Multiple sequence alignment - TraesCS3A01G318800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G318800 chr3A 100.000 3472 0 0 1 3472 561037751 561034280 0.000000e+00 6412
1 TraesCS3A01G318800 chr3A 97.368 570 15 0 1 570 654801713 654801144 0.000000e+00 970
2 TraesCS3A01G318800 chr3A 100.000 165 0 0 3881 4045 561033871 561033707 5.080000e-79 305
3 TraesCS3A01G318800 chr3B 90.150 2193 130 37 569 2718 556645344 556647493 0.000000e+00 2774
4 TraesCS3A01G318800 chr3B 88.470 451 38 9 2774 3218 556647654 556648096 2.140000e-147 532
5 TraesCS3A01G318800 chr3B 92.701 137 7 2 3333 3469 556648092 556648225 1.150000e-45 195
6 TraesCS3A01G318800 chr3D 91.971 1644 88 21 803 2420 426932213 426933838 0.000000e+00 2265
7 TraesCS3A01G318800 chr3D 91.820 978 67 8 2485 3452 426933966 426934940 0.000000e+00 1351
8 TraesCS3A01G318800 chr3D 93.827 81 5 0 580 660 426931980 426932060 5.490000e-24 122
9 TraesCS3A01G318800 chr1A 98.236 567 10 0 1 567 552339862 552339296 0.000000e+00 992
10 TraesCS3A01G318800 chr2B 97.373 571 14 1 1 571 747783559 747784128 0.000000e+00 970
11 TraesCS3A01G318800 chr2B 96.316 570 18 2 1 567 245144933 245144364 0.000000e+00 933
12 TraesCS3A01G318800 chr7B 97.007 568 16 1 1 567 664802134 664801567 0.000000e+00 953
13 TraesCS3A01G318800 chr7B 97.002 567 16 1 1 567 494577350 494577915 0.000000e+00 952
14 TraesCS3A01G318800 chr6B 96.825 567 18 0 1 567 34351070 34350504 0.000000e+00 948
15 TraesCS3A01G318800 chr6B 95.599 568 24 1 1 567 144327980 144327413 0.000000e+00 909
16 TraesCS3A01G318800 chr4B 95.147 577 27 1 1 576 248876312 248876888 0.000000e+00 909


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G318800 chr3A 561033707 561037751 4044 True 3358.5 6412 100.000000 1 4045 2 chr3A.!!$R2 4044
1 TraesCS3A01G318800 chr3A 654801144 654801713 569 True 970.0 970 97.368000 1 570 1 chr3A.!!$R1 569
2 TraesCS3A01G318800 chr3B 556645344 556648225 2881 False 1167.0 2774 90.440333 569 3469 3 chr3B.!!$F1 2900
3 TraesCS3A01G318800 chr3D 426931980 426934940 2960 False 1246.0 2265 92.539333 580 3452 3 chr3D.!!$F1 2872
4 TraesCS3A01G318800 chr1A 552339296 552339862 566 True 992.0 992 98.236000 1 567 1 chr1A.!!$R1 566
5 TraesCS3A01G318800 chr2B 747783559 747784128 569 False 970.0 970 97.373000 1 571 1 chr2B.!!$F1 570
6 TraesCS3A01G318800 chr2B 245144364 245144933 569 True 933.0 933 96.316000 1 567 1 chr2B.!!$R1 566
7 TraesCS3A01G318800 chr7B 664801567 664802134 567 True 953.0 953 97.007000 1 567 1 chr7B.!!$R1 566
8 TraesCS3A01G318800 chr7B 494577350 494577915 565 False 952.0 952 97.002000 1 567 1 chr7B.!!$F1 566
9 TraesCS3A01G318800 chr6B 34350504 34351070 566 True 948.0 948 96.825000 1 567 1 chr6B.!!$R1 566
10 TraesCS3A01G318800 chr6B 144327413 144327980 567 True 909.0 909 95.599000 1 567 1 chr6B.!!$R2 566
11 TraesCS3A01G318800 chr4B 248876312 248876888 576 False 909.0 909 95.147000 1 576 1 chr4B.!!$F1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 486 0.535335 ATGAAGGCGCGTAAGGAAGA 59.465 50.0 8.43 0.0 38.28 2.87 F
1212 1278 0.248215 GTCGATCCCTTTTGCATGCG 60.248 55.0 14.09 0.0 0.00 4.73 F
1467 1543 0.035317 ATCGCCTGTTGAAGTGCAGA 59.965 50.0 0.00 0.0 34.87 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 1543 0.037046 CGTACCCGGCCTTGTACTTT 60.037 55.0 22.03 0.00 36.13 2.66 R
2372 2463 0.160182 GAACTTAACCGACGTGCACG 59.840 55.0 35.99 35.99 46.33 5.34 R
3171 3445 0.604073 TGCCATCAACATTGCACTGG 59.396 50.0 9.06 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 0.704076 ATGGTTGCAGCTTCCCCTTA 59.296 50.000 0.00 0.00 0.00 2.69
480 486 0.535335 ATGAAGGCGCGTAAGGAAGA 59.465 50.000 8.43 0.00 38.28 2.87
594 600 0.676782 AGTAAGGAATGTGGCACGGC 60.677 55.000 13.77 4.40 0.00 5.68
616 622 3.503748 CCTTGAATGGCGATTATTCCTCC 59.496 47.826 0.00 0.00 34.43 4.30
660 666 2.569059 CATCACATCCATCACCAGACC 58.431 52.381 0.00 0.00 0.00 3.85
661 667 1.956869 TCACATCCATCACCAGACCT 58.043 50.000 0.00 0.00 0.00 3.85
662 668 1.833630 TCACATCCATCACCAGACCTC 59.166 52.381 0.00 0.00 0.00 3.85
663 669 1.836166 CACATCCATCACCAGACCTCT 59.164 52.381 0.00 0.00 0.00 3.69
699 727 9.861919 TCCATATAAATACTAGTTTCCCCCATA 57.138 33.333 0.00 0.00 0.00 2.74
785 838 3.669036 CTCGGTCAGTGAGGCGTCG 62.669 68.421 1.39 0.00 0.00 5.12
786 839 4.039357 CGGTCAGTGAGGCGTCGT 62.039 66.667 1.39 0.00 0.00 4.34
787 840 2.126424 GGTCAGTGAGGCGTCGTC 60.126 66.667 1.39 0.00 0.00 4.20
789 842 2.596338 TCAGTGAGGCGTCGTCCA 60.596 61.111 1.39 0.00 0.00 4.02
790 843 2.197605 TCAGTGAGGCGTCGTCCAA 61.198 57.895 1.39 0.00 0.00 3.53
792 845 3.103911 GTGAGGCGTCGTCCAACG 61.104 66.667 1.39 0.00 45.31 4.10
984 1041 0.799393 GCGCTCTCCTTGTTCCTTTC 59.201 55.000 0.00 0.00 0.00 2.62
1172 1229 0.969409 GGTACGTACCCACTGCCTCT 60.969 60.000 30.84 0.00 40.53 3.69
1175 1232 0.542232 ACGTACCCACTGCCTCTTCT 60.542 55.000 0.00 0.00 0.00 2.85
1181 1238 1.339535 CCCACTGCCTCTTCTTCTTCC 60.340 57.143 0.00 0.00 0.00 3.46
1188 1245 3.906846 TGCCTCTTCTTCTTCCTCTTCTT 59.093 43.478 0.00 0.00 0.00 2.52
1189 1246 4.020662 TGCCTCTTCTTCTTCCTCTTCTTC 60.021 45.833 0.00 0.00 0.00 2.87
1201 1267 2.223618 CCTCTTCTTCTTCGTCGATCCC 60.224 54.545 0.00 0.00 0.00 3.85
1212 1278 0.248215 GTCGATCCCTTTTGCATGCG 60.248 55.000 14.09 0.00 0.00 4.73
1359 1431 1.559368 TTGGGGTGCAATCATTCTGG 58.441 50.000 0.00 0.00 0.00 3.86
1395 1467 6.808212 CGGCAATGTTTTATATCCCATTGATC 59.192 38.462 13.66 5.56 44.28 2.92
1415 1487 5.645067 TGATCTGATTAGCTGTTTCCTTGTG 59.355 40.000 0.00 0.00 0.00 3.33
1430 1502 2.420022 CCTTGTGCTCCTTCCGTTAATG 59.580 50.000 0.00 0.00 0.00 1.90
1467 1543 0.035317 ATCGCCTGTTGAAGTGCAGA 59.965 50.000 0.00 0.00 34.87 4.26
1581 1657 2.284699 CGTGGAACCCCTCCTCCT 60.285 66.667 0.00 0.00 45.64 3.69
1582 1658 2.359967 CGTGGAACCCCTCCTCCTC 61.360 68.421 0.00 0.00 45.64 3.71
1587 1663 1.869452 AACCCCTCCTCCTCCTCCT 60.869 63.158 0.00 0.00 0.00 3.69
1650 1726 2.342279 CTGCACCGGACGGAAGAA 59.658 61.111 18.80 3.17 38.96 2.52
1797 1873 4.021925 GTCCTGCCGCTGGACCTT 62.022 66.667 29.93 0.00 43.60 3.50
1798 1874 4.020617 TCCTGCCGCTGGACCTTG 62.021 66.667 14.60 0.00 0.00 3.61
1852 1928 3.106407 GTGCGGTCACGACAGAGC 61.106 66.667 1.28 3.49 44.60 4.09
2049 2134 3.081159 CTCCGACGACGACGAGGAC 62.081 68.421 20.63 1.87 41.46 3.85
2050 2135 4.157958 CCGACGACGACGAGGACC 62.158 72.222 20.63 0.00 42.66 4.46
2052 2137 4.808238 GACGACGACGAGGACCGC 62.808 72.222 15.32 0.00 43.32 5.68
2129 2214 4.158384 CCGTTTCTGGATTCGATTTTGTG 58.842 43.478 0.00 0.00 0.00 3.33
2139 2224 6.746822 TGGATTCGATTTTGTGAAATTCGATG 59.253 34.615 13.65 0.00 46.22 3.84
2141 2226 7.908082 GGATTCGATTTTGTGAAATTCGATGTA 59.092 33.333 13.65 3.97 46.22 2.29
2163 2251 6.934645 TGTAGAGTTTTGTTACTGATTCTGGG 59.065 38.462 0.00 0.00 0.00 4.45
2313 2401 2.726351 CGCCACTCCTTCCTCCTCC 61.726 68.421 0.00 0.00 0.00 4.30
2324 2412 2.711922 CCTCCTCCTCCGTTGGTCG 61.712 68.421 0.00 0.00 39.52 4.79
2357 2445 1.531578 CGCTCGATGATCGGTTCTCTA 59.468 52.381 15.48 0.00 40.88 2.43
2371 2462 1.224039 CTCTAGACGGACCGGGTCT 59.776 63.158 25.39 15.11 46.05 3.85
2372 2463 0.814812 CTCTAGACGGACCGGGTCTC 60.815 65.000 25.39 16.40 43.39 3.36
2420 2511 1.026718 GTTCTGTCTGGGATTGGGCG 61.027 60.000 0.00 0.00 0.00 6.13
2423 2514 3.728373 GTCTGGGATTGGGCGGGT 61.728 66.667 0.00 0.00 0.00 5.28
2424 2515 2.041430 TCTGGGATTGGGCGGGTA 59.959 61.111 0.00 0.00 0.00 3.69
2454 2580 1.548973 GAACGTGTGCAGTGTCCTCG 61.549 60.000 0.00 0.00 0.00 4.63
2462 2588 4.702081 AGTGTCCTCGTGCGACGC 62.702 66.667 14.19 14.19 42.21 5.19
2534 2696 2.046285 GGATTTCGTGTGGGCCCTG 61.046 63.158 25.70 10.53 0.00 4.45
2547 2709 1.371558 GCCCTGTCGTCCTTCTTGT 59.628 57.895 0.00 0.00 0.00 3.16
2570 2732 0.543749 AGCCTCAAAAGCTCGCCTAT 59.456 50.000 0.00 0.00 34.91 2.57
2620 2782 2.359975 GTAGGCTGGCCACACACC 60.360 66.667 14.39 0.41 38.92 4.16
2630 2792 4.704833 CACACACCAGCCCGGGAG 62.705 72.222 29.31 16.35 40.22 4.30
2689 2854 0.094730 CGAAACGTTGAGCCCGAATC 59.905 55.000 0.00 0.00 0.00 2.52
2720 2885 1.406539 GCAGGGCCACTTGATGTATTG 59.593 52.381 6.18 0.00 0.00 1.90
2753 2991 7.434307 CGATCGTTAGCTTCCAAGAAATTAGTA 59.566 37.037 7.03 0.00 0.00 1.82
2814 3052 9.651913 AATTAATTTTTGAACGCTGATGGTAAT 57.348 25.926 0.00 0.00 0.00 1.89
2948 3217 2.437359 ATGAGGAGCAGCAACGGC 60.437 61.111 0.00 0.00 41.61 5.68
3040 3309 1.326951 GGGCTCCTCCTCACTCAGTC 61.327 65.000 0.00 0.00 34.39 3.51
3051 3320 3.433709 CTCACTCAGTCGTGATGTGATC 58.566 50.000 0.00 0.00 42.51 2.92
3052 3321 2.819608 TCACTCAGTCGTGATGTGATCA 59.180 45.455 0.00 0.00 38.89 2.92
3059 3333 2.068519 TCGTGATGTGATCAGTGTTGC 58.931 47.619 0.00 0.00 40.53 4.17
3062 3336 2.480037 GTGATGTGATCAGTGTTGCGAA 59.520 45.455 0.00 0.00 40.53 4.70
3065 3339 3.541071 TGTGATCAGTGTTGCGAAATG 57.459 42.857 0.00 0.00 0.00 2.32
3076 3350 5.685511 AGTGTTGCGAAATGTAAATGTGAAC 59.314 36.000 0.00 0.00 0.00 3.18
3078 3352 5.457148 TGTTGCGAAATGTAAATGTGAACAC 59.543 36.000 0.00 0.00 0.00 3.32
3094 3368 4.712425 ACGTAGGTGCGTGCGGAC 62.712 66.667 7.69 7.69 43.99 4.79
3108 3382 4.086199 GTGCGGACGAATTTTGGAATTA 57.914 40.909 0.00 0.00 35.65 1.40
3115 3389 6.915843 CGGACGAATTTTGGAATTATTTAGGG 59.084 38.462 0.00 0.00 35.65 3.53
3137 3411 4.223659 GTGGCGTTTATACAACAGTTTGG 58.776 43.478 0.00 0.00 37.00 3.28
3157 3431 2.079925 GAGCCGAGTGCATCTTTCTTT 58.920 47.619 0.00 0.00 44.83 2.52
3168 3442 6.208204 AGTGCATCTTTCTTTGCTTCTATGTT 59.792 34.615 0.00 0.00 39.60 2.71
3171 3445 6.183360 GCATCTTTCTTTGCTTCTATGTTTGC 60.183 38.462 0.00 0.00 35.95 3.68
3172 3446 5.772521 TCTTTCTTTGCTTCTATGTTTGCC 58.227 37.500 0.00 0.00 0.00 4.52
3236 3510 3.262915 ACAAACTAAGCTCATGCCTCTCT 59.737 43.478 0.00 0.00 40.80 3.10
3269 3543 4.885426 CACAGTGGTGGAGCTTGT 57.115 55.556 0.00 0.00 41.45 3.16
3294 3568 2.143876 TTCTTGGAGGGGCAAATAGC 57.856 50.000 0.00 0.00 44.65 2.97
3326 3600 2.540265 CGATAGCAAGATCTGGGCTT 57.460 50.000 22.72 13.08 39.01 4.35
3341 3615 8.718656 AGATCTGGGCTTATTTTCACTAGTTAT 58.281 33.333 0.00 0.00 0.00 1.89
3437 3711 2.868583 CTCCGCCACTGATCTAACAATG 59.131 50.000 0.00 0.00 0.00 2.82
3439 3713 2.419990 CCGCCACTGATCTAACAATGGA 60.420 50.000 0.00 0.00 39.16 3.41
3464 3738 7.840342 AAGACTATATCTTGCTCAACACAAG 57.160 36.000 0.00 0.00 46.44 3.16
3465 3739 6.940739 AGACTATATCTTGCTCAACACAAGT 58.059 36.000 3.67 0.00 43.97 3.16
3466 3740 6.815641 AGACTATATCTTGCTCAACACAAGTG 59.184 38.462 0.00 0.00 43.97 3.16
3467 3741 7.526192 AGACTATATCTTGCTCAACACAAGTGT 60.526 37.037 0.00 0.00 43.97 3.55
3468 3742 5.869753 ATATCTTGCTCAACACAAGTGTC 57.130 39.130 6.28 0.00 44.13 3.67
3469 3743 3.266510 TCTTGCTCAACACAAGTGTCT 57.733 42.857 6.28 0.00 44.13 3.41
3470 3744 3.198068 TCTTGCTCAACACAAGTGTCTC 58.802 45.455 6.28 0.00 44.13 3.36
3471 3745 2.988010 TGCTCAACACAAGTGTCTCT 57.012 45.000 6.28 0.00 44.13 3.10
3903 4177 6.698359 TTCTTTCTTGGTTTTCGTTTTGTG 57.302 33.333 0.00 0.00 0.00 3.33
3904 4178 5.774630 TCTTTCTTGGTTTTCGTTTTGTGT 58.225 33.333 0.00 0.00 0.00 3.72
3905 4179 6.217294 TCTTTCTTGGTTTTCGTTTTGTGTT 58.783 32.000 0.00 0.00 0.00 3.32
3906 4180 6.702282 TCTTTCTTGGTTTTCGTTTTGTGTTT 59.298 30.769 0.00 0.00 0.00 2.83
3907 4181 6.846325 TTCTTGGTTTTCGTTTTGTGTTTT 57.154 29.167 0.00 0.00 0.00 2.43
3908 4182 6.846325 TCTTGGTTTTCGTTTTGTGTTTTT 57.154 29.167 0.00 0.00 0.00 1.94
3909 4183 6.878908 TCTTGGTTTTCGTTTTGTGTTTTTC 58.121 32.000 0.00 0.00 0.00 2.29
3910 4184 6.702282 TCTTGGTTTTCGTTTTGTGTTTTTCT 59.298 30.769 0.00 0.00 0.00 2.52
3911 4185 6.455045 TGGTTTTCGTTTTGTGTTTTTCTC 57.545 33.333 0.00 0.00 0.00 2.87
3912 4186 6.217294 TGGTTTTCGTTTTGTGTTTTTCTCT 58.783 32.000 0.00 0.00 0.00 3.10
3913 4187 6.144724 TGGTTTTCGTTTTGTGTTTTTCTCTG 59.855 34.615 0.00 0.00 0.00 3.35
3914 4188 6.144886 GGTTTTCGTTTTGTGTTTTTCTCTGT 59.855 34.615 0.00 0.00 0.00 3.41
3915 4189 7.306925 GGTTTTCGTTTTGTGTTTTTCTCTGTT 60.307 33.333 0.00 0.00 0.00 3.16
3916 4190 7.701809 TTTCGTTTTGTGTTTTTCTCTGTTT 57.298 28.000 0.00 0.00 0.00 2.83
3917 4191 7.701809 TTCGTTTTGTGTTTTTCTCTGTTTT 57.298 28.000 0.00 0.00 0.00 2.43
3918 4192 7.701809 TCGTTTTGTGTTTTTCTCTGTTTTT 57.298 28.000 0.00 0.00 0.00 1.94
3934 4208 2.943449 TTTTTCGGGTTTGTTCGCTT 57.057 40.000 0.00 0.00 0.00 4.68
3935 4209 2.943449 TTTTCGGGTTTGTTCGCTTT 57.057 40.000 0.00 0.00 0.00 3.51
3936 4210 2.478547 TTTCGGGTTTGTTCGCTTTC 57.521 45.000 0.00 0.00 0.00 2.62
3937 4211 1.670791 TTCGGGTTTGTTCGCTTTCT 58.329 45.000 0.00 0.00 0.00 2.52
3938 4212 1.670791 TCGGGTTTGTTCGCTTTCTT 58.329 45.000 0.00 0.00 0.00 2.52
3939 4213 2.018515 TCGGGTTTGTTCGCTTTCTTT 58.981 42.857 0.00 0.00 0.00 2.52
3940 4214 2.116366 CGGGTTTGTTCGCTTTCTTTG 58.884 47.619 0.00 0.00 0.00 2.77
3941 4215 2.478879 CGGGTTTGTTCGCTTTCTTTGT 60.479 45.455 0.00 0.00 0.00 2.83
3942 4216 3.517602 GGGTTTGTTCGCTTTCTTTGTT 58.482 40.909 0.00 0.00 0.00 2.83
3943 4217 3.930229 GGGTTTGTTCGCTTTCTTTGTTT 59.070 39.130 0.00 0.00 0.00 2.83
3944 4218 4.032445 GGGTTTGTTCGCTTTCTTTGTTTC 59.968 41.667 0.00 0.00 0.00 2.78
3945 4219 4.862574 GGTTTGTTCGCTTTCTTTGTTTCT 59.137 37.500 0.00 0.00 0.00 2.52
3946 4220 5.347635 GGTTTGTTCGCTTTCTTTGTTTCTT 59.652 36.000 0.00 0.00 0.00 2.52
3947 4221 6.453791 GGTTTGTTCGCTTTCTTTGTTTCTTC 60.454 38.462 0.00 0.00 0.00 2.87
3948 4222 4.339429 TGTTCGCTTTCTTTGTTTCTTCG 58.661 39.130 0.00 0.00 0.00 3.79
3949 4223 4.142773 TGTTCGCTTTCTTTGTTTCTTCGT 60.143 37.500 0.00 0.00 0.00 3.85
3950 4224 4.609691 TCGCTTTCTTTGTTTCTTCGTT 57.390 36.364 0.00 0.00 0.00 3.85
3951 4225 4.339429 TCGCTTTCTTTGTTTCTTCGTTG 58.661 39.130 0.00 0.00 0.00 4.10
3952 4226 3.482110 CGCTTTCTTTGTTTCTTCGTTGG 59.518 43.478 0.00 0.00 0.00 3.77
3953 4227 3.796717 GCTTTCTTTGTTTCTTCGTTGGG 59.203 43.478 0.00 0.00 0.00 4.12
3954 4228 4.676986 GCTTTCTTTGTTTCTTCGTTGGGT 60.677 41.667 0.00 0.00 0.00 4.51
3955 4229 5.394224 TTTCTTTGTTTCTTCGTTGGGTT 57.606 34.783 0.00 0.00 0.00 4.11
3956 4230 5.394224 TTCTTTGTTTCTTCGTTGGGTTT 57.606 34.783 0.00 0.00 0.00 3.27
3957 4231 4.989044 TCTTTGTTTCTTCGTTGGGTTTC 58.011 39.130 0.00 0.00 0.00 2.78
3958 4232 4.459685 TCTTTGTTTCTTCGTTGGGTTTCA 59.540 37.500 0.00 0.00 0.00 2.69
3959 4233 4.364415 TTGTTTCTTCGTTGGGTTTCAG 57.636 40.909 0.00 0.00 0.00 3.02
3960 4234 3.349022 TGTTTCTTCGTTGGGTTTCAGT 58.651 40.909 0.00 0.00 0.00 3.41
3961 4235 3.127895 TGTTTCTTCGTTGGGTTTCAGTG 59.872 43.478 0.00 0.00 0.00 3.66
3962 4236 1.961793 TCTTCGTTGGGTTTCAGTGG 58.038 50.000 0.00 0.00 0.00 4.00
3963 4237 1.210967 TCTTCGTTGGGTTTCAGTGGT 59.789 47.619 0.00 0.00 0.00 4.16
3964 4238 2.021457 CTTCGTTGGGTTTCAGTGGTT 58.979 47.619 0.00 0.00 0.00 3.67
3965 4239 2.131776 TCGTTGGGTTTCAGTGGTTT 57.868 45.000 0.00 0.00 0.00 3.27
3966 4240 2.448453 TCGTTGGGTTTCAGTGGTTTT 58.552 42.857 0.00 0.00 0.00 2.43
3967 4241 2.826725 TCGTTGGGTTTCAGTGGTTTTT 59.173 40.909 0.00 0.00 0.00 1.94
3998 4272 9.772973 AACACATGTCTACTTTTCATTAGTACA 57.227 29.630 0.00 0.00 0.00 2.90
3999 4273 9.204570 ACACATGTCTACTTTTCATTAGTACAC 57.795 33.333 0.00 0.00 0.00 2.90
4000 4274 9.203421 CACATGTCTACTTTTCATTAGTACACA 57.797 33.333 0.00 0.00 33.53 3.72
4001 4275 9.772973 ACATGTCTACTTTTCATTAGTACACAA 57.227 29.630 0.00 0.00 33.00 3.33
4019 4293 8.450964 AGTACACAATATACAATTTCAGTGTGC 58.549 33.333 0.00 0.00 40.19 4.57
4020 4294 7.213216 ACACAATATACAATTTCAGTGTGCA 57.787 32.000 0.00 0.00 38.91 4.57
4021 4295 7.083858 ACACAATATACAATTTCAGTGTGCAC 58.916 34.615 10.75 10.75 38.91 4.57
4022 4296 6.249050 CACAATATACAATTTCAGTGTGCACG 59.751 38.462 13.13 0.00 36.20 5.34
4023 4297 6.072728 ACAATATACAATTTCAGTGTGCACGT 60.073 34.615 13.13 2.88 36.20 4.49
4024 4298 2.473530 ACAATTTCAGTGTGCACGTG 57.526 45.000 12.28 12.28 36.20 4.49
4025 4299 2.013400 ACAATTTCAGTGTGCACGTGA 58.987 42.857 22.23 15.74 36.20 4.35
4026 4300 2.421775 ACAATTTCAGTGTGCACGTGAA 59.578 40.909 23.58 23.58 36.20 3.18
4027 4301 3.119673 ACAATTTCAGTGTGCACGTGAAA 60.120 39.130 32.57 32.57 39.85 2.69
4028 4302 2.535934 TTTCAGTGTGCACGTGAAAC 57.464 45.000 29.51 16.86 35.56 2.78
4029 4303 1.443802 TTCAGTGTGCACGTGAAACA 58.556 45.000 24.62 19.38 35.74 2.83
4030 4304 1.662517 TCAGTGTGCACGTGAAACAT 58.337 45.000 22.23 9.72 35.74 2.71
4031 4305 2.013400 TCAGTGTGCACGTGAAACATT 58.987 42.857 22.23 16.03 35.74 2.71
4032 4306 2.110990 CAGTGTGCACGTGAAACATTG 58.889 47.619 22.23 22.82 35.74 2.82
4033 4307 1.742831 AGTGTGCACGTGAAACATTGT 59.257 42.857 22.23 8.75 35.74 2.71
4034 4308 2.163412 AGTGTGCACGTGAAACATTGTT 59.837 40.909 22.23 7.35 35.74 2.83
4035 4309 2.920490 GTGTGCACGTGAAACATTGTTT 59.080 40.909 22.23 14.42 35.74 2.83
4036 4310 3.366422 GTGTGCACGTGAAACATTGTTTT 59.634 39.130 22.23 0.00 35.74 2.43
4037 4311 3.366121 TGTGCACGTGAAACATTGTTTTG 59.634 39.130 22.23 10.87 35.74 2.44
4038 4312 3.610242 GTGCACGTGAAACATTGTTTTGA 59.390 39.130 22.23 3.91 35.74 2.69
4039 4313 4.267452 GTGCACGTGAAACATTGTTTTGAT 59.733 37.500 22.23 0.79 35.74 2.57
4040 4314 5.457148 GTGCACGTGAAACATTGTTTTGATA 59.543 36.000 22.23 1.73 35.74 2.15
4041 4315 5.457148 TGCACGTGAAACATTGTTTTGATAC 59.543 36.000 22.23 11.30 35.74 2.24
4042 4316 5.457148 GCACGTGAAACATTGTTTTGATACA 59.543 36.000 22.23 6.40 35.74 2.29
4043 4317 6.143758 GCACGTGAAACATTGTTTTGATACAT 59.856 34.615 22.23 0.71 35.74 2.29
4044 4318 7.492498 CACGTGAAACATTGTTTTGATACATG 58.508 34.615 10.90 14.65 35.74 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.604578 TTTGCTACTACCGGCGAAGT 59.395 50.000 9.30 14.28 0.00 3.01
81 82 1.337447 GCTTCAATGGCACTGCACAAT 60.337 47.619 2.82 0.00 0.00 2.71
243 246 1.003355 CCACCACAAGCTCCATCGT 60.003 57.895 0.00 0.00 0.00 3.73
394 400 0.250338 GACTGGGCCTTCACGAACTT 60.250 55.000 4.53 0.00 0.00 2.66
594 600 3.503748 GGAGGAATAATCGCCATTCAAGG 59.496 47.826 6.02 0.00 34.66 3.61
660 666 9.699410 AGTATTTATATGGAGATGGAGAGAGAG 57.301 37.037 0.00 0.00 0.00 3.20
699 727 2.831742 TCGCGGCCGAGGATTACT 60.832 61.111 33.48 0.00 38.82 2.24
785 838 3.542742 GCTAGCGTCGCGTTGGAC 61.543 66.667 12.30 0.00 0.00 4.02
786 839 3.350909 ATGCTAGCGTCGCGTTGGA 62.351 57.895 12.30 7.65 0.00 3.53
787 840 2.860628 GATGCTAGCGTCGCGTTGG 61.861 63.158 20.69 4.62 0.00 3.77
789 842 1.586564 GAGATGCTAGCGTCGCGTT 60.587 57.895 27.04 12.97 37.08 4.84
790 843 2.024871 GAGATGCTAGCGTCGCGT 59.975 61.111 27.04 13.31 37.08 6.01
792 845 1.724234 CTCGAGATGCTAGCGTCGC 60.724 63.158 27.04 26.32 37.08 5.19
793 846 1.724234 GCTCGAGATGCTAGCGTCG 60.724 63.158 27.04 24.10 37.08 5.12
794 847 1.371145 GGCTCGAGATGCTAGCGTC 60.371 63.158 26.45 26.45 36.24 5.19
795 848 2.121538 TGGCTCGAGATGCTAGCGT 61.122 57.895 18.75 9.80 36.24 5.07
796 849 1.659954 GTGGCTCGAGATGCTAGCG 60.660 63.158 18.75 0.00 36.24 4.26
797 850 1.659954 CGTGGCTCGAGATGCTAGC 60.660 63.158 18.75 8.10 42.86 3.42
798 851 1.659954 GCGTGGCTCGAGATGCTAG 60.660 63.158 18.75 2.65 42.86 3.42
799 852 2.413351 GCGTGGCTCGAGATGCTA 59.587 61.111 18.75 0.00 42.86 3.49
800 853 4.862092 CGCGTGGCTCGAGATGCT 62.862 66.667 18.75 0.00 41.61 3.79
821 874 1.825474 TCAGTTCGAGGATCAAGGGAC 59.175 52.381 0.00 0.00 33.17 4.46
824 877 1.469940 CGGTCAGTTCGAGGATCAAGG 60.470 57.143 0.00 0.00 33.17 3.61
926 983 3.053455 AGCTGCGATCTATTTAAGACGC 58.947 45.455 0.00 0.00 46.13 5.19
1172 1229 5.563085 CGACGAAGAAGAAGAGGAAGAAGAA 60.563 44.000 0.00 0.00 0.00 2.52
1175 1232 3.819337 TCGACGAAGAAGAAGAGGAAGAA 59.181 43.478 0.00 0.00 0.00 2.52
1181 1238 2.685897 AGGGATCGACGAAGAAGAAGAG 59.314 50.000 0.00 0.00 0.00 2.85
1188 1245 1.001520 TGCAAAAGGGATCGACGAAGA 59.998 47.619 0.00 0.00 0.00 2.87
1189 1246 1.438651 TGCAAAAGGGATCGACGAAG 58.561 50.000 0.00 0.00 0.00 3.79
1201 1267 0.798009 CCGTTAGCCGCATGCAAAAG 60.798 55.000 19.57 8.06 44.83 2.27
1212 1278 3.887868 CCGCCATTGCCGTTAGCC 61.888 66.667 0.00 0.00 42.71 3.93
1329 1395 1.337635 TGCACCCCAAAAATGAATCGC 60.338 47.619 0.00 0.00 0.00 4.58
1331 1397 4.577875 TGATTGCACCCCAAAAATGAATC 58.422 39.130 0.00 0.00 36.92 2.52
1395 1467 3.755378 AGCACAAGGAAACAGCTAATCAG 59.245 43.478 0.00 0.00 33.06 2.90
1415 1487 3.809905 AGAATCCATTAACGGAAGGAGC 58.190 45.455 0.00 0.00 38.95 4.70
1430 1502 4.201822 GGCGATTATTAATGGCGAGAATCC 60.202 45.833 14.68 0.00 42.68 3.01
1467 1543 0.037046 CGTACCCGGCCTTGTACTTT 60.037 55.000 22.03 0.00 36.13 2.66
1598 1674 1.331214 CAAGGAAGAAGGCTTTGGCA 58.669 50.000 0.00 0.00 40.87 4.92
1839 1915 4.357947 TGCCGCTCTGTCGTGACC 62.358 66.667 0.00 0.00 0.00 4.02
1841 1917 4.056125 CCTGCCGCTCTGTCGTGA 62.056 66.667 0.00 0.00 0.00 4.35
1889 1965 4.399395 CCGGCTGCTGCTTCCTGA 62.399 66.667 15.64 0.00 39.59 3.86
2108 2193 5.029650 TCACAAAATCGAATCCAGAAACG 57.970 39.130 0.00 0.00 0.00 3.60
2129 2214 9.530129 CAGTAACAAAACTCTACATCGAATTTC 57.470 33.333 0.00 0.00 0.00 2.17
2139 2224 6.128254 GCCCAGAATCAGTAACAAAACTCTAC 60.128 42.308 0.00 0.00 0.00 2.59
2141 2226 4.762251 GCCCAGAATCAGTAACAAAACTCT 59.238 41.667 0.00 0.00 0.00 3.24
2163 2251 1.443194 CTGTTCATGCTGCCAACGC 60.443 57.895 0.00 0.00 0.00 4.84
2324 2412 0.179062 TCGAGCGAGTCTACCCTACC 60.179 60.000 0.00 0.00 0.00 3.18
2357 2445 4.341783 ACGAGACCCGGTCCGTCT 62.342 66.667 21.43 11.16 43.28 4.18
2371 2462 0.248990 AACTTAACCGACGTGCACGA 60.249 50.000 42.94 19.18 43.02 4.35
2372 2463 0.160182 GAACTTAACCGACGTGCACG 59.840 55.000 35.99 35.99 46.33 5.34
2439 2565 2.598632 GCACGAGGACACTGCACAC 61.599 63.158 0.00 0.00 0.00 3.82
2495 2623 1.733912 GACGGGCTAACCTTAAAACCG 59.266 52.381 0.00 0.00 44.86 4.44
2534 2696 1.569479 GCTGGCACAAGAAGGACGAC 61.569 60.000 0.00 0.00 38.70 4.34
2547 2709 1.968017 CGAGCTTTTGAGGCTGGCA 60.968 57.895 3.38 0.00 40.40 4.92
2570 2732 1.551883 GGTGTTCCGTTTAGGCCTAGA 59.448 52.381 13.36 5.59 40.77 2.43
2620 2782 3.151022 GGACTCTCTCCCGGGCTG 61.151 72.222 18.49 11.67 31.83 4.85
2627 2789 4.217983 TCGAAGTTAGTTTGGACTCTCTCC 59.782 45.833 0.00 0.00 39.97 3.71
2630 2792 5.405873 CCTTTCGAAGTTAGTTTGGACTCTC 59.594 44.000 0.00 0.00 37.33 3.20
2720 2885 1.584308 GAAGCTAACGATCGTGACAGC 59.416 52.381 28.62 28.62 0.00 4.40
2814 3052 0.612732 CGTGGTCAGTACCCCCAGTA 60.613 60.000 0.00 0.00 46.16 2.74
2838 3107 3.007506 TGCCTGAAAGTGGTTAAGATCGA 59.992 43.478 0.00 0.00 0.00 3.59
2965 3234 2.432628 CGCTCCTCGTGTGGTTCC 60.433 66.667 0.00 0.00 0.00 3.62
3040 3309 1.201845 CGCAACACTGATCACATCACG 60.202 52.381 0.00 0.00 35.06 4.35
3051 3320 5.211454 TCACATTTACATTTCGCAACACTG 58.789 37.500 0.00 0.00 0.00 3.66
3052 3321 5.431420 TCACATTTACATTTCGCAACACT 57.569 34.783 0.00 0.00 0.00 3.55
3059 3333 6.013085 CCTACGTGTTCACATTTACATTTCG 58.987 40.000 0.00 0.00 0.00 3.46
3062 3336 5.334569 GCACCTACGTGTTCACATTTACATT 60.335 40.000 0.00 0.00 42.39 2.71
3065 3339 3.422603 CGCACCTACGTGTTCACATTTAC 60.423 47.826 0.00 0.00 42.39 2.01
3092 3366 7.704899 CCACCCTAAATAATTCCAAAATTCGTC 59.295 37.037 0.00 0.00 36.49 4.20
3094 3368 6.478673 GCCACCCTAAATAATTCCAAAATTCG 59.521 38.462 0.00 0.00 36.49 3.34
3096 3370 6.070481 ACGCCACCCTAAATAATTCCAAAATT 60.070 34.615 0.00 0.00 38.61 1.82
3108 3382 5.254901 TGTTGTATAAACGCCACCCTAAAT 58.745 37.500 0.00 0.00 0.00 1.40
3115 3389 4.023878 TCCAAACTGTTGTATAAACGCCAC 60.024 41.667 0.00 0.00 32.40 5.01
3137 3411 1.731720 AAGAAAGATGCACTCGGCTC 58.268 50.000 0.00 0.00 45.15 4.70
3157 3431 1.541147 GCACTGGCAAACATAGAAGCA 59.459 47.619 0.00 0.00 40.72 3.91
3171 3445 0.604073 TGCCATCAACATTGCACTGG 59.396 50.000 9.06 0.00 0.00 4.00
3172 3446 2.333926 CTTGCCATCAACATTGCACTG 58.666 47.619 1.95 1.95 30.50 3.66
3236 3510 5.067273 CCACTGTGTTAAATGGTTGTAGGA 58.933 41.667 7.08 0.00 0.00 2.94
3303 3577 1.287730 CCAGATCTTGCTATCGCCGC 61.288 60.000 0.00 0.00 34.43 6.53
3437 3711 6.818644 TGTGTTGAGCAAGATATAGTCTTTCC 59.181 38.462 0.00 0.00 44.80 3.13
3439 3713 7.880195 ACTTGTGTTGAGCAAGATATAGTCTTT 59.120 33.333 11.37 0.00 44.80 2.52
3880 4154 6.217294 ACACAAAACGAAAACCAAGAAAGAA 58.783 32.000 0.00 0.00 0.00 2.52
3881 4155 5.774630 ACACAAAACGAAAACCAAGAAAGA 58.225 33.333 0.00 0.00 0.00 2.52
3882 4156 6.460664 AACACAAAACGAAAACCAAGAAAG 57.539 33.333 0.00 0.00 0.00 2.62
3883 4157 6.846325 AAACACAAAACGAAAACCAAGAAA 57.154 29.167 0.00 0.00 0.00 2.52
3884 4158 6.846325 AAAACACAAAACGAAAACCAAGAA 57.154 29.167 0.00 0.00 0.00 2.52
3885 4159 6.702282 AGAAAAACACAAAACGAAAACCAAGA 59.298 30.769 0.00 0.00 0.00 3.02
3886 4160 6.883129 AGAAAAACACAAAACGAAAACCAAG 58.117 32.000 0.00 0.00 0.00 3.61
3887 4161 6.702282 AGAGAAAAACACAAAACGAAAACCAA 59.298 30.769 0.00 0.00 0.00 3.67
3888 4162 6.144724 CAGAGAAAAACACAAAACGAAAACCA 59.855 34.615 0.00 0.00 0.00 3.67
3889 4163 6.144886 ACAGAGAAAAACACAAAACGAAAACC 59.855 34.615 0.00 0.00 0.00 3.27
3890 4164 7.100829 ACAGAGAAAAACACAAAACGAAAAC 57.899 32.000 0.00 0.00 0.00 2.43
3891 4165 7.701809 AACAGAGAAAAACACAAAACGAAAA 57.298 28.000 0.00 0.00 0.00 2.29
3892 4166 7.701809 AAACAGAGAAAAACACAAAACGAAA 57.298 28.000 0.00 0.00 0.00 3.46
3893 4167 7.701809 AAAACAGAGAAAAACACAAAACGAA 57.298 28.000 0.00 0.00 0.00 3.85
3894 4168 7.701809 AAAAACAGAGAAAAACACAAAACGA 57.298 28.000 0.00 0.00 0.00 3.85
3915 4189 2.943449 AAGCGAACAAACCCGAAAAA 57.057 40.000 0.00 0.00 0.00 1.94
3916 4190 2.424246 AGAAAGCGAACAAACCCGAAAA 59.576 40.909 0.00 0.00 0.00 2.29
3917 4191 2.018515 AGAAAGCGAACAAACCCGAAA 58.981 42.857 0.00 0.00 0.00 3.46
3918 4192 1.670791 AGAAAGCGAACAAACCCGAA 58.329 45.000 0.00 0.00 0.00 4.30
3919 4193 1.670791 AAGAAAGCGAACAAACCCGA 58.329 45.000 0.00 0.00 0.00 5.14
3920 4194 2.116366 CAAAGAAAGCGAACAAACCCG 58.884 47.619 0.00 0.00 0.00 5.28
3921 4195 3.159353 ACAAAGAAAGCGAACAAACCC 57.841 42.857 0.00 0.00 0.00 4.11
3922 4196 4.862574 AGAAACAAAGAAAGCGAACAAACC 59.137 37.500 0.00 0.00 0.00 3.27
3923 4197 6.389622 AAGAAACAAAGAAAGCGAACAAAC 57.610 33.333 0.00 0.00 0.00 2.93
3924 4198 5.285134 CGAAGAAACAAAGAAAGCGAACAAA 59.715 36.000 0.00 0.00 0.00 2.83
3925 4199 4.791163 CGAAGAAACAAAGAAAGCGAACAA 59.209 37.500 0.00 0.00 0.00 2.83
3926 4200 4.142773 ACGAAGAAACAAAGAAAGCGAACA 60.143 37.500 0.00 0.00 0.00 3.18
3927 4201 4.340263 ACGAAGAAACAAAGAAAGCGAAC 58.660 39.130 0.00 0.00 0.00 3.95
3928 4202 4.609691 ACGAAGAAACAAAGAAAGCGAA 57.390 36.364 0.00 0.00 0.00 4.70
3929 4203 4.339429 CAACGAAGAAACAAAGAAAGCGA 58.661 39.130 0.00 0.00 0.00 4.93
3930 4204 3.482110 CCAACGAAGAAACAAAGAAAGCG 59.518 43.478 0.00 0.00 0.00 4.68
3931 4205 3.796717 CCCAACGAAGAAACAAAGAAAGC 59.203 43.478 0.00 0.00 0.00 3.51
3932 4206 4.993905 ACCCAACGAAGAAACAAAGAAAG 58.006 39.130 0.00 0.00 0.00 2.62
3933 4207 5.394224 AACCCAACGAAGAAACAAAGAAA 57.606 34.783 0.00 0.00 0.00 2.52
3934 4208 5.047943 TGAAACCCAACGAAGAAACAAAGAA 60.048 36.000 0.00 0.00 0.00 2.52
3935 4209 4.459685 TGAAACCCAACGAAGAAACAAAGA 59.540 37.500 0.00 0.00 0.00 2.52
3936 4210 4.739195 TGAAACCCAACGAAGAAACAAAG 58.261 39.130 0.00 0.00 0.00 2.77
3937 4211 4.218852 ACTGAAACCCAACGAAGAAACAAA 59.781 37.500 0.00 0.00 0.00 2.83
3938 4212 3.759618 ACTGAAACCCAACGAAGAAACAA 59.240 39.130 0.00 0.00 0.00 2.83
3939 4213 3.127895 CACTGAAACCCAACGAAGAAACA 59.872 43.478 0.00 0.00 0.00 2.83
3940 4214 3.488553 CCACTGAAACCCAACGAAGAAAC 60.489 47.826 0.00 0.00 0.00 2.78
3941 4215 2.685897 CCACTGAAACCCAACGAAGAAA 59.314 45.455 0.00 0.00 0.00 2.52
3942 4216 2.294074 CCACTGAAACCCAACGAAGAA 58.706 47.619 0.00 0.00 0.00 2.52
3943 4217 1.210967 ACCACTGAAACCCAACGAAGA 59.789 47.619 0.00 0.00 0.00 2.87
3944 4218 1.675552 ACCACTGAAACCCAACGAAG 58.324 50.000 0.00 0.00 0.00 3.79
3945 4219 2.131776 AACCACTGAAACCCAACGAA 57.868 45.000 0.00 0.00 0.00 3.85
3946 4220 2.131776 AAACCACTGAAACCCAACGA 57.868 45.000 0.00 0.00 0.00 3.85
3947 4221 2.951457 AAAACCACTGAAACCCAACG 57.049 45.000 0.00 0.00 0.00 4.10
3972 4246 9.772973 TGTACTAATGAAAAGTAGACATGTGTT 57.227 29.630 1.15 0.00 30.26 3.32
3973 4247 9.204570 GTGTACTAATGAAAAGTAGACATGTGT 57.795 33.333 1.15 0.22 41.17 3.72
3974 4248 9.203421 TGTGTACTAATGAAAAGTAGACATGTG 57.797 33.333 1.15 0.00 44.26 3.21
3975 4249 9.772973 TTGTGTACTAATGAAAAGTAGACATGT 57.227 29.630 12.27 0.00 46.69 3.21
3993 4267 8.450964 GCACACTGAAATTGTATATTGTGTACT 58.549 33.333 0.00 0.00 35.94 2.73
3994 4268 8.233868 TGCACACTGAAATTGTATATTGTGTAC 58.766 33.333 0.00 0.00 35.94 2.90
3995 4269 8.233868 GTGCACACTGAAATTGTATATTGTGTA 58.766 33.333 13.17 0.00 35.94 2.90
3996 4270 7.083858 GTGCACACTGAAATTGTATATTGTGT 58.916 34.615 13.17 0.00 36.36 3.72
3997 4271 6.249050 CGTGCACACTGAAATTGTATATTGTG 59.751 38.462 18.64 0.00 36.91 3.33
3998 4272 6.072728 ACGTGCACACTGAAATTGTATATTGT 60.073 34.615 18.64 0.00 0.00 2.71
3999 4273 6.249050 CACGTGCACACTGAAATTGTATATTG 59.751 38.462 18.64 0.00 0.00 1.90
4000 4274 6.148645 TCACGTGCACACTGAAATTGTATATT 59.851 34.615 18.64 0.00 0.00 1.28
4001 4275 5.641636 TCACGTGCACACTGAAATTGTATAT 59.358 36.000 18.64 0.00 0.00 0.86
4002 4276 4.991687 TCACGTGCACACTGAAATTGTATA 59.008 37.500 18.64 0.00 0.00 1.47
4003 4277 3.812609 TCACGTGCACACTGAAATTGTAT 59.187 39.130 18.64 0.00 0.00 2.29
4004 4278 3.198872 TCACGTGCACACTGAAATTGTA 58.801 40.909 18.64 0.00 0.00 2.41
4005 4279 2.013400 TCACGTGCACACTGAAATTGT 58.987 42.857 18.64 0.00 0.00 2.71
4006 4280 2.753989 TCACGTGCACACTGAAATTG 57.246 45.000 18.64 0.00 0.00 2.32
4007 4281 3.119673 TGTTTCACGTGCACACTGAAATT 60.120 39.130 28.87 0.69 38.89 1.82
4008 4282 2.421775 TGTTTCACGTGCACACTGAAAT 59.578 40.909 28.87 2.97 38.89 2.17
4009 4283 1.807142 TGTTTCACGTGCACACTGAAA 59.193 42.857 25.27 25.27 36.77 2.69
4010 4284 1.443802 TGTTTCACGTGCACACTGAA 58.556 45.000 18.64 18.59 31.54 3.02
4011 4285 1.662517 ATGTTTCACGTGCACACTGA 58.337 45.000 18.64 13.59 0.00 3.41
4012 4286 2.110990 CAATGTTTCACGTGCACACTG 58.889 47.619 18.64 15.77 0.00 3.66
4013 4287 1.742831 ACAATGTTTCACGTGCACACT 59.257 42.857 18.64 8.79 0.00 3.55
4014 4288 2.187351 ACAATGTTTCACGTGCACAC 57.813 45.000 18.64 7.51 0.00 3.82
4015 4289 2.929531 AACAATGTTTCACGTGCACA 57.070 40.000 18.64 18.98 0.00 4.57
4016 4290 3.610242 TCAAAACAATGTTTCACGTGCAC 59.390 39.130 12.11 6.82 0.00 4.57
4017 4291 3.838120 TCAAAACAATGTTTCACGTGCA 58.162 36.364 12.11 3.40 0.00 4.57
4018 4292 5.457148 TGTATCAAAACAATGTTTCACGTGC 59.543 36.000 12.11 0.00 0.00 5.34
4019 4293 7.492498 CATGTATCAAAACAATGTTTCACGTG 58.508 34.615 12.11 9.94 32.02 4.49
4020 4294 7.621832 CATGTATCAAAACAATGTTTCACGT 57.378 32.000 12.11 6.75 32.02 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.