AutoCloner

Multiple sequence alignment - TraesCS3A01G319400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G319400	chr3A	100.000	2841	0	0	1	2841	561398940	561401780	0.000000e+00	5247
1	TraesCS3A01G319400	chr3A	98.750	800	9	1	2043	2841	561393924	561394723	0.000000e+00	1421
2	TraesCS3A01G319400	chr2D	86.897	1969	194	30	909	2841	518250011	518251951	0.000000e+00	2148
3	TraesCS3A01G319400	chr2D	93.661	489	29	2	2354	2841	455687662	455687175	0.000000e+00	730
4	TraesCS3A01G319400	chr2D	92.667	150	11	0	3	152	518215334	518215483	1.710000e-52	217
5	TraesCS3A01G319400	chr6B	88.608	1466	133	23	909	2361	708220845	708222289	0.000000e+00	1751
6	TraesCS3A01G319400	chr6B	91.899	1074	75	8	909	1981	118026167	118027229	0.000000e+00	1491
7	TraesCS3A01G319400	chr6B	91.057	738	51	10	152	882	118025441	118026170	0.000000e+00	983
8	TraesCS3A01G319400	chr6B	93.333	150	10	0	3	152	118025328	118025477	3.680000e-54	222
9	TraesCS3A01G319400	chr5A	87.492	1487	126	28	909	2367	676353688	676355142	0.000000e+00	1661
10	TraesCS3A01G319400	chr5A	92.991	1013	57	6	1348	2358	493201164	493202164	0.000000e+00	1465
11	TraesCS3A01G319400	chr5A	92.112	748	48	9	146	884	676352948	676353693	0.000000e+00	1044
12	TraesCS3A01G319400	chr5A	94.000	150	9	0	3	152	676352843	676352992	7.920000e-56	228
13	TraesCS3A01G319400	chr7D	93.860	1075	57	5	909	1981	58620701	58621768	0.000000e+00	1611
14	TraesCS3A01G319400	chr7D	89.209	1075	101	9	909	1981	118903229	118902168	0.000000e+00	1328
15	TraesCS3A01G319400	chr7D	90.946	740	55	6	152	884	58619972	58620706	0.000000e+00	985
16	TraesCS3A01G319400	chr7D	93.661	489	29	2	2354	2841	223167581	223167094	0.000000e+00	730
17	TraesCS3A01G319400	chr7D	92.405	395	25	5	1972	2362	58621792	58622185	2.470000e-155	558
18	TraesCS3A01G319400	chr3B	92.444	1072	70	7	909	1979	283638765	283639826	0.000000e+00	1520
19	TraesCS3A01G319400	chr3B	88.571	385	31	3	1971	2354	283639852	283640224	3.340000e-124	455
20	TraesCS3A01G319400	chr3B	94.667	150	8	0	3	152	283638467	283638616	1.700000e-57	233
21	TraesCS3A01G319400	chr4A	91.791	1072	77	4	909	1979	690356785	690357846	0.000000e+00	1482
22	TraesCS3A01G319400	chr4A	92.162	740	51	4	152	884	690356051	690356790	0.000000e+00	1038
23	TraesCS3A01G319400	chr4A	93.333	150	10	0	3	152	690355938	690356087	3.680000e-54	222
24	TraesCS3A01G319400	chr5B	91.628	1075	77	6	909	1981	382535319	382536382	0.000000e+00	1474
25	TraesCS3A01G319400	chr5B	92.297	740	48	6	152	884	382534587	382535324	0.000000e+00	1042
26	TraesCS3A01G319400	chr5B	87.279	621	69	6	273	884	501692599	501693218	0.000000e+00	701
27	TraesCS3A01G319400	chr5B	85.678	391	35	3	1971	2360	382536406	382536776	2.650000e-105	392
28	TraesCS3A01G319400	chr5B	94.667	150	8	0	3	152	382534474	382534623	1.700000e-57	233
29	TraesCS3A01G319400	chr5B	94.000	150	8	1	3	152	680368898	680368750	2.850000e-55	226
30	TraesCS3A01G319400	chr7A	90.977	1075	73	12	909	1981	674509726	674508674	0.000000e+00	1426
31	TraesCS3A01G319400	chr7A	91.757	740	52	6	152	884	674510458	674509721	0.000000e+00	1020
32	TraesCS3A01G319400	chr7A	93.377	151	10	0	2	152	674510572	674510422	1.020000e-54	224
33	TraesCS3A01G319400	chrUn	94.924	591	26	2	152	738	50577112	50577702	0.000000e+00	922
34	TraesCS3A01G319400	chrUn	94.677	526	23	4	1842	2362	50976407	50975882	0.000000e+00	811
35	TraesCS3A01G319400	chrUn	94.677	526	23	4	1842	2362	466483063	466482538	0.000000e+00	811
36	TraesCS3A01G319400	chrUn	94.040	151	9	0	2	152	50576998	50577148	2.200000e-56	230
37	TraesCS3A01G319400	chr1B	92.675	628	36	8	286	908	638548931	638548309	0.000000e+00	896
38	TraesCS3A01G319400	chr6D	93.661	489	29	2	2354	2841	99775749	99775262	0.000000e+00	730
39	TraesCS3A01G319400	chr3D	93.661	489	29	2	2354	2841	319637369	319636882	0.000000e+00	730
40	TraesCS3A01G319400	chr3D	93.661	489	28	3	2354	2840	36815985	36815498	0.000000e+00	728
41	TraesCS3A01G319400	chr3D	93.648	488	29	2	2354	2840	260914890	260914404	0.000000e+00	728
42	TraesCS3A01G319400	chr3D	93.661	489	28	3	2354	2841	313596160	313596646	0.000000e+00	728

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G319400	chr3A	561398940	561401780	2840	False	5247.000000	5247	100.000000	1	2841	1	chr3A.!!$F2	2840
1	TraesCS3A01G319400	chr3A	561393924	561394723	799	False	1421.000000	1421	98.750000	2043	2841	1	chr3A.!!$F1	798
2	TraesCS3A01G319400	chr2D	518250011	518251951	1940	False	2148.000000	2148	86.897000	909	2841	1	chr2D.!!$F2	1932
3	TraesCS3A01G319400	chr6B	708220845	708222289	1444	False	1751.000000	1751	88.608000	909	2361	1	chr6B.!!$F1	1452
4	TraesCS3A01G319400	chr6B	118025328	118027229	1901	False	898.666667	1491	92.096333	3	1981	3	chr6B.!!$F2	1978
5	TraesCS3A01G319400	chr5A	493201164	493202164	1000	False	1465.000000	1465	92.991000	1348	2358	1	chr5A.!!$F1	1010
6	TraesCS3A01G319400	chr5A	676352843	676355142	2299	False	977.666667	1661	91.201333	3	2367	3	chr5A.!!$F2	2364
7	TraesCS3A01G319400	chr7D	118902168	118903229	1061	True	1328.000000	1328	89.209000	909	1981	1	chr7D.!!$R1	1072
8	TraesCS3A01G319400	chr7D	58619972	58622185	2213	False	1051.333333	1611	92.403667	152	2362	3	chr7D.!!$F1	2210
9	TraesCS3A01G319400	chr3B	283638467	283640224	1757	False	736.000000	1520	91.894000	3	2354	3	chr3B.!!$F1	2351
10	TraesCS3A01G319400	chr4A	690355938	690357846	1908	False	914.000000	1482	92.428667	3	1979	3	chr4A.!!$F1	1976
11	TraesCS3A01G319400	chr5B	382534474	382536776	2302	False	785.250000	1474	91.067500	3	2360	4	chr5B.!!$F2	2357
12	TraesCS3A01G319400	chr5B	501692599	501693218	619	False	701.000000	701	87.279000	273	884	1	chr5B.!!$F1	611
13	TraesCS3A01G319400	chr7A	674508674	674510572	1898	True	890.000000	1426	92.037000	2	1981	3	chr7A.!!$R1	1979
14	TraesCS3A01G319400	chrUn	50975882	50976407	525	True	811.000000	811	94.677000	1842	2362	1	chrUn.!!$R1	520
15	TraesCS3A01G319400	chrUn	466482538	466483063	525	True	811.000000	811	94.677000	1842	2362	1	chrUn.!!$R2	520
16	TraesCS3A01G319400	chrUn	50576998	50577702	704	False	576.000000	922	94.482000	2	738	2	chrUn.!!$F1	736
17	TraesCS3A01G319400	chr1B	638548309	638548931	622	True	896.000000	896	92.675000	286	908	1	chr1B.!!$R1	622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
607	614	0.031857	CTATGACTCCTGAGCCTGCG	59.968	60.0	0.0	0.0	0.00	5.18	F
1668	1695	0.978146	ACCGAGCCACTTCCTATGCT	60.978	55.0	0.0	0.0	36.62	3.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1699	1726	1.067142	TCTGGTACCTGCTTTAGTGCG	60.067	52.381	14.36	0.0	35.36	5.34	R
2701	2806	2.355513	GGTCAGTGAGCAGTTGGATGAT	60.356	50.000	17.32	0.0	0.00	2.45	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	5.593010	GGACTCGAGAGTGCTAAAATATGT	58.407	41.667	21.68	0.00	44.92	2.29
127	128	9.297586	TCATATTTAGTTGTTAGCTAACTGACG	57.702	33.333	31.14	16.81	38.70	4.35
128	129	9.084164	CATATTTAGTTGTTAGCTAACTGACGT	57.916	33.333	31.14	20.69	38.70	4.34
130	131	7.858052	TTTAGTTGTTAGCTAACTGACGTAC	57.142	36.000	31.14	19.75	38.70	3.67
131	132	5.702349	AGTTGTTAGCTAACTGACGTACT	57.298	39.130	31.14	21.15	37.03	2.73
132	133	6.081872	AGTTGTTAGCTAACTGACGTACTT	57.918	37.500	31.14	14.22	37.03	2.24
133	134	5.919141	AGTTGTTAGCTAACTGACGTACTTG	59.081	40.000	31.14	0.00	37.03	3.16
134	135	5.443185	TGTTAGCTAACTGACGTACTTGT	57.557	39.130	31.14	0.00	35.21	3.16
135	136	5.455392	TGTTAGCTAACTGACGTACTTGTC	58.545	41.667	31.14	6.16	35.21	3.18
136	137	5.008911	TGTTAGCTAACTGACGTACTTGTCA	59.991	40.000	31.14	8.53	45.62	3.58
146	147	6.092955	TGACGTACTTGTCAATAGGAAAGT	57.907	37.500	1.57	0.00	45.40	2.66
147	148	7.218228	TGACGTACTTGTCAATAGGAAAGTA	57.782	36.000	1.57	0.00	45.40	2.24
148	149	7.086376	TGACGTACTTGTCAATAGGAAAGTAC	58.914	38.462	12.38	12.38	45.40	2.73
149	150	7.040201	TGACGTACTTGTCAATAGGAAAGTACT	60.040	37.037	17.59	0.00	46.61	2.73
150	151	8.340618	ACGTACTTGTCAATAGGAAAGTACTA	57.659	34.615	17.59	0.00	46.61	1.82
218	219	4.747583	TGCTAGCTATACCAATGGACCTA	58.252	43.478	17.23	0.00	0.00	3.08
297	298	5.588246	GTCAACAACAACCCCAAAATGAAAT	59.412	36.000	0.00	0.00	0.00	2.17
334	336	0.813184	CCATGCTCGTGCTGGAAATT	59.187	50.000	17.55	0.00	38.72	1.82
398	403	4.027572	TGCGTTCTTGTTCTTTCTTTGG	57.972	40.909	0.00	0.00	0.00	3.28
416	421	3.060479	TGGCATAGAGGACCAGGTAAT	57.940	47.619	0.00	0.00	0.00	1.89
417	422	2.705658	TGGCATAGAGGACCAGGTAATG	59.294	50.000	0.00	0.00	0.00	1.90
456	461	5.311913	TGTTCATATGGGCCATCCTATGTTA	59.688	40.000	25.07	10.97	35.05	2.41
489	496	9.702494	TGACAATAAACAATATTTGCACATTCA	57.298	25.926	0.00	0.00	0.00	2.57
505	512	5.116074	GCACATTCATCTTATTAATGCGTGC	59.884	40.000	0.00	0.00	37.35	5.34
564	571	8.566260	GCATATGAGAGATAATTTGTTGCTTCT	58.434	33.333	6.97	0.00	0.00	2.85
578	585	0.170561	GCTTCTGGAAGTCGACGCTA	59.829	55.000	10.46	3.64	40.45	4.26
607	614	0.031857	CTATGACTCCTGAGCCTGCG	59.968	60.000	0.00	0.00	0.00	5.18
691	700	1.882912	TTGCGGATGAGATGTATGCC	58.117	50.000	0.00	0.00	0.00	4.40
700	709	2.885266	TGAGATGTATGCCGAGTACCTC	59.115	50.000	0.00	0.00	0.00	3.85
797	810	1.078497	TAGCTTGGTGATGGTGCCG	60.078	57.895	0.00	0.00	0.00	5.69
799	812	2.981560	GCTTGGTGATGGTGCCGTG	61.982	63.158	0.00	0.00	0.00	4.94
832	846	1.536940	CATGTTGGCTGTGATGGTGA	58.463	50.000	0.00	0.00	0.00	4.02
836	850	1.537202	GTTGGCTGTGATGGTGACTTC	59.463	52.381	0.00	0.00	35.18	3.01
939	953	8.976986	ATGTTTTACCTTACTCGTACTTGTAG	57.023	34.615	0.00	0.00	0.00	2.74
940	954	8.165239	TGTTTTACCTTACTCGTACTTGTAGA	57.835	34.615	0.00	0.00	0.00	2.59
942	956	9.463443	GTTTTACCTTACTCGTACTTGTAGAAA	57.537	33.333	0.00	0.00	0.00	2.52
962	976	9.262472	GTAGAAATGTTCTTACTTTTATGCACG	57.738	33.333	0.00	0.00	41.14	5.34
981	995	8.614994	ATGCACGTTCATTTATTTTACTTAGC	57.385	30.769	0.00	0.00	0.00	3.09
982	996	7.812648	TGCACGTTCATTTATTTTACTTAGCT	58.187	30.769	0.00	0.00	0.00	3.32
983	997	8.293867	TGCACGTTCATTTATTTTACTTAGCTT	58.706	29.630	0.00	0.00	0.00	3.74
1039	1060	5.652891	AGTAGAGTGTACCTTACATGGACTG	59.347	44.000	0.00	0.00	41.34	3.51
1067	1088	1.599419	GGACACGACATTGTTGGTTGC	60.599	52.381	8.87	0.00	0.00	4.17
1262	1283	1.074405	TGCTCAGAGTGGCTTTGGATT	59.926	47.619	0.00	0.00	0.00	3.01
1367	1388	5.957910	TTGTGGTTATTTTTGCAACTTCG	57.042	34.783	0.00	0.00	0.00	3.79
1378	1403	7.615582	TTTTTGCAACTTCGATATCATCTCT	57.384	32.000	0.00	0.00	0.00	3.10
1417	1443	2.701423	TGTAGGCTAACAAGGACACACA	59.299	45.455	0.00	0.00	0.00	3.72
1430	1456	3.780294	AGGACACACATGCCTATAGGAAA	59.220	43.478	23.61	9.97	37.39	3.13
1535	1561	4.439974	GCATGTGTTCAAGAACCACAAGAA	60.440	41.667	16.31	0.00	40.46	2.52
1578	1604	3.256281	GAGGTGCCTCAAAAGAGGG	57.744	57.895	13.00	0.00	42.50	4.30
1668	1695	0.978146	ACCGAGCCACTTCCTATGCT	60.978	55.000	0.00	0.00	36.62	3.79
1699	1726	1.821136	CCTCCAACAGAAATCCTTGCC	59.179	52.381	0.00	0.00	0.00	4.52
1709	1736	0.811281	AATCCTTGCCGCACTAAAGC	59.189	50.000	0.00	0.00	0.00	3.51
1756	1783	2.315925	TGCCGAGAGCTTATGGAAAG	57.684	50.000	3.49	0.00	44.23	2.62
1823	1850	1.566231	AGGAGTTAAGGAAGCCATGGG	59.434	52.381	15.13	0.00	0.00	4.00
2011	2085	8.984764	CATGCTTCCATGTTCCATATTAATTTG	58.015	33.333	0.00	0.00	43.07	2.32
2231	2334	4.901197	TTAAGTGCTACCCTGTGATTCA	57.099	40.909	0.00	0.00	0.00	2.57
2438	2542	9.911788	AGTGAATACATGAATTCCTCAAACTAT	57.088	29.630	0.00	0.00	37.67	2.12
2440	2544	9.123902	TGAATACATGAATTCCTCAAACTATGG	57.876	33.333	0.00	0.00	37.67	2.74
2538	2643	2.093783	GCAAGGTCGGATCTAAAACACG	59.906	50.000	0.00	0.00	0.00	4.49
2733	2838	0.684479	TCACTGACCAGCGAGCCTAT	60.684	55.000	0.00	0.00	0.00	2.57
2826	2931	1.488393	CAAAGATCCCCCTCTCTGGAC	59.512	57.143	0.00	0.00	38.35	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	1.999071	GCACTCTCGAGTCCGATGCT	61.999	60.000	13.13	0.00	44.62	3.79
29	30	7.145323	TGCATCTTCGTAATCGATTCTCATAA	58.855	34.615	15.25	2.93	45.65	1.90
44	45	3.818210	TGGTACAACAAATGCATCTTCGT	59.182	39.130	0.00	0.00	31.92	3.85
124	125	7.311408	AGTACTTTCCTATTGACAAGTACGTC	58.689	38.462	12.91	0.00	43.32	4.34
125	126	7.224522	AGTACTTTCCTATTGACAAGTACGT	57.775	36.000	12.91	0.00	43.32	3.57
129	130	9.203163	AGCTATAGTACTTTCCTATTGACAAGT	57.797	33.333	0.00	0.00	32.65	3.16
200	201	6.789959	AGAAATCTAGGTCCATTGGTATAGCT	59.210	38.462	1.86	1.30	0.00	3.32
218	219	7.513436	AGTGGATCTGAATGGAGATAGAAATCT	59.487	37.037	0.00	0.00	45.46	2.40
297	298	4.368315	CATGGCGCAGTTATACAACTCTA	58.632	43.478	10.83	0.00	43.30	2.43
328	330	5.791336	AAGGTTCTCTCCACAAAATTTCC	57.209	39.130	0.00	0.00	0.00	3.13
334	336	2.091885	AGCCAAAGGTTCTCTCCACAAA	60.092	45.455	0.00	0.00	0.00	2.83
370	375	2.851195	AGAACAAGAACGCAAGATGGT	58.149	42.857	0.00	0.00	43.62	3.55
398	403	2.104792	TGCATTACCTGGTCCTCTATGC	59.895	50.000	0.63	12.25	37.87	3.14
416	421	4.868314	TGAACAATCAAATGGACATGCA	57.132	36.364	0.00	0.00	30.99	3.96
417	422	6.422701	CCATATGAACAATCAAATGGACATGC	59.577	38.462	3.65	0.00	39.49	4.06
484	491	6.358822	CACAGCACGCATTAATAAGATGAATG	59.641	38.462	0.00	0.00	34.37	2.67
489	496	4.635765	ACACACAGCACGCATTAATAAGAT	59.364	37.500	0.00	0.00	0.00	2.40
564	571	1.400846	CTAGCTTAGCGTCGACTTCCA	59.599	52.381	14.70	0.00	0.00	3.53
607	614	7.066284	ACACTTGTAATGAAAGTAGCATCATCC	59.934	37.037	0.00	0.00	35.70	3.51
700	709	1.148157	CTAGTTCTCCATGCGCCACG	61.148	60.000	4.18	0.00	0.00	4.94
774	785	2.357009	GCACCATCACCAAGCTAGAATG	59.643	50.000	0.00	0.00	0.00	2.67
775	786	2.648059	GCACCATCACCAAGCTAGAAT	58.352	47.619	0.00	0.00	0.00	2.40
777	788	0.253044	GGCACCATCACCAAGCTAGA	59.747	55.000	0.00	0.00	0.00	2.43
797	810	3.708563	ACATGCTACCACACAAAACAC	57.291	42.857	0.00	0.00	0.00	3.32
799	812	3.380142	CCAACATGCTACCACACAAAAC	58.620	45.455	0.00	0.00	0.00	2.43
832	846	7.824289	AGCATGTACAACATATAACACAGAAGT	59.176	33.333	0.00	0.00	36.53	3.01
836	850	7.973601	TGAAGCATGTACAACATATAACACAG	58.026	34.615	0.00	0.00	36.53	3.66
937	951	8.995220	ACGTGCATAAAAGTAAGAACATTTCTA	58.005	29.630	0.00	0.00	39.61	2.10
938	952	7.871853	ACGTGCATAAAAGTAAGAACATTTCT	58.128	30.769	0.00	0.00	43.15	2.52
939	953	8.502161	AACGTGCATAAAAGTAAGAACATTTC	57.498	30.769	0.00	0.00	29.84	2.17
940	954	8.132362	TGAACGTGCATAAAAGTAAGAACATTT	58.868	29.630	0.00	0.00	31.82	2.32
942	956	7.197071	TGAACGTGCATAAAAGTAAGAACAT	57.803	32.000	0.00	0.00	0.00	2.71
981	995	5.112220	TGTTTCAAGCATGCTTCTACAAG	57.888	39.130	29.81	17.36	33.42	3.16
982	996	5.512753	TTGTTTCAAGCATGCTTCTACAA	57.487	34.783	29.38	29.38	33.42	2.41
983	997	5.512753	TTTGTTTCAAGCATGCTTCTACA	57.487	34.783	29.81	26.36	33.42	2.74
1023	1040	3.447586	TCTCAGCAGTCCATGTAAGGTAC	59.552	47.826	0.00	0.00	0.00	3.34
1039	1060	1.662629	CAATGTCGTGTCCATCTCAGC	59.337	52.381	0.00	0.00	0.00	4.26
1067	1088	2.712057	GTTGTGATGCTCAACAAGGG	57.288	50.000	7.30	0.00	42.94	3.95
1262	1283	4.085733	CACCATGTTCTTTACCCAATCCA	58.914	43.478	0.00	0.00	0.00	3.41
1378	1403	8.172352	AGCCTACACAAAACACACAAATATTA	57.828	30.769	0.00	0.00	0.00	0.98
1417	1443	5.132816	AGCACTACCTTTTTCCTATAGGCAT	59.867	40.000	14.50	0.00	34.44	4.40
1430	1456	3.074538	ACTCCCAATTGAGCACTACCTTT	59.925	43.478	7.12	0.00	35.72	3.11
1637	1664	1.134220	TGGCTCGGTTGTCTTCAAAGT	60.134	47.619	0.00	0.00	35.20	2.66
1699	1726	1.067142	TCTGGTACCTGCTTTAGTGCG	60.067	52.381	14.36	0.00	35.36	5.34
1709	1736	4.656112	ACTATCCTCCAAATCTGGTACCTG	59.344	45.833	14.36	13.33	43.97	4.00
1756	1783	3.155998	CAAACGCTCATTGACGATCAAC	58.844	45.455	13.15	0.00	39.45	3.18
1823	1850	5.551760	AACAATCAATCGATGGTCAAGAC	57.448	39.130	0.00	0.00	34.47	3.01
2184	2287	4.685628	CCAATTGCTGTTTGGATGTACAAC	59.314	41.667	0.00	0.00	45.35	3.32
2538	2643	8.567948	ACCGTTTGTGAATTCATCATTATATCC	58.432	33.333	12.12	0.00	40.97	2.59
2701	2806	2.355513	GGTCAGTGAGCAGTTGGATGAT	60.356	50.000	17.32	0.00	0.00	2.45
2733	2838	3.278574	CCGGCAATGAGTAAATCCTTCA	58.721	45.455	0.00	0.00	0.00	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.