AutoCloner

Multiple sequence alignment - TraesCS3A01G320300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G320300	chr3A	100.000	3068	0	0	1	3068	562913377	562916444	0.000000e+00	5666.0
1	TraesCS3A01G320300	chr3A	96.372	827	28	2	1332	2158	563394892	563395716	0.000000e+00	1360.0
2	TraesCS3A01G320300	chr3A	90.120	830	41	11	517	1337	563388645	563389442	0.000000e+00	1040.0
3	TraesCS3A01G320300	chr3A	86.858	487	45	10	1	470	563387922	563388406	7.530000e-146	527.0
4	TraesCS3A01G320300	chr3D	93.589	1591	56	14	606	2158	425152669	425151087	0.000000e+00	2331.0
5	TraesCS3A01G320300	chr3D	86.094	640	37	14	1	614	425154391	425153778	2.580000e-180	641.0
6	TraesCS3A01G320300	chr3D	100.000	32	0	0	147	178	107657887	107657856	3.300000e-05	60.2
7	TraesCS3A01G320300	chr3D	82.432	74	8	3	142	212	410995112	410995041	3.300000e-05	60.2
8	TraesCS3A01G320300	chr3B	94.449	1261	59	3	899	2159	555156172	555154923	0.000000e+00	1930.0
9	TraesCS3A01G320300	chr3B	93.612	1221	61	6	885	2094	555245086	555243872	0.000000e+00	1807.0
10	TraesCS3A01G320300	chr3B	90.656	503	16	21	157	632	555269207	555268709	9.280000e-180	640.0
11	TraesCS3A01G320300	chr3B	86.420	324	23	6	625	932	555245392	555245074	4.900000e-88	335.0
12	TraesCS3A01G320300	chr3B	96.835	158	5	0	1	158	555269412	555269255	6.520000e-67	265.0
13	TraesCS3A01G320300	chr3B	85.405	185	18	7	754	932	555156358	555156177	1.880000e-42	183.0
14	TraesCS3A01G320300	chr3B	97.436	39	1	0	2121	2159	555243868	555243830	1.970000e-07	67.6
15	TraesCS3A01G320300	chr3B	87.500	56	6	1	23	77	555269338	555269283	2.550000e-06	63.9
16	TraesCS3A01G320300	chr7A	97.206	859	10	8	2160	3006	497654323	497653467	0.000000e+00	1441.0
17	TraesCS3A01G320300	chr7A	76.697	1193	239	23	993	2158	698729469	698730649	7.220000e-176	627.0
18	TraesCS3A01G320300	chr7A	78.617	781	147	7	1395	2161	699066863	699067637	1.640000e-137	499.0
19	TraesCS3A01G320300	chr2D	87.225	908	46	27	2189	3063	503911889	503912759	0.000000e+00	970.0
20	TraesCS3A01G320300	chr2D	95.122	41	2	0	142	182	610413366	610413326	7.100000e-07	65.8
21	TraesCS3A01G320300	chr7B	78.358	1169	231	15	993	2148	690904474	690905633	0.000000e+00	737.0
22	TraesCS3A01G320300	chr7B	79.359	562	106	6	1517	2070	692339888	692339329	1.330000e-103	387.0
23	TraesCS3A01G320300	chr7D	78.600	500	102	5	1568	2065	607109873	607110369	2.950000e-85	326.0
24	TraesCS3A01G320300	chr7D	80.702	171	20	7	2382	2551	8455453	8455295	1.490000e-23	121.0
25	TraesCS3A01G320300	chr7D	93.023	43	3	0	138	180	108285689	108285731	2.550000e-06	63.9
26	TraesCS3A01G320300	chr2A	78.205	312	43	16	2408	2711	746858388	746858682	3.140000e-40	176.0
27	TraesCS3A01G320300	chr1A	85.143	175	23	3	2382	2554	516170735	516170562	3.140000e-40	176.0
28	TraesCS3A01G320300	chr5D	86.441	118	15	1	2362	2478	525467046	525467163	8.930000e-26	128.0
29	TraesCS3A01G320300	chr5D	79.878	164	28	5	2317	2478	327613975	327613815	6.950000e-22	115.0
30	TraesCS3A01G320300	chr1B	89.247	93	7	3	2461	2551	327337153	327337244	2.500000e-21	113.0
31	TraesCS3A01G320300	chr4A	95.455	44	1	1	2488	2530	170122535	170122578	5.490000e-08	69.4
32	TraesCS3A01G320300	chr5B	84.375	64	10	0	118	181	564986222	564986159	2.550000e-06	63.9
33	TraesCS3A01G320300	chr6A	81.944	72	13	0	104	175	594805478	594805549	9.190000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G320300	chr3A	562913377	562916444	3067	False	5666.000000	5666	100.000000	1	3068	1	chr3A.!!$F1	3067
1	TraesCS3A01G320300	chr3A	563394892	563395716	824	False	1360.000000	1360	96.372000	1332	2158	1	chr3A.!!$F2	826
2	TraesCS3A01G320300	chr3A	563387922	563389442	1520	False	783.500000	1040	88.489000	1	1337	2	chr3A.!!$F3	1336
3	TraesCS3A01G320300	chr3D	425151087	425154391	3304	True	1486.000000	2331	89.841500	1	2158	2	chr3D.!!$R3	2157
4	TraesCS3A01G320300	chr3B	555154923	555156358	1435	True	1056.500000	1930	89.927000	754	2159	2	chr3B.!!$R1	1405
5	TraesCS3A01G320300	chr3B	555243830	555245392	1562	True	736.533333	1807	92.489333	625	2159	3	chr3B.!!$R2	1534
6	TraesCS3A01G320300	chr3B	555268709	555269412	703	True	322.966667	640	91.663667	1	632	3	chr3B.!!$R3	631
7	TraesCS3A01G320300	chr7A	497653467	497654323	856	True	1441.000000	1441	97.206000	2160	3006	1	chr7A.!!$R1	846
8	TraesCS3A01G320300	chr7A	698729469	698730649	1180	False	627.000000	627	76.697000	993	2158	1	chr7A.!!$F1	1165
9	TraesCS3A01G320300	chr7A	699066863	699067637	774	False	499.000000	499	78.617000	1395	2161	1	chr7A.!!$F2	766
10	TraesCS3A01G320300	chr2D	503911889	503912759	870	False	970.000000	970	87.225000	2189	3063	1	chr2D.!!$F1	874
11	TraesCS3A01G320300	chr7B	690904474	690905633	1159	False	737.000000	737	78.358000	993	2148	1	chr7B.!!$F1	1155
12	TraesCS3A01G320300	chr7B	692339329	692339888	559	True	387.000000	387	79.359000	1517	2070	1	chr7B.!!$R1	553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
666	2052	0.320073	TACTCGCCGTTGTTTCCCAG	60.32	55.0	0.0	0.0	0.0	4.45	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2335	4117	1.679977	GGGCTGCAATGGAGCTTCA	60.68	57.895	25.07	0.0	36.63	3.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
99	102	7.539034	AGCCCATGTAACTTTTAATTTGACT	57.461	32.000	0.00	0.00	0.00	3.41
102	105	7.655732	GCCCATGTAACTTTTAATTTGACTGTT	59.344	33.333	0.00	0.00	0.00	3.16
112	115	7.945033	TTTAATTTGACTGTTGGAATTCAGC	57.055	32.000	7.93	0.00	35.37	4.26
263	323	7.698836	AGCAACACTTTATTTCATCACAAAC	57.301	32.000	0.00	0.00	0.00	2.93
269	329	8.474025	ACACTTTATTTCATCACAAACAAGGAA	58.526	29.630	0.00	0.00	0.00	3.36
288	349	6.158023	AGGAACGTCTATTACATCCGAAAT	57.842	37.500	0.00	0.00	38.30	2.17
306	367	7.641249	TCCGAAATAATAAAACTAGGGGGAAA	58.359	34.615	0.00	0.00	0.00	3.13
353	419	9.581099	AAGTAAAAACATGTCTAACAAACAAGG	57.419	29.630	0.00	0.00	0.00	3.61
354	420	8.962679	AGTAAAAACATGTCTAACAAACAAGGA	58.037	29.630	0.00	0.00	0.00	3.36
445	522	4.228567	GAGCTAGGGCACGGCTCC	62.229	72.222	21.03	7.78	44.46	4.70
446	523	4.787280	AGCTAGGGCACGGCTCCT	62.787	66.667	3.69	9.55	41.70	3.69
448	525	2.990479	CTAGGGCACGGCTCCTTT	59.010	61.111	9.78	0.00	32.93	3.11
470	547	6.627087	TTTCTCTCTCTCTCTCTCTCTCTT	57.373	41.667	0.00	0.00	0.00	2.85
471	548	6.627087	TTCTCTCTCTCTCTCTCTCTCTTT	57.373	41.667	0.00	0.00	0.00	2.52
472	549	6.627087	TCTCTCTCTCTCTCTCTCTCTTTT	57.373	41.667	0.00	0.00	0.00	2.27
473	550	6.644347	TCTCTCTCTCTCTCTCTCTCTTTTC	58.356	44.000	0.00	0.00	0.00	2.29
474	551	5.745227	TCTCTCTCTCTCTCTCTCTTTTCC	58.255	45.833	0.00	0.00	0.00	3.13
475	552	4.513442	TCTCTCTCTCTCTCTCTTTTCCG	58.487	47.826	0.00	0.00	0.00	4.30
476	553	4.019681	TCTCTCTCTCTCTCTCTTTTCCGT	60.020	45.833	0.00	0.00	0.00	4.69
477	554	4.658063	TCTCTCTCTCTCTCTTTTCCGTT	58.342	43.478	0.00	0.00	0.00	4.44
478	555	5.074115	TCTCTCTCTCTCTCTTTTCCGTTT	58.926	41.667	0.00	0.00	0.00	3.60
479	556	5.048364	TCTCTCTCTCTCTCTTTTCCGTTTG	60.048	44.000	0.00	0.00	0.00	2.93
480	557	4.585162	TCTCTCTCTCTCTTTTCCGTTTGT	59.415	41.667	0.00	0.00	0.00	2.83
481	558	5.768662	TCTCTCTCTCTCTTTTCCGTTTGTA	59.231	40.000	0.00	0.00	0.00	2.41
482	559	6.434652	TCTCTCTCTCTCTTTTCCGTTTGTAT	59.565	38.462	0.00	0.00	0.00	2.29
483	560	6.390721	TCTCTCTCTCTTTTCCGTTTGTATG	58.609	40.000	0.00	0.00	0.00	2.39
498	575	3.449746	TGTATGGGGGAAGGAACAAAG	57.550	47.619	0.00	0.00	0.00	2.77
504	581	2.043115	GGGGGAAGGAACAAAGGAATCT	59.957	50.000	0.00	0.00	0.00	2.40
646	2032	2.355197	TGTTTATGATGCCACTCCGTG	58.645	47.619	0.00	0.00	0.00	4.94
666	2052	0.320073	TACTCGCCGTTGTTTCCCAG	60.320	55.000	0.00	0.00	0.00	4.45
680	2066	3.992943	TTCCCAGTTACGGATGAACAT	57.007	42.857	0.00	0.00	0.00	2.71
681	2067	3.992943	TCCCAGTTACGGATGAACATT	57.007	42.857	0.00	0.00	0.00	2.71
698	2084	3.950397	ACATTAGGAATTGCAGAACGGA	58.050	40.909	0.00	0.00	0.00	4.69
705	2091	2.859165	ATTGCAGAACGGAGAGGAAA	57.141	45.000	0.00	0.00	0.00	3.13
717	2103	3.481453	GGAGAGGAAACTGAAAACAGCT	58.519	45.455	0.00	0.00	44.43	4.24
718	2104	4.642429	GGAGAGGAAACTGAAAACAGCTA	58.358	43.478	0.00	0.00	44.43	3.32
719	2105	4.452795	GGAGAGGAAACTGAAAACAGCTAC	59.547	45.833	0.00	0.00	44.43	3.58
720	2106	5.297569	AGAGGAAACTGAAAACAGCTACT	57.702	39.130	0.00	0.00	44.43	2.57
721	2107	5.059833	AGAGGAAACTGAAAACAGCTACTG	58.940	41.667	0.00	0.00	44.43	2.74
743	2129	3.981071	AGATGTTCAAATCTGACCGGA	57.019	42.857	9.46	0.00	35.54	5.14
744	2130	4.286297	AGATGTTCAAATCTGACCGGAA	57.714	40.909	9.46	0.00	35.54	4.30
745	2131	4.651778	AGATGTTCAAATCTGACCGGAAA	58.348	39.130	9.46	0.00	35.54	3.13
746	2132	5.070001	AGATGTTCAAATCTGACCGGAAAA	58.930	37.500	9.46	0.00	35.54	2.29
747	2133	4.829064	TGTTCAAATCTGACCGGAAAAG	57.171	40.909	9.46	1.88	0.00	2.27
748	2134	3.568007	TGTTCAAATCTGACCGGAAAAGG	59.432	43.478	9.46	0.00	37.30	3.11
749	2135	2.159382	TCAAATCTGACCGGAAAAGGC	58.841	47.619	9.46	0.00	33.69	4.35
752	2147	0.673644	ATCTGACCGGAAAAGGCGTG	60.674	55.000	9.46	0.00	33.69	5.34
858	2264	1.060553	CCCACACGAATCGTCAAATCG	59.939	52.381	4.88	0.00	38.32	3.34
1166	2622	3.834799	CTACCCCGACGGCCTCAC	61.835	72.222	8.86	0.00	33.26	3.51
1208	2664	1.458398	TCAGTCTTCCTCGAGCTCAG	58.542	55.000	15.40	10.09	0.00	3.35
1306	2771	2.808206	CCGATCCCCAGCCAGTACC	61.808	68.421	0.00	0.00	0.00	3.34
1341	2806	3.724508	AACTCCGCTGATGACTATGAG	57.275	47.619	0.00	0.00	0.00	2.90
1452	2920	0.108804	TCATCGAGTTGAAGGACGCC	60.109	55.000	0.00	0.00	0.00	5.68
1972	3471	8.160765	TCAACTCTTCAAATAGAATGGTTGGTA	58.839	33.333	15.76	3.79	42.36	3.25
2058	3819	2.094442	GGAGAAAGCAGCTAAGACTCGT	60.094	50.000	0.00	0.00	0.00	4.18
2098	3872	5.710984	ACCGTAGATTAACTTGAGAGTGTG	58.289	41.667	0.00	0.00	35.91	3.82
2099	3873	5.243283	ACCGTAGATTAACTTGAGAGTGTGT	59.757	40.000	0.00	0.00	35.91	3.72
2117	3891	7.231722	AGAGTGTGTAGTTAGTTCAGTTGAGAT	59.768	37.037	0.00	0.00	0.00	2.75
2118	3892	8.405418	AGTGTGTAGTTAGTTCAGTTGAGATA	57.595	34.615	0.00	0.00	0.00	1.98
2496	4278	0.693049	AACCTTGACGGAGCTCCAAT	59.307	50.000	31.67	19.58	36.31	3.16
2943	4740	2.503356	ACTTGAGAATTGAGGGAGCGAT	59.497	45.455	0.00	0.00	0.00	4.58
3017	4814	3.304257	GGTCGCGTCGGAGATAAGATAAA	60.304	47.826	5.77	0.00	40.67	1.40
3034	4841	0.112412	AAAAGAGCGGTTGGTGGGAT	59.888	50.000	0.00	0.00	0.00	3.85
3063	4870	0.317770	CACGTTGGTGTGTTGATGCC	60.318	55.000	0.00	0.00	39.38	4.40
3064	4871	0.749818	ACGTTGGTGTGTTGATGCCA	60.750	50.000	0.00	0.00	0.00	4.92
3065	4872	0.317770	CGTTGGTGTGTTGATGCCAC	60.318	55.000	0.00	0.00	0.00	5.01
3067	4874	2.953821	GGTGTGTTGATGCCACCG	59.046	61.111	0.00	0.00	39.29	4.94

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
99	102	7.984050	TGATAAAAACAAAGCTGAATTCCAACA	59.016	29.630	2.27	0.00	0.00	3.33
195	247	3.578688	CCTTCATAGCACCAAAAGTTGC	58.421	45.455	0.00	0.00	0.00	4.17
242	294	8.474025	TCCTTGTTTGTGATGAAATAAAGTGTT	58.526	29.630	0.00	0.00	0.00	3.32
243	295	8.006298	TCCTTGTTTGTGATGAAATAAAGTGT	57.994	30.769	0.00	0.00	0.00	3.55
263	323	4.928601	TCGGATGTAATAGACGTTCCTTG	58.071	43.478	0.00	0.00	32.99	3.61
335	401	3.821033	GGCTCCTTGTTTGTTAGACATGT	59.179	43.478	0.00	0.00	0.00	3.21
344	410	0.878961	GTCGACGGCTCCTTGTTTGT	60.879	55.000	0.00	0.00	0.00	2.83
346	412	1.663702	CGTCGACGGCTCCTTGTTT	60.664	57.895	29.70	0.00	35.37	2.83
350	416	2.473664	CTTGTCGTCGACGGCTCCTT	62.474	60.000	38.22	0.00	45.41	3.36
351	417	2.979197	CTTGTCGTCGACGGCTCCT	61.979	63.158	38.22	0.00	45.41	3.69
353	419	2.504244	CCTTGTCGTCGACGGCTC	60.504	66.667	38.22	26.42	45.41	4.70
354	420	4.719369	GCCTTGTCGTCGACGGCT	62.719	66.667	38.22	0.00	45.41	5.52
445	522	6.648192	AGAGAGAGAGAGAGAGAGAGAAAAG	58.352	44.000	0.00	0.00	0.00	2.27
446	523	6.627087	AGAGAGAGAGAGAGAGAGAGAAAA	57.373	41.667	0.00	0.00	0.00	2.29
448	525	6.627087	AAAGAGAGAGAGAGAGAGAGAGAA	57.373	41.667	0.00	0.00	0.00	2.87
470	547	2.555670	CCTTCCCCCATACAAACGGAAA	60.556	50.000	0.00	0.00	32.39	3.13
471	548	1.004979	CCTTCCCCCATACAAACGGAA	59.995	52.381	0.00	0.00	0.00	4.30
472	549	0.621609	CCTTCCCCCATACAAACGGA	59.378	55.000	0.00	0.00	0.00	4.69
473	550	0.621609	TCCTTCCCCCATACAAACGG	59.378	55.000	0.00	0.00	0.00	4.44
474	551	2.089201	GTTCCTTCCCCCATACAAACG	58.911	52.381	0.00	0.00	0.00	3.60
475	552	3.163616	TGTTCCTTCCCCCATACAAAC	57.836	47.619	0.00	0.00	0.00	2.93
476	553	3.905493	TTGTTCCTTCCCCCATACAAA	57.095	42.857	0.00	0.00	0.00	2.83
477	554	3.501385	CCTTTGTTCCTTCCCCCATACAA	60.501	47.826	0.00	0.00	0.00	2.41
478	555	2.042433	CCTTTGTTCCTTCCCCCATACA	59.958	50.000	0.00	0.00	0.00	2.29
479	556	2.310647	TCCTTTGTTCCTTCCCCCATAC	59.689	50.000	0.00	0.00	0.00	2.39
480	557	2.650013	TCCTTTGTTCCTTCCCCCATA	58.350	47.619	0.00	0.00	0.00	2.74
481	558	1.466858	TCCTTTGTTCCTTCCCCCAT	58.533	50.000	0.00	0.00	0.00	4.00
482	559	1.236708	TTCCTTTGTTCCTTCCCCCA	58.763	50.000	0.00	0.00	0.00	4.96
483	560	2.043115	AGATTCCTTTGTTCCTTCCCCC	59.957	50.000	0.00	0.00	0.00	5.40
498	575	3.600388	ACCGTCTGATTTGTCAGATTCC	58.400	45.455	10.91	0.00	46.81	3.01
504	581	2.900716	TGTGACCGTCTGATTTGTCA	57.099	45.000	0.00	3.67	35.50	3.58
646	2032	0.600782	TGGGAAACAACGGCGAGTAC	60.601	55.000	16.62	9.44	0.00	2.73
666	2052	6.183360	TGCAATTCCTAATGTTCATCCGTAAC	60.183	38.462	0.00	0.00	0.00	2.50
680	2066	3.369471	CCTCTCCGTTCTGCAATTCCTAA	60.369	47.826	0.00	0.00	0.00	2.69
681	2067	2.168521	CCTCTCCGTTCTGCAATTCCTA	59.831	50.000	0.00	0.00	0.00	2.94
698	2084	5.396884	ACAGTAGCTGTTTTCAGTTTCCTCT	60.397	40.000	0.00	0.00	42.59	3.69
705	2091	6.102897	ACATCTACAGTAGCTGTTTTCAGT	57.897	37.500	10.72	0.00	42.59	3.41
717	2103	6.330278	CGGTCAGATTTGAACATCTACAGTA	58.670	40.000	1.81	0.00	41.28	2.74
718	2104	5.171476	CGGTCAGATTTGAACATCTACAGT	58.829	41.667	1.81	0.00	41.28	3.55
719	2105	4.568359	CCGGTCAGATTTGAACATCTACAG	59.432	45.833	1.81	0.00	41.28	2.74
720	2106	4.221924	TCCGGTCAGATTTGAACATCTACA	59.778	41.667	0.00	0.00	41.28	2.74
721	2107	4.755411	TCCGGTCAGATTTGAACATCTAC	58.245	43.478	0.00	0.00	41.28	2.59
743	2129	1.064952	CGTCTTTGTTCCACGCCTTTT	59.935	47.619	0.00	0.00	0.00	2.27
744	2130	0.661020	CGTCTTTGTTCCACGCCTTT	59.339	50.000	0.00	0.00	0.00	3.11
745	2131	1.164041	CCGTCTTTGTTCCACGCCTT	61.164	55.000	0.00	0.00	32.03	4.35
746	2132	1.597027	CCGTCTTTGTTCCACGCCT	60.597	57.895	0.00	0.00	32.03	5.52
747	2133	1.595929	TCCGTCTTTGTTCCACGCC	60.596	57.895	0.00	0.00	32.03	5.68
748	2134	0.878961	AGTCCGTCTTTGTTCCACGC	60.879	55.000	0.00	0.00	32.03	5.34
749	2135	0.859232	CAGTCCGTCTTTGTTCCACG	59.141	55.000	0.00	0.00	0.00	4.94
752	2147	2.031683	CACAACAGTCCGTCTTTGTTCC	59.968	50.000	0.00	0.00	33.06	3.62
858	2264	7.111353	TGTTTTGTTTTGTTTGAGCTGTTAC	57.889	32.000	0.00	0.00	0.00	2.50
1166	2622	0.173708	GTAGTCCTTGCTGTCCTCGG	59.826	60.000	0.00	0.00	0.00	4.63
1208	2664	2.182030	CCTCTGCGTTCTCGGTCC	59.818	66.667	0.00	0.00	37.56	4.46
1306	2771	0.517316	GAGTTAAACACCAGCGGCTG	59.483	55.000	22.84	22.84	0.00	4.85
1452	2920	1.004044	ACCTTGACATCAGCCTCTTGG	59.996	52.381	0.00	0.00	0.00	3.61
1972	3471	3.199071	TCGTACCCTTTACTTGCCATCAT	59.801	43.478	0.00	0.00	0.00	2.45
2058	3819	7.812690	TCTACGGTCAGCATACTAAATTCTA	57.187	36.000	0.00	0.00	0.00	2.10
2117	3891	6.467677	GCAGACTAATCCCAGATTGCTAATA	58.532	40.000	0.08	0.00	0.00	0.98
2118	3892	5.312079	GCAGACTAATCCCAGATTGCTAAT	58.688	41.667	0.08	0.00	0.00	1.73
2335	4117	1.679977	GGGCTGCAATGGAGCTTCA	60.680	57.895	25.07	0.00	36.63	3.02
2943	4740	1.774254	TCACTGCTTCCTTTCCTTCCA	59.226	47.619	0.00	0.00	0.00	3.53
3017	4814	1.299976	GATCCCACCAACCGCTCTT	59.700	57.895	0.00	0.00	0.00	2.85
3034	4841	2.073716	ACCAACGTGTCCCCTTGGA	61.074	57.895	7.17	0.00	38.29	3.53
3047	4854	3.568093	GTGGCATCAACACACCAAC	57.432	52.632	0.00	0.00	38.67	3.77

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.