGGAAACCAAATTCTGACGGTG 59.115 45.455 0.00 0.00 0.00 4.94
4632 4936 3.146847 GAGGAAACCAAATTCTGACGGT 58.853 45.455 0.00 0.00 0.00 4.83
4633 4937 3.189287 CAGAGGAAACCAAATTCTGACGG 59.811 47.826 0.00 0.00 37.96 4.79
4634 4938 3.365364 GCAGAGGAAACCAAATTCTGACG 60.365 47.826 4.14 0.00 37.96 4.35
4668 4972 2.173669 CAACGCATCCGGCCACTAG 61.174 63.158 2.24 0.00 40.31 2.57
4716 5021 3.195698 GCTGATTCCGGTGCGTCC 61.196 66.667 0.00 0.00 0.00 4.79
4717 5022 3.195698 GGCTGATTCCGGTGCGTC 61.196 66.667 0.00 0.00 0.00 5.19
4752 5066 6.564328 CAGACTAGGAAAAGCAACAGTTTTT 58.436 36.000 0.00 0.00 0.00 1.94
4753 5067 5.450550 GCAGACTAGGAAAAGCAACAGTTTT 60.451 40.000 0.00 0.00 0.00 2.43
4756 5070 3.142174 GCAGACTAGGAAAAGCAACAGT 58.858 45.455 0.00 0.00 0.00 3.55
4788 5102 4.325741 CAGATCATCAAATCGGCTCGATAC 59.674 45.833 9.94 0.00 46.30 2.24
4789 5103 4.218417 TCAGATCATCAAATCGGCTCGATA 59.782 41.667 9.94 0.00 46.30 2.92
4792 5106 2.747436 TCAGATCATCAAATCGGCTCG 58.253 47.619 0.00 0.00 0.00 5.03
4830 5144 5.126061 GCACCACCAATACAAAGATCAGAAT 59.874 40.000 0.00 0.00 0.00 2.40
4857 5171 3.462678 GAGCTCCTCGGGTCCCAC 61.463 72.222 9.12 0.00 0.00 4.61
5069 5383 3.394836 GCGCCCACCTCTTCTCCT 61.395 66.667 0.00 0.00 0.00 3.69
5197 5511 5.730296 ACACAGCTCTTTCTAGTACATGT 57.270 39.130 2.69 2.69 0.00 3.21
5199 5513 5.897050 GCTACACAGCTCTTTCTAGTACAT 58.103 41.667 0.00 0.00 44.93 2.29
5200 5514 5.312120 GCTACACAGCTCTTTCTAGTACA 57.688 43.478 0.00 0.00 44.93 2.90
5250 5571 0.036732 AATCCTGCTCTTTGACGGCA 59.963 50.000 0.00 0.00 34.66 5.69
5254 5579 5.112686 CACTACCTAATCCTGCTCTTTGAC 58.887 45.833 0.00 0.00 0.00 3.18
5258 5583 3.452627 CCACACTACCTAATCCTGCTCTT 59.547 47.826 0.00 0.00 0.00 2.85
5338 5669 3.766591 TGTACATAACCAAGCAATTGGGG 59.233 43.478 7.72 1.44 46.23 4.96
5347 5678 3.617263 GCGTTCCTCTGTACATAACCAAG 59.383 47.826 0.00 0.00 0.00 3.61
5389 5720 0.801251 GAGCACAGAGATGTGGCAAC 59.199 55.000 10.15 0.00 39.97 4.17
5390 5721 0.671472 CGAGCACAGAGATGTGGCAA 60.671 55.000 10.15 0.00 39.97 4.52
5391 5722 1.079612 CGAGCACAGAGATGTGGCA 60.080 57.895 10.15 0.00 39.97 4.92
5392 5723 2.459442 GCGAGCACAGAGATGTGGC 61.459 63.158 10.15 2.09 39.97 5.01
5393 5724 1.082679 CAGCGAGCACAGAGATGTGG 61.083 60.000 10.15 0.00 39.97 4.17
5394 5725 0.389556 ACAGCGAGCACAGAGATGTG 60.390 55.000 4.03 4.03 42.32 3.21
5426 5758 1.235724 CGGAGGTGGAAAACTGTTCC 58.764 55.000 0.00 0.00 39.03 3.62
5427 5759 1.963172 ACGGAGGTGGAAAACTGTTC 58.037 50.000 0.00 0.00 0.00 3.18
5450 5782 6.656632 TTGAAACATATACTGGTTGCCAAA 57.343 33.333 0.00 0.00 33.94 3.28
5452 5784 5.536538 TGTTTGAAACATATACTGGTTGCCA 59.463 36.000 6.66 0.00 33.94 4.92
5453 5785 6.019779 TGTTTGAAACATATACTGGTTGCC 57.980 37.500 6.66 0.00 33.94 4.52
5504 5900 0.108585 ACAGTGATGCCCTGTTTCGT 59.891 50.000 0.00 0.00 40.14 3.85
5505 5901 2.932663 ACAGTGATGCCCTGTTTCG 58.067 52.632 0.00 0.00 40.14 3.46
5519 5915 2.430465 GTCATGCTCATCACCAACAGT 58.570 47.619 0.00 0.00 0.00 3.55
5520 5916 1.395954 CGTCATGCTCATCACCAACAG 59.604 52.381 0.00 0.00 0.00 3.16
5521 5917 1.270785 ACGTCATGCTCATCACCAACA 60.271 47.619 0.00 0.00 0.00 3.33
5522 5918 1.129251 CACGTCATGCTCATCACCAAC 59.871 52.381 0.00 0.00 0.00 3.77
5523 5919 1.441738 CACGTCATGCTCATCACCAA 58.558 50.000 0.00 0.00 0.00 3.67
5524 5920 0.391528 CCACGTCATGCTCATCACCA 60.392 55.000 0.00 0.00 0.00 4.17
5525 5921 1.091771 CCCACGTCATGCTCATCACC 61.092 60.000 0.00 0.00 0.00 4.02
5526 5922 0.108186 TCCCACGTCATGCTCATCAC 60.108 55.000 0.00 0.00 0.00 3.06
5527 5923 0.832626 ATCCCACGTCATGCTCATCA 59.167 50.000 0.00 0.00 0.00 3.07
5528 5924 2.297315 TCTATCCCACGTCATGCTCATC 59.703 50.000 0.00 0.00 0.00 2.92
5529 5925 2.319844 TCTATCCCACGTCATGCTCAT 58.680 47.619 0.00 0.00 0.00 2.90
5530 5926 1.775385 TCTATCCCACGTCATGCTCA 58.225 50.000 0.00 0.00 0.00 4.26
5531 5927 4.727507 ATATCTATCCCACGTCATGCTC 57.272 45.455 0.00 0.00 0.00 4.26
5532 5928 6.609212 AGAATATATCTATCCCACGTCATGCT 59.391 38.462 0.00 0.00 36.32 3.79
5533 5929 6.810911 AGAATATATCTATCCCACGTCATGC 58.189 40.000 0.00 0.00 36.32 4.06
5534 5930 8.134261 CAGAGAATATATCTATCCCACGTCATG 58.866 40.741 0.00 0.00 38.96 3.07
5535 5931 7.836685 ACAGAGAATATATCTATCCCACGTCAT 59.163 37.037 0.00 0.00 38.96 3.06
5536 5932 7.175797 ACAGAGAATATATCTATCCCACGTCA 58.824 38.462 0.00 0.00 38.96 4.35
5537 5933 7.633193 ACAGAGAATATATCTATCCCACGTC 57.367 40.000 0.00 0.00 38.96 4.34
5553 5949 6.155221 TCTGCTTGTTGGAGTATACAGAGAAT 59.845 38.462 5.50 0.00 35.48 2.40
5564 5960 6.485830 TTATATAGCTCTGCTTGTTGGAGT 57.514 37.500 0.00 0.00 40.44 3.85
5589 5985 1.273327 GTGGCTGCATGGTAGCTTTTT 59.727 47.619 0.50 0.00 40.92 1.94
5590 5986 0.890683 GTGGCTGCATGGTAGCTTTT 59.109 50.000 0.50 0.00 40.92 2.27
5591 5987 0.251297 TGTGGCTGCATGGTAGCTTT 60.251 50.000 0.50 0.00 40.92 3.51
5592 5988 0.251297 TTGTGGCTGCATGGTAGCTT 60.251 50.000 0.50 0.00 40.92 3.74
5593 5989 0.679002 CTTGTGGCTGCATGGTAGCT 60.679 55.000 0.50 0.00 40.92 3.32
5594 5990 1.805254 CTTGTGGCTGCATGGTAGC 59.195 57.895 0.50 0.00 40.41 3.58
5595 5991 1.805254 GCTTGTGGCTGCATGGTAG 59.195 57.895 0.50 0.00 38.06 3.18
5596 5992 4.001248 GCTTGTGGCTGCATGGTA 57.999 55.556 0.50 0.00 38.06 3.25
5642 6038 4.944962 GCATTACGCCATATGCATTCTA 57.055 40.909 3.54 0.00 44.99 2.10
5685 6081 8.860128 CGTGTTAATTGCGTCATCTGTATATAT 58.140 33.333 0.00 0.00 0.00 0.86
5686 6082 8.077386 TCGTGTTAATTGCGTCATCTGTATATA 58.923 33.333 0.00 0.00 0.00 0.86
5687 6083 6.921307 TCGTGTTAATTGCGTCATCTGTATAT 59.079 34.615 0.00 0.00 0.00 0.86
5688 6084 6.197655 GTCGTGTTAATTGCGTCATCTGTATA 59.802 38.462 0.00 0.00 0.00 1.47
5689 6085 5.005394 GTCGTGTTAATTGCGTCATCTGTAT 59.995 40.000 0.00 0.00 0.00 2.29
5701 6097 4.961551 GGCATTACATCGTCGTGTTAATTG 59.038 41.667 5.92 2.36 33.62 2.32
5761 6160 6.660949 ACAGCTTTGCTTAATTCCTAAGACAT 59.339 34.615 0.00 0.00 39.66 3.06
5773 6172 6.295039 GTTGTGTAGTACAGCTTTGCTTAA 57.705 37.500 2.39 0.00 41.10 1.85
5842 6649 4.576873 TCGAAATGCTGTACACAAAAGGAA 59.423 37.500 0.00 0.00 0.00 3.36
5843 6650 4.130857 TCGAAATGCTGTACACAAAAGGA 58.869 39.130 0.00 0.00 0.00 3.36
5844 6651 4.481930 TCGAAATGCTGTACACAAAAGG 57.518 40.909 0.00 0.00 0.00 3.11
5845 6652 4.379793 GCTTCGAAATGCTGTACACAAAAG 59.620 41.667 0.00 0.00 0.00 2.27
5846 6653 4.036262 AGCTTCGAAATGCTGTACACAAAA 59.964 37.500 10.78 0.00 38.21 2.44
5893 6700 5.729510 TGATTGATTGACCAAGTGATACGA 58.270 37.500 0.00 0.00 0.00 3.43
5926 6741 0.169451 CGGCCCACGGATTTTGTAAC 59.831 55.000 0.00 0.00 39.42 2.50
5965 6780 2.046892 CCACTTGCGGCAGTAGCT 60.047 61.111 1.67 0.00 41.70 3.32
6046 6864 4.695993 TCCAATGGTGAGCGCGCA 62.696 61.111 35.10 10.65 0.00 6.09
6047 6865 3.869272 CTCCAATGGTGAGCGCGC 61.869 66.667 26.66 26.66 0.00 6.86
6048 6866 3.197790 CCTCCAATGGTGAGCGCG 61.198 66.667 0.00 0.00 0.00 6.86
6049 6867 2.825836 CCCTCCAATGGTGAGCGC 60.826 66.667 0.00 0.00 0.00 5.92
6051 6869 0.259938 ATTCCCCTCCAATGGTGAGC 59.740 55.000 2.45 0.00 0.00 4.26
6052 6870 3.951563 TTATTCCCCTCCAATGGTGAG 57.048 47.619 2.45 0.00 0.00 3.51
6053 6871 3.117169 CCATTATTCCCCTCCAATGGTGA 60.117 47.826 2.45 0.00 41.58 4.02
6118 6936 2.234300 TGTCAAAGTCGTCCTTGTCC 57.766 50.000 0.00 0.00 32.32 4.02
6155 6973 4.583866 TCGTGCGTGTGCTGAGCA 62.584 61.111 1.40 1.40 43.34 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.