Multiple sequence alignment - TraesCS3A01G318900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G318900 chr3A 100.000 2446 0 0 1 2446 561056342 561053897 0.000000e+00 4518.0
1 TraesCS3A01G318900 chr3D 87.802 1902 90 65 224 2045 426923915 426925754 0.000000e+00 2097.0
2 TraesCS3A01G318900 chr3D 84.314 204 11 5 2027 2223 426925768 426925957 1.930000e-41 180.0
3 TraesCS3A01G318900 chr3D 94.286 35 2 0 2247 2281 426925964 426925998 1.000000e-03 54.7
4 TraesCS3A01G318900 chr3B 80.979 1267 95 67 58 1231 556634240 556635453 0.000000e+00 870.0
5 TraesCS3A01G318900 chr3B 87.023 262 15 4 1965 2215 556641328 556641581 6.660000e-71 278.0
6 TraesCS3A01G318900 chr3B 87.349 166 8 6 1764 1916 556641167 556641332 6.950000e-41 178.0
7 TraesCS3A01G318900 chr3B 91.011 89 8 0 1372 1460 556640920 556641008 1.190000e-23 121.0
8 TraesCS3A01G318900 chr5D 81.928 83 12 2 1182 1261 502874367 502874449 1.570000e-07 67.6
9 TraesCS3A01G318900 chr5B 81.928 83 12 2 1182 1261 631786769 631786851 1.570000e-07 67.6
10 TraesCS3A01G318900 chr5A 81.928 83 12 1 1182 1261 631463928 631464010 1.570000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G318900 chr3A 561053897 561056342 2445 True 4518.000000 4518 100.000000 1 2446 1 chr3A.!!$R1 2445
1 TraesCS3A01G318900 chr3D 426923915 426925998 2083 False 777.233333 2097 88.800667 224 2281 3 chr3D.!!$F1 2057
2 TraesCS3A01G318900 chr3B 556634240 556635453 1213 False 870.000000 870 80.979000 58 1231 1 chr3B.!!$F1 1173

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 353 0.319986 TGGTTGCTACGAATCGTGCA 60.32 50.0 19.42 20.94 41.39 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 2288 0.032952 CAACCGGAGAGACGAAACCA 59.967 55.0 9.46 0.0 35.47 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.093291 AGAGAGCAGGCAAGCCGG 62.093 66.667 6.88 6.88 41.95 6.13
18 19 4.087892 GAGAGCAGGCAAGCCGGA 62.088 66.667 15.46 0.00 41.95 5.14
19 20 3.397613 GAGAGCAGGCAAGCCGGAT 62.398 63.158 15.46 8.74 41.95 4.18
20 21 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
21 22 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
22 23 4.496336 GCAGGCAAGCCGGATCCT 62.496 66.667 15.46 0.00 41.95 3.24
23 24 2.515523 CAGGCAAGCCGGATCCTG 60.516 66.667 12.55 12.55 41.95 3.86
24 25 2.688666 AGGCAAGCCGGATCCTGA 60.689 61.111 5.05 0.00 41.95 3.86
25 26 2.272146 GGCAAGCCGGATCCTGAA 59.728 61.111 5.05 0.00 0.00 3.02
26 27 1.821332 GGCAAGCCGGATCCTGAAG 60.821 63.158 5.05 0.00 0.00 3.02
27 28 2.476320 GCAAGCCGGATCCTGAAGC 61.476 63.158 5.05 7.47 0.00 3.86
28 29 1.821332 CAAGCCGGATCCTGAAGCC 60.821 63.158 5.05 0.00 0.00 4.35
29 30 2.300967 AAGCCGGATCCTGAAGCCA 61.301 57.895 5.05 0.00 0.00 4.75
30 31 2.514824 GCCGGATCCTGAAGCCAC 60.515 66.667 5.05 0.00 0.00 5.01
31 32 2.989639 CCGGATCCTGAAGCCACA 59.010 61.111 10.75 0.00 0.00 4.17
32 33 1.450312 CCGGATCCTGAAGCCACAC 60.450 63.158 10.75 0.00 0.00 3.82
33 34 1.296392 CGGATCCTGAAGCCACACA 59.704 57.895 10.75 0.00 0.00 3.72
34 35 0.321564 CGGATCCTGAAGCCACACAA 60.322 55.000 10.75 0.00 0.00 3.33
35 36 1.679944 CGGATCCTGAAGCCACACAAT 60.680 52.381 10.75 0.00 0.00 2.71
36 37 1.747355 GGATCCTGAAGCCACACAATG 59.253 52.381 3.84 0.00 0.00 2.82
37 38 2.618816 GGATCCTGAAGCCACACAATGA 60.619 50.000 3.84 0.00 0.00 2.57
38 39 2.885135 TCCTGAAGCCACACAATGAT 57.115 45.000 0.00 0.00 0.00 2.45
39 40 2.439409 TCCTGAAGCCACACAATGATG 58.561 47.619 0.00 0.00 0.00 3.07
40 41 2.165167 CCTGAAGCCACACAATGATGT 58.835 47.619 0.00 0.00 41.61 3.06
41 42 2.163010 CCTGAAGCCACACAATGATGTC 59.837 50.000 0.00 0.00 37.82 3.06
42 43 1.805943 TGAAGCCACACAATGATGTCG 59.194 47.619 0.00 0.00 37.82 4.35
43 44 2.076100 GAAGCCACACAATGATGTCGA 58.924 47.619 0.00 0.00 37.82 4.20
44 45 2.408271 AGCCACACAATGATGTCGAT 57.592 45.000 0.00 0.00 37.82 3.59
45 46 2.011947 AGCCACACAATGATGTCGATG 58.988 47.619 0.00 0.00 37.82 3.84
46 47 1.739466 GCCACACAATGATGTCGATGT 59.261 47.619 0.00 0.00 37.82 3.06
47 48 2.223112 GCCACACAATGATGTCGATGTC 60.223 50.000 0.00 0.00 37.82 3.06
48 49 3.264947 CCACACAATGATGTCGATGTCT 58.735 45.455 0.00 0.00 37.82 3.41
49 50 3.308053 CCACACAATGATGTCGATGTCTC 59.692 47.826 0.00 0.00 37.82 3.36
50 51 3.000376 CACACAATGATGTCGATGTCTCG 60.000 47.826 0.00 0.00 46.41 4.04
51 52 2.537214 CACAATGATGTCGATGTCTCGG 59.463 50.000 0.00 0.00 45.10 4.63
52 53 2.427095 ACAATGATGTCGATGTCTCGGA 59.573 45.455 0.00 0.00 45.10 4.55
53 54 3.119137 ACAATGATGTCGATGTCTCGGAA 60.119 43.478 0.00 0.00 45.10 4.30
54 55 3.801114 ATGATGTCGATGTCTCGGAAA 57.199 42.857 0.00 0.00 45.10 3.13
55 56 3.801114 TGATGTCGATGTCTCGGAAAT 57.199 42.857 0.00 0.00 45.10 2.17
56 57 3.706698 TGATGTCGATGTCTCGGAAATC 58.293 45.455 0.00 0.00 45.10 2.17
72 73 4.332819 CGGAAATCTGTCAGGTACATTTCC 59.667 45.833 22.52 22.52 45.63 3.13
80 81 4.768448 TGTCAGGTACATTTCCTACGAAGA 59.232 41.667 0.00 0.00 33.54 2.87
86 87 5.163437 GGTACATTTCCTACGAAGAGATGGT 60.163 44.000 0.00 0.00 0.00 3.55
89 90 5.657302 ACATTTCCTACGAAGAGATGGTAGT 59.343 40.000 0.00 0.00 38.33 2.73
94 95 2.915349 ACGAAGAGATGGTAGTCGCTA 58.085 47.619 0.00 0.00 35.15 4.26
99 100 4.373348 AGAGATGGTAGTCGCTACAAAC 57.627 45.455 15.62 6.49 38.58 2.93
114 115 3.469863 AAACCTGCGTTCCTGCCGA 62.470 57.895 0.00 0.00 0.00 5.54
116 117 2.436646 CCTGCGTTCCTGCCGATT 60.437 61.111 0.00 0.00 0.00 3.34
124 125 2.745281 CGTTCCTGCCGATTTTCCTTTA 59.255 45.455 0.00 0.00 0.00 1.85
129 130 4.830600 TCCTGCCGATTTTCCTTTAGTTTT 59.169 37.500 0.00 0.00 0.00 2.43
142 143 5.596772 TCCTTTAGTTTTTCCTCAAAGGTGG 59.403 40.000 10.33 0.00 43.68 4.61
147 148 3.426787 TTTTCCTCAAAGGTGGCGATA 57.573 42.857 0.00 0.00 36.53 2.92
148 149 3.644966 TTTCCTCAAAGGTGGCGATAT 57.355 42.857 0.00 0.00 36.53 1.63
151 152 1.543429 CCTCAAAGGTGGCGATATCCC 60.543 57.143 0.00 0.29 0.00 3.85
152 153 0.472471 TCAAAGGTGGCGATATCCCC 59.528 55.000 0.00 0.00 0.00 4.81
171 176 4.019321 TCCCCTACAGTTTCTGAATTCTGG 60.019 45.833 19.54 3.05 35.18 3.86
176 181 3.319122 ACAGTTTCTGAATTCTGGCAACC 59.681 43.478 19.54 0.00 35.18 3.77
177 182 3.571401 CAGTTTCTGAATTCTGGCAACCT 59.429 43.478 11.89 0.00 32.44 3.50
178 183 3.571401 AGTTTCTGAATTCTGGCAACCTG 59.429 43.478 11.89 0.00 0.00 4.00
179 184 1.538047 TCTGAATTCTGGCAACCTGC 58.462 50.000 11.89 0.00 44.08 4.85
215 220 3.805207 ACGGTTATCTGAACCCTTATGC 58.195 45.455 0.97 0.00 36.99 3.14
217 222 4.080526 ACGGTTATCTGAACCCTTATGCTT 60.081 41.667 0.97 0.00 36.99 3.91
218 223 5.129815 ACGGTTATCTGAACCCTTATGCTTA 59.870 40.000 0.97 0.00 36.99 3.09
220 225 5.998363 GGTTATCTGAACCCTTATGCTTAGG 59.002 44.000 0.00 0.00 34.26 2.69
222 227 5.717119 ATCTGAACCCTTATGCTTAGGTT 57.283 39.130 3.71 3.71 45.18 3.50
227 250 3.606687 ACCCTTATGCTTAGGTTTCACG 58.393 45.455 0.00 0.00 0.00 4.35
231 254 4.142687 CCTTATGCTTAGGTTTCACGGTTG 60.143 45.833 0.00 0.00 0.00 3.77
301 329 3.056465 ACAGAAAACTCTAGAGAAGGGCG 60.056 47.826 26.57 12.06 0.00 6.13
323 352 0.370273 CTGGTTGCTACGAATCGTGC 59.630 55.000 19.42 18.73 41.39 5.34
324 353 0.319986 TGGTTGCTACGAATCGTGCA 60.320 50.000 19.42 20.94 41.39 4.57
339 373 5.949233 ATCGTGCAAAAGAAACAAAGAAC 57.051 34.783 0.00 0.00 0.00 3.01
349 383 4.985538 AGAAACAAAGAACCCAGCATCTA 58.014 39.130 0.00 0.00 0.00 1.98
351 385 3.073274 ACAAAGAACCCAGCATCTACC 57.927 47.619 0.00 0.00 0.00 3.18
353 387 1.972588 AAGAACCCAGCATCTACCCT 58.027 50.000 0.00 0.00 0.00 4.34
354 388 1.972588 AGAACCCAGCATCTACCCTT 58.027 50.000 0.00 0.00 0.00 3.95
355 389 1.561542 AGAACCCAGCATCTACCCTTG 59.438 52.381 0.00 0.00 0.00 3.61
356 390 1.559682 GAACCCAGCATCTACCCTTGA 59.440 52.381 0.00 0.00 0.00 3.02
361 395 2.158900 CCAGCATCTACCCTTGAATCGT 60.159 50.000 0.00 0.00 0.00 3.73
362 396 3.126831 CAGCATCTACCCTTGAATCGTC 58.873 50.000 0.00 0.00 0.00 4.20
363 397 2.128035 GCATCTACCCTTGAATCGTCG 58.872 52.381 0.00 0.00 0.00 5.12
365 399 3.372954 CATCTACCCTTGAATCGTCGAC 58.627 50.000 5.18 5.18 0.00 4.20
366 400 1.747355 TCTACCCTTGAATCGTCGACC 59.253 52.381 10.58 0.00 0.00 4.79
367 401 0.452987 TACCCTTGAATCGTCGACCG 59.547 55.000 10.58 5.50 38.13 4.79
377 411 2.188837 TCGTCGACCGATTTCTGATG 57.811 50.000 10.58 0.00 41.60 3.07
378 412 1.741145 TCGTCGACCGATTTCTGATGA 59.259 47.619 10.58 0.00 41.60 2.92
380 414 3.116300 CGTCGACCGATTTCTGATGATT 58.884 45.455 10.58 0.00 39.56 2.57
381 415 3.551890 CGTCGACCGATTTCTGATGATTT 59.448 43.478 10.58 0.00 39.56 2.17
383 417 5.231357 CGTCGACCGATTTCTGATGATTTAA 59.769 40.000 10.58 0.00 39.56 1.52
384 418 6.411652 GTCGACCGATTTCTGATGATTTAAC 58.588 40.000 3.51 0.00 0.00 2.01
385 419 5.522460 TCGACCGATTTCTGATGATTTAACC 59.478 40.000 0.00 0.00 0.00 2.85
386 420 5.556382 CGACCGATTTCTGATGATTTAACCG 60.556 44.000 0.00 0.00 0.00 4.44
387 421 4.574828 ACCGATTTCTGATGATTTAACCGG 59.425 41.667 0.00 0.00 38.16 5.28
388 422 4.814234 CCGATTTCTGATGATTTAACCGGA 59.186 41.667 9.46 0.00 34.59 5.14
390 424 5.277345 CGATTTCTGATGATTTAACCGGACC 60.277 44.000 9.46 0.00 0.00 4.46
394 441 2.948979 TGATGATTTAACCGGACCATGC 59.051 45.455 9.46 0.00 0.00 4.06
412 459 1.298713 CATTCTCCTCGTCTCGCCG 60.299 63.158 0.00 0.00 0.00 6.46
438 485 0.385098 GTTGGCAACGTCGCTTTACC 60.385 55.000 15.49 0.00 42.51 2.85
447 494 1.135199 CGTCGCTTTACCTGCCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
478 539 1.003331 AGAAGAAGATCGTAGCTCGCG 60.003 52.381 0.00 0.00 39.67 5.87
506 568 2.555199 CAGAGGTTTAGATTCCCAGCG 58.445 52.381 0.00 0.00 0.00 5.18
507 569 2.093447 CAGAGGTTTAGATTCCCAGCGT 60.093 50.000 0.00 0.00 0.00 5.07
508 570 2.168728 AGAGGTTTAGATTCCCAGCGTC 59.831 50.000 0.00 0.00 0.00 5.19
509 571 2.168728 GAGGTTTAGATTCCCAGCGTCT 59.831 50.000 0.00 0.00 0.00 4.18
510 572 2.572104 AGGTTTAGATTCCCAGCGTCTT 59.428 45.455 0.00 0.00 0.00 3.01
512 574 3.127030 GGTTTAGATTCCCAGCGTCTTTG 59.873 47.826 0.00 0.00 0.00 2.77
515 589 0.804989 GATTCCCAGCGTCTTTGGTG 59.195 55.000 0.00 0.00 37.11 4.17
592 667 4.070009 TCGATCCTAGCGCTTGTTAGATA 58.930 43.478 18.68 0.00 0.00 1.98
637 717 3.513119 ACAGCAAGCAGAGATAGAGTTCA 59.487 43.478 0.00 0.00 0.00 3.18
647 727 7.013750 AGCAGAGATAGAGTTCAATCGTATGAA 59.986 37.037 2.29 2.29 36.99 2.57
655 735 8.249327 AGAGTTCAATCGTATGAATATGATGC 57.751 34.615 5.92 0.00 41.09 3.91
836 929 0.519175 CGCCGAATGTTTCAGAAGCG 60.519 55.000 0.00 0.00 36.06 4.68
876 971 4.024048 CCACGGCAAAAATATACTAGCAGG 60.024 45.833 0.00 0.00 0.00 4.85
879 974 3.888930 GGCAAAAATATACTAGCAGGCCA 59.111 43.478 5.01 0.00 37.62 5.36
914 1009 3.040147 TGCAGCCGCTATTTATACTCC 57.960 47.619 0.00 0.00 39.64 3.85
918 1013 3.511934 CAGCCGCTATTTATACTCCCTCT 59.488 47.826 0.00 0.00 0.00 3.69
922 1017 5.262804 CCGCTATTTATACTCCCTCTAGGT 58.737 45.833 0.00 0.00 36.75 3.08
926 1021 6.378848 GCTATTTATACTCCCTCTAGGTCCAG 59.621 46.154 0.00 0.00 36.75 3.86
946 1041 4.760047 CCGGCCGGTCCACTTCTG 62.760 72.222 36.64 6.12 34.01 3.02
948 1043 4.021925 GGCCGGTCCACTTCTGCT 62.022 66.667 1.90 0.00 34.01 4.24
949 1044 2.656069 GGCCGGTCCACTTCTGCTA 61.656 63.158 1.90 0.00 34.01 3.49
950 1045 1.153549 GCCGGTCCACTTCTGCTAG 60.154 63.158 1.90 0.00 0.00 3.42
951 1046 1.153549 CCGGTCCACTTCTGCTAGC 60.154 63.158 8.10 8.10 0.00 3.42
1071 1199 3.057526 CCCACGCATGATAGATAGACGAA 60.058 47.826 0.00 0.00 0.00 3.85
1075 1209 7.255139 CCCACGCATGATAGATAGACGAATATA 60.255 40.741 0.00 0.00 0.00 0.86
1103 1237 3.996363 GTGTTTCTTGCATTCCATTTCCC 59.004 43.478 0.00 0.00 0.00 3.97
1108 1242 5.151297 TCTTGCATTCCATTTCCCTTTTC 57.849 39.130 0.00 0.00 0.00 2.29
1264 1403 5.012768 GGGATTCCTCGAAGGATGGTAATAA 59.987 44.000 2.01 0.00 45.34 1.40
1272 1411 7.041984 CCTCGAAGGATGGTAATAAAAAGCTAC 60.042 40.741 0.00 0.00 37.67 3.58
1354 1499 3.047718 CTCTGTGCTTGCATGCCCG 62.048 63.158 20.65 7.12 0.00 6.13
1355 1500 4.789075 CTGTGCTTGCATGCCCGC 62.789 66.667 20.65 17.61 0.00 6.13
1370 1517 1.632422 CCCGCAAACTACGTACGAAT 58.368 50.000 24.41 2.35 0.00 3.34
1461 1608 0.290840 CTGATCGAAACACGTACGCG 59.709 55.000 16.72 8.78 43.13 6.01
1462 1609 1.066656 TGATCGAAACACGTACGCGG 61.067 55.000 16.72 10.71 43.45 6.46
1640 1787 1.710816 CCCCTAGAGGCCTAGAACAG 58.289 60.000 4.42 0.00 44.00 3.16
1719 1866 4.980805 CGACGGGTGGGTGGTGTG 62.981 72.222 0.00 0.00 0.00 3.82
1723 1870 2.277404 GGGTGGGTGGTGTGTGTT 59.723 61.111 0.00 0.00 0.00 3.32
1724 1871 2.124693 GGGTGGGTGGTGTGTGTTG 61.125 63.158 0.00 0.00 0.00 3.33
1725 1872 2.781158 GGTGGGTGGTGTGTGTTGC 61.781 63.158 0.00 0.00 0.00 4.17
1726 1873 2.049185 GTGGGTGGTGTGTGTTGCA 61.049 57.895 0.00 0.00 0.00 4.08
1727 1874 1.076412 TGGGTGGTGTGTGTTGCAT 60.076 52.632 0.00 0.00 0.00 3.96
1728 1875 1.363443 GGGTGGTGTGTGTTGCATG 59.637 57.895 0.00 0.00 0.00 4.06
1729 1876 1.391157 GGGTGGTGTGTGTTGCATGT 61.391 55.000 0.00 0.00 0.00 3.21
1730 1877 1.313772 GGTGGTGTGTGTTGCATGTA 58.686 50.000 0.00 0.00 0.00 2.29
1731 1878 1.885887 GGTGGTGTGTGTTGCATGTAT 59.114 47.619 0.00 0.00 0.00 2.29
1732 1879 2.351641 GGTGGTGTGTGTTGCATGTATG 60.352 50.000 0.00 0.00 0.00 2.39
1733 1880 2.293122 GTGGTGTGTGTTGCATGTATGT 59.707 45.455 0.00 0.00 0.00 2.29
1734 1881 3.500299 GTGGTGTGTGTTGCATGTATGTA 59.500 43.478 0.00 0.00 0.00 2.29
1735 1882 4.155826 GTGGTGTGTGTTGCATGTATGTAT 59.844 41.667 0.00 0.00 0.00 2.29
1736 1883 4.155644 TGGTGTGTGTTGCATGTATGTATG 59.844 41.667 0.00 0.00 0.00 2.39
1737 1884 4.155826 GGTGTGTGTTGCATGTATGTATGT 59.844 41.667 0.00 0.00 0.00 2.29
1738 1885 5.352846 GGTGTGTGTTGCATGTATGTATGTA 59.647 40.000 0.00 0.00 0.00 2.29
1739 1886 6.038161 GGTGTGTGTTGCATGTATGTATGTAT 59.962 38.462 0.00 0.00 0.00 2.29
1740 1887 7.125755 GTGTGTGTTGCATGTATGTATGTATC 58.874 38.462 0.00 0.00 0.00 2.24
1741 1888 7.011389 GTGTGTGTTGCATGTATGTATGTATCT 59.989 37.037 0.00 0.00 0.00 1.98
1742 1889 7.011295 TGTGTGTTGCATGTATGTATGTATCTG 59.989 37.037 0.00 0.00 0.00 2.90
1743 1890 7.224557 GTGTGTTGCATGTATGTATGTATCTGA 59.775 37.037 0.00 0.00 0.00 3.27
1744 1891 7.933033 TGTGTTGCATGTATGTATGTATCTGAT 59.067 33.333 0.00 0.00 0.00 2.90
1745 1892 8.225777 GTGTTGCATGTATGTATGTATCTGATG 58.774 37.037 0.00 0.00 0.00 3.07
1746 1893 7.933033 TGTTGCATGTATGTATGTATCTGATGT 59.067 33.333 0.00 0.00 0.00 3.06
1747 1894 7.894376 TGCATGTATGTATGTATCTGATGTG 57.106 36.000 0.00 0.00 0.00 3.21
1748 1895 7.669427 TGCATGTATGTATGTATCTGATGTGA 58.331 34.615 0.00 0.00 0.00 3.58
1749 1896 8.316214 TGCATGTATGTATGTATCTGATGTGAT 58.684 33.333 0.00 0.00 0.00 3.06
1750 1897 8.815189 GCATGTATGTATGTATCTGATGTGATC 58.185 37.037 0.00 0.00 0.00 2.92
1751 1898 9.310716 CATGTATGTATGTATCTGATGTGATCC 57.689 37.037 0.00 0.00 0.00 3.36
1752 1899 7.840931 TGTATGTATGTATCTGATGTGATCCC 58.159 38.462 0.00 0.00 0.00 3.85
1753 1900 5.745312 TGTATGTATCTGATGTGATCCCC 57.255 43.478 0.00 0.00 0.00 4.81
1754 1901 5.406163 TGTATGTATCTGATGTGATCCCCT 58.594 41.667 0.00 0.00 0.00 4.79
1755 1902 6.561294 TGTATGTATCTGATGTGATCCCCTA 58.439 40.000 0.00 0.00 0.00 3.53
1756 1903 7.016296 TGTATGTATCTGATGTGATCCCCTAA 58.984 38.462 0.00 0.00 0.00 2.69
1757 1904 7.512402 TGTATGTATCTGATGTGATCCCCTAAA 59.488 37.037 0.00 0.00 0.00 1.85
1758 1905 6.823286 TGTATCTGATGTGATCCCCTAAAA 57.177 37.500 0.00 0.00 0.00 1.52
1759 1906 7.206789 TGTATCTGATGTGATCCCCTAAAAA 57.793 36.000 0.00 0.00 0.00 1.94
1788 1935 8.779303 AGTATCTGATGTGAGTCTACGAATAAG 58.221 37.037 0.00 0.00 0.00 1.73
1802 1952 9.367444 GTCTACGAATAAGATGAGGAAAAAGAA 57.633 33.333 0.00 0.00 0.00 2.52
1809 1959 9.899226 AATAAGATGAGGAAAAAGAAAAGTTCG 57.101 29.630 0.00 0.00 34.02 3.95
1917 2074 6.990939 GGTAAGGTAGAAAGTCAAAACTGAGT 59.009 38.462 0.00 0.00 35.36 3.41
1927 2084 1.872952 CAAAACTGAGTGCCATGACGA 59.127 47.619 0.00 0.00 0.00 4.20
1957 2114 1.153086 CGCCCCCTCCAGAGAATTG 60.153 63.158 0.00 0.00 0.00 2.32
1964 2121 2.420547 CCCTCCAGAGAATTGAATCGCA 60.421 50.000 0.00 0.00 0.00 5.10
1969 2126 2.672874 CAGAGAATTGAATCGCACCGAA 59.327 45.455 0.00 0.00 39.99 4.30
1971 2128 2.415168 GAGAATTGAATCGCACCGAACA 59.585 45.455 0.00 0.00 39.99 3.18
1996 2153 1.939934 CAAACAGAGTGAAGCGGAACA 59.060 47.619 0.00 0.00 0.00 3.18
1998 2155 3.678056 AACAGAGTGAAGCGGAACATA 57.322 42.857 0.00 0.00 0.00 2.29
2019 2176 0.326264 AGGAAGCGAAGAGGCACATT 59.674 50.000 0.00 0.00 34.64 2.71
2025 2182 0.443869 CGAAGAGGCACATTGGTTCG 59.556 55.000 0.00 0.00 0.00 3.95
2045 2202 3.383505 TCGAACAAGAACCTGAAGAGACA 59.616 43.478 0.00 0.00 0.00 3.41
2046 2203 3.738282 CGAACAAGAACCTGAAGAGACAG 59.262 47.826 0.00 0.00 37.61 3.51
2088 2283 2.758089 GCGCAATCTGTGGCAGGAG 61.758 63.158 0.30 0.00 31.51 3.69
2089 2284 2.758089 CGCAATCTGTGGCAGGAGC 61.758 63.158 0.00 0.00 41.10 4.70
2099 2294 3.502572 GCAGGAGCCGATGGTTTC 58.497 61.111 0.00 0.00 33.58 2.78
2101 2296 1.079127 CAGGAGCCGATGGTTTCGT 60.079 57.895 0.00 0.00 46.65 3.85
2102 2297 1.084370 CAGGAGCCGATGGTTTCGTC 61.084 60.000 0.00 0.00 46.65 4.20
2103 2298 1.218316 GGAGCCGATGGTTTCGTCT 59.782 57.895 0.00 0.00 46.65 4.18
2104 2299 2.666989 GAGCCGATGGTTTCGTCTC 58.333 57.895 0.00 0.00 44.49 3.36
2105 2300 0.173708 GAGCCGATGGTTTCGTCTCT 59.826 55.000 0.00 0.00 46.54 3.10
2106 2301 0.173708 AGCCGATGGTTTCGTCTCTC 59.826 55.000 0.00 0.00 46.65 3.20
2107 2302 0.806492 GCCGATGGTTTCGTCTCTCC 60.806 60.000 0.00 0.00 46.65 3.71
2108 2303 0.525668 CCGATGGTTTCGTCTCTCCG 60.526 60.000 0.00 0.00 46.65 4.63
2148 2343 4.467084 GGAGGCGGAATCGGTGCA 62.467 66.667 0.00 0.00 36.79 4.57
2149 2344 2.892425 GAGGCGGAATCGGTGCAG 60.892 66.667 0.00 0.00 36.79 4.41
2197 2392 2.283173 GGCTGGGGGTGGACAAAG 60.283 66.667 0.00 0.00 0.00 2.77
2204 2399 1.682344 GGGTGGACAAAGGGCATCC 60.682 63.158 0.00 0.00 0.00 3.51
2217 2412 1.522580 GCATCCTGCCCGTCTTCTC 60.523 63.158 0.00 0.00 37.42 2.87
2219 2414 3.082579 ATCCTGCCCGTCTTCTCGC 62.083 63.158 0.00 0.00 0.00 5.03
2226 2421 4.470050 CGTCTTCTCGCGCGTTGC 62.470 66.667 30.98 13.63 41.47 4.17
2281 2476 1.639298 CCAGCAACCGCAAGAGCTAC 61.639 60.000 0.00 0.00 42.27 3.58
2282 2477 0.671781 CAGCAACCGCAAGAGCTACT 60.672 55.000 0.00 0.00 42.27 2.57
2283 2478 0.895530 AGCAACCGCAAGAGCTACTA 59.104 50.000 0.00 0.00 42.27 1.82
2284 2479 1.134965 AGCAACCGCAAGAGCTACTAG 60.135 52.381 0.00 0.00 42.27 2.57
2285 2480 1.281899 CAACCGCAAGAGCTACTAGC 58.718 55.000 0.00 0.00 42.84 3.42
2286 2481 0.175989 AACCGCAAGAGCTACTAGCC 59.824 55.000 4.32 0.00 43.77 3.93
2287 2482 1.068250 CCGCAAGAGCTACTAGCCC 59.932 63.158 4.32 0.00 43.77 5.19
2288 2483 1.068250 CGCAAGAGCTACTAGCCCC 59.932 63.158 4.32 0.00 43.77 5.80
2289 2484 1.068250 GCAAGAGCTACTAGCCCCG 59.932 63.158 4.32 0.00 43.77 5.73
2290 2485 1.068250 CAAGAGCTACTAGCCCCGC 59.932 63.158 4.32 0.00 43.77 6.13
2291 2486 2.134933 AAGAGCTACTAGCCCCGCC 61.135 63.158 4.32 0.00 43.77 6.13
2292 2487 3.617735 GAGCTACTAGCCCCGCCC 61.618 72.222 4.32 0.00 43.77 6.13
2293 2488 4.475444 AGCTACTAGCCCCGCCCA 62.475 66.667 4.32 0.00 43.77 5.36
2294 2489 4.237207 GCTACTAGCCCCGCCCAC 62.237 72.222 0.00 0.00 34.48 4.61
2295 2490 3.912907 CTACTAGCCCCGCCCACG 61.913 72.222 0.00 0.00 39.67 4.94
2296 2491 4.445710 TACTAGCCCCGCCCACGA 62.446 66.667 0.00 0.00 43.93 4.35
2297 2492 3.961225 TACTAGCCCCGCCCACGAA 62.961 63.158 0.00 0.00 43.93 3.85
2298 2493 4.530857 CTAGCCCCGCCCACGAAG 62.531 72.222 0.00 0.00 43.93 3.79
2302 2497 4.016706 CCCCGCCCACGAAGTTCT 62.017 66.667 0.56 0.00 41.61 3.01
2303 2498 2.434359 CCCGCCCACGAAGTTCTC 60.434 66.667 0.56 0.00 41.61 2.87
2304 2499 2.342279 CCGCCCACGAAGTTCTCA 59.658 61.111 0.56 0.00 41.61 3.27
2305 2500 1.301401 CCGCCCACGAAGTTCTCAA 60.301 57.895 0.56 0.00 41.61 3.02
2306 2501 0.882927 CCGCCCACGAAGTTCTCAAA 60.883 55.000 0.56 0.00 41.61 2.69
2307 2502 0.512952 CGCCCACGAAGTTCTCAAAG 59.487 55.000 0.56 0.00 41.61 2.77
2308 2503 1.872237 CGCCCACGAAGTTCTCAAAGA 60.872 52.381 0.56 0.00 41.61 2.52
2309 2504 2.218603 GCCCACGAAGTTCTCAAAGAA 58.781 47.619 0.56 0.00 41.61 2.52
2320 2515 3.011949 TCTCAAAGAACAAAATGCGCC 57.988 42.857 4.18 0.00 0.00 6.53
2321 2516 2.061028 CTCAAAGAACAAAATGCGCCC 58.939 47.619 4.18 0.00 0.00 6.13
2322 2517 1.410517 TCAAAGAACAAAATGCGCCCA 59.589 42.857 4.18 0.00 0.00 5.36
2323 2518 2.036992 TCAAAGAACAAAATGCGCCCAT 59.963 40.909 4.18 0.00 0.00 4.00
2324 2519 2.083167 AAGAACAAAATGCGCCCATG 57.917 45.000 4.18 0.95 0.00 3.66
2325 2520 1.255882 AGAACAAAATGCGCCCATGA 58.744 45.000 4.18 0.00 0.00 3.07
2326 2521 1.617850 AGAACAAAATGCGCCCATGAA 59.382 42.857 4.18 0.00 0.00 2.57
2327 2522 1.726248 GAACAAAATGCGCCCATGAAC 59.274 47.619 4.18 0.00 0.00 3.18
2328 2523 0.678395 ACAAAATGCGCCCATGAACA 59.322 45.000 4.18 0.00 0.00 3.18
2329 2524 1.275856 ACAAAATGCGCCCATGAACAT 59.724 42.857 4.18 0.00 0.00 2.71
2330 2525 1.661617 CAAAATGCGCCCATGAACATG 59.338 47.619 4.18 7.70 38.51 3.21
2339 2534 3.157727 CATGAACATGGCCGACTCA 57.842 52.632 0.00 0.00 35.24 3.41
2340 2535 1.452110 CATGAACATGGCCGACTCAA 58.548 50.000 0.00 0.00 35.24 3.02
2341 2536 1.131126 CATGAACATGGCCGACTCAAC 59.869 52.381 0.00 0.00 35.24 3.18
2342 2537 0.107643 TGAACATGGCCGACTCAACA 59.892 50.000 0.00 0.00 0.00 3.33
2343 2538 1.271325 TGAACATGGCCGACTCAACAT 60.271 47.619 0.00 0.00 0.00 2.71
2344 2539 2.027653 TGAACATGGCCGACTCAACATA 60.028 45.455 0.00 0.00 0.00 2.29
2345 2540 2.024176 ACATGGCCGACTCAACATAC 57.976 50.000 0.00 0.00 0.00 2.39
2346 2541 1.555075 ACATGGCCGACTCAACATACT 59.445 47.619 0.00 0.00 0.00 2.12
2347 2542 2.205074 CATGGCCGACTCAACATACTC 58.795 52.381 0.00 0.00 0.00 2.59
2348 2543 1.557099 TGGCCGACTCAACATACTCT 58.443 50.000 0.00 0.00 0.00 3.24
2349 2544 1.476891 TGGCCGACTCAACATACTCTC 59.523 52.381 0.00 0.00 0.00 3.20
2350 2545 1.751924 GGCCGACTCAACATACTCTCT 59.248 52.381 0.00 0.00 0.00 3.10
2351 2546 2.223618 GGCCGACTCAACATACTCTCTC 60.224 54.545 0.00 0.00 0.00 3.20
2352 2547 2.223618 GCCGACTCAACATACTCTCTCC 60.224 54.545 0.00 0.00 0.00 3.71
2353 2548 2.032302 CCGACTCAACATACTCTCTCCG 59.968 54.545 0.00 0.00 0.00 4.63
2354 2549 2.678836 CGACTCAACATACTCTCTCCGT 59.321 50.000 0.00 0.00 0.00 4.69
2355 2550 3.242478 CGACTCAACATACTCTCTCCGTC 60.242 52.174 0.00 0.00 0.00 4.79
2356 2551 3.018149 ACTCAACATACTCTCTCCGTCC 58.982 50.000 0.00 0.00 0.00 4.79
2357 2552 2.359531 CTCAACATACTCTCTCCGTCCC 59.640 54.545 0.00 0.00 0.00 4.46
2358 2553 2.100197 CAACATACTCTCTCCGTCCCA 58.900 52.381 0.00 0.00 0.00 4.37
2359 2554 2.496070 CAACATACTCTCTCCGTCCCAA 59.504 50.000 0.00 0.00 0.00 4.12
2360 2555 2.816411 ACATACTCTCTCCGTCCCAAA 58.184 47.619 0.00 0.00 0.00 3.28
2361 2556 3.170717 ACATACTCTCTCCGTCCCAAAA 58.829 45.455 0.00 0.00 0.00 2.44
2362 2557 3.775316 ACATACTCTCTCCGTCCCAAAAT 59.225 43.478 0.00 0.00 0.00 1.82
2363 2558 4.960469 ACATACTCTCTCCGTCCCAAAATA 59.040 41.667 0.00 0.00 0.00 1.40
2364 2559 5.424252 ACATACTCTCTCCGTCCCAAAATAA 59.576 40.000 0.00 0.00 0.00 1.40
2365 2560 4.903045 ACTCTCTCCGTCCCAAAATAAA 57.097 40.909 0.00 0.00 0.00 1.40
2366 2561 5.437191 ACTCTCTCCGTCCCAAAATAAAT 57.563 39.130 0.00 0.00 0.00 1.40
2367 2562 6.555463 ACTCTCTCCGTCCCAAAATAAATA 57.445 37.500 0.00 0.00 0.00 1.40
2368 2563 7.138054 ACTCTCTCCGTCCCAAAATAAATAT 57.862 36.000 0.00 0.00 0.00 1.28
2369 2564 8.258850 ACTCTCTCCGTCCCAAAATAAATATA 57.741 34.615 0.00 0.00 0.00 0.86
2370 2565 8.711170 ACTCTCTCCGTCCCAAAATAAATATAA 58.289 33.333 0.00 0.00 0.00 0.98
2371 2566 9.555727 CTCTCTCCGTCCCAAAATAAATATAAA 57.444 33.333 0.00 0.00 0.00 1.40
2374 2569 9.854668 TCTCCGTCCCAAAATAAATATAAATCA 57.145 29.630 0.00 0.00 0.00 2.57
2395 2590 9.889128 AAATCAACTACATTTATTTTGGGATGG 57.111 29.630 0.00 0.00 0.00 3.51
2396 2591 8.837099 ATCAACTACATTTATTTTGGGATGGA 57.163 30.769 0.00 0.00 0.00 3.41
2397 2592 8.292444 TCAACTACATTTATTTTGGGATGGAG 57.708 34.615 0.00 0.00 36.68 3.86
2398 2593 7.341769 TCAACTACATTTATTTTGGGATGGAGG 59.658 37.037 0.00 0.00 35.27 4.30
2399 2594 6.136155 ACTACATTTATTTTGGGATGGAGGG 58.864 40.000 0.00 0.00 35.27 4.30
2400 2595 5.219468 ACATTTATTTTGGGATGGAGGGA 57.781 39.130 0.00 0.00 0.00 4.20
2401 2596 5.598754 ACATTTATTTTGGGATGGAGGGAA 58.401 37.500 0.00 0.00 0.00 3.97
2402 2597 6.212022 ACATTTATTTTGGGATGGAGGGAAT 58.788 36.000 0.00 0.00 0.00 3.01
2403 2598 7.369434 ACATTTATTTTGGGATGGAGGGAATA 58.631 34.615 0.00 0.00 0.00 1.75
2404 2599 7.510343 ACATTTATTTTGGGATGGAGGGAATAG 59.490 37.037 0.00 0.00 0.00 1.73
2405 2600 6.857083 TTATTTTGGGATGGAGGGAATAGA 57.143 37.500 0.00 0.00 0.00 1.98
2406 2601 5.955850 ATTTTGGGATGGAGGGAATAGAT 57.044 39.130 0.00 0.00 0.00 1.98
2407 2602 4.729552 TTTGGGATGGAGGGAATAGATG 57.270 45.455 0.00 0.00 0.00 2.90
2408 2603 3.367280 TGGGATGGAGGGAATAGATGT 57.633 47.619 0.00 0.00 0.00 3.06
2409 2604 3.680169 TGGGATGGAGGGAATAGATGTT 58.320 45.455 0.00 0.00 0.00 2.71
2410 2605 3.395607 TGGGATGGAGGGAATAGATGTTG 59.604 47.826 0.00 0.00 0.00 3.33
2411 2606 3.652869 GGGATGGAGGGAATAGATGTTGA 59.347 47.826 0.00 0.00 0.00 3.18
2412 2607 4.505742 GGGATGGAGGGAATAGATGTTGAC 60.506 50.000 0.00 0.00 0.00 3.18
2413 2608 4.103153 GGATGGAGGGAATAGATGTTGACA 59.897 45.833 0.00 0.00 0.00 3.58
2414 2609 5.222007 GGATGGAGGGAATAGATGTTGACAT 60.222 44.000 0.00 0.00 39.70 3.06
2415 2610 5.715439 TGGAGGGAATAGATGTTGACATT 57.285 39.130 0.00 0.00 36.57 2.71
2416 2611 6.078456 TGGAGGGAATAGATGTTGACATTT 57.922 37.500 0.00 0.00 36.57 2.32
2417 2612 5.887598 TGGAGGGAATAGATGTTGACATTTG 59.112 40.000 0.00 0.00 36.57 2.32
2418 2613 5.221126 GGAGGGAATAGATGTTGACATTTGC 60.221 44.000 0.00 0.00 36.57 3.68
2419 2614 5.263599 AGGGAATAGATGTTGACATTTGCA 58.736 37.500 0.00 0.00 36.57 4.08
2420 2615 5.716228 AGGGAATAGATGTTGACATTTGCAA 59.284 36.000 0.00 0.00 36.57 4.08
2421 2616 6.381994 AGGGAATAGATGTTGACATTTGCAAT 59.618 34.615 0.00 0.00 36.57 3.56
2422 2617 7.560991 AGGGAATAGATGTTGACATTTGCAATA 59.439 33.333 0.00 0.00 36.57 1.90
2423 2618 8.362639 GGGAATAGATGTTGACATTTGCAATAT 58.637 33.333 0.00 0.00 36.57 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.093291 CCGGCTTGCCTGCTCTCT 62.093 66.667 10.12 0.00 0.00 3.10
1 2 3.397613 ATCCGGCTTGCCTGCTCTC 62.398 63.158 10.12 0.00 0.00 3.20
2 3 3.397613 GATCCGGCTTGCCTGCTCT 62.398 63.158 10.12 0.00 0.00 4.09
3 4 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
4 5 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
5 6 4.496336 AGGATCCGGCTTGCCTGC 62.496 66.667 5.98 0.00 0.00 4.85
6 7 2.515523 CAGGATCCGGCTTGCCTG 60.516 66.667 5.98 14.40 41.62 4.85
7 8 2.262774 CTTCAGGATCCGGCTTGCCT 62.263 60.000 7.07 0.00 0.00 4.75
8 9 1.821332 CTTCAGGATCCGGCTTGCC 60.821 63.158 7.07 0.75 0.00 4.52
9 10 2.476320 GCTTCAGGATCCGGCTTGC 61.476 63.158 7.07 7.34 0.00 4.01
10 11 1.821332 GGCTTCAGGATCCGGCTTG 60.821 63.158 7.07 0.00 0.00 4.01
11 12 2.300967 TGGCTTCAGGATCCGGCTT 61.301 57.895 7.07 0.00 0.00 4.35
12 13 2.688666 TGGCTTCAGGATCCGGCT 60.689 61.111 7.07 0.00 0.00 5.52
13 14 2.514824 GTGGCTTCAGGATCCGGC 60.515 66.667 7.07 9.85 0.00 6.13
14 15 1.450312 GTGTGGCTTCAGGATCCGG 60.450 63.158 5.98 5.68 0.00 5.14
15 16 0.321564 TTGTGTGGCTTCAGGATCCG 60.322 55.000 5.98 1.36 0.00 4.18
16 17 1.747355 CATTGTGTGGCTTCAGGATCC 59.253 52.381 2.48 2.48 0.00 3.36
17 18 2.715046 TCATTGTGTGGCTTCAGGATC 58.285 47.619 0.00 0.00 0.00 3.36
18 19 2.885135 TCATTGTGTGGCTTCAGGAT 57.115 45.000 0.00 0.00 0.00 3.24
19 20 2.224843 ACATCATTGTGTGGCTTCAGGA 60.225 45.455 0.00 0.00 33.85 3.86
20 21 2.163010 GACATCATTGTGTGGCTTCAGG 59.837 50.000 0.00 0.00 35.79 3.86
21 22 2.159612 CGACATCATTGTGTGGCTTCAG 60.160 50.000 0.00 0.00 35.79 3.02
22 23 1.805943 CGACATCATTGTGTGGCTTCA 59.194 47.619 0.00 0.00 35.79 3.02
23 24 2.076100 TCGACATCATTGTGTGGCTTC 58.924 47.619 0.00 0.00 35.79 3.86
24 25 2.183478 TCGACATCATTGTGTGGCTT 57.817 45.000 0.00 0.00 35.79 4.35
25 26 2.011947 CATCGACATCATTGTGTGGCT 58.988 47.619 0.00 0.00 35.79 4.75
26 27 1.739466 ACATCGACATCATTGTGTGGC 59.261 47.619 0.00 0.00 35.79 5.01
27 28 3.264947 AGACATCGACATCATTGTGTGG 58.735 45.455 0.00 0.00 35.79 4.17
28 29 4.511457 GAGACATCGACATCATTGTGTG 57.489 45.455 0.00 0.00 35.79 3.82
42 43 3.118956 ACCTGACAGATTTCCGAGACATC 60.119 47.826 3.32 0.00 0.00 3.06
43 44 2.834549 ACCTGACAGATTTCCGAGACAT 59.165 45.455 3.32 0.00 0.00 3.06
44 45 2.248248 ACCTGACAGATTTCCGAGACA 58.752 47.619 3.32 0.00 0.00 3.41
45 46 3.192844 TGTACCTGACAGATTTCCGAGAC 59.807 47.826 3.32 0.00 32.86 3.36
46 47 3.427573 TGTACCTGACAGATTTCCGAGA 58.572 45.455 3.32 0.00 32.86 4.04
47 48 3.868757 TGTACCTGACAGATTTCCGAG 57.131 47.619 3.32 0.00 32.86 4.63
48 49 4.819105 AATGTACCTGACAGATTTCCGA 57.181 40.909 3.32 0.00 42.79 4.55
49 50 4.332819 GGAAATGTACCTGACAGATTTCCG 59.667 45.833 21.49 2.62 42.79 4.30
50 51 5.501156 AGGAAATGTACCTGACAGATTTCC 58.499 41.667 25.25 25.25 42.79 3.13
51 52 6.255887 CGTAGGAAATGTACCTGACAGATTTC 59.744 42.308 14.57 14.57 42.79 2.17
52 53 6.070995 TCGTAGGAAATGTACCTGACAGATTT 60.071 38.462 3.32 1.75 42.79 2.17
53 54 5.421056 TCGTAGGAAATGTACCTGACAGATT 59.579 40.000 3.32 0.00 42.79 2.40
54 55 4.954202 TCGTAGGAAATGTACCTGACAGAT 59.046 41.667 3.32 0.00 42.79 2.90
55 56 4.338012 TCGTAGGAAATGTACCTGACAGA 58.662 43.478 3.32 0.00 42.79 3.41
56 57 4.713824 TCGTAGGAAATGTACCTGACAG 57.286 45.455 0.00 0.00 42.79 3.51
72 73 2.873472 AGCGACTACCATCTCTTCGTAG 59.127 50.000 0.00 0.00 36.40 3.51
80 81 3.097614 AGGTTTGTAGCGACTACCATCT 58.902 45.455 18.57 4.70 36.24 2.90
94 95 2.193536 GGCAGGAACGCAGGTTTGT 61.194 57.895 0.00 0.00 36.24 2.83
99 100 1.586154 AAAATCGGCAGGAACGCAGG 61.586 55.000 0.00 0.00 0.00 4.85
106 107 3.713826 ACTAAAGGAAAATCGGCAGGA 57.286 42.857 0.00 0.00 0.00 3.86
114 115 8.768397 ACCTTTGAGGAAAAACTAAAGGAAAAT 58.232 29.630 17.94 0.00 46.43 1.82
116 117 7.364320 CCACCTTTGAGGAAAAACTAAAGGAAA 60.364 37.037 17.94 0.00 46.43 3.13
124 125 1.681264 CGCCACCTTTGAGGAAAAACT 59.319 47.619 0.07 0.00 37.67 2.66
129 130 2.158813 GGATATCGCCACCTTTGAGGAA 60.159 50.000 0.07 0.00 37.67 3.36
142 143 3.321111 TCAGAAACTGTAGGGGATATCGC 59.679 47.826 11.21 11.21 32.61 4.58
147 148 5.339530 CCAGAATTCAGAAACTGTAGGGGAT 60.340 44.000 8.44 0.00 32.61 3.85
148 149 4.019321 CCAGAATTCAGAAACTGTAGGGGA 60.019 45.833 8.44 0.00 32.61 4.81
151 152 4.326826 TGCCAGAATTCAGAAACTGTAGG 58.673 43.478 8.44 5.94 32.61 3.18
152 153 5.335191 GGTTGCCAGAATTCAGAAACTGTAG 60.335 44.000 15.33 6.40 32.61 2.74
194 199 3.454812 AGCATAAGGGTTCAGATAACCGT 59.545 43.478 1.08 0.00 41.18 4.83
215 220 1.944024 TGCACAACCGTGAAACCTAAG 59.056 47.619 0.00 0.00 46.80 2.18
217 222 1.301423 GTGCACAACCGTGAAACCTA 58.699 50.000 13.17 0.00 46.80 3.08
218 223 1.381165 GGTGCACAACCGTGAAACCT 61.381 55.000 20.43 0.00 46.80 3.50
220 225 4.702020 GGTGCACAACCGTGAAAC 57.298 55.556 20.43 0.00 46.80 2.78
231 254 3.702555 GAGTGACGCGTGGTGCAC 61.703 66.667 20.70 19.03 46.97 4.57
250 273 3.052082 CCTTCCAGCAGGCACACG 61.052 66.667 0.00 0.00 33.74 4.49
270 298 5.967088 TCTAGAGTTTTCTGTGTCTATGCC 58.033 41.667 0.00 0.00 34.79 4.40
301 329 2.535984 CACGATTCGTAGCAACCAGATC 59.464 50.000 11.99 0.00 38.32 2.75
323 352 4.502962 TGCTGGGTTCTTTGTTTCTTTTG 58.497 39.130 0.00 0.00 0.00 2.44
324 353 4.817318 TGCTGGGTTCTTTGTTTCTTTT 57.183 36.364 0.00 0.00 0.00 2.27
339 373 2.808202 CGATTCAAGGGTAGATGCTGGG 60.808 54.545 0.00 0.00 0.00 4.45
361 395 5.522460 GGTTAAATCATCAGAAATCGGTCGA 59.478 40.000 0.00 0.00 0.00 4.20
362 396 5.556382 CGGTTAAATCATCAGAAATCGGTCG 60.556 44.000 0.00 0.00 0.00 4.79
363 397 5.277345 CCGGTTAAATCATCAGAAATCGGTC 60.277 44.000 0.00 0.00 0.00 4.79
365 399 4.814234 TCCGGTTAAATCATCAGAAATCGG 59.186 41.667 0.00 0.00 0.00 4.18
366 400 5.277345 GGTCCGGTTAAATCATCAGAAATCG 60.277 44.000 0.00 0.00 0.00 3.34
367 401 5.588648 TGGTCCGGTTAAATCATCAGAAATC 59.411 40.000 0.00 0.00 0.00 2.17
368 402 5.505780 TGGTCCGGTTAAATCATCAGAAAT 58.494 37.500 0.00 0.00 0.00 2.17
369 403 4.912586 TGGTCCGGTTAAATCATCAGAAA 58.087 39.130 0.00 0.00 0.00 2.52
370 404 4.561500 TGGTCCGGTTAAATCATCAGAA 57.438 40.909 0.00 0.00 0.00 3.02
373 407 2.948979 GCATGGTCCGGTTAAATCATCA 59.051 45.455 0.00 0.00 0.00 3.07
375 409 3.011566 TGCATGGTCCGGTTAAATCAT 57.988 42.857 0.00 0.00 0.00 2.45
377 411 3.632145 AGAATGCATGGTCCGGTTAAATC 59.368 43.478 0.00 0.00 0.00 2.17
378 412 3.631250 AGAATGCATGGTCCGGTTAAAT 58.369 40.909 0.00 0.00 0.00 1.40
380 414 2.639065 GAGAATGCATGGTCCGGTTAA 58.361 47.619 0.00 0.00 0.00 2.01
381 415 1.134220 GGAGAATGCATGGTCCGGTTA 60.134 52.381 10.96 0.00 0.00 2.85
383 417 1.224592 GGAGAATGCATGGTCCGGT 59.775 57.895 10.96 0.00 0.00 5.28
384 418 0.533755 GAGGAGAATGCATGGTCCGG 60.534 60.000 17.78 0.00 33.99 5.14
385 419 0.877649 CGAGGAGAATGCATGGTCCG 60.878 60.000 17.78 7.17 33.99 4.79
386 420 0.179000 ACGAGGAGAATGCATGGTCC 59.821 55.000 16.63 16.63 0.00 4.46
387 421 1.137872 AGACGAGGAGAATGCATGGTC 59.862 52.381 0.00 0.00 0.00 4.02
388 422 1.137872 GAGACGAGGAGAATGCATGGT 59.862 52.381 0.00 0.00 0.00 3.55
390 424 1.485397 CGAGACGAGGAGAATGCATG 58.515 55.000 0.00 0.00 0.00 4.06
394 441 1.298713 CGGCGAGACGAGGAGAATG 60.299 63.158 0.00 0.00 35.47 2.67
412 459 1.606350 CGACGTTGCCAACTCGAGAC 61.606 60.000 21.68 4.37 35.52 3.36
425 472 0.669625 GAGGCAGGTAAAGCGACGTT 60.670 55.000 0.00 0.00 0.00 3.99
438 485 2.743636 TCTTCGTTGGTAAGAGGCAG 57.256 50.000 0.00 0.00 0.00 4.85
447 494 4.238514 CGATCTTCTTCTTCTTCGTTGGT 58.761 43.478 0.00 0.00 0.00 3.67
478 539 4.439289 GGAATCTAAACCTCTGCATGCAAC 60.439 45.833 22.88 0.00 0.00 4.17
506 568 1.808945 CCAGCATCAGACACCAAAGAC 59.191 52.381 0.00 0.00 0.00 3.01
507 569 1.421268 ACCAGCATCAGACACCAAAGA 59.579 47.619 0.00 0.00 0.00 2.52
508 570 1.901591 ACCAGCATCAGACACCAAAG 58.098 50.000 0.00 0.00 0.00 2.77
509 571 2.363306 AACCAGCATCAGACACCAAA 57.637 45.000 0.00 0.00 0.00 3.28
510 572 2.552155 GGTAACCAGCATCAGACACCAA 60.552 50.000 0.00 0.00 0.00 3.67
512 574 1.739067 GGTAACCAGCATCAGACACC 58.261 55.000 0.00 0.00 0.00 4.16
515 589 1.204941 ACTCGGTAACCAGCATCAGAC 59.795 52.381 0.00 0.00 0.00 3.51
592 667 8.991243 TGTCGCTATTTACAATTACAGTAGTT 57.009 30.769 0.00 0.00 0.00 2.24
610 689 0.820226 ATCTCTGCTTGCTGTCGCTA 59.180 50.000 0.00 0.00 36.97 4.26
637 717 4.018506 TGGGGGCATCATATTCATACGATT 60.019 41.667 0.00 0.00 0.00 3.34
647 727 2.635915 CAAGCAAATGGGGGCATCATAT 59.364 45.455 0.00 0.00 0.00 1.78
655 735 4.563374 CCTTTAACTTCAAGCAAATGGGGG 60.563 45.833 0.00 0.00 0.00 5.40
744 830 3.539431 AAGCTACTCGATCGTTATCCG 57.461 47.619 15.94 1.61 38.13 4.18
745 831 6.248839 CGAATAAAGCTACTCGATCGTTATCC 59.751 42.308 15.94 2.55 28.18 2.59
829 922 1.400242 GCACTTTTAGTGGCGCTTCTG 60.400 52.381 5.61 0.00 46.01 3.02
836 929 2.668279 CGTGGATTGCACTTTTAGTGGC 60.668 50.000 6.74 2.53 46.01 5.01
876 971 1.401539 GCAAACCGAAGATCAAGTGGC 60.402 52.381 0.00 0.00 0.00 5.01
879 974 1.537202 GCTGCAAACCGAAGATCAAGT 59.463 47.619 0.00 0.00 0.00 3.16
914 1009 2.427245 CCGGTGCTGGACCTAGAGG 61.427 68.421 16.57 6.21 43.55 3.69
946 1041 1.892862 CAGATGGCTGCCTGCTAGC 60.893 63.158 21.03 8.10 42.39 3.42
967 1067 6.041069 ACTGACTATGAACTATGAACCCTAGC 59.959 42.308 0.00 0.00 0.00 3.42
1071 1199 8.530311 TGGAATGCAAGAAACACAAACATATAT 58.470 29.630 0.00 0.00 0.00 0.86
1075 1209 5.021033 TGGAATGCAAGAAACACAAACAT 57.979 34.783 0.00 0.00 0.00 2.71
1103 1237 3.384467 TGAGCAAACAAGAAGGGGAAAAG 59.616 43.478 0.00 0.00 0.00 2.27
1108 1242 0.593128 CGTGAGCAAACAAGAAGGGG 59.407 55.000 0.00 0.00 0.00 4.79
1264 1403 1.792006 CCGTCAGGTTCGTAGCTTTT 58.208 50.000 0.00 0.00 0.00 2.27
1292 1431 5.354234 CCACATAGTTTACGCAGAGGAAATT 59.646 40.000 0.00 0.00 0.00 1.82
1293 1432 4.876107 CCACATAGTTTACGCAGAGGAAAT 59.124 41.667 0.00 0.00 0.00 2.17
1294 1433 4.250464 CCACATAGTTTACGCAGAGGAAA 58.750 43.478 0.00 0.00 0.00 3.13
1295 1434 3.369052 CCCACATAGTTTACGCAGAGGAA 60.369 47.826 0.00 0.00 0.00 3.36
1354 1499 3.242248 CAGGCTATTCGTACGTAGTTTGC 59.758 47.826 16.05 12.52 37.78 3.68
1355 1500 3.795101 CCAGGCTATTCGTACGTAGTTTG 59.205 47.826 16.05 11.85 37.78 2.93
1370 1517 2.984623 CACAGAGCAGCCAGGCTA 59.015 61.111 15.64 0.00 45.99 3.93
1462 1609 4.773117 GTCGGCCGTCGTCTGGAC 62.773 72.222 27.15 9.55 42.48 4.02
1483 1630 3.726517 GGTTCGTCGGTCGGTCGA 61.727 66.667 0.00 7.23 40.32 4.20
1622 1769 2.091555 ACTCTGTTCTAGGCCTCTAGGG 60.092 54.545 9.68 4.10 42.42 3.53
1637 1784 5.537300 TTCTTTCTGCAGTTCTACTCTGT 57.463 39.130 14.67 0.00 35.60 3.41
1640 1787 5.522097 GGCTATTCTTTCTGCAGTTCTACTC 59.478 44.000 14.67 0.00 0.00 2.59
1719 1866 7.713764 TCAGATACATACATACATGCAACAC 57.286 36.000 0.00 0.00 0.00 3.32
1723 1870 7.669427 TCACATCAGATACATACATACATGCA 58.331 34.615 0.00 0.00 0.00 3.96
1724 1871 8.713737 ATCACATCAGATACATACATACATGC 57.286 34.615 0.00 0.00 0.00 4.06
1725 1872 9.310716 GGATCACATCAGATACATACATACATG 57.689 37.037 0.00 0.00 0.00 3.21
1726 1873 8.481314 GGGATCACATCAGATACATACATACAT 58.519 37.037 0.00 0.00 30.02 2.29
1727 1874 7.093333 GGGGATCACATCAGATACATACATACA 60.093 40.741 0.00 0.00 30.02 2.29
1728 1875 7.124901 AGGGGATCACATCAGATACATACATAC 59.875 40.741 0.00 0.00 30.02 2.39
1729 1876 7.191918 AGGGGATCACATCAGATACATACATA 58.808 38.462 0.00 0.00 30.02 2.29
1730 1877 6.028131 AGGGGATCACATCAGATACATACAT 58.972 40.000 0.00 0.00 30.02 2.29
1731 1878 5.406163 AGGGGATCACATCAGATACATACA 58.594 41.667 0.00 0.00 30.02 2.29
1732 1879 7.482169 TTAGGGGATCACATCAGATACATAC 57.518 40.000 0.00 0.00 30.02 2.39
1733 1880 8.504811 TTTTAGGGGATCACATCAGATACATA 57.495 34.615 0.00 0.00 30.02 2.29
1734 1881 7.392766 TTTTAGGGGATCACATCAGATACAT 57.607 36.000 0.00 0.00 30.02 2.29
1735 1882 6.823286 TTTTAGGGGATCACATCAGATACA 57.177 37.500 0.00 0.00 30.02 2.29
1758 1905 7.827701 TCGTAGACTCACATCAGATACTTTTT 58.172 34.615 0.00 0.00 0.00 1.94
1759 1906 7.392494 TCGTAGACTCACATCAGATACTTTT 57.608 36.000 0.00 0.00 0.00 2.27
1760 1907 7.392494 TTCGTAGACTCACATCAGATACTTT 57.608 36.000 0.00 0.00 34.32 2.66
1761 1908 7.575414 ATTCGTAGACTCACATCAGATACTT 57.425 36.000 0.00 0.00 34.32 2.24
1762 1909 8.678593 TTATTCGTAGACTCACATCAGATACT 57.321 34.615 0.00 0.00 34.32 2.12
1788 1935 4.917998 GCCGAACTTTTCTTTTTCCTCATC 59.082 41.667 0.00 0.00 0.00 2.92
1802 1952 3.695830 TCATAGAAGGTGCCGAACTTT 57.304 42.857 0.00 0.00 0.00 2.66
1809 1959 2.216898 GCTCACATCATAGAAGGTGCC 58.783 52.381 0.00 0.00 0.00 5.01
1858 2008 6.043590 TCCTGTGAGCCTGATATTGATAATGT 59.956 38.462 0.00 0.00 0.00 2.71
1917 2074 1.281353 GTTTGCGTTCGTCATGGCA 59.719 52.632 0.00 0.00 0.00 4.92
1927 2084 3.894947 GGGGCGTGTGTTTGCGTT 61.895 61.111 0.00 0.00 0.00 4.84
1945 2102 2.611292 GGTGCGATTCAATTCTCTGGAG 59.389 50.000 0.00 0.00 0.00 3.86
1957 2114 0.992802 GACTCTGTTCGGTGCGATTC 59.007 55.000 0.00 0.00 35.23 2.52
1964 2121 2.431057 ACTCTGTTTGACTCTGTTCGGT 59.569 45.455 0.00 0.00 0.00 4.69
1969 2126 3.462021 GCTTCACTCTGTTTGACTCTGT 58.538 45.455 0.00 0.00 0.00 3.41
1971 2128 2.546795 CCGCTTCACTCTGTTTGACTCT 60.547 50.000 0.00 0.00 0.00 3.24
1996 2153 1.134670 GTGCCTCTTCGCTTCCTGTAT 60.135 52.381 0.00 0.00 0.00 2.29
1998 2155 1.004440 GTGCCTCTTCGCTTCCTGT 60.004 57.895 0.00 0.00 0.00 4.00
2025 2182 4.061596 CCTGTCTCTTCAGGTTCTTGTTC 58.938 47.826 4.75 0.00 46.92 3.18
2048 2205 3.444703 CACTACCAGTGCTAGCCTTAG 57.555 52.381 13.29 10.44 39.62 2.18
2062 2257 0.443869 CACAGATTGCGCACACTACC 59.556 55.000 11.12 0.00 0.00 3.18
2064 2259 1.298157 GCCACAGATTGCGCACACTA 61.298 55.000 11.12 0.00 0.00 2.74
2092 2287 0.974383 AACCGGAGAGACGAAACCAT 59.026 50.000 9.46 0.00 35.47 3.55
2093 2288 0.032952 CAACCGGAGAGACGAAACCA 59.967 55.000 9.46 0.00 35.47 3.67
2094 2289 1.289800 GCAACCGGAGAGACGAAACC 61.290 60.000 9.46 0.00 35.47 3.27
2095 2290 1.615107 CGCAACCGGAGAGACGAAAC 61.615 60.000 9.46 0.00 35.47 2.78
2097 2292 2.257371 CGCAACCGGAGAGACGAA 59.743 61.111 9.46 0.00 35.47 3.85
2098 2293 4.415332 GCGCAACCGGAGAGACGA 62.415 66.667 9.46 0.00 35.47 4.20
2147 2342 3.257561 CTTCGTGGATCGCCGCTG 61.258 66.667 0.00 0.00 42.66 5.18
2148 2343 2.298158 ATTCTTCGTGGATCGCCGCT 62.298 55.000 0.00 0.00 42.66 5.52
2149 2344 0.596600 TATTCTTCGTGGATCGCCGC 60.597 55.000 0.00 0.00 41.39 6.53
2150 2345 1.721389 CATATTCTTCGTGGATCGCCG 59.279 52.381 0.00 0.00 39.67 6.46
2151 2346 2.476619 CACATATTCTTCGTGGATCGCC 59.523 50.000 0.00 0.00 39.67 5.54
2162 2357 1.439353 CCGCCGCTGCACATATTCTT 61.439 55.000 0.00 0.00 37.32 2.52
2187 2382 0.967380 CAGGATGCCCTTTGTCCACC 60.967 60.000 0.00 0.00 42.02 4.61
2208 2403 3.827784 CAACGCGCGAGAAGACGG 61.828 66.667 39.36 11.77 0.00 4.79
2238 2433 4.500116 GAGGAGTCTCCACGCCGC 62.500 72.222 21.26 0.00 46.80 6.53
2246 2441 1.000993 TGGAGCCTGGAGGAGTCTC 59.999 63.158 0.00 0.00 39.25 3.36
2247 2442 1.001503 CTGGAGCCTGGAGGAGTCT 59.998 63.158 0.00 0.00 37.39 3.24
2248 2443 2.730524 GCTGGAGCCTGGAGGAGTC 61.731 68.421 0.00 0.00 37.39 3.36
2249 2444 2.686835 GCTGGAGCCTGGAGGAGT 60.687 66.667 0.00 0.00 37.39 3.85
2250 2445 2.296365 TTGCTGGAGCCTGGAGGAG 61.296 63.158 0.00 0.00 41.18 3.69
2251 2446 2.203983 TTGCTGGAGCCTGGAGGA 60.204 61.111 0.00 0.00 41.18 3.71
2281 2476 4.530857 CTTCGTGGGCGGGGCTAG 62.531 72.222 0.00 0.00 38.89 3.42
2285 2480 3.952628 GAGAACTTCGTGGGCGGGG 62.953 68.421 0.00 0.00 38.89 5.73
2286 2481 2.434359 GAGAACTTCGTGGGCGGG 60.434 66.667 0.00 0.00 38.89 6.13
2287 2482 0.882927 TTTGAGAACTTCGTGGGCGG 60.883 55.000 0.00 0.00 38.89 6.13
2288 2483 0.512952 CTTTGAGAACTTCGTGGGCG 59.487 55.000 0.00 0.00 39.92 6.13
2289 2484 1.878953 TCTTTGAGAACTTCGTGGGC 58.121 50.000 0.00 0.00 0.00 5.36
2299 2494 3.380142 GGCGCATTTTGTTCTTTGAGAA 58.620 40.909 10.83 0.00 0.00 2.87
2300 2495 2.288152 GGGCGCATTTTGTTCTTTGAGA 60.288 45.455 10.83 0.00 0.00 3.27
2301 2496 2.061028 GGGCGCATTTTGTTCTTTGAG 58.939 47.619 10.83 0.00 0.00 3.02
2302 2497 1.410517 TGGGCGCATTTTGTTCTTTGA 59.589 42.857 10.83 0.00 0.00 2.69
2303 2498 1.863267 TGGGCGCATTTTGTTCTTTG 58.137 45.000 10.83 0.00 0.00 2.77
2304 2499 2.036992 TCATGGGCGCATTTTGTTCTTT 59.963 40.909 14.46 0.00 0.00 2.52
2305 2500 1.617850 TCATGGGCGCATTTTGTTCTT 59.382 42.857 14.46 0.00 0.00 2.52
2306 2501 1.255882 TCATGGGCGCATTTTGTTCT 58.744 45.000 14.46 0.00 0.00 3.01
2307 2502 1.726248 GTTCATGGGCGCATTTTGTTC 59.274 47.619 14.46 0.00 0.00 3.18
2308 2503 1.069823 TGTTCATGGGCGCATTTTGTT 59.930 42.857 14.46 0.00 0.00 2.83
2309 2504 0.678395 TGTTCATGGGCGCATTTTGT 59.322 45.000 14.46 0.00 0.00 2.83
2310 2505 1.661617 CATGTTCATGGGCGCATTTTG 59.338 47.619 14.46 4.93 0.00 2.44
2311 2506 1.405797 CCATGTTCATGGGCGCATTTT 60.406 47.619 20.44 0.00 38.04 1.82
2312 2507 0.176219 CCATGTTCATGGGCGCATTT 59.824 50.000 20.44 0.00 38.04 2.32
2313 2508 1.817881 CCATGTTCATGGGCGCATT 59.182 52.632 20.44 0.00 38.04 3.56
2314 2509 2.788640 GCCATGTTCATGGGCGCAT 61.789 57.895 26.55 11.00 41.94 4.73
2315 2510 3.451004 GCCATGTTCATGGGCGCA 61.451 61.111 26.55 5.70 41.94 6.09
2319 2514 1.077501 AGTCGGCCATGTTCATGGG 60.078 57.895 26.55 14.92 41.94 4.00
2320 2515 0.392863 TGAGTCGGCCATGTTCATGG 60.393 55.000 22.95 22.95 44.44 3.66
2321 2516 1.131126 GTTGAGTCGGCCATGTTCATG 59.869 52.381 2.24 5.88 0.00 3.07
2322 2517 1.271325 TGTTGAGTCGGCCATGTTCAT 60.271 47.619 2.24 0.00 0.00 2.57
2323 2518 0.107643 TGTTGAGTCGGCCATGTTCA 59.892 50.000 2.24 0.00 0.00 3.18
2324 2519 1.453155 ATGTTGAGTCGGCCATGTTC 58.547 50.000 2.24 0.00 0.00 3.18
2325 2520 2.027192 AGTATGTTGAGTCGGCCATGTT 60.027 45.455 2.24 0.00 0.00 2.71
2326 2521 1.555075 AGTATGTTGAGTCGGCCATGT 59.445 47.619 2.24 0.00 0.00 3.21
2327 2522 2.159043 AGAGTATGTTGAGTCGGCCATG 60.159 50.000 2.24 0.00 0.00 3.66
2328 2523 2.101582 GAGAGTATGTTGAGTCGGCCAT 59.898 50.000 2.24 0.00 0.00 4.40
2329 2524 1.476891 GAGAGTATGTTGAGTCGGCCA 59.523 52.381 2.24 0.00 0.00 5.36
2330 2525 1.751924 AGAGAGTATGTTGAGTCGGCC 59.248 52.381 0.00 0.00 0.00 6.13
2331 2526 2.223618 GGAGAGAGTATGTTGAGTCGGC 60.224 54.545 0.00 0.00 0.00 5.54
2332 2527 2.032302 CGGAGAGAGTATGTTGAGTCGG 59.968 54.545 0.00 0.00 0.00 4.79
2333 2528 2.678836 ACGGAGAGAGTATGTTGAGTCG 59.321 50.000 0.00 0.00 0.00 4.18
2334 2529 3.065648 GGACGGAGAGAGTATGTTGAGTC 59.934 52.174 0.00 0.00 0.00 3.36
2335 2530 3.018149 GGACGGAGAGAGTATGTTGAGT 58.982 50.000 0.00 0.00 0.00 3.41
2336 2531 2.359531 GGGACGGAGAGAGTATGTTGAG 59.640 54.545 0.00 0.00 0.00 3.02
2337 2532 2.291346 TGGGACGGAGAGAGTATGTTGA 60.291 50.000 0.00 0.00 0.00 3.18
2338 2533 2.100197 TGGGACGGAGAGAGTATGTTG 58.900 52.381 0.00 0.00 0.00 3.33
2339 2534 2.526888 TGGGACGGAGAGAGTATGTT 57.473 50.000 0.00 0.00 0.00 2.71
2340 2535 2.526888 TTGGGACGGAGAGAGTATGT 57.473 50.000 0.00 0.00 0.00 2.29
2341 2536 3.887621 TTTTGGGACGGAGAGAGTATG 57.112 47.619 0.00 0.00 0.00 2.39
2342 2537 6.555463 TTTATTTTGGGACGGAGAGAGTAT 57.445 37.500 0.00 0.00 0.00 2.12
2343 2538 6.555463 ATTTATTTTGGGACGGAGAGAGTA 57.445 37.500 0.00 0.00 0.00 2.59
2344 2539 4.903045 TTTATTTTGGGACGGAGAGAGT 57.097 40.909 0.00 0.00 0.00 3.24
2345 2540 9.555727 TTTATATTTATTTTGGGACGGAGAGAG 57.444 33.333 0.00 0.00 0.00 3.20
2348 2543 9.854668 TGATTTATATTTATTTTGGGACGGAGA 57.145 29.630 0.00 0.00 0.00 3.71
2369 2564 9.889128 CCATCCCAAAATAAATGTAGTTGATTT 57.111 29.630 0.00 0.00 0.00 2.17
2370 2565 9.265862 TCCATCCCAAAATAAATGTAGTTGATT 57.734 29.630 0.00 0.00 0.00 2.57
2371 2566 8.837099 TCCATCCCAAAATAAATGTAGTTGAT 57.163 30.769 0.00 0.00 0.00 2.57
2372 2567 7.341769 CCTCCATCCCAAAATAAATGTAGTTGA 59.658 37.037 0.00 0.00 0.00 3.18
2373 2568 7.417797 CCCTCCATCCCAAAATAAATGTAGTTG 60.418 40.741 0.00 0.00 0.00 3.16
2374 2569 6.611236 CCCTCCATCCCAAAATAAATGTAGTT 59.389 38.462 0.00 0.00 0.00 2.24
2375 2570 6.068498 TCCCTCCATCCCAAAATAAATGTAGT 60.068 38.462 0.00 0.00 0.00 2.73
2376 2571 6.372931 TCCCTCCATCCCAAAATAAATGTAG 58.627 40.000 0.00 0.00 0.00 2.74
2377 2572 6.348478 TCCCTCCATCCCAAAATAAATGTA 57.652 37.500 0.00 0.00 0.00 2.29
2378 2573 5.219468 TCCCTCCATCCCAAAATAAATGT 57.781 39.130 0.00 0.00 0.00 2.71
2379 2574 6.752285 ATTCCCTCCATCCCAAAATAAATG 57.248 37.500 0.00 0.00 0.00 2.32
2380 2575 7.836142 TCTATTCCCTCCATCCCAAAATAAAT 58.164 34.615 0.00 0.00 0.00 1.40
2381 2576 7.232552 TCTATTCCCTCCATCCCAAAATAAA 57.767 36.000 0.00 0.00 0.00 1.40
2382 2577 6.857083 TCTATTCCCTCCATCCCAAAATAA 57.143 37.500 0.00 0.00 0.00 1.40
2383 2578 6.335311 ACATCTATTCCCTCCATCCCAAAATA 59.665 38.462 0.00 0.00 0.00 1.40
2384 2579 5.136737 ACATCTATTCCCTCCATCCCAAAAT 59.863 40.000 0.00 0.00 0.00 1.82
2385 2580 4.482025 ACATCTATTCCCTCCATCCCAAAA 59.518 41.667 0.00 0.00 0.00 2.44
2386 2581 4.054369 ACATCTATTCCCTCCATCCCAAA 58.946 43.478 0.00 0.00 0.00 3.28
2387 2582 3.680169 ACATCTATTCCCTCCATCCCAA 58.320 45.455 0.00 0.00 0.00 4.12
2388 2583 3.367280 ACATCTATTCCCTCCATCCCA 57.633 47.619 0.00 0.00 0.00 4.37
2389 2584 3.652869 TCAACATCTATTCCCTCCATCCC 59.347 47.826 0.00 0.00 0.00 3.85
2390 2585 4.103153 TGTCAACATCTATTCCCTCCATCC 59.897 45.833 0.00 0.00 0.00 3.51
2391 2586 5.296151 TGTCAACATCTATTCCCTCCATC 57.704 43.478 0.00 0.00 0.00 3.51
2392 2587 5.919348 ATGTCAACATCTATTCCCTCCAT 57.081 39.130 0.00 0.00 28.78 3.41
2393 2588 5.715439 AATGTCAACATCTATTCCCTCCA 57.285 39.130 0.00 0.00 35.10 3.86
2394 2589 5.221126 GCAAATGTCAACATCTATTCCCTCC 60.221 44.000 0.00 0.00 35.10 4.30
2395 2590 5.357878 TGCAAATGTCAACATCTATTCCCTC 59.642 40.000 0.00 0.00 35.10 4.30
2396 2591 5.263599 TGCAAATGTCAACATCTATTCCCT 58.736 37.500 0.00 0.00 35.10 4.20
2397 2592 5.581126 TGCAAATGTCAACATCTATTCCC 57.419 39.130 0.00 0.00 35.10 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.