Multiple sequence alignment - TraesCS3A01G319900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G319900 chr3A 100.000 8374 0 0 1 8374 562357668 562349295 0.000000e+00 15464.0
1 TraesCS3A01G319900 chr3A 85.714 98 14 0 8277 8374 108968534 108968631 4.130000e-18 104.0
2 TraesCS3A01G319900 chr3D 94.986 3450 97 32 3489 6926 426484036 426480651 0.000000e+00 5343.0
3 TraesCS3A01G319900 chr3D 97.270 2601 59 4 775 3375 426486819 426484231 0.000000e+00 4399.0
4 TraesCS3A01G319900 chr3D 96.253 774 25 3 3 773 85276529 85275757 0.000000e+00 1266.0
5 TraesCS3A01G319900 chr3D 95.833 648 14 4 6927 7564 426480599 426479955 0.000000e+00 1035.0
6 TraesCS3A01G319900 chr3D 95.319 470 11 4 7562 8023 426479797 426479331 0.000000e+00 736.0
7 TraesCS3A01G319900 chr3D 88.182 110 3 5 3363 3462 426484209 426484100 1.140000e-23 122.0
8 TraesCS3A01G319900 chr3B 96.686 2565 53 13 4381 6926 556056202 556058753 0.000000e+00 4237.0
9 TraesCS3A01G319900 chr3B 98.003 2253 44 1 1062 3314 556048716 556050967 0.000000e+00 3910.0
10 TraesCS3A01G319900 chr3B 96.114 1158 29 8 6927 8074 556058805 556059956 0.000000e+00 1875.0
11 TraesCS3A01G319900 chr3B 95.755 1060 22 6 3342 4381 556051948 556053004 0.000000e+00 1687.0
12 TraesCS3A01G319900 chr3B 90.402 771 73 1 3 772 662167042 662167812 0.000000e+00 1013.0
13 TraesCS3A01G319900 chr3B 90.065 775 75 2 1 773 662461508 662460734 0.000000e+00 1003.0
14 TraesCS3A01G319900 chr3B 100.000 324 0 0 946 1269 556048381 556048704 4.330000e-167 599.0
15 TraesCS3A01G319900 chr3B 95.200 125 6 0 775 899 556047752 556047876 1.840000e-46 198.0
16 TraesCS3A01G319900 chr3B 91.803 61 5 0 3302 3362 556051711 556051771 1.500000e-12 86.1
17 TraesCS3A01G319900 chr6D 95.731 773 29 2 2 773 205058037 205058806 0.000000e+00 1242.0
18 TraesCS3A01G319900 chr2A 95.238 777 33 3 1 773 670673033 670673809 0.000000e+00 1227.0
19 TraesCS3A01G319900 chr4D 95.000 780 36 3 3 781 10398131 10397354 0.000000e+00 1221.0
20 TraesCS3A01G319900 chr1A 93.912 772 40 2 3 773 324856054 324856819 0.000000e+00 1158.0
21 TraesCS3A01G319900 chr4B 90.310 774 72 3 1 772 68447834 68447062 0.000000e+00 1011.0
22 TraesCS3A01G319900 chr4B 88.345 429 45 2 4221 4648 63994875 63995299 2.080000e-140 510.0
23 TraesCS3A01G319900 chr4B 89.815 108 8 3 4737 4844 63995300 63995404 1.470000e-27 135.0
24 TraesCS3A01G319900 chr5B 89.062 768 81 3 8 773 102888045 102887279 0.000000e+00 950.0
25 TraesCS3A01G319900 chr4A 89.149 599 53 6 4218 4814 555749890 555749302 0.000000e+00 736.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G319900 chr3A 562349295 562357668 8373 True 15464.000000 15464 100.000 1 8374 1 chr3A.!!$R1 8373
1 TraesCS3A01G319900 chr3D 426479331 426486819 7488 True 2327.000000 5343 94.318 775 8023 5 chr3D.!!$R2 7248
2 TraesCS3A01G319900 chr3D 85275757 85276529 772 True 1266.000000 1266 96.253 3 773 1 chr3D.!!$R1 770
3 TraesCS3A01G319900 chr3B 556047752 556059956 12204 False 1798.871429 4237 96.223 775 8074 7 chr3B.!!$F2 7299
4 TraesCS3A01G319900 chr3B 662167042 662167812 770 False 1013.000000 1013 90.402 3 772 1 chr3B.!!$F1 769
5 TraesCS3A01G319900 chr3B 662460734 662461508 774 True 1003.000000 1003 90.065 1 773 1 chr3B.!!$R1 772
6 TraesCS3A01G319900 chr6D 205058037 205058806 769 False 1242.000000 1242 95.731 2 773 1 chr6D.!!$F1 771
7 TraesCS3A01G319900 chr2A 670673033 670673809 776 False 1227.000000 1227 95.238 1 773 1 chr2A.!!$F1 772
8 TraesCS3A01G319900 chr4D 10397354 10398131 777 True 1221.000000 1221 95.000 3 781 1 chr4D.!!$R1 778
9 TraesCS3A01G319900 chr1A 324856054 324856819 765 False 1158.000000 1158 93.912 3 773 1 chr1A.!!$F1 770
10 TraesCS3A01G319900 chr4B 68447062 68447834 772 True 1011.000000 1011 90.310 1 772 1 chr4B.!!$R1 771
11 TraesCS3A01G319900 chr4B 63994875 63995404 529 False 322.500000 510 89.080 4221 4844 2 chr4B.!!$F1 623
12 TraesCS3A01G319900 chr5B 102887279 102888045 766 True 950.000000 950 89.062 8 773 1 chr5B.!!$R1 765
13 TraesCS3A01G319900 chr4A 555749302 555749890 588 True 736.000000 736 89.149 4218 4814 1 chr4A.!!$R1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 248 0.604578 ACACGCATGTAACTACGGGT 59.395 50.000 0.00 0.00 37.26 5.28 F
1710 2398 0.039180 TCTCCCAAGCTCTGACCGTA 59.961 55.000 0.00 0.00 0.00 4.02 F
1815 2503 0.321564 TATTTGTGCCTGCGCTCACT 60.322 50.000 21.69 9.95 38.18 3.41 F
2350 3038 1.140852 AGGCTATTGGTGCGAATGCTA 59.859 47.619 0.00 0.00 43.34 3.49 F
3144 3832 1.064758 TGGATAACATGGGTGTCTGCC 60.065 52.381 0.00 0.00 37.67 4.85 F
4756 9688 2.288152 CCTGCAATAACAACGCTTTGGT 60.288 45.455 7.92 2.95 37.00 3.67 F
5549 10489 3.070734 CAGGCAGATTCAGCTACCATAGT 59.929 47.826 0.86 0.00 0.00 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2116 2804 0.402121 AAACTCCCTTCCAGTCCTGC 59.598 55.000 0.00 0.00 0.00 4.85 R
2511 3199 2.202703 CGACTAACTTCCGGCCCG 60.203 66.667 0.00 0.00 0.00 6.13 R
3119 3807 4.522405 CAGACACCCATGTTATCCACAAAA 59.478 41.667 0.00 0.00 39.95 2.44 R
4202 5925 1.020437 GTCATGCTTAGCTTCTGGGC 58.980 55.000 5.60 0.00 0.00 5.36 R
5126 10066 1.865340 GTTTCGACTTGGTCACCAGTC 59.135 52.381 13.61 13.61 33.81 3.51 R
6157 11110 1.003223 GGTTTGTACTCGTTGGTGCAC 60.003 52.381 8.80 8.80 32.04 4.57 R
7465 12480 0.463204 ACAGATCTCACCCATCAGCG 59.537 55.000 0.00 0.00 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 2.685380 AGTTCCAGAGCCCCCTCG 60.685 66.667 0.00 0.00 43.05 4.63
200 203 3.562973 CGAAGGACTTGCATGCAATATCT 59.437 43.478 31.96 23.75 35.20 1.98
228 231 1.683025 CATGCAATGCCCAGGGACA 60.683 57.895 10.89 7.45 37.62 4.02
245 248 0.604578 ACACGCATGTAACTACGGGT 59.395 50.000 0.00 0.00 37.26 5.28
400 404 0.836606 TTGGGGCTTCAGCGATCATA 59.163 50.000 0.00 0.00 43.26 2.15
413 417 1.883275 CGATCATAGTCGAAGGCCTCT 59.117 52.381 5.23 0.06 44.06 3.69
418 422 4.600207 GTCGAAGGCCTCTTGGAC 57.400 61.111 5.23 4.52 46.16 4.02
542 548 3.866651 ACAAGGATCAAGGATGACTTCG 58.133 45.455 0.00 0.00 38.69 3.79
565 571 5.237048 GCATGCAAGTTTTTCCCAATTCTA 58.763 37.500 14.21 0.00 0.00 2.10
578 584 9.753674 TTTTCCCAATTCTACAAGATATCAAGT 57.246 29.630 5.32 5.45 0.00 3.16
600 606 2.614259 TCAGAGAAGAGCTTTCAGGGT 58.386 47.619 10.08 0.00 0.00 4.34
619 625 7.130099 TCAGGGTAGTAGAGTTTATCCATGAA 58.870 38.462 0.00 0.00 32.73 2.57
832 843 1.466856 TACCTCGCTTACATGACGGT 58.533 50.000 0.00 0.00 0.00 4.83
868 879 4.365111 GGCATGGGTCCACCTGCA 62.365 66.667 15.01 0.00 41.96 4.41
933 944 1.141858 GGTAAGCAATCTCCCTCCCAG 59.858 57.143 0.00 0.00 0.00 4.45
936 947 2.922234 CAATCTCCCTCCCAGCCC 59.078 66.667 0.00 0.00 0.00 5.19
1710 2398 0.039180 TCTCCCAAGCTCTGACCGTA 59.961 55.000 0.00 0.00 0.00 4.02
1719 2407 2.017623 GCTCTGACCGTACTAGCCTCA 61.018 57.143 0.00 0.00 0.00 3.86
1746 2434 1.668101 CCTCCTACACCTCCGTGCTC 61.668 65.000 0.00 0.00 44.40 4.26
1779 2467 1.386533 GGATCGTTCGGGTCACTCTA 58.613 55.000 0.00 0.00 0.00 2.43
1815 2503 0.321564 TATTTGTGCCTGCGCTCACT 60.322 50.000 21.69 9.95 38.18 3.41
1872 2560 2.203538 CCCCCTGCACAGCTGTTT 60.204 61.111 18.94 0.00 0.00 2.83
1890 2578 2.043953 GGTGGCATTCCAGACCCC 60.044 66.667 0.00 0.00 44.48 4.95
1893 2581 2.000701 TGGCATTCCAGACCCCGAT 61.001 57.895 0.00 0.00 37.47 4.18
1997 2685 3.054361 ACCTGTACAGATTGGCTTAAGGG 60.054 47.826 24.68 5.93 0.00 3.95
2116 2804 5.553290 TCGTGAGAAACTAGATGACAGAG 57.447 43.478 0.00 0.00 37.03 3.35
2206 2894 3.568430 GGATCAAATCCGTGGGTTAATCC 59.432 47.826 0.00 0.00 40.13 3.01
2217 2905 4.017126 GTGGGTTAATCCTGAAAGAAGGG 58.983 47.826 6.28 0.00 37.96 3.95
2350 3038 1.140852 AGGCTATTGGTGCGAATGCTA 59.859 47.619 0.00 0.00 43.34 3.49
2481 3169 3.003275 TGAAACCAATTGCTGACGAGAAC 59.997 43.478 0.00 0.00 0.00 3.01
2511 3199 1.503294 GCTGCCTAGCCTCGTATTTC 58.497 55.000 0.00 0.00 44.33 2.17
3119 3807 1.339055 ACTGTGCATTACGGCTCACAT 60.339 47.619 0.00 0.00 39.39 3.21
3144 3832 1.064758 TGGATAACATGGGTGTCTGCC 60.065 52.381 0.00 0.00 37.67 4.85
3234 3922 3.051210 CACCCTCAGTGTCGCTCA 58.949 61.111 0.00 0.00 41.93 4.26
3305 3993 5.526846 ACACTGCCGTATCTACTAACTAGTC 59.473 44.000 0.00 0.00 37.73 2.59
4044 5767 8.677300 TGTTCTGATACTTCATTATTTCAAGCC 58.323 33.333 0.00 0.00 0.00 4.35
4057 5780 5.813513 ATTTCAAGCCAAGAACCAAAGAT 57.186 34.783 0.00 0.00 0.00 2.40
4157 5880 7.349711 ACAGTTACTTATTGTGTTTGTTAGCG 58.650 34.615 0.00 0.00 0.00 4.26
4169 5892 5.683743 GTGTTTGTTAGCGCTTATTGTTGAA 59.316 36.000 18.68 0.00 0.00 2.69
4202 5925 3.181443 ACCTTCCCTAGTTGTGTTCTTGG 60.181 47.826 0.00 0.00 0.00 3.61
4306 6032 9.125906 GCTGAATAATAGCATGCTTCTTTATTG 57.874 33.333 28.83 21.62 40.81 1.90
4308 6034 7.804600 TGAATAATAGCATGCTTCTTTATTGCG 59.195 33.333 28.83 0.00 38.32 4.85
4322 6048 9.297586 CTTCTTTATTGCGTGACAGTATTACTA 57.702 33.333 0.00 0.00 0.00 1.82
4430 9354 6.005583 TCAGATTTCAATCAACTTGAGCAC 57.994 37.500 2.43 0.00 44.48 4.40
4505 9436 6.636454 TCTTACTTGAGATATTGGGGTGTT 57.364 37.500 0.00 0.00 0.00 3.32
4631 9563 6.717084 ACAAGAGGGAAATAGTTTTGAGGAAG 59.283 38.462 0.00 0.00 0.00 3.46
4748 9680 2.805671 GCAAAACCCCTGCAATAACAAC 59.194 45.455 0.00 0.00 39.69 3.32
4756 9688 2.288152 CCTGCAATAACAACGCTTTGGT 60.288 45.455 7.92 2.95 37.00 3.67
4968 9908 3.349927 TGATTCCCTTGTGATCAAGCTG 58.650 45.455 0.00 0.00 46.74 4.24
5025 9965 3.801698 CTTGTGTATCTGGATGACCCTG 58.198 50.000 0.00 0.00 35.38 4.45
5126 10066 7.010183 ACTCACGTCAATATTTCAACGATAAGG 59.990 37.037 17.14 8.11 38.44 2.69
5184 10124 9.253832 TCCAAATATTTGTGTCAATTATCACCT 57.746 29.630 23.24 0.00 36.45 4.00
5220 10160 6.265577 AGCTGTGTTGTTGAAGTTTGAATAC 58.734 36.000 0.00 0.00 0.00 1.89
5229 10169 7.531716 TGTTGAAGTTTGAATACGAAAAGTGT 58.468 30.769 0.00 0.00 0.00 3.55
5230 10170 7.483375 TGTTGAAGTTTGAATACGAAAAGTGTG 59.517 33.333 0.00 0.00 0.00 3.82
5549 10489 3.070734 CAGGCAGATTCAGCTACCATAGT 59.929 47.826 0.86 0.00 0.00 2.12
5550 10490 3.713764 AGGCAGATTCAGCTACCATAGTT 59.286 43.478 0.86 0.00 0.00 2.24
5601 10541 4.529769 TCGCAGAGATTGGATCCAATAGAT 59.470 41.667 34.72 24.51 45.50 1.98
6138 11091 3.615155 TGAGTTGTTGTGAATGGTGTCA 58.385 40.909 0.00 0.00 0.00 3.58
6157 11110 3.085533 TCACATGGGGTTTTCCGTATTG 58.914 45.455 0.00 0.00 41.82 1.90
6188 11141 2.218603 AGTACAAACCGCTCTTTGGTG 58.781 47.619 0.00 0.00 40.35 4.17
6276 11229 3.146066 ACGTACCAATGTTGCAGTCATT 58.854 40.909 11.63 11.63 36.16 2.57
6286 11239 7.361971 CCAATGTTGCAGTCATTAGTCATAACA 60.362 37.037 15.39 0.00 34.34 2.41
6528 11482 2.520968 GGCCTCTGGTGGGTGTTT 59.479 61.111 0.00 0.00 0.00 2.83
6631 11585 2.188994 GCAGTGCCCCAGCTCTAG 59.811 66.667 2.85 0.00 40.79 2.43
7087 12100 2.082231 CAGAACTGGAAGGATGCTGTG 58.918 52.381 0.00 0.00 39.30 3.66
7107 12120 6.425721 GCTGTGTTCAGTTTGTATACTGGTTA 59.574 38.462 4.17 0.00 44.47 2.85
7165 12180 5.921408 GGCTGTCGACTAGGTTTTAGATATG 59.079 44.000 17.92 0.00 0.00 1.78
7532 12547 2.472695 TGACACATAGTTGGCCTGTC 57.527 50.000 3.32 8.27 33.30 3.51
7663 12838 0.540830 AGGAGGCGCTGATACTAGGG 60.541 60.000 7.64 0.00 0.00 3.53
7740 12915 1.876156 AGAGCAAGTGCAGCTTTGTAC 59.124 47.619 6.00 0.00 43.58 2.90
7874 13049 2.375146 GCGGTTTGGGAGGATGTTATT 58.625 47.619 0.00 0.00 0.00 1.40
7875 13050 3.547746 GCGGTTTGGGAGGATGTTATTA 58.452 45.455 0.00 0.00 0.00 0.98
7876 13051 4.142038 GCGGTTTGGGAGGATGTTATTAT 58.858 43.478 0.00 0.00 0.00 1.28
8015 13200 7.308109 CGCCAGTTTTATTTCACTGTACCTTTA 60.308 37.037 0.00 0.00 39.09 1.85
8065 13258 2.354821 GACCCTCGAACCATTTGCATAC 59.645 50.000 0.00 0.00 0.00 2.39
8068 13261 2.223021 CCTCGAACCATTTGCATACGTG 60.223 50.000 0.00 0.00 0.00 4.49
8077 13270 2.812178 GCATACGTGCGGACCGTT 60.812 61.111 16.73 0.14 42.28 4.44
8078 13271 2.795389 GCATACGTGCGGACCGTTC 61.795 63.158 16.73 8.00 42.28 3.95
8079 13272 1.153901 CATACGTGCGGACCGTTCT 60.154 57.895 16.73 0.00 39.60 3.01
8080 13273 1.138047 CATACGTGCGGACCGTTCTC 61.138 60.000 16.73 0.00 39.60 2.87
8081 13274 2.275547 ATACGTGCGGACCGTTCTCC 62.276 60.000 16.73 0.00 39.60 3.71
8083 13276 3.998672 GTGCGGACCGTTCTCCCA 61.999 66.667 16.73 0.04 0.00 4.37
8084 13277 3.000819 TGCGGACCGTTCTCCCAT 61.001 61.111 16.73 0.00 0.00 4.00
8085 13278 2.202892 GCGGACCGTTCTCCCATC 60.203 66.667 16.73 0.00 0.00 3.51
8086 13279 2.104331 CGGACCGTTCTCCCATCG 59.896 66.667 5.48 0.00 0.00 3.84
8087 13280 2.707849 CGGACCGTTCTCCCATCGT 61.708 63.158 5.48 0.00 0.00 3.73
8088 13281 1.141234 GGACCGTTCTCCCATCGTC 59.859 63.158 0.00 0.00 0.00 4.20
8089 13282 1.141234 GACCGTTCTCCCATCGTCC 59.859 63.158 0.00 0.00 0.00 4.79
8090 13283 2.104331 CCGTTCTCCCATCGTCCG 59.896 66.667 0.00 0.00 0.00 4.79
8091 13284 2.582498 CGTTCTCCCATCGTCCGC 60.582 66.667 0.00 0.00 0.00 5.54
8092 13285 2.893398 GTTCTCCCATCGTCCGCT 59.107 61.111 0.00 0.00 0.00 5.52
8093 13286 1.519455 GTTCTCCCATCGTCCGCTG 60.519 63.158 0.00 0.00 0.00 5.18
8094 13287 3.371097 TTCTCCCATCGTCCGCTGC 62.371 63.158 0.00 0.00 0.00 5.25
8095 13288 4.147449 CTCCCATCGTCCGCTGCA 62.147 66.667 0.00 0.00 0.00 4.41
8096 13289 4.147449 TCCCATCGTCCGCTGCAG 62.147 66.667 10.11 10.11 0.00 4.41
8097 13290 4.147449 CCCATCGTCCGCTGCAGA 62.147 66.667 20.43 0.00 0.00 4.26
8098 13291 2.584418 CCATCGTCCGCTGCAGAG 60.584 66.667 20.43 15.45 0.00 3.35
8099 13292 2.182791 CATCGTCCGCTGCAGAGT 59.817 61.111 20.43 0.00 0.00 3.24
8100 13293 2.163390 CATCGTCCGCTGCAGAGTG 61.163 63.158 20.43 8.77 0.00 3.51
8105 13298 2.740055 CCGCTGCAGAGTGGTCAC 60.740 66.667 20.43 0.00 43.95 3.67
8106 13299 2.341543 CGCTGCAGAGTGGTCACT 59.658 61.111 20.43 2.94 45.84 3.41
8107 13300 1.301244 CGCTGCAGAGTGGTCACTT 60.301 57.895 20.43 0.00 42.66 3.16
8108 13301 0.882042 CGCTGCAGAGTGGTCACTTT 60.882 55.000 20.43 0.00 42.66 2.66
8109 13302 1.312815 GCTGCAGAGTGGTCACTTTT 58.687 50.000 20.43 0.00 42.66 2.27
8110 13303 1.678101 GCTGCAGAGTGGTCACTTTTT 59.322 47.619 20.43 0.00 42.66 1.94
8131 13324 6.414408 TTTTTCTCGCAAATTGAAAGCAAA 57.586 29.167 0.00 0.00 37.59 3.68
8132 13325 5.640218 TTTCTCGCAAATTGAAAGCAAAG 57.360 34.783 0.00 0.00 37.59 2.77
8133 13326 3.052036 TCTCGCAAATTGAAAGCAAAGC 58.948 40.909 0.00 0.00 37.59 3.51
8134 13327 3.054878 CTCGCAAATTGAAAGCAAAGCT 58.945 40.909 0.00 0.00 42.56 3.74
8135 13328 2.796031 TCGCAAATTGAAAGCAAAGCTG 59.204 40.909 0.00 0.00 39.62 4.24
8136 13329 2.096614 CGCAAATTGAAAGCAAAGCTGG 60.097 45.455 0.00 0.00 39.62 4.85
8137 13330 2.224784 GCAAATTGAAAGCAAAGCTGGG 59.775 45.455 0.00 0.00 39.62 4.45
8138 13331 2.809696 CAAATTGAAAGCAAAGCTGGGG 59.190 45.455 0.00 0.00 39.62 4.96
8139 13332 0.978907 ATTGAAAGCAAAGCTGGGGG 59.021 50.000 0.00 0.00 39.62 5.40
8155 13348 3.365265 GGGGGTGCTTTGTGCGAG 61.365 66.667 0.00 0.00 46.63 5.03
8156 13349 2.594592 GGGGTGCTTTGTGCGAGT 60.595 61.111 0.00 0.00 46.63 4.18
8157 13350 2.193536 GGGGTGCTTTGTGCGAGTT 61.194 57.895 0.00 0.00 46.63 3.01
8158 13351 1.733526 GGGTGCTTTGTGCGAGTTT 59.266 52.632 0.00 0.00 46.63 2.66
8159 13352 0.594796 GGGTGCTTTGTGCGAGTTTG 60.595 55.000 0.00 0.00 46.63 2.93
8160 13353 0.380378 GGTGCTTTGTGCGAGTTTGA 59.620 50.000 0.00 0.00 46.63 2.69
8161 13354 1.202245 GGTGCTTTGTGCGAGTTTGAA 60.202 47.619 0.00 0.00 46.63 2.69
8162 13355 1.846175 GTGCTTTGTGCGAGTTTGAAC 59.154 47.619 0.00 0.00 46.63 3.18
8163 13356 1.470494 TGCTTTGTGCGAGTTTGAACA 59.530 42.857 0.00 0.00 46.63 3.18
8164 13357 2.111756 GCTTTGTGCGAGTTTGAACAG 58.888 47.619 0.00 0.00 0.00 3.16
8165 13358 2.111756 CTTTGTGCGAGTTTGAACAGC 58.888 47.619 7.19 7.19 36.06 4.40
8166 13359 1.090728 TTGTGCGAGTTTGAACAGCA 58.909 45.000 11.21 11.21 40.60 4.41
8167 13360 0.657312 TGTGCGAGTTTGAACAGCAG 59.343 50.000 14.27 0.00 42.39 4.24
8168 13361 0.658536 GTGCGAGTTTGAACAGCAGC 60.659 55.000 14.27 6.61 42.39 5.25
8169 13362 1.081840 GCGAGTTTGAACAGCAGCC 60.082 57.895 8.69 0.00 35.74 4.85
8170 13363 1.785041 GCGAGTTTGAACAGCAGCCA 61.785 55.000 8.69 0.00 35.74 4.75
8171 13364 0.877071 CGAGTTTGAACAGCAGCCAT 59.123 50.000 0.00 0.00 0.00 4.40
8172 13365 1.400629 CGAGTTTGAACAGCAGCCATG 60.401 52.381 0.00 0.00 0.00 3.66
8173 13366 1.610522 GAGTTTGAACAGCAGCCATGT 59.389 47.619 0.00 0.00 0.00 3.21
8174 13367 2.813754 GAGTTTGAACAGCAGCCATGTA 59.186 45.455 0.00 0.00 0.00 2.29
8175 13368 2.816087 AGTTTGAACAGCAGCCATGTAG 59.184 45.455 0.00 0.00 0.00 2.74
8176 13369 1.825090 TTGAACAGCAGCCATGTAGG 58.175 50.000 0.00 0.00 41.84 3.18
8177 13370 0.983467 TGAACAGCAGCCATGTAGGA 59.017 50.000 0.00 0.00 41.22 2.94
8178 13371 1.065926 TGAACAGCAGCCATGTAGGAG 60.066 52.381 0.00 0.00 41.22 3.69
8179 13372 0.254178 AACAGCAGCCATGTAGGAGG 59.746 55.000 0.00 0.00 41.22 4.30
8180 13373 1.147824 CAGCAGCCATGTAGGAGGG 59.852 63.158 0.00 0.00 41.22 4.30
8181 13374 1.307343 AGCAGCCATGTAGGAGGGT 60.307 57.895 0.00 0.00 41.22 4.34
8183 13376 2.300996 CAGCCATGTAGGAGGGTGT 58.699 57.895 0.00 0.00 45.75 4.16
8184 13377 0.107508 CAGCCATGTAGGAGGGTGTG 60.108 60.000 0.00 0.00 45.75 3.82
8185 13378 1.452108 GCCATGTAGGAGGGTGTGC 60.452 63.158 0.00 0.00 41.22 4.57
8186 13379 1.990424 CCATGTAGGAGGGTGTGCA 59.010 57.895 0.00 0.00 41.22 4.57
8187 13380 0.107508 CCATGTAGGAGGGTGTGCAG 60.108 60.000 0.00 0.00 41.22 4.41
8188 13381 0.745845 CATGTAGGAGGGTGTGCAGC 60.746 60.000 0.00 0.00 0.00 5.25
8196 13389 3.909662 GGTGTGCAGCCATGTAGG 58.090 61.111 2.57 0.00 41.84 3.18
8197 13390 1.299648 GGTGTGCAGCCATGTAGGA 59.700 57.895 2.57 0.00 41.22 2.94
8198 13391 0.745845 GGTGTGCAGCCATGTAGGAG 60.746 60.000 2.57 0.00 41.22 3.69
8199 13392 0.036010 GTGTGCAGCCATGTAGGAGT 60.036 55.000 0.00 0.00 41.22 3.85
8200 13393 0.250234 TGTGCAGCCATGTAGGAGTC 59.750 55.000 0.00 0.00 41.22 3.36
8201 13394 0.462759 GTGCAGCCATGTAGGAGTCC 60.463 60.000 0.00 0.00 41.22 3.85
8202 13395 0.618680 TGCAGCCATGTAGGAGTCCT 60.619 55.000 17.78 17.78 41.22 3.85
8203 13396 1.342975 TGCAGCCATGTAGGAGTCCTA 60.343 52.381 15.33 15.33 41.22 2.94
8212 13405 2.822707 TAGGAGTCCTACACCCTGAC 57.177 55.000 15.33 0.00 34.61 3.51
8213 13406 0.041386 AGGAGTCCTACACCCTGACC 59.959 60.000 10.94 0.00 28.26 4.02
8214 13407 0.976590 GGAGTCCTACACCCTGACCC 60.977 65.000 0.41 0.00 0.00 4.46
8215 13408 0.252103 GAGTCCTACACCCTGACCCA 60.252 60.000 0.00 0.00 0.00 4.51
8216 13409 0.544595 AGTCCTACACCCTGACCCAC 60.545 60.000 0.00 0.00 0.00 4.61
8217 13410 0.544595 GTCCTACACCCTGACCCACT 60.545 60.000 0.00 0.00 0.00 4.00
8218 13411 1.086565 TCCTACACCCTGACCCACTA 58.913 55.000 0.00 0.00 0.00 2.74
8219 13412 1.433985 TCCTACACCCTGACCCACTAA 59.566 52.381 0.00 0.00 0.00 2.24
8220 13413 2.158127 TCCTACACCCTGACCCACTAAA 60.158 50.000 0.00 0.00 0.00 1.85
8221 13414 2.844348 CCTACACCCTGACCCACTAAAT 59.156 50.000 0.00 0.00 0.00 1.40
8222 13415 3.118371 CCTACACCCTGACCCACTAAATC 60.118 52.174 0.00 0.00 0.00 2.17
8223 13416 1.633945 ACACCCTGACCCACTAAATCC 59.366 52.381 0.00 0.00 0.00 3.01
8224 13417 1.064685 CACCCTGACCCACTAAATCCC 60.065 57.143 0.00 0.00 0.00 3.85
8225 13418 1.203570 ACCCTGACCCACTAAATCCCT 60.204 52.381 0.00 0.00 0.00 4.20
8226 13419 1.923148 CCCTGACCCACTAAATCCCTT 59.077 52.381 0.00 0.00 0.00 3.95
8227 13420 2.092375 CCCTGACCCACTAAATCCCTTC 60.092 54.545 0.00 0.00 0.00 3.46
8228 13421 2.846827 CCTGACCCACTAAATCCCTTCT 59.153 50.000 0.00 0.00 0.00 2.85
8229 13422 3.118223 CCTGACCCACTAAATCCCTTCTC 60.118 52.174 0.00 0.00 0.00 2.87
8230 13423 2.844348 TGACCCACTAAATCCCTTCTCC 59.156 50.000 0.00 0.00 0.00 3.71
8231 13424 1.838077 ACCCACTAAATCCCTTCTCCG 59.162 52.381 0.00 0.00 0.00 4.63
8232 13425 1.141053 CCCACTAAATCCCTTCTCCGG 59.859 57.143 0.00 0.00 0.00 5.14
8233 13426 1.141053 CCACTAAATCCCTTCTCCGGG 59.859 57.143 0.00 0.00 46.13 5.73
8234 13427 0.837940 ACTAAATCCCTTCTCCGGGC 59.162 55.000 0.00 0.00 44.30 6.13
8235 13428 0.108774 CTAAATCCCTTCTCCGGGCC 59.891 60.000 0.00 0.00 44.30 5.80
8236 13429 0.327191 TAAATCCCTTCTCCGGGCCT 60.327 55.000 0.84 0.00 44.30 5.19
8237 13430 0.327191 AAATCCCTTCTCCGGGCCTA 60.327 55.000 0.84 0.00 44.30 3.93
8238 13431 0.104409 AATCCCTTCTCCGGGCCTAT 60.104 55.000 0.84 0.00 44.30 2.57
8239 13432 0.104409 ATCCCTTCTCCGGGCCTATT 60.104 55.000 0.84 0.00 44.30 1.73
8240 13433 0.327191 TCCCTTCTCCGGGCCTATTT 60.327 55.000 0.84 0.00 44.30 1.40
8241 13434 0.551396 CCCTTCTCCGGGCCTATTTT 59.449 55.000 0.84 0.00 37.41 1.82
8242 13435 1.477014 CCCTTCTCCGGGCCTATTTTC 60.477 57.143 0.84 0.00 37.41 2.29
8243 13436 1.490910 CCTTCTCCGGGCCTATTTTCT 59.509 52.381 0.84 0.00 0.00 2.52
8244 13437 2.092375 CCTTCTCCGGGCCTATTTTCTT 60.092 50.000 0.84 0.00 0.00 2.52
8245 13438 3.206964 CTTCTCCGGGCCTATTTTCTTC 58.793 50.000 0.84 0.00 0.00 2.87
8246 13439 2.478292 TCTCCGGGCCTATTTTCTTCT 58.522 47.619 0.84 0.00 0.00 2.85
8247 13440 2.170607 TCTCCGGGCCTATTTTCTTCTG 59.829 50.000 0.84 0.00 0.00 3.02
8248 13441 2.170607 CTCCGGGCCTATTTTCTTCTGA 59.829 50.000 0.84 0.00 0.00 3.27
8249 13442 2.777692 TCCGGGCCTATTTTCTTCTGAT 59.222 45.455 0.84 0.00 0.00 2.90
8250 13443 3.142174 CCGGGCCTATTTTCTTCTGATC 58.858 50.000 0.84 0.00 0.00 2.92
8251 13444 3.181450 CCGGGCCTATTTTCTTCTGATCT 60.181 47.826 0.84 0.00 0.00 2.75
8252 13445 3.812053 CGGGCCTATTTTCTTCTGATCTG 59.188 47.826 0.84 0.00 0.00 2.90
8253 13446 3.567585 GGGCCTATTTTCTTCTGATCTGC 59.432 47.826 0.84 0.00 0.00 4.26
8254 13447 3.567585 GGCCTATTTTCTTCTGATCTGCC 59.432 47.826 0.00 0.00 0.00 4.85
8255 13448 3.567585 GCCTATTTTCTTCTGATCTGCCC 59.432 47.826 0.00 0.00 0.00 5.36
8256 13449 4.140536 CCTATTTTCTTCTGATCTGCCCC 58.859 47.826 0.00 0.00 0.00 5.80
8257 13450 4.141298 CCTATTTTCTTCTGATCTGCCCCT 60.141 45.833 0.00 0.00 0.00 4.79
8258 13451 3.814504 TTTTCTTCTGATCTGCCCCTT 57.185 42.857 0.00 0.00 0.00 3.95
8259 13452 3.356529 TTTCTTCTGATCTGCCCCTTC 57.643 47.619 0.00 0.00 0.00 3.46
8260 13453 2.260639 TCTTCTGATCTGCCCCTTCT 57.739 50.000 0.00 0.00 0.00 2.85
8261 13454 2.114616 TCTTCTGATCTGCCCCTTCTC 58.885 52.381 0.00 0.00 0.00 2.87
8262 13455 1.140652 CTTCTGATCTGCCCCTTCTCC 59.859 57.143 0.00 0.00 0.00 3.71
8263 13456 0.692419 TCTGATCTGCCCCTTCTCCC 60.692 60.000 0.00 0.00 0.00 4.30
8264 13457 0.693767 CTGATCTGCCCCTTCTCCCT 60.694 60.000 0.00 0.00 0.00 4.20
8265 13458 0.692419 TGATCTGCCCCTTCTCCCTC 60.692 60.000 0.00 0.00 0.00 4.30
8266 13459 1.385206 ATCTGCCCCTTCTCCCTCC 60.385 63.158 0.00 0.00 0.00 4.30
8267 13460 1.907470 ATCTGCCCCTTCTCCCTCCT 61.907 60.000 0.00 0.00 0.00 3.69
8268 13461 2.041265 TGCCCCTTCTCCCTCCTC 59.959 66.667 0.00 0.00 0.00 3.71
8269 13462 2.370633 GCCCCTTCTCCCTCCTCT 59.629 66.667 0.00 0.00 0.00 3.69
8270 13463 2.069430 GCCCCTTCTCCCTCCTCTG 61.069 68.421 0.00 0.00 0.00 3.35
8271 13464 1.706575 CCCCTTCTCCCTCCTCTGA 59.293 63.158 0.00 0.00 0.00 3.27
8272 13465 0.689412 CCCCTTCTCCCTCCTCTGAC 60.689 65.000 0.00 0.00 0.00 3.51
8273 13466 1.040339 CCCTTCTCCCTCCTCTGACG 61.040 65.000 0.00 0.00 0.00 4.35
8274 13467 0.033991 CCTTCTCCCTCCTCTGACGA 60.034 60.000 0.00 0.00 0.00 4.20
8275 13468 1.410932 CCTTCTCCCTCCTCTGACGAT 60.411 57.143 0.00 0.00 0.00 3.73
8276 13469 1.680735 CTTCTCCCTCCTCTGACGATG 59.319 57.143 0.00 0.00 0.00 3.84
8277 13470 0.753479 TCTCCCTCCTCTGACGATGC 60.753 60.000 0.00 0.00 0.00 3.91
8278 13471 1.743321 CTCCCTCCTCTGACGATGCC 61.743 65.000 0.00 0.00 0.00 4.40
8279 13472 2.060383 CCCTCCTCTGACGATGCCA 61.060 63.158 0.00 0.00 0.00 4.92
8280 13473 1.142748 CCTCCTCTGACGATGCCAC 59.857 63.158 0.00 0.00 0.00 5.01
8281 13474 1.142748 CTCCTCTGACGATGCCACC 59.857 63.158 0.00 0.00 0.00 4.61
8282 13475 2.202797 CCTCTGACGATGCCACCG 60.203 66.667 0.00 0.00 0.00 4.94
8283 13476 2.573869 CTCTGACGATGCCACCGT 59.426 61.111 0.00 0.00 43.56 4.83
8284 13477 1.079819 CTCTGACGATGCCACCGTT 60.080 57.895 0.00 0.00 40.67 4.44
8285 13478 1.354337 CTCTGACGATGCCACCGTTG 61.354 60.000 0.00 0.00 40.67 4.10
8286 13479 1.667830 CTGACGATGCCACCGTTGT 60.668 57.895 0.00 0.00 40.67 3.32
8287 13480 0.389296 CTGACGATGCCACCGTTGTA 60.389 55.000 0.00 0.00 40.67 2.41
8288 13481 0.668096 TGACGATGCCACCGTTGTAC 60.668 55.000 0.00 0.00 40.67 2.90
8289 13482 1.680105 GACGATGCCACCGTTGTACG 61.680 60.000 0.00 0.00 40.67 3.67
8290 13483 1.735198 CGATGCCACCGTTGTACGT 60.735 57.895 0.00 0.00 40.58 3.57
8291 13484 1.680105 CGATGCCACCGTTGTACGTC 61.680 60.000 0.00 0.00 40.58 4.34
8292 13485 0.389426 GATGCCACCGTTGTACGTCT 60.389 55.000 0.00 0.00 40.58 4.18
8293 13486 0.389426 ATGCCACCGTTGTACGTCTC 60.389 55.000 0.00 0.00 40.58 3.36
8294 13487 1.288127 GCCACCGTTGTACGTCTCT 59.712 57.895 0.00 0.00 40.58 3.10
8295 13488 0.523072 GCCACCGTTGTACGTCTCTA 59.477 55.000 0.00 0.00 40.58 2.43
8296 13489 1.467035 GCCACCGTTGTACGTCTCTAG 60.467 57.143 0.00 0.00 40.58 2.43
8297 13490 1.467035 CCACCGTTGTACGTCTCTAGC 60.467 57.143 0.00 0.00 40.58 3.42
8298 13491 0.807496 ACCGTTGTACGTCTCTAGCC 59.193 55.000 0.00 0.00 40.58 3.93
8299 13492 0.247974 CCGTTGTACGTCTCTAGCCG 60.248 60.000 0.00 0.00 40.58 5.52
8300 13493 0.860618 CGTTGTACGTCTCTAGCCGC 60.861 60.000 0.00 0.00 36.74 6.53
8301 13494 0.525029 GTTGTACGTCTCTAGCCGCC 60.525 60.000 0.00 0.00 0.00 6.13
8302 13495 0.961857 TTGTACGTCTCTAGCCGCCA 60.962 55.000 0.00 0.00 0.00 5.69
8303 13496 1.063811 GTACGTCTCTAGCCGCCAC 59.936 63.158 0.00 0.00 0.00 5.01
8304 13497 1.377594 TACGTCTCTAGCCGCCACA 60.378 57.895 0.00 0.00 0.00 4.17
8305 13498 1.651240 TACGTCTCTAGCCGCCACAC 61.651 60.000 0.00 0.00 0.00 3.82
8306 13499 2.970639 GTCTCTAGCCGCCACACA 59.029 61.111 0.00 0.00 0.00 3.72
8307 13500 1.292223 GTCTCTAGCCGCCACACAA 59.708 57.895 0.00 0.00 0.00 3.33
8308 13501 0.737715 GTCTCTAGCCGCCACACAAG 60.738 60.000 0.00 0.00 0.00 3.16
8309 13502 2.047274 TCTAGCCGCCACACAAGC 60.047 61.111 0.00 0.00 0.00 4.01
8310 13503 2.358615 CTAGCCGCCACACAAGCA 60.359 61.111 0.00 0.00 0.00 3.91
8311 13504 1.746615 CTAGCCGCCACACAAGCAT 60.747 57.895 0.00 0.00 0.00 3.79
8312 13505 1.303236 TAGCCGCCACACAAGCATT 60.303 52.632 0.00 0.00 0.00 3.56
8322 13515 3.830192 CAAGCATTGCCGGGCCTC 61.830 66.667 17.97 2.64 40.39 4.70
8335 13528 3.512516 GCCTCCGCAACTGGCATC 61.513 66.667 0.00 0.00 45.46 3.91
8336 13529 3.197790 CCTCCGCAACTGGCATCG 61.198 66.667 0.00 0.00 45.17 3.84
8337 13530 2.125552 CTCCGCAACTGGCATCGA 60.126 61.111 0.00 0.00 45.17 3.59
8338 13531 2.434185 TCCGCAACTGGCATCGAC 60.434 61.111 0.00 0.00 45.17 4.20
8339 13532 2.741985 CCGCAACTGGCATCGACA 60.742 61.111 0.00 0.00 45.17 4.35
8340 13533 2.476051 CGCAACTGGCATCGACAC 59.524 61.111 0.00 0.00 45.17 3.67
8341 13534 2.476051 GCAACTGGCATCGACACG 59.524 61.111 0.00 0.00 43.97 4.49
8342 13535 2.476051 CAACTGGCATCGACACGC 59.524 61.111 0.00 0.00 0.00 5.34
8349 13542 3.853330 CATCGACACGCCCGCTTG 61.853 66.667 0.00 0.00 0.00 4.01
8355 13548 3.977244 CACGCCCGCTTGCCTTTT 61.977 61.111 0.00 0.00 0.00 2.27
8356 13549 2.281900 ACGCCCGCTTGCCTTTTA 60.282 55.556 0.00 0.00 0.00 1.52
8357 13550 1.677633 ACGCCCGCTTGCCTTTTAT 60.678 52.632 0.00 0.00 0.00 1.40
8358 13551 1.226660 CGCCCGCTTGCCTTTTATG 60.227 57.895 0.00 0.00 0.00 1.90
8359 13552 1.653094 CGCCCGCTTGCCTTTTATGA 61.653 55.000 0.00 0.00 0.00 2.15
8360 13553 0.746659 GCCCGCTTGCCTTTTATGAT 59.253 50.000 0.00 0.00 0.00 2.45
8361 13554 1.536709 GCCCGCTTGCCTTTTATGATG 60.537 52.381 0.00 0.00 0.00 3.07
8362 13555 1.067516 CCCGCTTGCCTTTTATGATGG 59.932 52.381 0.00 0.00 0.00 3.51
8363 13556 1.750778 CCGCTTGCCTTTTATGATGGT 59.249 47.619 0.00 0.00 0.00 3.55
8364 13557 2.480073 CCGCTTGCCTTTTATGATGGTG 60.480 50.000 0.00 0.00 0.00 4.17
8365 13558 2.164219 CGCTTGCCTTTTATGATGGTGT 59.836 45.455 0.00 0.00 0.00 4.16
8366 13559 3.731867 CGCTTGCCTTTTATGATGGTGTC 60.732 47.826 0.00 0.00 0.00 3.67
8367 13560 3.731867 GCTTGCCTTTTATGATGGTGTCG 60.732 47.826 0.00 0.00 0.00 4.35
8368 13561 3.066291 TGCCTTTTATGATGGTGTCGT 57.934 42.857 0.00 0.00 0.00 4.34
8369 13562 3.006940 TGCCTTTTATGATGGTGTCGTC 58.993 45.455 0.00 0.00 0.00 4.20
8370 13563 2.354821 GCCTTTTATGATGGTGTCGTCC 59.645 50.000 0.00 0.00 0.00 4.79
8371 13564 3.605634 CCTTTTATGATGGTGTCGTCCA 58.394 45.455 0.00 0.00 42.01 4.02
8372 13565 3.374058 CCTTTTATGATGGTGTCGTCCAC 59.626 47.826 0.25 0.25 43.74 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 231 0.738412 GCACCCGTAGTTACATGCGT 60.738 55.000 0.00 0.00 0.00 5.24
350 353 1.295792 TTCTGTTTCGACACACTGCC 58.704 50.000 0.00 0.00 0.00 4.85
363 366 3.181433 CCCAAGGTAGTTCCCTTTCTGTT 60.181 47.826 0.00 0.00 42.24 3.16
400 404 1.545706 GGTCCAAGAGGCCTTCGACT 61.546 60.000 6.77 0.00 39.48 4.18
413 417 0.323633 TCGAGTATCACCGGGTCCAA 60.324 55.000 6.32 0.00 33.17 3.53
418 422 0.527817 GTGCTTCGAGTATCACCGGG 60.528 60.000 6.32 0.00 33.17 5.73
503 509 3.788227 TGTCACCACTTCTAGGCAAAT 57.212 42.857 0.00 0.00 0.00 2.32
504 510 3.476552 CTTGTCACCACTTCTAGGCAAA 58.523 45.455 0.00 0.00 0.00 3.68
542 548 4.067192 AGAATTGGGAAAAACTTGCATGC 58.933 39.130 11.82 11.82 0.00 4.06
565 571 8.359642 GCTCTTCTCTGATACTTGATATCTTGT 58.640 37.037 3.98 5.47 40.52 3.16
578 584 4.357325 ACCCTGAAAGCTCTTCTCTGATA 58.643 43.478 9.17 0.00 0.00 2.15
619 625 6.963322 AGCCTCTCCATTATGTTTTCTACTT 58.037 36.000 0.00 0.00 0.00 2.24
802 808 3.470645 AAGCGAGGTAACAACTGAGTT 57.529 42.857 0.00 0.00 41.41 3.01
803 809 3.319972 TGTAAGCGAGGTAACAACTGAGT 59.680 43.478 0.00 0.00 41.41 3.41
804 810 3.909430 TGTAAGCGAGGTAACAACTGAG 58.091 45.455 0.00 0.00 41.41 3.35
805 811 4.021807 TCATGTAAGCGAGGTAACAACTGA 60.022 41.667 0.00 0.00 41.41 3.41
806 812 4.091509 GTCATGTAAGCGAGGTAACAACTG 59.908 45.833 0.00 0.00 41.41 3.16
868 879 2.452491 AGTGGGCTTTGGGAGGGT 60.452 61.111 0.00 0.00 0.00 4.34
944 955 1.152008 AGGAGGGGATCGGGATTCC 60.152 63.158 0.00 0.00 35.63 3.01
1695 2383 1.202313 GCTAGTACGGTCAGAGCTTGG 60.202 57.143 0.00 0.00 0.00 3.61
1710 2398 0.553819 AGGACGGATCTGAGGCTAGT 59.446 55.000 9.00 0.00 0.00 2.57
1719 2407 0.927767 AGGTGTAGGAGGACGGATCT 59.072 55.000 0.00 0.00 0.00 2.75
1746 2434 1.769098 CGATCCCAGCAACATCGCAG 61.769 60.000 0.00 0.00 33.59 5.18
1815 2503 3.006430 TCTTGTAGAACATCGGCAAGTCA 59.994 43.478 12.81 0.00 35.82 3.41
1872 2560 2.763215 GGGTCTGGAATGCCACCA 59.237 61.111 1.82 0.00 39.92 4.17
1890 2578 1.811266 CAACCGTGCCTCCTCATCG 60.811 63.158 0.00 0.00 0.00 3.84
1893 2581 2.425592 CACAACCGTGCCTCCTCA 59.574 61.111 0.00 0.00 36.06 3.86
1997 2685 5.048504 ACACCAAACATCTCATCACAACATC 60.049 40.000 0.00 0.00 0.00 3.06
2116 2804 0.402121 AAACTCCCTTCCAGTCCTGC 59.598 55.000 0.00 0.00 0.00 4.85
2206 2894 8.353423 TCAAAAATATCCTTCCCTTCTTTCAG 57.647 34.615 0.00 0.00 0.00 3.02
2217 2905 6.264067 CCATCCAGTCCTCAAAAATATCCTTC 59.736 42.308 0.00 0.00 0.00 3.46
2350 3038 1.871418 TCAGCAGCATCCTTAGGACT 58.129 50.000 1.74 0.00 32.98 3.85
2481 3169 0.459237 CTAGGCAGCTGTGGAAGTCG 60.459 60.000 16.64 0.00 0.00 4.18
2511 3199 2.202703 CGACTAACTTCCGGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
3119 3807 4.522405 CAGACACCCATGTTATCCACAAAA 59.478 41.667 0.00 0.00 39.95 2.44
3144 3832 8.226448 GCATATGAAAGAAGGTCTGATAATTCG 58.774 37.037 6.97 0.00 0.00 3.34
3287 3975 5.750547 TGACGTGACTAGTTAGTAGATACGG 59.249 44.000 21.31 10.90 41.54 4.02
3406 5081 5.305902 TCAGTCATGTCCAGTAGGTTTACAA 59.694 40.000 0.00 0.00 35.89 2.41
3733 5455 6.146510 CAGTGTAATTAAAACGACCAGCACTA 59.853 38.462 0.00 0.00 33.00 2.74
3993 5715 9.229784 CAATAATGAAGTGTTATGCATCTTGAC 57.770 33.333 0.19 0.00 0.00 3.18
4044 5767 5.816777 TGGCTTGAAAAATCTTTGGTTCTTG 59.183 36.000 0.00 0.00 0.00 3.02
4057 5780 5.413309 TCTTTGGTTCTTGGCTTGAAAAA 57.587 34.783 0.00 0.00 0.00 1.94
4137 5860 6.548441 AAGCGCTAACAAACACAATAAGTA 57.452 33.333 12.05 0.00 0.00 2.24
4157 5880 8.947115 AGGTAGTTACAGAATTCAACAATAAGC 58.053 33.333 8.44 0.00 0.00 3.09
4169 5892 6.729569 ACAACTAGGGAAGGTAGTTACAGAAT 59.270 38.462 0.00 0.00 38.42 2.40
4202 5925 1.020437 GTCATGCTTAGCTTCTGGGC 58.980 55.000 5.60 0.00 0.00 5.36
4253 5976 4.799564 AGTGAAAACCAGCAAACAGAAA 57.200 36.364 0.00 0.00 0.00 2.52
4306 6032 6.034683 CCAAGTCTTTAGTAATACTGTCACGC 59.965 42.308 2.68 0.00 0.00 5.34
4308 6034 7.097834 AGCCAAGTCTTTAGTAATACTGTCAC 58.902 38.462 2.68 0.00 0.00 3.67
4322 6048 7.800092 ACATTATCTCATAGAGCCAAGTCTTT 58.200 34.615 0.00 0.00 0.00 2.52
4462 9393 9.811995 AGTAAGATACGCTAATGTATTTGTTGA 57.188 29.630 0.00 0.00 35.24 3.18
4465 9396 9.811995 TCAAGTAAGATACGCTAATGTATTTGT 57.188 29.630 0.00 0.00 35.24 2.83
4505 9436 7.345653 AGACATCCCTCATTACTGAAGAACATA 59.654 37.037 0.00 0.00 0.00 2.29
4620 9552 3.500680 TGGTCGCATTACTTCCTCAAAAC 59.499 43.478 0.00 0.00 0.00 2.43
4748 9680 5.008019 AGAGTTATATCATTGCACCAAAGCG 59.992 40.000 0.00 0.00 37.31 4.68
4968 9908 5.003804 AGACATAGTGACCAACCAAATCAC 58.996 41.667 0.00 0.00 42.54 3.06
5025 9965 8.970691 ATCAACATTGTATTTGTTTAGTGCTC 57.029 30.769 0.00 0.00 35.18 4.26
5126 10066 1.865340 GTTTCGACTTGGTCACCAGTC 59.135 52.381 13.61 13.61 33.81 3.51
5184 10124 4.973168 ACAACACAGCTAGAGATGGAAAA 58.027 39.130 0.00 0.00 35.42 2.29
5220 10160 7.591006 TTTAAGTCCTATAGCACACTTTTCG 57.409 36.000 12.58 0.00 31.52 3.46
5229 10169 6.001449 ACATTGGCTTTAAGTCCTATAGCA 57.999 37.500 0.00 0.00 36.57 3.49
5230 10170 8.622948 ATTACATTGGCTTTAAGTCCTATAGC 57.377 34.615 0.00 0.00 34.72 2.97
5412 10352 6.464222 GGATAGGATATCACCAATGAAACGA 58.536 40.000 4.83 0.00 38.69 3.85
5601 10541 6.711645 ACAGAAAAATTACTTACGTAGCCCAA 59.288 34.615 0.00 0.00 0.00 4.12
5621 10561 6.804677 ACATGTACAGCAATTTCAAACAGAA 58.195 32.000 0.00 0.00 0.00 3.02
6138 11091 2.823154 CACAATACGGAAAACCCCATGT 59.177 45.455 0.00 0.00 0.00 3.21
6157 11110 1.003223 GGTTTGTACTCGTTGGTGCAC 60.003 52.381 8.80 8.80 32.04 4.57
6188 11141 5.639082 AGCAAACTAGTTTATGCAAATTGGC 59.361 36.000 26.28 18.46 0.00 4.52
6528 11482 6.419413 GCCAAATCACACAACGAAAAATAAGA 59.581 34.615 0.00 0.00 0.00 2.10
6631 11585 2.229792 TGACTTGGGTGTTCTTGATGC 58.770 47.619 0.00 0.00 0.00 3.91
7117 12130 6.239402 CCTTGATGAAGGGAGAACAAAACATT 60.239 38.462 2.47 0.00 44.76 2.71
7142 12157 5.921408 CCATATCTAAAACCTAGTCGACAGC 59.079 44.000 19.50 0.00 0.00 4.40
7165 12180 7.062722 GCTGCTTTTCAATTAGACAGAAATTCC 59.937 37.037 0.00 0.00 32.00 3.01
7465 12480 0.463204 ACAGATCTCACCCATCAGCG 59.537 55.000 0.00 0.00 0.00 5.18
7532 12547 0.942252 CATGGATGTGCTGACCATCG 59.058 55.000 0.00 0.00 41.68 3.84
7663 12838 4.636206 ACGTAGAAAAAGCATCTGATTCCC 59.364 41.667 0.00 0.00 0.00 3.97
7740 12915 4.142315 CCAAAAATGGTGAGCTGGTATCAG 60.142 45.833 0.00 0.00 43.64 2.90
7874 13049 5.109210 CAGCCTCACAACTGTTCGAATATA 58.891 41.667 0.00 0.00 0.00 0.86
7875 13050 3.935203 CAGCCTCACAACTGTTCGAATAT 59.065 43.478 0.00 0.00 0.00 1.28
7876 13051 3.325870 CAGCCTCACAACTGTTCGAATA 58.674 45.455 0.00 0.00 0.00 1.75
7968 13143 5.048294 GGCGACCCTTTTGAAAGATAGAAAA 60.048 40.000 5.09 0.00 38.28 2.29
7969 13144 4.457949 GGCGACCCTTTTGAAAGATAGAAA 59.542 41.667 5.09 0.00 38.28 2.52
8037 13222 2.027625 GGTTCGAGGGTCAGCGTTG 61.028 63.158 0.00 0.00 0.00 4.10
8043 13236 0.109532 TGCAAATGGTTCGAGGGTCA 59.890 50.000 0.00 0.00 0.00 4.02
8044 13237 1.463674 ATGCAAATGGTTCGAGGGTC 58.536 50.000 0.00 0.00 0.00 4.46
8068 13261 2.202892 GATGGGAGAACGGTCCGC 60.203 66.667 12.28 0.00 37.50 5.54
8074 13267 2.582498 GCGGACGATGGGAGAACG 60.582 66.667 0.00 0.00 0.00 3.95
8075 13268 1.519455 CAGCGGACGATGGGAGAAC 60.519 63.158 1.50 0.00 0.00 3.01
8076 13269 2.892640 CAGCGGACGATGGGAGAA 59.107 61.111 1.50 0.00 0.00 2.87
8077 13270 3.838271 GCAGCGGACGATGGGAGA 61.838 66.667 12.06 0.00 31.39 3.71
8078 13271 4.147449 TGCAGCGGACGATGGGAG 62.147 66.667 12.06 0.00 31.39 4.30
8079 13272 4.147449 CTGCAGCGGACGATGGGA 62.147 66.667 12.06 0.00 31.39 4.37
8080 13273 4.147449 TCTGCAGCGGACGATGGG 62.147 66.667 9.47 0.00 31.39 4.00
8081 13274 2.584418 CTCTGCAGCGGACGATGG 60.584 66.667 9.47 0.00 31.39 3.51
8082 13275 2.163390 CACTCTGCAGCGGACGATG 61.163 63.158 9.47 5.50 34.24 3.84
8083 13276 2.182791 CACTCTGCAGCGGACGAT 59.817 61.111 9.47 0.00 0.00 3.73
8084 13277 4.056125 CCACTCTGCAGCGGACGA 62.056 66.667 9.47 0.00 0.00 4.20
8085 13278 4.363990 ACCACTCTGCAGCGGACG 62.364 66.667 19.70 0.00 0.00 4.79
8086 13279 2.433318 GACCACTCTGCAGCGGAC 60.433 66.667 19.70 11.92 0.00 4.79
8087 13280 2.917227 TGACCACTCTGCAGCGGA 60.917 61.111 19.70 3.23 0.00 5.54
8088 13281 2.721971 AAGTGACCACTCTGCAGCGG 62.722 60.000 9.47 11.85 41.58 5.52
8089 13282 0.882042 AAAGTGACCACTCTGCAGCG 60.882 55.000 9.47 5.22 41.58 5.18
8090 13283 1.312815 AAAAGTGACCACTCTGCAGC 58.687 50.000 9.47 0.00 41.58 5.25
8108 13301 6.414408 TTTGCTTTCAATTTGCGAGAAAAA 57.586 29.167 0.00 0.00 31.59 1.94
8109 13302 5.502220 GCTTTGCTTTCAATTTGCGAGAAAA 60.502 36.000 0.00 0.00 31.59 2.29
8110 13303 4.025813 GCTTTGCTTTCAATTTGCGAGAAA 60.026 37.500 0.00 0.00 31.33 2.52
8111 13304 3.490526 GCTTTGCTTTCAATTTGCGAGAA 59.509 39.130 0.00 0.00 31.33 2.87
8112 13305 3.052036 GCTTTGCTTTCAATTTGCGAGA 58.948 40.909 0.00 0.00 31.33 4.04
8113 13306 3.054878 AGCTTTGCTTTCAATTTGCGAG 58.945 40.909 0.00 0.00 33.89 5.03
8114 13307 2.796031 CAGCTTTGCTTTCAATTTGCGA 59.204 40.909 0.00 0.00 36.40 5.10
8115 13308 2.096614 CCAGCTTTGCTTTCAATTTGCG 60.097 45.455 0.00 0.00 36.40 4.85
8116 13309 2.224784 CCCAGCTTTGCTTTCAATTTGC 59.775 45.455 0.00 0.00 36.40 3.68
8117 13310 2.809696 CCCCAGCTTTGCTTTCAATTTG 59.190 45.455 0.00 0.00 36.40 2.32
8118 13311 2.224597 CCCCCAGCTTTGCTTTCAATTT 60.225 45.455 0.00 0.00 36.40 1.82
8119 13312 1.348696 CCCCCAGCTTTGCTTTCAATT 59.651 47.619 0.00 0.00 36.40 2.32
8120 13313 0.978907 CCCCCAGCTTTGCTTTCAAT 59.021 50.000 0.00 0.00 36.40 2.57
8121 13314 2.439837 CCCCCAGCTTTGCTTTCAA 58.560 52.632 0.00 0.00 36.40 2.69
8122 13315 4.196372 CCCCCAGCTTTGCTTTCA 57.804 55.556 0.00 0.00 36.40 2.69
8138 13331 3.365265 CTCGCACAAAGCACCCCC 61.365 66.667 0.00 0.00 46.13 5.40
8139 13332 1.734388 AAACTCGCACAAAGCACCCC 61.734 55.000 0.00 0.00 46.13 4.95
8140 13333 0.594796 CAAACTCGCACAAAGCACCC 60.595 55.000 0.00 0.00 46.13 4.61
8141 13334 0.380378 TCAAACTCGCACAAAGCACC 59.620 50.000 0.00 0.00 46.13 5.01
8142 13335 1.846175 GTTCAAACTCGCACAAAGCAC 59.154 47.619 0.00 0.00 46.13 4.40
8143 13336 1.470494 TGTTCAAACTCGCACAAAGCA 59.530 42.857 0.00 0.00 46.13 3.91
8144 13337 2.111756 CTGTTCAAACTCGCACAAAGC 58.888 47.619 0.00 0.00 40.87 3.51
8145 13338 2.111756 GCTGTTCAAACTCGCACAAAG 58.888 47.619 0.00 0.00 0.00 2.77
8146 13339 1.470494 TGCTGTTCAAACTCGCACAAA 59.530 42.857 6.41 0.00 33.48 2.83
8147 13340 1.063912 CTGCTGTTCAAACTCGCACAA 59.936 47.619 6.41 0.00 34.28 3.33
8148 13341 0.657312 CTGCTGTTCAAACTCGCACA 59.343 50.000 6.41 0.00 34.28 4.57
8149 13342 0.658536 GCTGCTGTTCAAACTCGCAC 60.659 55.000 0.00 2.62 34.28 5.34
8150 13343 1.648720 GCTGCTGTTCAAACTCGCA 59.351 52.632 0.00 9.08 35.73 5.10
8151 13344 1.081840 GGCTGCTGTTCAAACTCGC 60.082 57.895 0.00 0.00 0.00 5.03
8152 13345 0.877071 ATGGCTGCTGTTCAAACTCG 59.123 50.000 0.00 0.00 0.00 4.18
8153 13346 1.610522 ACATGGCTGCTGTTCAAACTC 59.389 47.619 0.00 0.00 0.00 3.01
8154 13347 1.696063 ACATGGCTGCTGTTCAAACT 58.304 45.000 0.00 0.00 0.00 2.66
8155 13348 2.095059 CCTACATGGCTGCTGTTCAAAC 60.095 50.000 0.00 0.00 0.00 2.93
8156 13349 2.161855 CCTACATGGCTGCTGTTCAAA 58.838 47.619 0.00 0.00 0.00 2.69
8157 13350 1.350684 TCCTACATGGCTGCTGTTCAA 59.649 47.619 0.00 0.00 35.26 2.69
8158 13351 0.983467 TCCTACATGGCTGCTGTTCA 59.017 50.000 0.00 0.00 35.26 3.18
8159 13352 1.661341 CTCCTACATGGCTGCTGTTC 58.339 55.000 0.00 0.00 35.26 3.18
8160 13353 0.254178 CCTCCTACATGGCTGCTGTT 59.746 55.000 0.00 0.00 35.26 3.16
8161 13354 1.630126 CCCTCCTACATGGCTGCTGT 61.630 60.000 0.00 0.00 35.26 4.40
8162 13355 1.147824 CCCTCCTACATGGCTGCTG 59.852 63.158 0.00 0.00 35.26 4.41
8163 13356 1.307343 ACCCTCCTACATGGCTGCT 60.307 57.895 0.00 0.00 35.26 4.24
8164 13357 1.153086 CACCCTCCTACATGGCTGC 60.153 63.158 0.00 0.00 35.26 5.25
8165 13358 0.107508 CACACCCTCCTACATGGCTG 60.108 60.000 0.00 0.00 35.26 4.85
8166 13359 1.915078 GCACACCCTCCTACATGGCT 61.915 60.000 0.00 0.00 35.26 4.75
8167 13360 1.452108 GCACACCCTCCTACATGGC 60.452 63.158 0.00 0.00 35.26 4.40
8168 13361 0.107508 CTGCACACCCTCCTACATGG 60.108 60.000 0.00 0.00 37.10 3.66
8169 13362 0.745845 GCTGCACACCCTCCTACATG 60.746 60.000 0.00 0.00 0.00 3.21
8170 13363 1.604378 GCTGCACACCCTCCTACAT 59.396 57.895 0.00 0.00 0.00 2.29
8171 13364 2.592993 GGCTGCACACCCTCCTACA 61.593 63.158 0.50 0.00 0.00 2.74
8172 13365 1.915078 ATGGCTGCACACCCTCCTAC 61.915 60.000 0.50 0.00 0.00 3.18
8173 13366 1.616327 ATGGCTGCACACCCTCCTA 60.616 57.895 0.50 0.00 0.00 2.94
8174 13367 2.937689 ATGGCTGCACACCCTCCT 60.938 61.111 0.50 0.00 0.00 3.69
8175 13368 2.196997 TACATGGCTGCACACCCTCC 62.197 60.000 0.50 0.00 0.00 4.30
8176 13369 0.745845 CTACATGGCTGCACACCCTC 60.746 60.000 0.50 0.00 0.00 4.30
8177 13370 1.300963 CTACATGGCTGCACACCCT 59.699 57.895 0.50 0.00 0.00 4.34
8178 13371 1.750399 CCTACATGGCTGCACACCC 60.750 63.158 0.50 0.00 0.00 4.61
8179 13372 0.745845 CTCCTACATGGCTGCACACC 60.746 60.000 0.50 0.00 35.26 4.16
8180 13373 0.036010 ACTCCTACATGGCTGCACAC 60.036 55.000 0.50 0.00 35.26 3.82
8181 13374 0.250234 GACTCCTACATGGCTGCACA 59.750 55.000 0.50 0.00 35.26 4.57
8182 13375 0.462759 GGACTCCTACATGGCTGCAC 60.463 60.000 0.50 0.00 35.26 4.57
8183 13376 0.618680 AGGACTCCTACATGGCTGCA 60.619 55.000 0.50 0.00 35.26 4.41
8184 13377 1.414158 TAGGACTCCTACATGGCTGC 58.586 55.000 0.03 0.00 34.61 5.25
8193 13386 1.287146 GGTCAGGGTGTAGGACTCCTA 59.713 57.143 0.03 0.03 34.61 2.94
8194 13387 0.041386 GGTCAGGGTGTAGGACTCCT 59.959 60.000 2.31 2.31 37.71 3.69
8195 13388 0.976590 GGGTCAGGGTGTAGGACTCC 60.977 65.000 0.00 0.00 0.00 3.85
8196 13389 0.252103 TGGGTCAGGGTGTAGGACTC 60.252 60.000 0.00 0.00 32.63 3.36
8197 13390 0.544595 GTGGGTCAGGGTGTAGGACT 60.545 60.000 0.00 0.00 0.00 3.85
8198 13391 0.544595 AGTGGGTCAGGGTGTAGGAC 60.545 60.000 0.00 0.00 0.00 3.85
8199 13392 1.086565 TAGTGGGTCAGGGTGTAGGA 58.913 55.000 0.00 0.00 0.00 2.94
8200 13393 1.946984 TTAGTGGGTCAGGGTGTAGG 58.053 55.000 0.00 0.00 0.00 3.18
8201 13394 3.118371 GGATTTAGTGGGTCAGGGTGTAG 60.118 52.174 0.00 0.00 0.00 2.74
8202 13395 2.841881 GGATTTAGTGGGTCAGGGTGTA 59.158 50.000 0.00 0.00 0.00 2.90
8203 13396 1.633945 GGATTTAGTGGGTCAGGGTGT 59.366 52.381 0.00 0.00 0.00 4.16
8204 13397 1.064685 GGGATTTAGTGGGTCAGGGTG 60.065 57.143 0.00 0.00 0.00 4.61
8205 13398 1.203570 AGGGATTTAGTGGGTCAGGGT 60.204 52.381 0.00 0.00 0.00 4.34
8206 13399 1.596496 AGGGATTTAGTGGGTCAGGG 58.404 55.000 0.00 0.00 0.00 4.45
8207 13400 2.846827 AGAAGGGATTTAGTGGGTCAGG 59.153 50.000 0.00 0.00 0.00 3.86
8208 13401 3.118223 GGAGAAGGGATTTAGTGGGTCAG 60.118 52.174 0.00 0.00 0.00 3.51
8209 13402 2.844348 GGAGAAGGGATTTAGTGGGTCA 59.156 50.000 0.00 0.00 0.00 4.02
8210 13403 2.158943 CGGAGAAGGGATTTAGTGGGTC 60.159 54.545 0.00 0.00 0.00 4.46
8211 13404 1.838077 CGGAGAAGGGATTTAGTGGGT 59.162 52.381 0.00 0.00 0.00 4.51
8212 13405 1.141053 CCGGAGAAGGGATTTAGTGGG 59.859 57.143 0.00 0.00 0.00 4.61
8213 13406 2.622064 CCGGAGAAGGGATTTAGTGG 57.378 55.000 0.00 0.00 0.00 4.00
8223 13416 1.490910 AGAAAATAGGCCCGGAGAAGG 59.509 52.381 0.73 0.00 0.00 3.46
8224 13417 3.118223 AGAAGAAAATAGGCCCGGAGAAG 60.118 47.826 0.73 0.00 0.00 2.85
8225 13418 2.844348 AGAAGAAAATAGGCCCGGAGAA 59.156 45.455 0.73 0.00 0.00 2.87
8226 13419 2.170607 CAGAAGAAAATAGGCCCGGAGA 59.829 50.000 0.73 0.00 0.00 3.71
8227 13420 2.170607 TCAGAAGAAAATAGGCCCGGAG 59.829 50.000 0.73 0.00 0.00 4.63
8228 13421 2.193127 TCAGAAGAAAATAGGCCCGGA 58.807 47.619 0.73 0.00 0.00 5.14
8229 13422 2.710096 TCAGAAGAAAATAGGCCCGG 57.290 50.000 0.00 0.00 0.00 5.73
8230 13423 3.812053 CAGATCAGAAGAAAATAGGCCCG 59.188 47.826 0.00 0.00 0.00 6.13
8231 13424 3.567585 GCAGATCAGAAGAAAATAGGCCC 59.432 47.826 0.00 0.00 0.00 5.80
8232 13425 3.567585 GGCAGATCAGAAGAAAATAGGCC 59.432 47.826 0.00 0.00 0.00 5.19
8233 13426 3.567585 GGGCAGATCAGAAGAAAATAGGC 59.432 47.826 0.00 0.00 0.00 3.93
8234 13427 4.140536 GGGGCAGATCAGAAGAAAATAGG 58.859 47.826 0.00 0.00 0.00 2.57
8235 13428 5.046288 AGGGGCAGATCAGAAGAAAATAG 57.954 43.478 0.00 0.00 0.00 1.73
8236 13429 5.192522 AGAAGGGGCAGATCAGAAGAAAATA 59.807 40.000 0.00 0.00 0.00 1.40
8237 13430 4.017683 AGAAGGGGCAGATCAGAAGAAAAT 60.018 41.667 0.00 0.00 0.00 1.82
8238 13431 3.331889 AGAAGGGGCAGATCAGAAGAAAA 59.668 43.478 0.00 0.00 0.00 2.29
8239 13432 2.915604 AGAAGGGGCAGATCAGAAGAAA 59.084 45.455 0.00 0.00 0.00 2.52
8240 13433 2.503356 GAGAAGGGGCAGATCAGAAGAA 59.497 50.000 0.00 0.00 0.00 2.52
8241 13434 2.114616 GAGAAGGGGCAGATCAGAAGA 58.885 52.381 0.00 0.00 0.00 2.87
8242 13435 1.140652 GGAGAAGGGGCAGATCAGAAG 59.859 57.143 0.00 0.00 0.00 2.85
8243 13436 1.207791 GGAGAAGGGGCAGATCAGAA 58.792 55.000 0.00 0.00 0.00 3.02
8244 13437 0.692419 GGGAGAAGGGGCAGATCAGA 60.692 60.000 0.00 0.00 0.00 3.27
8245 13438 0.693767 AGGGAGAAGGGGCAGATCAG 60.694 60.000 0.00 0.00 0.00 2.90
8246 13439 0.692419 GAGGGAGAAGGGGCAGATCA 60.692 60.000 0.00 0.00 0.00 2.92
8247 13440 1.414866 GGAGGGAGAAGGGGCAGATC 61.415 65.000 0.00 0.00 0.00 2.75
8248 13441 1.385206 GGAGGGAGAAGGGGCAGAT 60.385 63.158 0.00 0.00 0.00 2.90
8249 13442 2.041265 GGAGGGAGAAGGGGCAGA 59.959 66.667 0.00 0.00 0.00 4.26
8250 13443 2.041928 AGGAGGGAGAAGGGGCAG 59.958 66.667 0.00 0.00 0.00 4.85
8251 13444 2.041265 GAGGAGGGAGAAGGGGCA 59.959 66.667 0.00 0.00 0.00 5.36
8252 13445 2.069430 CAGAGGAGGGAGAAGGGGC 61.069 68.421 0.00 0.00 0.00 5.80
8253 13446 0.689412 GTCAGAGGAGGGAGAAGGGG 60.689 65.000 0.00 0.00 0.00 4.79
8254 13447 1.040339 CGTCAGAGGAGGGAGAAGGG 61.040 65.000 0.00 0.00 0.00 3.95
8255 13448 0.033991 TCGTCAGAGGAGGGAGAAGG 60.034 60.000 0.00 0.00 0.00 3.46
8256 13449 1.680735 CATCGTCAGAGGAGGGAGAAG 59.319 57.143 0.00 0.00 0.00 2.85
8257 13450 1.769026 CATCGTCAGAGGAGGGAGAA 58.231 55.000 0.00 0.00 0.00 2.87
8258 13451 0.753479 GCATCGTCAGAGGAGGGAGA 60.753 60.000 6.89 0.00 0.00 3.71
8259 13452 1.739049 GCATCGTCAGAGGAGGGAG 59.261 63.158 6.89 0.00 0.00 4.30
8260 13453 1.758514 GGCATCGTCAGAGGAGGGA 60.759 63.158 6.89 0.00 0.00 4.20
8261 13454 2.060383 TGGCATCGTCAGAGGAGGG 61.060 63.158 6.89 0.00 0.00 4.30
8262 13455 1.142748 GTGGCATCGTCAGAGGAGG 59.857 63.158 0.30 0.30 0.00 4.30
8263 13456 1.142748 GGTGGCATCGTCAGAGGAG 59.857 63.158 0.00 0.00 0.00 3.69
8264 13457 2.710902 CGGTGGCATCGTCAGAGGA 61.711 63.158 12.96 0.00 0.00 3.71
8265 13458 2.202797 CGGTGGCATCGTCAGAGG 60.203 66.667 12.96 0.00 0.00 3.69
8266 13459 1.079819 AACGGTGGCATCGTCAGAG 60.080 57.895 27.69 0.00 40.18 3.35
8267 13460 1.374125 CAACGGTGGCATCGTCAGA 60.374 57.895 27.69 0.00 40.18 3.27
8268 13461 0.389296 TACAACGGTGGCATCGTCAG 60.389 55.000 27.69 23.07 40.18 3.51
8269 13462 0.668096 GTACAACGGTGGCATCGTCA 60.668 55.000 27.69 12.08 40.18 4.35
8270 13463 1.680105 CGTACAACGGTGGCATCGTC 61.680 60.000 27.69 12.95 40.18 4.20
8271 13464 1.735198 CGTACAACGGTGGCATCGT 60.735 57.895 21.92 21.92 43.14 3.73
8272 13465 3.077705 CGTACAACGGTGGCATCG 58.922 61.111 20.23 20.23 38.08 3.84
8289 13482 0.737715 CTTGTGTGGCGGCTAGAGAC 60.738 60.000 11.43 0.00 0.00 3.36
8290 13483 1.591703 CTTGTGTGGCGGCTAGAGA 59.408 57.895 11.43 0.00 0.00 3.10
8291 13484 2.103042 GCTTGTGTGGCGGCTAGAG 61.103 63.158 11.43 2.42 0.00 2.43
8292 13485 2.047274 GCTTGTGTGGCGGCTAGA 60.047 61.111 11.43 0.00 0.00 2.43
8293 13486 1.308069 AATGCTTGTGTGGCGGCTAG 61.308 55.000 11.43 1.07 0.00 3.42
8294 13487 1.303236 AATGCTTGTGTGGCGGCTA 60.303 52.632 11.43 0.00 0.00 3.93
8295 13488 2.598394 AATGCTTGTGTGGCGGCT 60.598 55.556 11.43 0.00 0.00 5.52
8296 13489 2.431260 CAATGCTTGTGTGGCGGC 60.431 61.111 0.00 0.00 0.00 6.53
8297 13490 2.431260 GCAATGCTTGTGTGGCGG 60.431 61.111 0.00 0.00 0.00 6.13
8298 13491 2.431260 GGCAATGCTTGTGTGGCG 60.431 61.111 4.82 0.00 0.00 5.69
8299 13492 2.431260 CGGCAATGCTTGTGTGGC 60.431 61.111 4.82 0.00 34.67 5.01
8300 13493 2.259204 CCGGCAATGCTTGTGTGG 59.741 61.111 4.82 0.00 0.00 4.17
8301 13494 2.259204 CCCGGCAATGCTTGTGTG 59.741 61.111 4.82 0.00 0.00 3.82
8302 13495 3.683937 GCCCGGCAATGCTTGTGT 61.684 61.111 3.91 0.00 0.00 3.72
8303 13496 4.440127 GGCCCGGCAATGCTTGTG 62.440 66.667 12.58 0.00 0.00 3.33
8304 13497 4.684134 AGGCCCGGCAATGCTTGT 62.684 61.111 12.58 0.00 0.00 3.16
8305 13498 3.830192 GAGGCCCGGCAATGCTTG 61.830 66.667 12.58 0.00 0.00 4.01
8319 13512 3.197790 CGATGCCAGTTGCGGAGG 61.198 66.667 0.00 0.00 45.60 4.30
8320 13513 2.125552 TCGATGCCAGTTGCGGAG 60.126 61.111 0.00 0.00 45.60 4.63
8321 13514 2.434185 GTCGATGCCAGTTGCGGA 60.434 61.111 0.00 0.00 45.60 5.54
8322 13515 2.741985 TGTCGATGCCAGTTGCGG 60.742 61.111 0.00 0.00 45.60 5.69
8323 13516 2.476051 GTGTCGATGCCAGTTGCG 59.524 61.111 0.00 0.00 45.60 4.85
8324 13517 2.476051 CGTGTCGATGCCAGTTGC 59.524 61.111 0.00 0.00 41.77 4.17
8325 13518 2.476051 GCGTGTCGATGCCAGTTG 59.524 61.111 0.00 0.00 0.00 3.16
8332 13525 3.853330 CAAGCGGGCGTGTCGATG 61.853 66.667 0.00 0.00 0.00 3.84
8341 13534 0.746659 ATCATAAAAGGCAAGCGGGC 59.253 50.000 0.00 0.00 43.80 6.13
8342 13535 1.067516 CCATCATAAAAGGCAAGCGGG 59.932 52.381 0.00 0.00 0.00 6.13
8343 13536 1.750778 ACCATCATAAAAGGCAAGCGG 59.249 47.619 0.00 0.00 0.00 5.52
8344 13537 2.164219 ACACCATCATAAAAGGCAAGCG 59.836 45.455 0.00 0.00 0.00 4.68
8345 13538 3.731867 CGACACCATCATAAAAGGCAAGC 60.732 47.826 0.00 0.00 0.00 4.01
8346 13539 3.440173 ACGACACCATCATAAAAGGCAAG 59.560 43.478 0.00 0.00 0.00 4.01
8347 13540 3.417101 ACGACACCATCATAAAAGGCAA 58.583 40.909 0.00 0.00 0.00 4.52
8348 13541 3.006940 GACGACACCATCATAAAAGGCA 58.993 45.455 0.00 0.00 0.00 4.75
8349 13542 2.354821 GGACGACACCATCATAAAAGGC 59.645 50.000 0.00 0.00 0.00 4.35
8350 13543 3.374058 GTGGACGACACCATCATAAAAGG 59.626 47.826 0.00 0.00 44.49 3.11
8351 13544 4.600012 GTGGACGACACCATCATAAAAG 57.400 45.455 0.00 0.00 44.49 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.