Multiple sequence alignment - TraesCS3A01G320700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G320700 chr3A 100.000 7773 0 0 1 7773 563836761 563828989 0.000000e+00 14355.0
1 TraesCS3A01G320700 chr3A 81.362 778 126 15 1 769 566880668 566879901 3.990000e-172 616.0
2 TraesCS3A01G320700 chr3B 91.975 3352 188 45 789 4112 554986403 554989701 0.000000e+00 4625.0
3 TraesCS3A01G320700 chr3B 92.982 2750 93 24 4096 6784 554989730 554992440 0.000000e+00 3917.0
4 TraesCS3A01G320700 chr3B 89.943 696 36 12 7094 7767 554993655 554994338 0.000000e+00 867.0
5 TraesCS3A01G320700 chr3B 94.958 238 10 2 6867 7102 554992439 554992676 9.530000e-99 372.0
6 TraesCS3A01G320700 chr3B 96.503 143 5 0 7623 7765 554994398 554994540 3.630000e-58 237.0
7 TraesCS3A01G320700 chr3B 90.217 92 9 0 5154 5245 40626548 40626457 3.810000e-23 121.0
8 TraesCS3A01G320700 chr3B 95.833 48 1 1 7575 7621 554994329 554994376 8.360000e-10 76.8
9 TraesCS3A01G320700 chr3D 92.545 2723 93 29 4108 6784 424890863 424893521 0.000000e+00 3803.0
10 TraesCS3A01G320700 chr3D 92.451 2464 126 27 789 3235 424887352 424889772 0.000000e+00 3465.0
11 TraesCS3A01G320700 chr3D 91.944 931 44 9 6867 7773 424893520 424894443 0.000000e+00 1275.0
12 TraesCS3A01G320700 chr3D 94.194 775 43 2 1 774 118248858 118248085 0.000000e+00 1181.0
13 TraesCS3A01G320700 chr3D 93.661 489 23 6 3604 4089 424890321 424890804 0.000000e+00 725.0
14 TraesCS3A01G320700 chr3D 82.714 781 116 16 1 770 181102077 181102849 0.000000e+00 676.0
15 TraesCS3A01G320700 chr3D 94.393 214 11 1 3393 3605 424889769 424889982 2.090000e-85 327.0
16 TraesCS3A01G320700 chr5D 93.419 775 49 2 1 774 464805622 464804849 0.000000e+00 1147.0
17 TraesCS3A01G320700 chr5D 92.553 94 4 2 5153 5245 558147159 558147068 1.760000e-26 132.0
18 TraesCS3A01G320700 chr2B 91.226 775 65 3 2 774 771280203 771280976 0.000000e+00 1051.0
19 TraesCS3A01G320700 chr2B 83.028 218 24 7 993 1199 478101593 478101808 1.330000e-42 185.0
20 TraesCS3A01G320700 chr2B 91.489 94 8 0 6775 6868 496962087 496962180 6.330000e-26 130.0
21 TraesCS3A01G320700 chr2B 91.954 87 7 0 5154 5240 466212987 466213073 1.060000e-23 122.0
22 TraesCS3A01G320700 chr6A 87.960 706 80 5 2 704 562361966 562362669 0.000000e+00 828.0
23 TraesCS3A01G320700 chr7B 91.529 425 31 3 2636 3059 10282350 10282770 1.450000e-161 580.0
24 TraesCS3A01G320700 chr7B 90.435 115 9 2 2056 2168 10282234 10282348 4.860000e-32 150.0
25 TraesCS3A01G320700 chr7B 95.349 86 4 0 6783 6868 198554776 198554691 3.780000e-28 137.0
26 TraesCS3A01G320700 chr7B 92.473 93 7 0 5153 5245 659935174 659935082 4.890000e-27 134.0
27 TraesCS3A01G320700 chr4A 91.706 422 25 6 2639 3059 714405222 714404810 1.880000e-160 577.0
28 TraesCS3A01G320700 chr4A 92.632 95 6 1 6781 6875 167312877 167312784 1.360000e-27 135.0
29 TraesCS3A01G320700 chr4A 94.318 88 5 0 6782 6869 179474218 179474305 1.360000e-27 135.0
30 TraesCS3A01G320700 chr4A 93.548 62 4 0 2064 2125 714405358 714405297 8.300000e-15 93.5
31 TraesCS3A01G320700 chr1A 91.096 292 19 5 2635 2924 27397477 27397191 9.460000e-104 388.0
32 TraesCS3A01G320700 chr1A 94.444 108 6 0 2064 2171 27397582 27397475 4.820000e-37 167.0
33 TraesCS3A01G320700 chr1A 92.308 91 7 0 6782 6872 308950142 308950232 6.330000e-26 130.0
34 TraesCS3A01G320700 chr7D 83.217 429 28 12 2635 3059 568199652 568200040 3.450000e-93 353.0
35 TraesCS3A01G320700 chr7D 94.828 116 6 0 2056 2171 568199539 568199654 1.720000e-41 182.0
36 TraesCS3A01G320700 chr7A 93.617 94 6 0 6782 6875 643550144 643550237 2.920000e-29 141.0
37 TraesCS3A01G320700 chr7A 94.444 90 5 0 6780 6869 223532895 223532984 1.050000e-28 139.0
38 TraesCS3A01G320700 chr7A 95.000 80 4 0 5153 5232 696847287 696847208 8.190000e-25 126.0
39 TraesCS3A01G320700 chr2D 94.444 90 5 0 5153 5242 642818488 642818577 1.050000e-28 139.0
40 TraesCS3A01G320700 chr2D 81.757 148 23 2 7623 7769 45926506 45926650 3.810000e-23 121.0
41 TraesCS3A01G320700 chr2D 81.507 146 22 3 7623 7767 45948026 45948167 1.770000e-21 115.0
42 TraesCS3A01G320700 chr2D 82.353 136 21 1 7634 7769 45966780 45966912 1.770000e-21 115.0
43 TraesCS3A01G320700 chr2D 82.353 136 21 1 7634 7769 45975791 45975923 1.770000e-21 115.0
44 TraesCS3A01G320700 chr2D 81.618 136 22 1 7634 7769 45995458 45995590 8.250000e-20 110.0
45 TraesCS3A01G320700 chr4B 94.318 88 5 0 6781 6868 654129844 654129931 1.360000e-27 135.0
46 TraesCS3A01G320700 chr4B 91.579 95 7 1 6783 6876 286079485 286079579 6.330000e-26 130.0
47 TraesCS3A01G320700 chr4B 91.954 87 7 0 5154 5240 16044753 16044839 1.060000e-23 122.0
48 TraesCS3A01G320700 chr6D 88.889 63 4 3 1025 1084 277023446 277023384 3.010000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G320700 chr3A 563828989 563836761 7772 True 14355.000000 14355 100.0000 1 7773 1 chr3A.!!$R1 7772
1 TraesCS3A01G320700 chr3A 566879901 566880668 767 True 616.000000 616 81.3620 1 769 1 chr3A.!!$R2 768
2 TraesCS3A01G320700 chr3B 554986403 554994540 8137 False 1682.466667 4625 93.6990 789 7767 6 chr3B.!!$F1 6978
3 TraesCS3A01G320700 chr3D 424887352 424894443 7091 False 1919.000000 3803 92.9988 789 7773 5 chr3D.!!$F2 6984
4 TraesCS3A01G320700 chr3D 118248085 118248858 773 True 1181.000000 1181 94.1940 1 774 1 chr3D.!!$R1 773
5 TraesCS3A01G320700 chr3D 181102077 181102849 772 False 676.000000 676 82.7140 1 770 1 chr3D.!!$F1 769
6 TraesCS3A01G320700 chr5D 464804849 464805622 773 True 1147.000000 1147 93.4190 1 774 1 chr5D.!!$R1 773
7 TraesCS3A01G320700 chr2B 771280203 771280976 773 False 1051.000000 1051 91.2260 2 774 1 chr2B.!!$F4 772
8 TraesCS3A01G320700 chr6A 562361966 562362669 703 False 828.000000 828 87.9600 2 704 1 chr6A.!!$F1 702
9 TraesCS3A01G320700 chr7B 10282234 10282770 536 False 365.000000 580 90.9820 2056 3059 2 chr7B.!!$F1 1003
10 TraesCS3A01G320700 chr4A 714404810 714405358 548 True 335.250000 577 92.6270 2064 3059 2 chr4A.!!$R2 995
11 TraesCS3A01G320700 chr7D 568199539 568200040 501 False 267.500000 353 89.0225 2056 3059 2 chr7D.!!$F1 1003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 107 0.111253 CCCACTTTCCTGGCAAGAGT 59.889 55.000 13.11 0.0 0.00 3.24 F
641 646 0.398318 GGAGACAAGCACCAAGGACT 59.602 55.000 0.00 0.0 0.00 3.85 F
1390 1405 0.321671 TGGAGCTGTGTAAGTCTGCC 59.678 55.000 0.00 0.0 0.00 4.85 F
1391 1406 0.737715 GGAGCTGTGTAAGTCTGCCG 60.738 60.000 0.00 0.0 0.00 5.69 F
1407 1422 1.202830 TGCCGCTAGGAAACTCCAAAA 60.203 47.619 0.00 0.0 43.67 2.44 F
1718 1734 1.678101 GCTTGTTTGGCAGAAGAGTGT 59.322 47.619 7.06 0.0 0.00 3.55 F
3471 3544 0.954452 CAGAAGTTTGTCACCAGGCC 59.046 55.000 0.00 0.0 0.00 5.19 F
3924 4341 0.179000 CCCTACGATTGCAGCTCCTT 59.821 55.000 0.00 0.0 0.00 3.36 F
5354 5817 1.089920 CTGATTTTGGCTCTCCACCG 58.910 55.000 0.00 0.0 43.33 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1172 1183 0.466124 ATCTAGAAGTTCTGCCGGGC 59.534 55.000 15.90 13.32 0.00 6.13 R
1661 1677 1.202687 TGCCTCACAGAAGTTCAGTGG 60.203 52.381 23.43 15.58 35.03 4.00 R
3128 3200 1.632948 GCGAGGCCGAAAAGGTACAC 61.633 60.000 0.00 0.00 43.70 2.90 R
3366 3439 2.416547 CTGGGAAATGCACAAGTAGACG 59.583 50.000 0.00 0.00 0.00 4.18 R
3461 3534 2.358737 CAACTCCGGCCTGGTGAC 60.359 66.667 18.38 0.00 39.52 3.67 R
3708 4123 1.975680 TCTTTTAGGTCCGCCAGACTT 59.024 47.619 1.90 0.00 45.54 3.01 R
4535 4998 1.134220 ACACCGAGAAAAACTGGCTGA 60.134 47.619 0.00 0.00 0.00 4.26 R
5687 6158 1.466167 CTCCGCAACACAGGATTTCAG 59.534 52.381 0.00 0.00 35.75 3.02 R
7219 8731 0.240945 GGTCCACAAACCGATGCTTG 59.759 55.000 0.00 0.00 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 28 5.476945 GGGTTAAACACATTGATTCTGACCT 59.523 40.000 0.00 0.00 0.00 3.85
30 32 3.489355 ACACATTGATTCTGACCTGCAA 58.511 40.909 0.00 0.00 0.00 4.08
105 107 0.111253 CCCACTTTCCTGGCAAGAGT 59.889 55.000 13.11 0.00 0.00 3.24
117 119 1.873591 GGCAAGAGTTTTCAGAAGCGA 59.126 47.619 0.00 0.00 0.00 4.93
198 200 3.411446 TCAGCGATGGTTTTGTGAATCT 58.589 40.909 0.00 0.00 0.00 2.40
208 210 4.989168 GGTTTTGTGAATCTGTCGTACTCT 59.011 41.667 0.00 0.00 0.00 3.24
369 371 2.292016 CCGCTCTCATCGTCTTGTAGAT 59.708 50.000 0.00 0.00 0.00 1.98
379 381 7.726216 TCATCGTCTTGTAGATTCCATATTGT 58.274 34.615 0.00 0.00 0.00 2.71
432 434 1.689273 GGCCATCCATCTAGTCGTCTT 59.311 52.381 0.00 0.00 0.00 3.01
476 478 1.377202 ACCACCACATCGTCCATGC 60.377 57.895 0.00 0.00 35.65 4.06
524 526 4.344865 GCGCTTCCAAGTCCCCCA 62.345 66.667 0.00 0.00 0.00 4.96
641 646 0.398318 GGAGACAAGCACCAAGGACT 59.602 55.000 0.00 0.00 0.00 3.85
642 647 1.609320 GGAGACAAGCACCAAGGACTC 60.609 57.143 0.00 0.00 0.00 3.36
780 790 3.957591 ACGAGAGGGTTAGAAAAGACC 57.042 47.619 0.00 0.00 35.14 3.85
781 791 3.236896 ACGAGAGGGTTAGAAAAGACCA 58.763 45.455 0.00 0.00 37.68 4.02
782 792 3.644738 ACGAGAGGGTTAGAAAAGACCAA 59.355 43.478 0.00 0.00 37.68 3.67
783 793 4.102054 ACGAGAGGGTTAGAAAAGACCAAA 59.898 41.667 0.00 0.00 37.68 3.28
784 794 5.221864 ACGAGAGGGTTAGAAAAGACCAAAT 60.222 40.000 0.00 0.00 37.68 2.32
785 795 6.013984 ACGAGAGGGTTAGAAAAGACCAAATA 60.014 38.462 0.00 0.00 37.68 1.40
786 796 6.313164 CGAGAGGGTTAGAAAAGACCAAATAC 59.687 42.308 0.00 0.00 37.68 1.89
787 797 6.171213 AGAGGGTTAGAAAAGACCAAATACG 58.829 40.000 0.00 0.00 37.68 3.06
971 981 2.836154 GGCGCCTCAATCCCCATA 59.164 61.111 22.15 0.00 0.00 2.74
1108 1118 5.761234 AGTTGAGTTTTGAGGTATGCGTTTA 59.239 36.000 0.00 0.00 0.00 2.01
1313 1324 0.390124 ACGTACGTGCTTTCTTCCCA 59.610 50.000 22.14 0.00 0.00 4.37
1345 1360 5.542779 TCTTCTTCACTGTTTTAGAGAGGC 58.457 41.667 0.00 0.00 0.00 4.70
1347 1362 4.887748 TCTTCACTGTTTTAGAGAGGCAG 58.112 43.478 0.00 0.00 0.00 4.85
1348 1363 4.588951 TCTTCACTGTTTTAGAGAGGCAGA 59.411 41.667 0.00 0.00 0.00 4.26
1349 1364 4.955811 TCACTGTTTTAGAGAGGCAGAA 57.044 40.909 0.00 0.00 0.00 3.02
1350 1365 4.632153 TCACTGTTTTAGAGAGGCAGAAC 58.368 43.478 0.00 0.00 0.00 3.01
1351 1366 3.748568 CACTGTTTTAGAGAGGCAGAACC 59.251 47.826 0.00 0.00 39.61 3.62
1352 1367 3.391296 ACTGTTTTAGAGAGGCAGAACCA 59.609 43.478 0.00 0.00 43.14 3.67
1353 1368 4.042187 ACTGTTTTAGAGAGGCAGAACCAT 59.958 41.667 0.00 0.00 43.14 3.55
1369 1384 6.578023 CAGAACCATGGAAGTTTTTAACCAA 58.422 36.000 21.47 0.00 36.00 3.67
1382 1397 4.425180 TTTAACCAACTGGAGCTGTGTA 57.575 40.909 1.86 0.00 38.94 2.90
1390 1405 0.321671 TGGAGCTGTGTAAGTCTGCC 59.678 55.000 0.00 0.00 0.00 4.85
1391 1406 0.737715 GGAGCTGTGTAAGTCTGCCG 60.738 60.000 0.00 0.00 0.00 5.69
1407 1422 1.202830 TGCCGCTAGGAAACTCCAAAA 60.203 47.619 0.00 0.00 43.67 2.44
1434 1449 7.234661 AGTTTTGGAGTTTTAGTTTGTTGGA 57.765 32.000 0.00 0.00 0.00 3.53
1441 1456 8.215050 TGGAGTTTTAGTTTGTTGGAATAGAGA 58.785 33.333 0.00 0.00 0.00 3.10
1449 1464 4.142609 TGTTGGAATAGAGAGTCATGCC 57.857 45.455 0.00 0.00 0.00 4.40
1470 1485 5.043248 GCCATTGCAACATTATACTGTTCC 58.957 41.667 0.00 0.00 37.25 3.62
1522 1537 3.513515 GGTGAAGATGGCATTTTTGGGTA 59.486 43.478 0.00 0.00 0.00 3.69
1564 1580 4.344968 GGGCCAAAATATGTATGAGGCTTT 59.655 41.667 4.39 0.00 40.40 3.51
1565 1581 5.291971 GGCCAAAATATGTATGAGGCTTTG 58.708 41.667 0.00 0.00 40.40 2.77
1575 1591 5.448654 TGTATGAGGCTTTGCTCCATATTT 58.551 37.500 0.00 0.00 30.83 1.40
1649 1665 4.801891 TGGTACAAATACGACACAGAGAC 58.198 43.478 0.00 0.00 31.92 3.36
1655 1671 2.363788 TACGACACAGAGACATTGGC 57.636 50.000 0.00 0.00 0.00 4.52
1660 1676 3.364366 CGACACAGAGACATTGGCTTTTC 60.364 47.826 0.00 0.00 0.00 2.29
1661 1677 2.887152 ACACAGAGACATTGGCTTTTCC 59.113 45.455 0.00 0.00 0.00 3.13
1662 1678 2.229784 CACAGAGACATTGGCTTTTCCC 59.770 50.000 0.00 0.00 0.00 3.97
1663 1679 2.158475 ACAGAGACATTGGCTTTTCCCA 60.158 45.455 0.00 0.00 0.00 4.37
1664 1680 2.229784 CAGAGACATTGGCTTTTCCCAC 59.770 50.000 0.00 0.00 33.82 4.61
1665 1681 2.108952 AGAGACATTGGCTTTTCCCACT 59.891 45.455 0.00 0.00 33.82 4.00
1666 1682 2.229784 GAGACATTGGCTTTTCCCACTG 59.770 50.000 0.00 0.00 40.32 3.66
1667 1683 2.158475 AGACATTGGCTTTTCCCACTGA 60.158 45.455 5.68 0.00 37.65 3.41
1668 1684 2.627699 GACATTGGCTTTTCCCACTGAA 59.372 45.455 5.68 0.00 37.65 3.02
1669 1685 2.365293 ACATTGGCTTTTCCCACTGAAC 59.635 45.455 5.68 0.00 37.65 3.18
1705 1721 6.715347 AAAACCTAGACTGATTGCTTGTTT 57.285 33.333 0.00 0.00 0.00 2.83
1706 1722 5.695851 AACCTAGACTGATTGCTTGTTTG 57.304 39.130 0.00 0.00 0.00 2.93
1718 1734 1.678101 GCTTGTTTGGCAGAAGAGTGT 59.322 47.619 7.06 0.00 0.00 3.55
1719 1735 2.287248 GCTTGTTTGGCAGAAGAGTGTC 60.287 50.000 7.06 0.00 0.00 3.67
1738 1754 7.171678 AGAGTGTCTTTCTTCCGTCAAATAAAG 59.828 37.037 0.00 0.00 0.00 1.85
1777 1793 4.039703 GGAATTCGATGAATACGACGTGA 58.960 43.478 11.56 0.00 39.46 4.35
1817 1833 6.861065 TTGCTCTTAACACTAGAAACCTTG 57.139 37.500 0.00 0.00 0.00 3.61
1827 1843 8.747538 AACACTAGAAACCTTGTATGTTTTCT 57.252 30.769 0.00 0.00 36.13 2.52
1860 1876 9.929722 TCAAATATTTGAATTACGTCTACATGC 57.070 29.630 25.11 0.00 43.62 4.06
1883 1899 9.950496 ATGCTATAAATGGACTATTAGGTGAAG 57.050 33.333 0.00 0.00 0.00 3.02
1896 1912 9.686683 ACTATTAGGTGAAGAAGCATGTAAATT 57.313 29.630 0.00 0.00 0.00 1.82
1955 1972 5.418840 GTCTGGTTGGACATGTGGATATTTT 59.581 40.000 1.15 0.00 36.35 1.82
2143 2192 3.159213 TCCACATTGAATCTGCAGGTT 57.841 42.857 13.24 13.24 0.00 3.50
2172 2221 7.087007 TCATAGCAAAAACACGATGCAAATTA 58.913 30.769 0.00 0.00 42.45 1.40
2318 2367 4.495565 TCTGTTCCCTTACCCTTCTTACA 58.504 43.478 0.00 0.00 0.00 2.41
2325 2374 4.263771 CCCTTACCCTTCTTACATTGTGGT 60.264 45.833 0.00 0.00 0.00 4.16
2339 2388 6.409524 ACATTGTGGTGAACATGATTTTCT 57.590 33.333 0.00 0.00 38.99 2.52
2420 2469 7.417342 GGCCCATAATTTTCATAACTGCACTTA 60.417 37.037 0.00 0.00 0.00 2.24
2423 2472 8.137437 CCATAATTTTCATAACTGCACTTAGGG 58.863 37.037 0.00 0.00 0.00 3.53
2428 2477 3.455910 TCATAACTGCACTTAGGGCTGAT 59.544 43.478 19.85 10.68 34.70 2.90
2440 2489 5.249852 ACTTAGGGCTGATAACAACCTGTTA 59.750 40.000 1.95 1.95 45.63 2.41
2467 2516 8.701895 TGTAACTACTAAAGTATTCCATCTGGG 58.298 37.037 0.00 0.00 37.50 4.45
2469 2518 7.362802 ACTACTAAAGTATTCCATCTGGGTC 57.637 40.000 0.00 0.00 36.36 4.46
2470 2519 6.901300 ACTACTAAAGTATTCCATCTGGGTCA 59.099 38.462 0.00 0.00 36.36 4.02
2471 2520 5.990668 ACTAAAGTATTCCATCTGGGTCAC 58.009 41.667 0.00 0.00 38.11 3.67
2474 2523 5.878406 AAGTATTCCATCTGGGTCACTAG 57.122 43.478 0.00 0.00 38.11 2.57
2475 2524 4.884961 AGTATTCCATCTGGGTCACTAGT 58.115 43.478 0.00 0.00 38.11 2.57
2491 2553 7.123247 GGGTCACTAGTACCTAAAATGTCTACA 59.877 40.741 16.30 0.00 37.18 2.74
2524 2586 7.234355 ACAGAGGGAGTATCTCAAAAACATTT 58.766 34.615 0.00 0.00 38.91 2.32
2525 2587 7.175641 ACAGAGGGAGTATCTCAAAAACATTTG 59.824 37.037 0.00 0.00 38.91 2.32
2526 2588 6.151817 AGAGGGAGTATCTCAAAAACATTTGC 59.848 38.462 0.00 0.00 38.91 3.68
2527 2589 5.774690 AGGGAGTATCTCAAAAACATTTGCA 59.225 36.000 0.00 0.00 38.91 4.08
2528 2590 6.071728 AGGGAGTATCTCAAAAACATTTGCAG 60.072 38.462 0.00 0.00 38.91 4.41
2529 2591 5.574443 GGAGTATCTCAAAAACATTTGCAGC 59.426 40.000 0.00 0.00 33.73 5.25
2530 2592 6.336842 AGTATCTCAAAAACATTTGCAGCT 57.663 33.333 0.00 0.00 32.23 4.24
2577 2639 9.988815 CATAGAATAGTAATTACTGGCAACTCT 57.011 33.333 25.27 13.60 37.10 3.24
2802 2867 2.363018 TCTCAGTCCCGCCTCCTG 60.363 66.667 0.00 0.00 0.00 3.86
2860 2925 4.523083 TGTTCTAGCTTCAAGGTTTGTGT 58.477 39.130 0.00 0.00 0.00 3.72
2861 2926 4.335315 TGTTCTAGCTTCAAGGTTTGTGTG 59.665 41.667 0.00 0.00 0.00 3.82
2873 2939 5.576447 AGGTTTGTGTGTTAAACAGAAGG 57.424 39.130 0.00 0.00 42.46 3.46
2893 2959 3.004734 AGGCTTTGAATTTTCTGTCCACG 59.995 43.478 0.00 0.00 0.00 4.94
2991 3062 6.929049 GGCTAACTTAATTTTCTTTTGGCAGT 59.071 34.615 0.00 0.00 0.00 4.40
3076 3148 3.551485 GCAGTCACAAACATCAAACCAAC 59.449 43.478 0.00 0.00 0.00 3.77
3080 3152 4.744631 GTCACAAACATCAAACCAACCATC 59.255 41.667 0.00 0.00 0.00 3.51
3128 3200 8.777865 TCATGACTCCTAAAAATTGTGTCTAG 57.222 34.615 0.00 0.00 0.00 2.43
3144 3216 2.233186 GTCTAGTGTACCTTTTCGGCCT 59.767 50.000 0.00 0.00 35.61 5.19
3187 3259 6.715718 TCTGCTATTATGGGAGTAGTCACTAC 59.284 42.308 6.89 6.89 37.23 2.73
3202 3274 3.082548 TCACTACTCACTAGGCACTGAC 58.917 50.000 0.00 0.00 41.52 3.51
3216 3288 3.755378 GGCACTGACAAGATCTGATGTTT 59.245 43.478 0.00 0.00 0.00 2.83
3261 3333 5.648178 TTGGAAGATCACATGGTTCATTG 57.352 39.130 0.00 0.00 0.00 2.82
3319 3392 9.566432 TTCCTACAAAAATGCCATTTTAATTGT 57.434 25.926 15.33 16.83 41.30 2.71
3387 3460 2.416547 CGTCTACTTGTGCATTTCCCAG 59.583 50.000 0.00 0.00 0.00 4.45
3388 3461 3.412386 GTCTACTTGTGCATTTCCCAGT 58.588 45.455 0.00 0.00 0.00 4.00
3461 3534 5.936686 AGTCATGTCACATCAGAAGTTTG 57.063 39.130 0.00 0.00 0.00 2.93
3471 3544 0.954452 CAGAAGTTTGTCACCAGGCC 59.046 55.000 0.00 0.00 0.00 5.19
3489 3562 1.538419 GCCGGAGTTGACAGTATAGCC 60.538 57.143 5.05 0.00 0.00 3.93
3543 3616 9.730705 CATCTATCATTTATTTCCCTAAGCTCA 57.269 33.333 0.00 0.00 0.00 4.26
3554 3627 7.973048 TTTCCCTAAGCTCAGTTCTTCTATA 57.027 36.000 0.00 0.00 0.00 1.31
3558 3631 9.469097 TCCCTAAGCTCAGTTCTTCTATATATC 57.531 37.037 0.00 0.00 0.00 1.63
3790 4205 6.521527 AGGATTTGGAAGATAATGGCTACT 57.478 37.500 0.00 0.00 0.00 2.57
3792 4207 6.331307 AGGATTTGGAAGATAATGGCTACTCT 59.669 38.462 0.00 0.00 0.00 3.24
3853 4270 2.363359 CTGCCTTCCAATTTATGCCCTC 59.637 50.000 0.00 0.00 0.00 4.30
3866 4283 1.540267 TGCCCTCACGTTAAAATGGG 58.460 50.000 0.00 0.00 37.76 4.00
3876 4293 5.125739 TCACGTTAAAATGGGTGTTTGTTCT 59.874 36.000 0.00 0.00 0.00 3.01
3912 4329 3.842007 TTTCAGGTTTTGTCCCTACGA 57.158 42.857 0.00 0.00 0.00 3.43
3924 4341 0.179000 CCCTACGATTGCAGCTCCTT 59.821 55.000 0.00 0.00 0.00 3.36
3925 4342 1.576356 CCTACGATTGCAGCTCCTTC 58.424 55.000 0.00 0.00 0.00 3.46
3941 4358 2.061061 CCTTCAGGCTCTTCCCCATAT 58.939 52.381 0.00 0.00 34.51 1.78
3953 4370 4.103153 TCTTCCCCATATGAAATTCTCGCT 59.897 41.667 3.65 0.00 0.00 4.93
4048 4465 7.156673 CCTTGTTTGATTTGTTCATCCAAGAT 58.843 34.615 12.56 0.00 40.95 2.40
4049 4466 7.658575 CCTTGTTTGATTTGTTCATCCAAGATT 59.341 33.333 12.56 0.00 40.95 2.40
4278 4741 3.325293 TGCTGGACTCAGATTTCTGTC 57.675 47.619 7.42 0.00 43.49 3.51
4354 4817 3.781079 AATATGTGTTGGCATGAACCG 57.219 42.857 0.00 0.00 0.00 4.44
4440 4903 5.128991 ACTGGATAAACTAGTCAAGCCTACC 59.871 44.000 11.66 2.89 35.41 3.18
4449 4912 3.891049 AGTCAAGCCTACCAATCCAATC 58.109 45.455 0.00 0.00 0.00 2.67
4470 4933 9.342308 CCAATCACTGATTACAATACAAGGTAT 57.658 33.333 3.88 0.00 30.44 2.73
4517 4980 4.740235 GCTAGCTAGCCTGAACCG 57.260 61.111 31.67 0.29 43.39 4.44
4535 4998 7.228706 CCTGAACCGGAACTATGCTATATTTTT 59.771 37.037 9.46 0.00 0.00 1.94
4547 5010 9.807649 CTATGCTATATTTTTCAGCCAGTTTTT 57.192 29.630 0.00 0.00 34.31 1.94
4551 5014 7.218963 GCTATATTTTTCAGCCAGTTTTTCTCG 59.781 37.037 0.00 0.00 0.00 4.04
4553 5016 2.341846 TTCAGCCAGTTTTTCTCGGT 57.658 45.000 0.00 0.00 0.00 4.69
4557 5020 3.074412 CAGCCAGTTTTTCTCGGTGTAT 58.926 45.455 0.00 0.00 30.38 2.29
4567 5030 9.511272 AGTTTTTCTCGGTGTATTTTAGGTTAT 57.489 29.630 0.00 0.00 0.00 1.89
4710 5173 8.621532 TGCCTTTATATTCCTGTACATGATTC 57.378 34.615 0.00 0.00 0.00 2.52
4711 5174 8.439971 TGCCTTTATATTCCTGTACATGATTCT 58.560 33.333 0.00 0.00 0.00 2.40
4712 5175 8.725148 GCCTTTATATTCCTGTACATGATTCTG 58.275 37.037 0.00 0.00 0.00 3.02
4713 5176 9.784531 CCTTTATATTCCTGTACATGATTCTGT 57.215 33.333 0.00 0.00 0.00 3.41
4719 5182 8.899427 ATTCCTGTACATGATTCTGTTCATAG 57.101 34.615 0.00 0.00 34.59 2.23
4720 5183 7.423844 TCCTGTACATGATTCTGTTCATAGT 57.576 36.000 0.00 0.00 34.59 2.12
4749 5212 3.944015 AGGTGCTGAATGATAGCTTTGAC 59.056 43.478 0.00 0.00 41.66 3.18
4755 5218 8.997323 GTGCTGAATGATAGCTTTGACTATAAT 58.003 33.333 0.00 0.00 41.66 1.28
4853 5316 6.959639 TCAGGTCAGCTGTTTCTAATTTTT 57.040 33.333 14.67 0.00 0.00 1.94
5054 5517 7.817641 TGTTTTGTACAAATATAATCGTGGCA 58.182 30.769 21.17 0.00 32.64 4.92
5056 5519 5.994887 TGTACAAATATAATCGTGGCACC 57.005 39.130 12.86 0.00 0.00 5.01
5242 5705 2.750712 GCTTTTCCAACGGTTAGGCATA 59.249 45.455 0.00 0.00 0.00 3.14
5245 5708 4.497291 TTTCCAACGGTTAGGCATAGAT 57.503 40.909 0.00 0.00 0.00 1.98
5246 5709 4.497291 TTCCAACGGTTAGGCATAGATT 57.503 40.909 0.00 0.00 0.00 2.40
5247 5710 5.617528 TTCCAACGGTTAGGCATAGATTA 57.382 39.130 0.00 0.00 0.00 1.75
5248 5711 5.617528 TCCAACGGTTAGGCATAGATTAA 57.382 39.130 0.00 0.00 0.00 1.40
5262 5725 7.017645 GGCATAGATTAATCATTACAAGCACG 58.982 38.462 17.56 0.00 0.00 5.34
5265 5728 6.363577 AGATTAATCATTACAAGCACGTGG 57.636 37.500 18.88 2.89 0.00 4.94
5277 5740 3.636282 AGCACGTGGTTTTTGGTATTC 57.364 42.857 15.81 0.00 0.00 1.75
5278 5741 3.219281 AGCACGTGGTTTTTGGTATTCT 58.781 40.909 15.81 0.00 0.00 2.40
5308 5771 3.068024 TGATTTGTTGCCTTTCTGTGGTC 59.932 43.478 0.00 0.00 0.00 4.02
5354 5817 1.089920 CTGATTTTGGCTCTCCACCG 58.910 55.000 0.00 0.00 43.33 4.94
5675 6146 8.737175 TCTCTTATCTACGTAAAAGAGCTGAAA 58.263 33.333 24.01 12.58 42.96 2.69
5687 6158 7.776933 AAAAGAGCTGAAAATCCTGAAAAAC 57.223 32.000 0.00 0.00 0.00 2.43
5704 6175 3.354089 AAACTGAAATCCTGTGTTGCG 57.646 42.857 0.00 0.00 0.00 4.85
5731 6202 4.622740 GCTATTGCATTGAAAACCTGTGAC 59.377 41.667 0.00 0.00 39.41 3.67
5852 6323 6.711645 ACTGCCTGAAAATGCAATGTTTATTT 59.288 30.769 0.00 0.00 36.98 1.40
5942 6441 9.567776 TTTCATGTTTTCCATTCTAGTCTGTTA 57.432 29.630 0.00 0.00 0.00 2.41
6021 6520 6.815142 GCAGATTAAAGAAAATGCTCAACCAT 59.185 34.615 0.00 0.00 33.34 3.55
6151 6650 1.336755 CAACTTGTCCTTTTCCCCACG 59.663 52.381 0.00 0.00 0.00 4.94
6162 6661 3.622826 CCCCACGTGTTCCGGAGT 61.623 66.667 15.65 0.00 42.24 3.85
6224 6726 7.543172 CACCATTTTTGAAGATGGATGTAACTG 59.457 37.037 17.32 2.98 44.49 3.16
6237 6739 3.202829 TGTAACTGACAAACACCCCTC 57.797 47.619 0.00 0.00 34.15 4.30
6317 6819 8.404000 ACTATCACTTTTGAAGATTGATGATGC 58.596 33.333 0.00 0.00 34.61 3.91
6446 6956 1.004918 CGGCTTTGAAGTCCGAGGT 60.005 57.895 16.34 0.00 43.53 3.85
6651 7162 6.020599 GTCTAGTAATGACAATGTAGTGCACG 60.021 42.308 12.01 0.00 34.80 5.34
6658 7169 0.321671 AATGTAGTGCACGTGCCTCT 59.678 50.000 35.72 31.53 41.18 3.69
6677 7188 1.089920 TACGAAGTAGTCCCGAGCAC 58.910 55.000 0.00 0.00 45.11 4.40
6728 7251 3.056891 CAGAATATTTGGGCGTTTGTGGT 60.057 43.478 0.00 0.00 0.00 4.16
6782 7305 5.243283 AGTGAGAACGAACATACAGGTTACT 59.757 40.000 0.00 0.00 0.00 2.24
6783 7306 6.432162 AGTGAGAACGAACATACAGGTTACTA 59.568 38.462 0.00 0.00 0.00 1.82
6784 7307 6.525976 GTGAGAACGAACATACAGGTTACTAC 59.474 42.308 0.00 0.00 0.00 2.73
6785 7308 6.432162 TGAGAACGAACATACAGGTTACTACT 59.568 38.462 0.00 0.00 0.00 2.57
6786 7309 6.850555 AGAACGAACATACAGGTTACTACTC 58.149 40.000 0.00 0.00 0.00 2.59
6787 7310 5.573337 ACGAACATACAGGTTACTACTCC 57.427 43.478 0.00 0.00 0.00 3.85
6788 7311 5.259632 ACGAACATACAGGTTACTACTCCT 58.740 41.667 0.00 0.00 33.96 3.69
6789 7312 5.713861 ACGAACATACAGGTTACTACTCCTT 59.286 40.000 0.00 0.00 30.91 3.36
6790 7313 6.127786 ACGAACATACAGGTTACTACTCCTTC 60.128 42.308 0.00 0.00 30.91 3.46
6791 7314 6.541934 AACATACAGGTTACTACTCCTTCC 57.458 41.667 0.00 0.00 30.91 3.46
6792 7315 4.643784 ACATACAGGTTACTACTCCTTCCG 59.356 45.833 0.00 0.00 30.91 4.30
6793 7316 3.166560 ACAGGTTACTACTCCTTCCGT 57.833 47.619 0.00 0.00 30.91 4.69
6794 7317 3.504375 ACAGGTTACTACTCCTTCCGTT 58.496 45.455 0.00 0.00 30.91 4.44
6795 7318 3.899980 ACAGGTTACTACTCCTTCCGTTT 59.100 43.478 0.00 0.00 30.91 3.60
6796 7319 4.021632 ACAGGTTACTACTCCTTCCGTTTC 60.022 45.833 0.00 0.00 30.91 2.78
6797 7320 4.021719 CAGGTTACTACTCCTTCCGTTTCA 60.022 45.833 0.00 0.00 30.91 2.69
6798 7321 4.590222 AGGTTACTACTCCTTCCGTTTCAA 59.410 41.667 0.00 0.00 0.00 2.69
6799 7322 5.070847 AGGTTACTACTCCTTCCGTTTCAAA 59.929 40.000 0.00 0.00 0.00 2.69
6800 7323 5.759763 GGTTACTACTCCTTCCGTTTCAAAA 59.240 40.000 0.00 0.00 0.00 2.44
6801 7324 6.429078 GGTTACTACTCCTTCCGTTTCAAAAT 59.571 38.462 0.00 0.00 0.00 1.82
6802 7325 7.603784 GGTTACTACTCCTTCCGTTTCAAAATA 59.396 37.037 0.00 0.00 0.00 1.40
6803 7326 8.654215 GTTACTACTCCTTCCGTTTCAAAATAG 58.346 37.037 0.00 0.00 0.00 1.73
6804 7327 7.001099 ACTACTCCTTCCGTTTCAAAATAGA 57.999 36.000 0.00 0.00 0.00 1.98
6805 7328 7.621796 ACTACTCCTTCCGTTTCAAAATAGAT 58.378 34.615 0.00 0.00 0.00 1.98
6806 7329 6.743575 ACTCCTTCCGTTTCAAAATAGATG 57.256 37.500 0.00 0.00 0.00 2.90
6807 7330 6.472887 ACTCCTTCCGTTTCAAAATAGATGA 58.527 36.000 0.00 0.00 0.00 2.92
6808 7331 6.371825 ACTCCTTCCGTTTCAAAATAGATGAC 59.628 38.462 0.00 0.00 0.00 3.06
6809 7332 5.646360 TCCTTCCGTTTCAAAATAGATGACC 59.354 40.000 0.00 0.00 0.00 4.02
6810 7333 5.163652 CCTTCCGTTTCAAAATAGATGACCC 60.164 44.000 0.00 0.00 0.00 4.46
6811 7334 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
6812 7335 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
6813 7336 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
6814 7337 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
6815 7338 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
6816 7339 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
6817 7340 8.293867 CGTTTCAAAATAGATGACCCAACTTTA 58.706 33.333 0.00 0.00 0.00 1.85
6859 7382 9.956720 AAAGTTGAGTCATCTATTTTGAAACAG 57.043 29.630 4.14 0.00 0.00 3.16
6860 7383 8.908786 AGTTGAGTCATCTATTTTGAAACAGA 57.091 30.769 1.70 0.00 0.00 3.41
6861 7384 8.997323 AGTTGAGTCATCTATTTTGAAACAGAG 58.003 33.333 1.70 0.00 0.00 3.35
6862 7385 7.912056 TGAGTCATCTATTTTGAAACAGAGG 57.088 36.000 0.00 0.00 0.00 3.69
6863 7386 7.679783 TGAGTCATCTATTTTGAAACAGAGGA 58.320 34.615 0.00 0.00 0.00 3.71
6864 7387 8.156820 TGAGTCATCTATTTTGAAACAGAGGAA 58.843 33.333 1.27 0.00 30.50 3.36
6865 7388 8.558973 AGTCATCTATTTTGAAACAGAGGAAG 57.441 34.615 1.27 0.00 30.50 3.46
7029 7554 1.451927 CTGGCATGGTATGTGGCGT 60.452 57.895 0.00 0.00 44.31 5.68
7064 7589 1.416030 GGACAATTTGGCCCAGTTTGT 59.584 47.619 10.45 11.78 40.64 2.83
7072 7597 1.067916 GCCCAGTTTGTGGTTGCTG 59.932 57.895 0.00 0.00 46.37 4.41
7113 8625 2.999363 GAAACAAGCCAACCGCCGTG 62.999 60.000 0.00 0.00 38.78 4.94
7169 8681 4.081697 CCAAAATGGACCCTTAAATCGCTT 60.082 41.667 0.00 0.00 40.96 4.68
7175 8687 5.258051 TGGACCCTTAAATCGCTTGTAAAT 58.742 37.500 0.00 0.00 0.00 1.40
7219 8731 3.969642 CTTTGCCATCCAACGCCGC 62.970 63.158 0.00 0.00 31.97 6.53
7288 8801 2.640316 AAGAGTTTTTGCGGGAGTCT 57.360 45.000 0.00 0.00 0.00 3.24
7319 8833 2.421073 CACGTAATACTCCGACACCTCA 59.579 50.000 0.00 0.00 0.00 3.86
7442 8957 4.681978 AGCCTTGGACCGTCGTGC 62.682 66.667 0.00 0.00 0.00 5.34
7463 8978 1.610624 CCTCCATTGCTACACACGGTT 60.611 52.381 0.00 0.00 0.00 4.44
7505 9020 2.093106 CGCTAGTCCACACCTCTAGTT 58.907 52.381 0.00 0.00 35.14 2.24
7535 9050 0.756903 ACATGTACCATCCGCCCTAC 59.243 55.000 0.00 0.00 0.00 3.18
7579 9094 1.002251 GTTTGGTGAAACGCGATGGAA 60.002 47.619 15.93 0.00 38.12 3.53
7621 9339 4.736464 GCCCTTTTCACAGACGATTTTTGT 60.736 41.667 0.00 0.00 0.00 2.83
7675 9413 3.194116 TCGGTCCTACAACAATGACTACC 59.806 47.826 0.00 0.00 0.00 3.18
7695 9433 7.102346 ACTACCTCATCTTGAAGAAGAATGTG 58.898 38.462 0.00 0.00 41.64 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 28 2.091555 AGGGGAACTTTTACAGGTTGCA 60.092 45.455 0.00 0.00 35.89 4.08
30 32 4.529716 TTTGAGGGGAACTTTTACAGGT 57.470 40.909 0.00 0.00 0.00 4.00
105 107 6.260936 GGATGGATTCTATTCGCTTCTGAAAA 59.739 38.462 0.00 0.00 0.00 2.29
117 119 3.368843 CGATCTGCCGGATGGATTCTATT 60.369 47.826 5.05 0.00 37.49 1.73
198 200 2.099405 TGATCATGGCAGAGTACGACA 58.901 47.619 0.00 0.00 0.00 4.35
208 210 2.092267 AGGTAATGCAGTGATCATGGCA 60.092 45.455 21.61 21.61 41.00 4.92
345 347 4.560856 AGACGATGAGAGCGGCGC 62.561 66.667 26.86 26.86 42.78 6.53
369 371 8.577296 CGGAGAAGAAGTATAGACAATATGGAA 58.423 37.037 0.00 0.00 0.00 3.53
379 381 4.639310 GTCCACACGGAGAAGAAGTATAGA 59.361 45.833 0.00 0.00 43.99 1.98
432 434 1.734137 GAAGATCTACTGCCGCCGA 59.266 57.895 0.00 0.00 0.00 5.54
524 526 2.427506 GTCGGCTTCAAACTCCAGAAT 58.572 47.619 0.00 0.00 0.00 2.40
628 633 1.302033 CTGCGAGTCCTTGGTGCTT 60.302 57.895 0.00 0.00 0.00 3.91
770 780 6.527423 ACAACTCCGTATTTGGTCTTTTCTA 58.473 36.000 0.00 0.00 0.00 2.10
771 781 5.374071 ACAACTCCGTATTTGGTCTTTTCT 58.626 37.500 0.00 0.00 0.00 2.52
772 782 5.684550 ACAACTCCGTATTTGGTCTTTTC 57.315 39.130 0.00 0.00 0.00 2.29
773 783 6.320418 AGAAACAACTCCGTATTTGGTCTTTT 59.680 34.615 0.00 0.00 0.00 2.27
774 784 5.826208 AGAAACAACTCCGTATTTGGTCTTT 59.174 36.000 0.00 0.00 0.00 2.52
775 785 5.374071 AGAAACAACTCCGTATTTGGTCTT 58.626 37.500 0.00 0.00 0.00 3.01
776 786 4.969484 AGAAACAACTCCGTATTTGGTCT 58.031 39.130 0.00 0.00 0.00 3.85
777 787 5.350640 CCTAGAAACAACTCCGTATTTGGTC 59.649 44.000 0.00 0.00 0.00 4.02
778 788 5.221783 ACCTAGAAACAACTCCGTATTTGGT 60.222 40.000 0.00 0.00 0.00 3.67
779 789 5.243207 ACCTAGAAACAACTCCGTATTTGG 58.757 41.667 0.00 0.00 0.00 3.28
780 790 9.028185 GTATACCTAGAAACAACTCCGTATTTG 57.972 37.037 0.00 0.00 0.00 2.32
781 791 8.975295 AGTATACCTAGAAACAACTCCGTATTT 58.025 33.333 0.00 0.00 0.00 1.40
782 792 8.530804 AGTATACCTAGAAACAACTCCGTATT 57.469 34.615 0.00 0.00 0.00 1.89
783 793 7.997803 AGAGTATACCTAGAAACAACTCCGTAT 59.002 37.037 0.00 0.00 33.91 3.06
784 794 7.341805 AGAGTATACCTAGAAACAACTCCGTA 58.658 38.462 0.00 0.00 33.91 4.02
785 795 6.186234 AGAGTATACCTAGAAACAACTCCGT 58.814 40.000 0.00 0.00 33.91 4.69
786 796 6.696441 AGAGTATACCTAGAAACAACTCCG 57.304 41.667 0.00 0.00 33.91 4.63
787 797 9.800433 GTAAAGAGTATACCTAGAAACAACTCC 57.200 37.037 0.00 0.00 33.91 3.85
852 862 0.259647 TGGATCCCTGGCAAGATTGG 59.740 55.000 9.90 0.00 0.00 3.16
1108 1118 6.828785 ACTTTACTAATCGCTGGATGGAAAAT 59.171 34.615 0.00 0.00 31.83 1.82
1172 1183 0.466124 ATCTAGAAGTTCTGCCGGGC 59.534 55.000 15.90 13.32 0.00 6.13
1256 1267 2.365095 AATACGTAGAGGCAGCGGGC 62.365 60.000 1.08 1.08 43.74 6.13
1289 1300 2.048877 AAAGCACGTACGTCGGGG 60.049 61.111 19.94 8.62 43.98 5.73
1313 1324 7.888250 AAAACAGTGAAGAAGAGAAAAGGAT 57.112 32.000 0.00 0.00 0.00 3.24
1345 1360 6.155475 TGGTTAAAAACTTCCATGGTTCTG 57.845 37.500 12.58 3.22 0.00 3.02
1347 1362 6.478673 CAGTTGGTTAAAAACTTCCATGGTTC 59.521 38.462 12.58 0.00 35.70 3.62
1348 1363 6.345298 CAGTTGGTTAAAAACTTCCATGGTT 58.655 36.000 12.58 0.00 35.70 3.67
1349 1364 5.163353 CCAGTTGGTTAAAAACTTCCATGGT 60.163 40.000 12.58 0.00 35.70 3.55
1350 1365 5.069781 TCCAGTTGGTTAAAAACTTCCATGG 59.930 40.000 4.97 4.97 35.70 3.66
1351 1366 6.155475 TCCAGTTGGTTAAAAACTTCCATG 57.845 37.500 2.75 0.00 35.70 3.66
1352 1367 5.221441 GCTCCAGTTGGTTAAAAACTTCCAT 60.221 40.000 2.75 0.00 35.70 3.41
1353 1368 4.098807 GCTCCAGTTGGTTAAAAACTTCCA 59.901 41.667 2.75 0.00 35.70 3.53
1369 1384 1.001406 GCAGACTTACACAGCTCCAGT 59.999 52.381 0.00 0.00 0.00 4.00
1382 1397 0.977395 AGTTTCCTAGCGGCAGACTT 59.023 50.000 1.45 0.00 0.00 3.01
1390 1405 6.496338 AACTTATTTTGGAGTTTCCTAGCG 57.504 37.500 0.00 0.00 37.46 4.26
1407 1422 9.594478 CCAACAAACTAAAACTCCAAAACTTAT 57.406 29.630 0.00 0.00 0.00 1.73
1481 1496 9.367160 TCTTCACCATGAGTCAATATATCACTA 57.633 33.333 0.00 0.00 0.00 2.74
1482 1497 8.255111 TCTTCACCATGAGTCAATATATCACT 57.745 34.615 0.00 0.00 0.00 3.41
1483 1498 8.933807 CATCTTCACCATGAGTCAATATATCAC 58.066 37.037 0.00 0.00 0.00 3.06
1484 1499 8.098912 CCATCTTCACCATGAGTCAATATATCA 58.901 37.037 0.00 0.00 0.00 2.15
1485 1500 7.065563 GCCATCTTCACCATGAGTCAATATATC 59.934 40.741 0.00 0.00 0.00 1.63
1491 1506 2.040145 TGCCATCTTCACCATGAGTCAA 59.960 45.455 0.00 0.00 0.00 3.18
1494 1509 3.377253 AATGCCATCTTCACCATGAGT 57.623 42.857 0.00 0.00 0.00 3.41
1564 1580 8.123282 GAGAAATCTCTCCCAAAATATGGAGCA 61.123 40.741 3.16 0.00 44.33 4.26
1565 1581 6.206438 GAGAAATCTCTCCCAAAATATGGAGC 59.794 42.308 3.16 0.00 44.33 4.70
1575 1591 3.657727 ACCCTTTGAGAAATCTCTCCCAA 59.342 43.478 11.45 0.00 46.67 4.12
1624 1640 7.147966 TGTCTCTGTGTCGTATTTGTACCATAT 60.148 37.037 0.00 0.00 0.00 1.78
1643 1659 2.229784 GTGGGAAAAGCCAATGTCTCTG 59.770 50.000 0.00 0.00 38.95 3.35
1649 1665 2.629617 AGTTCAGTGGGAAAAGCCAATG 59.370 45.455 0.00 0.00 37.23 2.82
1655 1671 4.199310 TCACAGAAGTTCAGTGGGAAAAG 58.801 43.478 23.43 1.82 37.23 2.27
1660 1676 1.879796 GCCTCACAGAAGTTCAGTGGG 60.880 57.143 23.43 21.18 34.57 4.61
1661 1677 1.202687 TGCCTCACAGAAGTTCAGTGG 60.203 52.381 23.43 15.58 35.03 4.00
1662 1678 2.245159 TGCCTCACAGAAGTTCAGTG 57.755 50.000 19.38 19.38 35.53 3.66
1663 1679 3.281727 TTTGCCTCACAGAAGTTCAGT 57.718 42.857 5.50 0.00 0.00 3.41
1664 1680 4.354587 GTTTTTGCCTCACAGAAGTTCAG 58.645 43.478 5.50 0.00 0.00 3.02
1665 1681 3.130340 GGTTTTTGCCTCACAGAAGTTCA 59.870 43.478 5.50 0.00 0.00 3.18
1666 1682 3.381590 AGGTTTTTGCCTCACAGAAGTTC 59.618 43.478 0.00 0.00 32.39 3.01
1667 1683 3.365472 AGGTTTTTGCCTCACAGAAGTT 58.635 40.909 0.00 0.00 32.39 2.66
1668 1684 3.018423 AGGTTTTTGCCTCACAGAAGT 57.982 42.857 0.00 0.00 32.39 3.01
1669 1685 4.214332 GTCTAGGTTTTTGCCTCACAGAAG 59.786 45.833 0.00 0.00 39.94 2.85
1705 1721 3.495100 GGAAGAAAGACACTCTTCTGCCA 60.495 47.826 11.27 0.00 45.42 4.92
1706 1722 3.070748 GGAAGAAAGACACTCTTCTGCC 58.929 50.000 11.27 0.26 45.42 4.85
1718 1734 5.871834 TCCCTTTATTTGACGGAAGAAAGA 58.128 37.500 13.53 0.00 39.14 2.52
1719 1735 6.569179 TTCCCTTTATTTGACGGAAGAAAG 57.431 37.500 7.93 7.93 37.50 2.62
1727 1743 2.095372 GGCGACTTCCCTTTATTTGACG 59.905 50.000 0.00 0.00 0.00 4.35
1738 1754 4.410400 CAGGTGGGGCGACTTCCC 62.410 72.222 0.00 0.00 45.80 3.97
1935 1952 6.530019 AAGAAAATATCCACATGTCCAACC 57.470 37.500 0.00 0.00 0.00 3.77
1955 1972 9.256228 AGTACTCTGACCAGATAACAAATAAGA 57.744 33.333 0.00 0.00 36.76 2.10
1968 1985 2.560542 AGCACAAGAGTACTCTGACCAG 59.439 50.000 25.83 15.03 40.36 4.00
2021 2039 6.701841 TCTGTAAGAAATAAGGCATAGCTTCG 59.298 38.462 0.00 0.00 42.31 3.79
2135 2184 4.771590 TTTGCTATGAAAGAACCTGCAG 57.228 40.909 6.78 6.78 0.00 4.41
2143 2192 5.153513 GCATCGTGTTTTTGCTATGAAAGA 58.846 37.500 0.00 0.00 33.61 2.52
2172 2221 6.590234 ACAAAGAAAGAAAAGTCAGTGGTT 57.410 33.333 0.00 0.00 0.00 3.67
2307 2356 4.142038 GTTCACCACAATGTAAGAAGGGT 58.858 43.478 0.00 0.00 0.00 4.34
2318 2367 8.735692 AAAAAGAAAATCATGTTCACCACAAT 57.264 26.923 0.00 0.00 39.50 2.71
2376 2425 6.432403 TGGGCCAGAAAAACTCATTTATTT 57.568 33.333 0.00 0.00 0.00 1.40
2382 2431 6.625532 AAATTATGGGCCAGAAAAACTCAT 57.374 33.333 18.72 0.00 0.00 2.90
2396 2445 8.137437 CCTAAGTGCAGTTATGAAAATTATGGG 58.863 37.037 14.28 4.27 0.00 4.00
2446 2495 7.070074 AGTGACCCAGATGGAATACTTTAGTAG 59.930 40.741 0.00 0.00 37.39 2.57
2457 2506 3.012502 AGGTACTAGTGACCCAGATGGAA 59.987 47.826 5.39 0.00 37.73 3.53
2458 2507 2.585900 AGGTACTAGTGACCCAGATGGA 59.414 50.000 5.39 0.00 37.73 3.41
2459 2508 3.033659 AGGTACTAGTGACCCAGATGG 57.966 52.381 5.39 0.00 37.73 3.51
2460 2509 6.540438 TTTTAGGTACTAGTGACCCAGATG 57.460 41.667 5.39 0.00 44.25 2.90
2461 2510 6.672657 ACATTTTAGGTACTAGTGACCCAGAT 59.327 38.462 5.39 0.00 44.25 2.90
2462 2511 6.021030 ACATTTTAGGTACTAGTGACCCAGA 58.979 40.000 5.39 0.00 44.25 3.86
2463 2512 6.154706 AGACATTTTAGGTACTAGTGACCCAG 59.845 42.308 5.39 0.10 44.25 4.45
2464 2513 6.021030 AGACATTTTAGGTACTAGTGACCCA 58.979 40.000 5.39 0.00 44.25 4.51
2465 2514 6.541934 AGACATTTTAGGTACTAGTGACCC 57.458 41.667 5.39 2.75 44.25 4.46
2491 2553 7.496346 TGAGATACTCCCTCTGTAAACAAAT 57.504 36.000 0.00 0.00 0.00 2.32
2550 2612 9.982651 GAGTTGCCAGTAATTACTATTCTATGA 57.017 33.333 17.62 0.00 34.13 2.15
2555 2617 8.718102 TCAAGAGTTGCCAGTAATTACTATTC 57.282 34.615 17.62 8.77 34.13 1.75
2560 2622 6.371548 TGTCATCAAGAGTTGCCAGTAATTAC 59.628 38.462 7.57 7.57 0.00 1.89
2860 2925 8.257306 AGAAAATTCAAAGCCTTCTGTTTAACA 58.743 29.630 0.00 0.00 0.00 2.41
2861 2926 8.542953 CAGAAAATTCAAAGCCTTCTGTTTAAC 58.457 33.333 5.87 0.00 38.66 2.01
2873 2939 3.243401 ACCGTGGACAGAAAATTCAAAGC 60.243 43.478 0.00 0.00 0.00 3.51
2907 2973 9.016438 TGTCGCTATTATACTGATAATACACCA 57.984 33.333 0.00 0.00 38.80 4.17
2908 2974 9.286946 GTGTCGCTATTATACTGATAATACACC 57.713 37.037 8.77 0.00 37.56 4.16
2991 3062 3.500448 TGCCTTTCATCTGGTACACAA 57.500 42.857 0.00 0.00 0.00 3.33
3080 3152 6.210984 TGATCTCATACCTCCATCAGATTCAG 59.789 42.308 0.00 0.00 0.00 3.02
3128 3200 1.632948 GCGAGGCCGAAAAGGTACAC 61.633 60.000 0.00 0.00 43.70 2.90
3144 3216 3.261580 CAGACCAAATCACATAGTGCGA 58.738 45.455 0.00 0.00 32.98 5.10
3187 3259 3.446873 AGATCTTGTCAGTGCCTAGTGAG 59.553 47.826 0.00 0.00 36.95 3.51
3188 3260 3.194329 CAGATCTTGTCAGTGCCTAGTGA 59.806 47.826 0.00 0.00 33.92 3.41
3189 3261 3.194329 TCAGATCTTGTCAGTGCCTAGTG 59.806 47.826 0.00 0.00 0.00 2.74
3190 3262 3.435275 TCAGATCTTGTCAGTGCCTAGT 58.565 45.455 0.00 0.00 0.00 2.57
3191 3263 4.141981 ACATCAGATCTTGTCAGTGCCTAG 60.142 45.833 0.00 0.00 0.00 3.02
3192 3264 3.771479 ACATCAGATCTTGTCAGTGCCTA 59.229 43.478 0.00 0.00 0.00 3.93
3193 3265 2.570752 ACATCAGATCTTGTCAGTGCCT 59.429 45.455 0.00 0.00 0.00 4.75
3281 3353 9.562583 GCATTTTTGTAGGAAATAAACGTCATA 57.437 29.630 0.00 0.00 0.00 2.15
3346 3419 9.398170 GTAGACGACAGTAAAAACAGTGTATTA 57.602 33.333 0.00 0.00 32.18 0.98
3366 3439 2.416547 CTGGGAAATGCACAAGTAGACG 59.583 50.000 0.00 0.00 0.00 4.18
3461 3534 2.358737 CAACTCCGGCCTGGTGAC 60.359 66.667 18.38 0.00 39.52 3.67
3471 3544 3.187700 GTTGGCTATACTGTCAACTCCG 58.812 50.000 4.95 0.00 45.75 4.63
3489 3562 9.330063 TCAGCAAGAAATATATCCAGTTAGTTG 57.670 33.333 0.00 0.00 0.00 3.16
3708 4123 1.975680 TCTTTTAGGTCCGCCAGACTT 59.024 47.619 1.90 0.00 45.54 3.01
3771 4186 6.384015 TGAGAGAGTAGCCATTATCTTCCAAA 59.616 38.462 0.00 0.00 0.00 3.28
3790 4205 8.990163 AAAAACTAACCTGGTAAATTGAGAGA 57.010 30.769 0.00 0.00 0.00 3.10
3825 4241 5.644644 CATAAATTGGAAGGCAGAGTCAAC 58.355 41.667 0.00 0.00 0.00 3.18
3853 4270 5.344884 AGAACAAACACCCATTTTAACGTG 58.655 37.500 0.00 0.00 0.00 4.49
3912 4329 0.394080 GAGCCTGAAGGAGCTGCAAT 60.394 55.000 8.35 0.00 40.11 3.56
3924 4341 2.494888 TCATATGGGGAAGAGCCTGA 57.505 50.000 2.13 0.00 36.66 3.86
3925 4342 3.582998 TTTCATATGGGGAAGAGCCTG 57.417 47.619 2.13 0.00 36.66 4.85
3941 4358 4.996758 TCACAATCAAGAGCGAGAATTTCA 59.003 37.500 0.00 0.00 0.00 2.69
4012 4429 3.749665 TCAAACAAGGGCCTCAAAATG 57.250 42.857 6.46 2.96 0.00 2.32
4080 4497 7.149973 GCATAAATGTACCTACGAACCTATCA 58.850 38.462 0.00 0.00 0.00 2.15
4220 4683 6.404293 GGGCGATTTTTGTTAGAATGCTCTAA 60.404 38.462 0.00 0.00 41.03 2.10
4229 4692 4.879545 GTGATAGGGGCGATTTTTGTTAGA 59.120 41.667 0.00 0.00 0.00 2.10
4243 4706 4.074970 GTCCAGCATTATTGTGATAGGGG 58.925 47.826 0.00 0.00 0.00 4.79
4330 4793 6.544197 ACGGTTCATGCCAACACATATTATAA 59.456 34.615 0.32 0.00 0.00 0.98
4336 4799 2.192664 ACGGTTCATGCCAACACATA 57.807 45.000 0.32 0.00 0.00 2.29
4342 4805 5.461032 AGAAAAATAACGGTTCATGCCAA 57.539 34.783 0.00 0.00 0.00 4.52
4440 4903 9.726232 CTTGTATTGTAATCAGTGATTGGATTG 57.274 33.333 25.48 5.84 35.49 2.67
4470 4933 5.819991 AGAAAGGAAAGTGAAGGCATCATA 58.180 37.500 0.00 0.00 40.97 2.15
4472 4935 4.104383 AGAAAGGAAAGTGAAGGCATCA 57.896 40.909 0.00 0.00 35.05 3.07
4517 4980 7.229506 ACTGGCTGAAAAATATAGCATAGTTCC 59.770 37.037 0.00 0.00 39.15 3.62
4535 4998 1.134220 ACACCGAGAAAAACTGGCTGA 60.134 47.619 0.00 0.00 0.00 4.26
4547 5010 9.590451 CAAGTTATAACCTAAAATACACCGAGA 57.410 33.333 12.05 0.00 0.00 4.04
4567 5030 7.148086 GCATCCTCATAAATCACAACCAAGTTA 60.148 37.037 0.00 0.00 0.00 2.24
4584 5047 4.042187 GGTACCAAATCCTAGCATCCTCAT 59.958 45.833 7.15 0.00 0.00 2.90
4663 5126 7.400052 AGGCATAAATTAGGAAAGTGGAATGTT 59.600 33.333 0.00 0.00 0.00 2.71
4665 5128 7.352079 AGGCATAAATTAGGAAAGTGGAATG 57.648 36.000 0.00 0.00 0.00 2.67
4696 5159 7.423844 ACTATGAACAGAATCATGTACAGGA 57.576 36.000 13.29 13.29 40.21 3.86
4697 5160 9.770097 AATACTATGAACAGAATCATGTACAGG 57.230 33.333 0.00 0.00 40.21 4.00
4706 5169 8.983724 GCACCTAAGAATACTATGAACAGAATC 58.016 37.037 0.00 0.00 0.00 2.52
4707 5170 8.709308 AGCACCTAAGAATACTATGAACAGAAT 58.291 33.333 0.00 0.00 0.00 2.40
4708 5171 7.981789 CAGCACCTAAGAATACTATGAACAGAA 59.018 37.037 0.00 0.00 0.00 3.02
4709 5172 7.342026 TCAGCACCTAAGAATACTATGAACAGA 59.658 37.037 0.00 0.00 0.00 3.41
4710 5173 7.492524 TCAGCACCTAAGAATACTATGAACAG 58.507 38.462 0.00 0.00 0.00 3.16
4711 5174 7.418337 TCAGCACCTAAGAATACTATGAACA 57.582 36.000 0.00 0.00 0.00 3.18
4712 5175 8.768955 CATTCAGCACCTAAGAATACTATGAAC 58.231 37.037 0.00 0.00 31.26 3.18
4713 5176 8.704668 TCATTCAGCACCTAAGAATACTATGAA 58.295 33.333 0.00 0.00 31.26 2.57
4714 5177 8.250143 TCATTCAGCACCTAAGAATACTATGA 57.750 34.615 0.00 0.00 31.26 2.15
4717 5180 8.307483 GCTATCATTCAGCACCTAAGAATACTA 58.693 37.037 0.00 0.00 38.93 1.82
4718 5181 7.016072 AGCTATCATTCAGCACCTAAGAATACT 59.984 37.037 0.00 0.00 41.66 2.12
4719 5182 7.158021 AGCTATCATTCAGCACCTAAGAATAC 58.842 38.462 0.00 0.00 41.66 1.89
4720 5183 7.308450 AGCTATCATTCAGCACCTAAGAATA 57.692 36.000 0.00 0.00 41.66 1.75
4755 5218 9.391006 CCACTAAACCTGCACTATTAAGAATAA 57.609 33.333 0.00 0.00 0.00 1.40
4892 5355 4.973168 AGACACAATGGTCTCAGCTAAAA 58.027 39.130 0.00 0.00 44.63 1.52
4931 5394 5.654650 TGGTTTCTTTGTACACAAGTCCAAT 59.345 36.000 0.00 0.00 37.15 3.16
5023 5486 8.998989 CGATTATATTTGTACAAAACAGCAGTG 58.001 33.333 23.97 8.19 39.87 3.66
5062 5525 3.980775 CCAGGACACGTAAAGCAATTTTG 59.019 43.478 0.00 0.00 0.00 2.44
5083 5546 3.243401 CCCGGCTAAGATATTTGTTTGCC 60.243 47.826 8.05 8.05 41.49 4.52
5188 5651 9.787435 AACAGTACTGAAAAGTATGATTTACCA 57.213 29.630 29.30 0.00 0.00 3.25
5242 5705 5.880332 ACCACGTGCTTGTAATGATTAATCT 59.120 36.000 16.24 0.00 0.00 2.40
5245 5708 5.950758 AACCACGTGCTTGTAATGATTAA 57.049 34.783 10.91 0.00 0.00 1.40
5246 5709 5.950758 AAACCACGTGCTTGTAATGATTA 57.049 34.783 10.91 0.00 0.00 1.75
5247 5710 4.846779 AAACCACGTGCTTGTAATGATT 57.153 36.364 10.91 0.00 0.00 2.57
5248 5711 4.846779 AAAACCACGTGCTTGTAATGAT 57.153 36.364 10.91 0.00 0.00 2.45
5262 5725 8.573035 TCAGACAAATAGAATACCAAAAACCAC 58.427 33.333 0.00 0.00 0.00 4.16
5277 5740 7.327761 CAGAAAGGCAACAAATCAGACAAATAG 59.672 37.037 0.00 0.00 41.41 1.73
5278 5741 7.147312 CAGAAAGGCAACAAATCAGACAAATA 58.853 34.615 0.00 0.00 41.41 1.40
5308 5771 9.956720 GACCTGGAAAATAAGATGATAAACATG 57.043 33.333 0.00 0.00 39.56 3.21
5354 5817 4.644954 ACAACTTTCTTCGTGAAAACGAC 58.355 39.130 0.00 0.00 43.25 4.34
5569 6040 9.678260 AGAATGATTTTAGCAACTACTGAGAAT 57.322 29.630 0.00 0.00 0.00 2.40
5576 6047 6.127897 ACCTGCAGAATGATTTTAGCAACTAC 60.128 38.462 17.39 0.00 39.69 2.73
5675 6146 6.324770 ACACAGGATTTCAGTTTTTCAGGATT 59.675 34.615 0.00 0.00 0.00 3.01
5687 6158 1.466167 CTCCGCAACACAGGATTTCAG 59.534 52.381 0.00 0.00 35.75 3.02
5704 6175 3.448660 AGGTTTTCAATGCAATAGCCTCC 59.551 43.478 0.00 0.00 41.13 4.30
5731 6202 2.360801 TCTTTTCCGGGCAGTTTTTCTG 59.639 45.455 0.00 0.00 46.12 3.02
5852 6323 2.177811 TCCCCATGACCGGTACATAA 57.822 50.000 7.34 0.00 0.00 1.90
6021 6520 3.119101 GGCTATCGACTGTTTCTTCTCCA 60.119 47.826 0.00 0.00 0.00 3.86
6162 6661 2.083774 GAATGGTGCATCGAGTTCCAA 58.916 47.619 0.00 0.00 0.00 3.53
6224 6726 1.697982 ACTACTGGAGGGGTGTTTGTC 59.302 52.381 0.00 0.00 0.00 3.18
6287 6789 8.944029 CATCAATCTTCAAAAGTGATAGTGACT 58.056 33.333 0.00 0.00 31.18 3.41
6317 6819 2.252260 CGAAGCCGTTTGCAGGTG 59.748 61.111 0.00 0.00 44.83 4.00
6573 7084 2.107950 TCAGAATTTACCCAGGTGCG 57.892 50.000 0.00 0.00 0.00 5.34
6651 7162 1.404748 GGGACTACTTCGTAGAGGCAC 59.595 57.143 7.94 0.00 38.29 5.01
6658 7169 1.089920 GTGCTCGGGACTACTTCGTA 58.910 55.000 0.00 0.00 0.00 3.43
6728 7251 1.070134 ACGGTTAGTCTGAAGCTTGCA 59.930 47.619 2.10 0.64 0.00 4.08
6782 7305 7.548075 GTCATCTATTTTGAAACGGAAGGAGTA 59.452 37.037 0.00 0.00 0.00 2.59
6783 7306 6.371825 GTCATCTATTTTGAAACGGAAGGAGT 59.628 38.462 0.00 0.00 0.00 3.85
6784 7307 6.183360 GGTCATCTATTTTGAAACGGAAGGAG 60.183 42.308 0.00 0.00 0.00 3.69
6785 7308 5.646360 GGTCATCTATTTTGAAACGGAAGGA 59.354 40.000 0.00 0.00 0.00 3.36
6786 7309 5.163652 GGGTCATCTATTTTGAAACGGAAGG 60.164 44.000 0.00 0.00 0.00 3.46
6787 7310 5.414454 TGGGTCATCTATTTTGAAACGGAAG 59.586 40.000 0.00 0.00 0.00 3.46
6788 7311 5.317808 TGGGTCATCTATTTTGAAACGGAA 58.682 37.500 0.00 0.00 0.00 4.30
6789 7312 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
6790 7313 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
6791 7314 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
6833 7356 9.956720 CTGTTTCAAAATAGATGACTCAACTTT 57.043 29.630 0.00 0.00 29.67 2.66
6834 7357 9.342308 TCTGTTTCAAAATAGATGACTCAACTT 57.658 29.630 0.00 0.00 32.24 2.66
6835 7358 8.908786 TCTGTTTCAAAATAGATGACTCAACT 57.091 30.769 0.00 0.00 32.24 3.16
6836 7359 8.233190 CCTCTGTTTCAAAATAGATGACTCAAC 58.767 37.037 2.91 0.00 35.92 3.18
6837 7360 8.156820 TCCTCTGTTTCAAAATAGATGACTCAA 58.843 33.333 2.91 0.00 35.92 3.02
6838 7361 7.679783 TCCTCTGTTTCAAAATAGATGACTCA 58.320 34.615 2.91 0.00 35.92 3.41
6839 7362 8.553459 TTCCTCTGTTTCAAAATAGATGACTC 57.447 34.615 6.69 0.00 35.92 3.36
6840 7363 8.160106 ACTTCCTCTGTTTCAAAATAGATGACT 58.840 33.333 6.69 0.00 35.92 3.41
6841 7364 8.329203 ACTTCCTCTGTTTCAAAATAGATGAC 57.671 34.615 6.69 0.00 35.92 3.06
6842 7365 9.658799 CTACTTCCTCTGTTTCAAAATAGATGA 57.341 33.333 2.91 3.55 35.92 2.92
6843 7366 8.887717 CCTACTTCCTCTGTTTCAAAATAGATG 58.112 37.037 2.91 1.49 35.92 2.90
6844 7367 8.606830 ACCTACTTCCTCTGTTTCAAAATAGAT 58.393 33.333 2.91 0.00 35.92 1.98
6845 7368 7.878127 CACCTACTTCCTCTGTTTCAAAATAGA 59.122 37.037 2.56 2.56 35.32 1.98
6846 7369 7.361286 GCACCTACTTCCTCTGTTTCAAAATAG 60.361 40.741 0.00 0.00 0.00 1.73
6847 7370 6.430000 GCACCTACTTCCTCTGTTTCAAAATA 59.570 38.462 0.00 0.00 0.00 1.40
6848 7371 5.241728 GCACCTACTTCCTCTGTTTCAAAAT 59.758 40.000 0.00 0.00 0.00 1.82
6849 7372 4.578928 GCACCTACTTCCTCTGTTTCAAAA 59.421 41.667 0.00 0.00 0.00 2.44
6850 7373 4.134563 GCACCTACTTCCTCTGTTTCAAA 58.865 43.478 0.00 0.00 0.00 2.69
6851 7374 3.391296 AGCACCTACTTCCTCTGTTTCAA 59.609 43.478 0.00 0.00 0.00 2.69
6852 7375 2.972713 AGCACCTACTTCCTCTGTTTCA 59.027 45.455 0.00 0.00 0.00 2.69
6853 7376 3.686916 AGCACCTACTTCCTCTGTTTC 57.313 47.619 0.00 0.00 0.00 2.78
6854 7377 3.056749 CGTAGCACCTACTTCCTCTGTTT 60.057 47.826 1.46 0.00 35.06 2.83
6855 7378 2.492484 CGTAGCACCTACTTCCTCTGTT 59.508 50.000 1.46 0.00 35.06 3.16
6856 7379 2.093106 CGTAGCACCTACTTCCTCTGT 58.907 52.381 1.46 0.00 35.06 3.41
6857 7380 1.405821 CCGTAGCACCTACTTCCTCTG 59.594 57.143 1.46 0.00 35.06 3.35
6858 7381 1.284198 TCCGTAGCACCTACTTCCTCT 59.716 52.381 1.46 0.00 35.06 3.69
6859 7382 1.760192 TCCGTAGCACCTACTTCCTC 58.240 55.000 1.46 0.00 35.06 3.71
6860 7383 2.032620 CATCCGTAGCACCTACTTCCT 58.967 52.381 1.46 0.00 35.06 3.36
6861 7384 1.538419 GCATCCGTAGCACCTACTTCC 60.538 57.143 1.46 0.00 35.06 3.46
6862 7385 1.409427 AGCATCCGTAGCACCTACTTC 59.591 52.381 1.46 0.00 35.06 3.01
6863 7386 1.486211 AGCATCCGTAGCACCTACTT 58.514 50.000 1.46 0.00 35.06 2.24
6864 7387 1.137086 CAAGCATCCGTAGCACCTACT 59.863 52.381 1.46 0.00 35.06 2.57
6865 7388 1.571919 CAAGCATCCGTAGCACCTAC 58.428 55.000 0.00 0.00 33.99 3.18
7029 7554 4.798026 TCCGAATACGCGCGCCAA 62.798 61.111 32.58 16.78 38.29 4.52
7064 7589 1.911269 TACTCCGAGGCAGCAACCA 60.911 57.895 0.00 0.00 0.00 3.67
7072 7597 1.661341 TACGAGAAGTACTCCGAGGC 58.339 55.000 15.93 0.00 42.18 4.70
7113 8625 2.280628 CCCGCTTATCTCAGTTTGGTC 58.719 52.381 0.00 0.00 0.00 4.02
7169 8681 5.821516 ACAAAACGGTCTGAACATTTACA 57.178 34.783 0.00 0.00 0.00 2.41
7175 8687 3.082548 TCCAAACAAAACGGTCTGAACA 58.917 40.909 0.00 0.00 0.00 3.18
7219 8731 0.240945 GGTCCACAAACCGATGCTTG 59.759 55.000 0.00 0.00 0.00 4.01
7221 8734 0.606401 CTGGTCCACAAACCGATGCT 60.606 55.000 0.00 0.00 42.62 3.79
7302 8816 2.429610 GGCTTGAGGTGTCGGAGTATTA 59.570 50.000 0.00 0.00 0.00 0.98
7304 8818 0.824759 GGCTTGAGGTGTCGGAGTAT 59.175 55.000 0.00 0.00 0.00 2.12
7319 8833 2.133359 GACGGGGTTTAGGTGGGCTT 62.133 60.000 0.00 0.00 0.00 4.35
7436 8951 1.090052 GTAGCAATGGAGGGCACGAC 61.090 60.000 0.00 0.00 0.00 4.34
7437 8952 1.220749 GTAGCAATGGAGGGCACGA 59.779 57.895 0.00 0.00 0.00 4.35
7442 8957 0.744414 CCGTGTGTAGCAATGGAGGG 60.744 60.000 0.00 0.00 0.00 4.30
7463 8978 0.392461 GGAGGACAAATAGCGTGGCA 60.392 55.000 0.00 0.00 0.00 4.92
7505 9020 1.202746 TGGTACATGTGCAGCAGACAA 60.203 47.619 16.11 0.00 0.00 3.18
7535 9050 2.728397 CCATGCATGGTGATCCCTG 58.272 57.895 33.68 8.38 43.05 4.45
7579 9094 1.616994 GCATTGGGGGCAAAGTAGTCT 60.617 52.381 0.00 0.00 0.00 3.24
7621 9339 4.487714 AGAGGCCATCGAAGACATTTTA 57.512 40.909 5.01 0.00 42.51 1.52
7675 9413 6.538021 CCTACCACATTCTTCTTCAAGATGAG 59.462 42.308 3.40 0.00 38.50 2.90
7695 9433 4.202409 CCAGAGAATCCAATCCTTCCTACC 60.202 50.000 0.00 0.00 33.66 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.