Multiple sequence alignment - TraesCS3A01G318500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G318500 chr3A 100.000 2306 0 0 1 2306 559623984 559626289 0.000000e+00 4259.0
1 TraesCS3A01G318500 chr3D 89.742 1550 64 40 481 1982 427082670 427081168 0.000000e+00 1893.0
2 TraesCS3A01G318500 chr3D 82.742 423 34 15 1 416 427085040 427084650 7.890000e-90 340.0
3 TraesCS3A01G318500 chr3D 81.562 320 26 15 1991 2306 22093938 22093648 1.380000e-57 233.0
4 TraesCS3A01G318500 chr3B 88.045 1330 71 38 569 1848 556715034 556713743 0.000000e+00 1495.0
5 TraesCS3A01G318500 chr3B 86.000 450 34 14 1861 2306 556690595 556690171 2.700000e-124 455.0
6 TraesCS3A01G318500 chr3B 86.994 346 26 11 1 333 556715441 556715102 2.800000e-99 372.0
7 TraesCS3A01G318500 chr3B 87.931 58 3 4 2130 2184 64250838 64250782 5.320000e-07 65.8
8 TraesCS3A01G318500 chr1B 86.061 165 16 6 1991 2149 7948393 7948230 1.100000e-38 171.0
9 TraesCS3A01G318500 chr5B 85.185 162 20 4 1991 2149 644838341 644838181 1.830000e-36 163.0
10 TraesCS3A01G318500 chr5B 97.368 38 1 0 441 478 98664933 98664896 5.320000e-07 65.8
11 TraesCS3A01G318500 chr1D 85.185 162 16 7 1998 2155 457221859 457222016 2.370000e-35 159.0
12 TraesCS3A01G318500 chr2B 76.849 311 47 12 1999 2306 214894573 214894285 3.970000e-33 152.0
13 TraesCS3A01G318500 chr2B 90.566 106 8 2 1170 1274 213998972 213998868 3.090000e-29 139.0
14 TraesCS3A01G318500 chr2B 100.000 30 0 0 448 477 78098482 78098453 3.200000e-04 56.5
15 TraesCS3A01G318500 chr2D 86.957 138 11 5 1142 1274 155973537 155973402 5.130000e-32 148.0
16 TraesCS3A01G318500 chr2D 76.997 313 39 13 1992 2304 157400657 157400378 5.130000e-32 148.0
17 TraesCS3A01G318500 chr2D 97.368 38 1 0 441 478 219266344 219266307 5.320000e-07 65.8
18 TraesCS3A01G318500 chr2A 86.957 138 11 5 1142 1274 166063554 166063419 5.130000e-32 148.0
19 TraesCS3A01G318500 chr7D 78.295 258 25 18 2053 2306 633242482 633242712 1.110000e-28 137.0
20 TraesCS3A01G318500 chr7D 100.000 33 0 0 441 473 72219252 72219284 6.880000e-06 62.1
21 TraesCS3A01G318500 chr4A 77.907 258 25 17 2053 2306 735501904 735502133 5.170000e-27 132.0
22 TraesCS3A01G318500 chr4A 93.023 43 2 1 434 476 646346604 646346645 6.880000e-06 62.1
23 TraesCS3A01G318500 chr6A 97.619 42 0 1 437 477 119753664 119753623 1.140000e-08 71.3
24 TraesCS3A01G318500 chr5D 93.023 43 3 0 440 482 543767884 543767842 1.910000e-06 63.9
25 TraesCS3A01G318500 chr4B 95.000 40 2 0 440 479 38021001 38020962 1.910000e-06 63.9
26 TraesCS3A01G318500 chr7A 91.304 46 3 1 433 478 729959552 729959596 6.880000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G318500 chr3A 559623984 559626289 2305 False 4259.0 4259 100.0000 1 2306 1 chr3A.!!$F1 2305
1 TraesCS3A01G318500 chr3D 427081168 427085040 3872 True 1116.5 1893 86.2420 1 1982 2 chr3D.!!$R2 1981
2 TraesCS3A01G318500 chr3B 556713743 556715441 1698 True 933.5 1495 87.5195 1 1848 2 chr3B.!!$R3 1847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 201 0.032815 GATAACGAGCTCCTCTGGCC 59.967 60.0 8.47 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 4079 0.109132 CAGAAAACGGGAGCCAATGC 60.109 55.0 0.0 0.0 37.95 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.134175 CTGCTCTCTCTTTCTCCCGAC 59.866 57.143 0.00 0.00 0.00 4.79
196 199 1.067821 GTGGATAACGAGCTCCTCTGG 59.932 57.143 8.47 0.00 32.47 3.86
198 201 0.032815 GATAACGAGCTCCTCTGGCC 59.967 60.000 8.47 0.00 0.00 5.36
199 202 0.397816 ATAACGAGCTCCTCTGGCCT 60.398 55.000 8.47 0.00 0.00 5.19
200 203 1.038130 TAACGAGCTCCTCTGGCCTC 61.038 60.000 8.47 0.00 0.00 4.70
201 204 2.441901 CGAGCTCCTCTGGCCTCT 60.442 66.667 8.47 0.00 0.00 3.69
202 205 2.784356 CGAGCTCCTCTGGCCTCTG 61.784 68.421 8.47 0.00 0.00 3.35
203 206 3.082701 AGCTCCTCTGGCCTCTGC 61.083 66.667 3.32 0.00 0.00 4.26
204 207 3.082701 GCTCCTCTGGCCTCTGCT 61.083 66.667 3.32 0.00 37.74 4.24
207 210 1.733402 CTCCTCTGGCCTCTGCTACG 61.733 65.000 3.32 0.00 37.74 3.51
209 214 2.759973 TCTGGCCTCTGCTACGGG 60.760 66.667 3.32 0.00 37.74 5.28
237 246 2.111460 GTGGGCCGTTGGTGTGTA 59.889 61.111 0.00 0.00 0.00 2.90
239 248 2.428622 GGGCCGTTGGTGTGTAGT 59.571 61.111 0.00 0.00 0.00 2.73
240 249 1.964373 GGGCCGTTGGTGTGTAGTG 60.964 63.158 0.00 0.00 0.00 2.74
242 251 0.033781 GGCCGTTGGTGTGTAGTGTA 59.966 55.000 0.00 0.00 0.00 2.90
244 253 1.411394 CCGTTGGTGTGTAGTGTACG 58.589 55.000 0.00 0.00 0.00 3.67
246 255 2.031245 CCGTTGGTGTGTAGTGTACGTA 60.031 50.000 0.00 0.00 0.00 3.57
247 256 3.228749 CGTTGGTGTGTAGTGTACGTAG 58.771 50.000 0.00 0.00 0.00 3.51
250 259 4.916983 TGGTGTGTAGTGTACGTAGTTT 57.083 40.909 0.00 0.00 37.78 2.66
255 264 4.229876 GTGTAGTGTACGTAGTTTGGTCC 58.770 47.826 0.00 0.00 37.78 4.46
258 267 3.921677 AGTGTACGTAGTTTGGTCCATG 58.078 45.455 0.00 0.00 37.78 3.66
276 285 3.411446 CATGGCTTGTCTGGTTAACTGA 58.589 45.455 5.42 1.84 0.00 3.41
306 315 2.002586 CTGTAAGAATCACCCTGTGCG 58.997 52.381 0.00 0.00 34.07 5.34
324 343 4.972514 TGCGTGGATGCATTAATTTACA 57.027 36.364 0.00 0.00 40.62 2.41
325 344 4.667262 TGCGTGGATGCATTAATTTACAC 58.333 39.130 0.00 0.00 40.62 2.90
327 346 3.723764 CGTGGATGCATTAATTTACACGC 59.276 43.478 7.50 1.56 42.78 5.34
328 347 4.041723 GTGGATGCATTAATTTACACGCC 58.958 43.478 0.00 0.00 0.00 5.68
329 348 3.951037 TGGATGCATTAATTTACACGCCT 59.049 39.130 0.00 0.00 0.00 5.52
330 349 4.202000 TGGATGCATTAATTTACACGCCTG 60.202 41.667 0.00 0.00 0.00 4.85
331 350 3.143807 TGCATTAATTTACACGCCTGC 57.856 42.857 0.00 0.00 0.00 4.85
332 351 2.108700 GCATTAATTTACACGCCTGCG 58.891 47.619 10.40 10.40 46.03 5.18
365 384 6.734490 TGGTCTAACCGAGCATCATGCATT 62.734 45.833 13.38 3.13 43.71 3.56
378 397 3.577667 TCATGCATTTGCGAAGAAAAGG 58.422 40.909 0.00 0.00 45.83 3.11
379 398 3.255395 TCATGCATTTGCGAAGAAAAGGA 59.745 39.130 0.00 0.00 45.83 3.36
440 2427 7.710676 ACTAGTGTGATCAATCTAGTCAAGT 57.289 36.000 23.77 12.03 38.76 3.16
441 2428 8.809468 ACTAGTGTGATCAATCTAGTCAAGTA 57.191 34.615 23.77 4.06 38.76 2.24
442 2429 8.679100 ACTAGTGTGATCAATCTAGTCAAGTAC 58.321 37.037 23.77 0.00 38.76 2.73
443 2430 7.710676 AGTGTGATCAATCTAGTCAAGTACT 57.289 36.000 0.00 0.00 42.62 2.73
444 2431 7.767261 AGTGTGATCAATCTAGTCAAGTACTC 58.233 38.462 0.00 0.00 39.80 2.59
445 2432 6.975772 GTGTGATCAATCTAGTCAAGTACTCC 59.024 42.308 0.00 0.00 39.80 3.85
446 2433 6.096987 TGTGATCAATCTAGTCAAGTACTCCC 59.903 42.308 0.00 0.00 39.80 4.30
447 2434 6.322712 GTGATCAATCTAGTCAAGTACTCCCT 59.677 42.308 0.00 0.00 39.80 4.20
448 2435 6.547880 TGATCAATCTAGTCAAGTACTCCCTC 59.452 42.308 0.00 0.00 39.80 4.30
449 2436 4.882427 TCAATCTAGTCAAGTACTCCCTCG 59.118 45.833 0.00 0.00 39.80 4.63
450 2437 4.774660 ATCTAGTCAAGTACTCCCTCGA 57.225 45.455 0.00 0.00 39.80 4.04
451 2438 4.774660 TCTAGTCAAGTACTCCCTCGAT 57.225 45.455 0.00 0.00 39.80 3.59
452 2439 5.883685 TCTAGTCAAGTACTCCCTCGATA 57.116 43.478 0.00 0.00 39.80 2.92
453 2440 6.244552 TCTAGTCAAGTACTCCCTCGATAA 57.755 41.667 0.00 0.00 39.80 1.75
454 2441 6.656902 TCTAGTCAAGTACTCCCTCGATAAA 58.343 40.000 0.00 0.00 39.80 1.40
455 2442 5.838531 AGTCAAGTACTCCCTCGATAAAG 57.161 43.478 0.00 0.00 30.33 1.85
456 2443 5.507637 AGTCAAGTACTCCCTCGATAAAGA 58.492 41.667 0.00 0.00 30.33 2.52
457 2444 5.950549 AGTCAAGTACTCCCTCGATAAAGAA 59.049 40.000 0.00 0.00 30.33 2.52
458 2445 6.436532 AGTCAAGTACTCCCTCGATAAAGAAA 59.563 38.462 0.00 0.00 30.33 2.52
459 2446 7.124448 AGTCAAGTACTCCCTCGATAAAGAAAT 59.876 37.037 0.00 0.00 30.33 2.17
460 2447 8.411683 GTCAAGTACTCCCTCGATAAAGAAATA 58.588 37.037 0.00 0.00 0.00 1.40
461 2448 9.144298 TCAAGTACTCCCTCGATAAAGAAATAT 57.856 33.333 0.00 0.00 0.00 1.28
467 2454 8.308207 ACTCCCTCGATAAAGAAATATAAGAGC 58.692 37.037 0.00 0.00 0.00 4.09
468 2455 7.313646 TCCCTCGATAAAGAAATATAAGAGCG 58.686 38.462 0.00 0.00 0.00 5.03
469 2456 7.039923 TCCCTCGATAAAGAAATATAAGAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
470 2457 7.599245 CCCTCGATAAAGAAATATAAGAGCGTT 59.401 37.037 0.00 0.00 0.00 4.84
471 2458 8.979574 CCTCGATAAAGAAATATAAGAGCGTTT 58.020 33.333 0.00 0.00 0.00 3.60
478 2465 9.745880 AAAGAAATATAAGAGCGTTTAGATCGA 57.254 29.630 0.00 0.00 40.85 3.59
479 2466 8.958175 AGAAATATAAGAGCGTTTAGATCGAG 57.042 34.615 0.00 0.00 40.85 4.04
480 2467 8.569641 AGAAATATAAGAGCGTTTAGATCGAGT 58.430 33.333 0.00 0.00 40.85 4.18
481 2468 9.823098 GAAATATAAGAGCGTTTAGATCGAGTA 57.177 33.333 0.00 0.00 40.85 2.59
482 2469 9.828852 AAATATAAGAGCGTTTAGATCGAGTAG 57.171 33.333 0.00 0.00 40.85 2.57
510 2498 2.644992 GCAGGGCGTGGTGAAAAG 59.355 61.111 9.49 0.00 0.00 2.27
514 2502 3.443588 GGCGTGGTGAAAAGCCTT 58.556 55.556 0.00 0.00 45.67 4.35
516 2504 0.318699 GGCGTGGTGAAAAGCCTTTC 60.319 55.000 0.56 0.56 45.67 2.62
520 2508 1.266989 GTGGTGAAAAGCCTTTCCTCG 59.733 52.381 5.35 0.00 40.31 4.63
523 2511 2.495084 GTGAAAAGCCTTTCCTCGACT 58.505 47.619 5.35 0.00 40.31 4.18
525 2513 3.432592 GTGAAAAGCCTTTCCTCGACTAC 59.567 47.826 5.35 0.00 40.31 2.73
527 2515 3.320673 AAAGCCTTTCCTCGACTACAG 57.679 47.619 0.00 0.00 0.00 2.74
530 2518 1.135333 GCCTTTCCTCGACTACAGGAG 59.865 57.143 0.99 0.00 41.27 3.69
537 2525 0.322648 TCGACTACAGGAGACACGGA 59.677 55.000 0.00 0.00 0.00 4.69
538 2526 0.447011 CGACTACAGGAGACACGGAC 59.553 60.000 0.00 0.00 0.00 4.79
539 2527 1.531423 GACTACAGGAGACACGGACA 58.469 55.000 0.00 0.00 0.00 4.02
540 2528 1.199558 GACTACAGGAGACACGGACAC 59.800 57.143 0.00 0.00 0.00 3.67
542 2530 1.239296 TACAGGAGACACGGACACGG 61.239 60.000 0.00 0.00 46.48 4.94
544 2532 3.986006 GGAGACACGGACACGGCA 61.986 66.667 0.00 0.00 46.48 5.69
728 2730 2.217038 GGAGTCTGGTGTGGCAGGA 61.217 63.158 0.00 0.00 0.00 3.86
733 2735 3.618780 CTGGTGTGGCAGGAGAGGC 62.619 68.421 0.00 0.00 0.00 4.70
734 2736 3.640407 GGTGTGGCAGGAGAGGCA 61.640 66.667 0.00 0.00 42.25 4.75
735 2737 2.046507 GTGTGGCAGGAGAGGCAG 60.047 66.667 0.00 0.00 45.31 4.85
736 2738 2.203832 TGTGGCAGGAGAGGCAGA 60.204 61.111 0.00 0.00 45.31 4.26
772 2778 1.303561 TCATGTGGCTGCCAAGGAC 60.304 57.895 25.23 11.69 34.18 3.85
777 2783 2.747855 GGCTGCCAAGGACGAAGG 60.748 66.667 15.17 0.00 0.00 3.46
779 2785 1.302511 GCTGCCAAGGACGAAGGAA 60.303 57.895 0.00 0.00 0.00 3.36
780 2786 1.301677 GCTGCCAAGGACGAAGGAAG 61.302 60.000 0.00 0.00 0.00 3.46
781 2787 0.321671 CTGCCAAGGACGAAGGAAGA 59.678 55.000 0.00 0.00 28.69 2.87
782 2788 0.762418 TGCCAAGGACGAAGGAAGAA 59.238 50.000 0.00 0.00 0.00 2.52
783 2789 1.157585 GCCAAGGACGAAGGAAGAAC 58.842 55.000 0.00 0.00 0.00 3.01
784 2790 1.542547 GCCAAGGACGAAGGAAGAACA 60.543 52.381 0.00 0.00 0.00 3.18
785 2791 2.417719 CCAAGGACGAAGGAAGAACAG 58.582 52.381 0.00 0.00 0.00 3.16
786 2792 2.224305 CCAAGGACGAAGGAAGAACAGT 60.224 50.000 0.00 0.00 0.00 3.55
787 2793 2.802816 CAAGGACGAAGGAAGAACAGTG 59.197 50.000 0.00 0.00 0.00 3.66
788 2794 2.040178 AGGACGAAGGAAGAACAGTGT 58.960 47.619 0.00 0.00 0.00 3.55
789 2795 2.135933 GGACGAAGGAAGAACAGTGTG 58.864 52.381 0.00 0.00 0.00 3.82
790 2796 1.527311 GACGAAGGAAGAACAGTGTGC 59.473 52.381 0.00 0.00 0.00 4.57
791 2797 0.508641 CGAAGGAAGAACAGTGTGCG 59.491 55.000 0.00 0.00 0.00 5.34
792 2798 1.583054 GAAGGAAGAACAGTGTGCGT 58.417 50.000 0.00 0.00 0.00 5.24
793 2799 2.750948 GAAGGAAGAACAGTGTGCGTA 58.249 47.619 0.00 0.00 0.00 4.42
827 2833 1.197721 CCAAGTGTAAAGCAAGCCGAG 59.802 52.381 0.00 0.00 0.00 4.63
828 2834 0.875059 AAGTGTAAAGCAAGCCGAGC 59.125 50.000 0.00 0.00 0.00 5.03
829 2835 1.132640 GTGTAAAGCAAGCCGAGCG 59.867 57.895 0.00 0.00 37.01 5.03
830 2836 1.005512 TGTAAAGCAAGCCGAGCGA 60.006 52.632 0.00 0.00 37.01 4.93
831 2837 1.014044 TGTAAAGCAAGCCGAGCGAG 61.014 55.000 0.00 0.00 37.01 5.03
861 2874 3.186047 CTGGTCGCTTTACCGCCG 61.186 66.667 0.00 0.00 42.91 6.46
901 2914 1.376683 ATTACACGCGCACCACCAT 60.377 52.632 5.73 0.00 0.00 3.55
902 2915 0.108089 ATTACACGCGCACCACCATA 60.108 50.000 5.73 0.00 0.00 2.74
911 2924 0.538516 GCACCACCATAACCACCACA 60.539 55.000 0.00 0.00 0.00 4.17
912 2925 1.243902 CACCACCATAACCACCACAC 58.756 55.000 0.00 0.00 0.00 3.82
915 2928 1.533625 CACCATAACCACCACACCAG 58.466 55.000 0.00 0.00 0.00 4.00
1065 3078 1.082169 CAACATCAACACCGTGCCG 60.082 57.895 0.00 0.00 0.00 5.69
1076 3089 0.683504 ACCGTGCCGAGGAAGAGTAT 60.684 55.000 0.00 0.00 0.00 2.12
1086 3099 3.767309 AGGAAGAGTATGTCCTCCTGT 57.233 47.619 0.00 0.00 40.38 4.00
1087 3100 4.883021 AGGAAGAGTATGTCCTCCTGTA 57.117 45.455 0.00 0.00 40.38 2.74
1088 3101 5.411103 AGGAAGAGTATGTCCTCCTGTAT 57.589 43.478 0.00 0.00 40.38 2.29
1089 3102 5.782925 AGGAAGAGTATGTCCTCCTGTATT 58.217 41.667 0.00 0.00 40.38 1.89
1090 3103 5.836358 AGGAAGAGTATGTCCTCCTGTATTC 59.164 44.000 0.00 0.00 40.38 1.75
1091 3104 5.278561 GGAAGAGTATGTCCTCCTGTATTCG 60.279 48.000 0.00 0.00 31.53 3.34
1092 3105 4.794334 AGAGTATGTCCTCCTGTATTCGT 58.206 43.478 0.00 0.00 31.53 3.85
1093 3106 4.580995 AGAGTATGTCCTCCTGTATTCGTG 59.419 45.833 0.00 0.00 31.53 4.35
1094 3107 4.279145 AGTATGTCCTCCTGTATTCGTGT 58.721 43.478 0.00 0.00 0.00 4.49
1097 3110 5.670792 ATGTCCTCCTGTATTCGTGTTTA 57.329 39.130 0.00 0.00 0.00 2.01
1098 3111 4.813027 TGTCCTCCTGTATTCGTGTTTAC 58.187 43.478 0.00 0.00 0.00 2.01
1099 3112 4.281435 TGTCCTCCTGTATTCGTGTTTACA 59.719 41.667 0.00 0.00 0.00 2.41
1101 3114 5.291128 GTCCTCCTGTATTCGTGTTTACATG 59.709 44.000 0.00 0.00 0.00 3.21
1103 3116 4.570930 TCCTGTATTCGTGTTTACATGCA 58.429 39.130 0.00 0.00 33.05 3.96
1104 3117 5.182487 TCCTGTATTCGTGTTTACATGCAT 58.818 37.500 0.00 0.00 33.05 3.96
1105 3118 6.342111 TCCTGTATTCGTGTTTACATGCATA 58.658 36.000 0.00 0.00 33.05 3.14
1107 3120 7.334671 TCCTGTATTCGTGTTTACATGCATAAA 59.665 33.333 0.00 0.00 33.05 1.40
1113 3126 6.482835 TCGTGTTTACATGCATAAATACAGC 58.517 36.000 17.00 7.56 36.48 4.40
1114 3127 5.681105 CGTGTTTACATGCATAAATACAGCC 59.319 40.000 17.00 3.64 36.48 4.85
1115 3128 6.458206 CGTGTTTACATGCATAAATACAGCCT 60.458 38.462 17.00 0.00 36.48 4.58
1116 3129 7.257722 GTGTTTACATGCATAAATACAGCCTT 58.742 34.615 13.78 0.00 36.61 4.35
1117 3130 7.759433 GTGTTTACATGCATAAATACAGCCTTT 59.241 33.333 13.78 0.00 36.61 3.11
1136 3149 3.924918 TTGTCTCTGTTCTTCTCTCCG 57.075 47.619 0.00 0.00 0.00 4.63
1149 3162 1.743958 TCTCTCCGGTTTCTGATCGTC 59.256 52.381 0.00 0.00 0.00 4.20
1266 3281 4.131088 GTCGAGTCCCACGGCCTC 62.131 72.222 0.00 0.00 0.00 4.70
1415 3431 2.242196 CCATGGGAGGTGAACCAGTAAT 59.758 50.000 2.85 0.00 40.67 1.89
1496 3514 1.084370 GTTCATCTGGCCTTCGTCCG 61.084 60.000 3.32 0.00 0.00 4.79
1679 3707 5.539955 CCCTTTAATTCATCCCCATTACCAG 59.460 44.000 0.00 0.00 0.00 4.00
1680 3708 5.539955 CCTTTAATTCATCCCCATTACCAGG 59.460 44.000 0.00 0.00 0.00 4.45
1681 3709 3.618120 AATTCATCCCCATTACCAGGG 57.382 47.619 0.00 0.00 46.36 4.45
1824 3889 4.142966 GGAGCGTACACTGTTCAAATAACC 60.143 45.833 0.00 0.00 0.00 2.85
1835 3901 7.434307 CACTGTTCAAATAACCGATCGTAGTAT 59.566 37.037 15.09 5.57 0.00 2.12
1849 3915 2.478031 CGTAGTATCAAGTGTCTGCGCT 60.478 50.000 9.73 0.00 36.97 5.92
1850 3916 2.285827 AGTATCAAGTGTCTGCGCTC 57.714 50.000 9.73 0.00 33.77 5.03
1851 3917 1.821753 AGTATCAAGTGTCTGCGCTCT 59.178 47.619 9.73 0.00 33.77 4.09
1852 3918 1.923204 GTATCAAGTGTCTGCGCTCTG 59.077 52.381 9.73 0.00 33.77 3.35
1853 3919 1.018226 ATCAAGTGTCTGCGCTCTGC 61.018 55.000 9.73 0.00 46.70 4.26
1872 3938 1.621107 CGGTGCATCATTTGTTGCTC 58.379 50.000 13.16 10.01 40.41 4.26
1876 3942 3.553508 GGTGCATCATTTGTTGCTCTGTT 60.554 43.478 13.16 0.00 40.41 3.16
1877 3943 3.671928 GTGCATCATTTGTTGCTCTGTTC 59.328 43.478 13.16 0.00 40.41 3.18
1880 3946 4.620184 GCATCATTTGTTGCTCTGTTCTTC 59.380 41.667 6.40 0.00 37.66 2.87
1883 3949 4.516698 TCATTTGTTGCTCTGTTCTTCTCC 59.483 41.667 0.00 0.00 0.00 3.71
1900 3966 3.115390 TCTCCTCTTCCAATAACTGGGG 58.885 50.000 0.00 0.00 46.44 4.96
1902 3968 3.265489 TCCTCTTCCAATAACTGGGGTT 58.735 45.455 0.00 0.00 46.44 4.11
1903 3969 4.440808 TCCTCTTCCAATAACTGGGGTTA 58.559 43.478 0.00 0.00 46.44 2.85
1904 3970 5.043762 TCCTCTTCCAATAACTGGGGTTAT 58.956 41.667 0.00 0.00 46.81 1.89
1905 3971 5.104109 TCCTCTTCCAATAACTGGGGTTATG 60.104 44.000 2.74 0.00 44.87 1.90
1907 3973 6.410853 CCTCTTCCAATAACTGGGGTTATGAT 60.411 42.308 2.74 0.00 44.87 2.45
1908 3974 6.601332 TCTTCCAATAACTGGGGTTATGATC 58.399 40.000 2.74 0.00 44.87 2.92
1909 3975 5.985175 TCCAATAACTGGGGTTATGATCA 57.015 39.130 0.00 0.00 44.87 2.92
1910 3976 5.690865 TCCAATAACTGGGGTTATGATCAC 58.309 41.667 0.00 0.00 44.87 3.06
1911 3977 5.431731 TCCAATAACTGGGGTTATGATCACT 59.568 40.000 0.00 0.00 44.87 3.41
1957 4023 1.423921 TCTTCTTTCTGGTTGGGGTCC 59.576 52.381 0.00 0.00 0.00 4.46
1969 4035 2.670148 GGGGTCCTGCGGATGACTT 61.670 63.158 11.74 0.00 32.73 3.01
1982 4048 3.366396 GGATGACTTGTGAGACCTCCTA 58.634 50.000 0.00 0.00 32.55 2.94
1983 4049 3.383185 GGATGACTTGTGAGACCTCCTAG 59.617 52.174 0.00 0.00 32.55 3.02
1984 4050 2.171840 TGACTTGTGAGACCTCCTAGC 58.828 52.381 0.00 0.00 0.00 3.42
1985 4051 1.478916 GACTTGTGAGACCTCCTAGCC 59.521 57.143 0.00 0.00 0.00 3.93
1986 4052 1.203187 ACTTGTGAGACCTCCTAGCCA 60.203 52.381 0.00 0.00 0.00 4.75
1987 4053 1.480137 CTTGTGAGACCTCCTAGCCAG 59.520 57.143 0.00 0.00 0.00 4.85
1988 4054 0.324738 TGTGAGACCTCCTAGCCAGG 60.325 60.000 0.00 0.00 44.17 4.45
1996 4062 4.522971 CCTAGCCAGGAAAGCGAC 57.477 61.111 0.00 0.00 45.91 5.19
1997 4063 1.901085 CCTAGCCAGGAAAGCGACT 59.099 57.895 0.00 0.00 45.91 4.18
1998 4064 0.250513 CCTAGCCAGGAAAGCGACTT 59.749 55.000 0.00 0.00 45.91 3.01
1999 4065 1.339151 CCTAGCCAGGAAAGCGACTTT 60.339 52.381 0.00 4.80 45.91 2.66
2000 4066 2.427506 CTAGCCAGGAAAGCGACTTTT 58.572 47.619 6.34 0.00 33.49 2.27
2001 4067 1.692411 AGCCAGGAAAGCGACTTTTT 58.308 45.000 6.34 0.00 33.49 1.94
2002 4068 1.338020 AGCCAGGAAAGCGACTTTTTG 59.662 47.619 6.34 7.91 33.49 2.44
2003 4069 1.067060 GCCAGGAAAGCGACTTTTTGT 59.933 47.619 6.34 0.00 33.49 2.83
2004 4070 2.481276 GCCAGGAAAGCGACTTTTTGTT 60.481 45.455 6.34 0.00 33.49 2.83
2005 4071 3.115554 CCAGGAAAGCGACTTTTTGTTG 58.884 45.455 6.34 4.08 33.49 3.33
2006 4072 3.115554 CAGGAAAGCGACTTTTTGTTGG 58.884 45.455 6.34 0.00 33.49 3.77
2007 4073 3.020984 AGGAAAGCGACTTTTTGTTGGA 58.979 40.909 6.34 0.00 33.49 3.53
2008 4074 3.113322 GGAAAGCGACTTTTTGTTGGAC 58.887 45.455 6.34 0.00 33.49 4.02
2009 4075 2.468532 AAGCGACTTTTTGTTGGACG 57.531 45.000 0.00 0.00 0.00 4.79
2010 4076 0.661020 AGCGACTTTTTGTTGGACGG 59.339 50.000 0.00 0.00 0.00 4.79
2011 4077 0.317519 GCGACTTTTTGTTGGACGGG 60.318 55.000 0.00 0.00 0.00 5.28
2012 4078 0.309612 CGACTTTTTGTTGGACGGGG 59.690 55.000 0.00 0.00 0.00 5.73
2013 4079 0.671796 GACTTTTTGTTGGACGGGGG 59.328 55.000 0.00 0.00 0.00 5.40
2014 4080 1.365999 CTTTTTGTTGGACGGGGGC 59.634 57.895 0.00 0.00 0.00 5.80
2015 4081 1.381327 TTTTTGTTGGACGGGGGCA 60.381 52.632 0.00 0.00 0.00 5.36
2016 4082 0.760945 TTTTTGTTGGACGGGGGCAT 60.761 50.000 0.00 0.00 0.00 4.40
2017 4083 0.760945 TTTTGTTGGACGGGGGCATT 60.761 50.000 0.00 0.00 0.00 3.56
2018 4084 1.467678 TTTGTTGGACGGGGGCATTG 61.468 55.000 0.00 0.00 0.00 2.82
2019 4085 3.068064 GTTGGACGGGGGCATTGG 61.068 66.667 0.00 0.00 0.00 3.16
2028 4094 2.679996 GGGCATTGGCTCCCGTTT 60.680 61.111 10.31 0.00 40.87 3.60
2029 4095 2.282783 GGGCATTGGCTCCCGTTTT 61.283 57.895 10.31 0.00 40.87 2.43
2030 4096 1.215382 GGCATTGGCTCCCGTTTTC 59.785 57.895 2.42 0.00 40.87 2.29
2031 4097 1.250840 GGCATTGGCTCCCGTTTTCT 61.251 55.000 2.42 0.00 40.87 2.52
2032 4098 0.109132 GCATTGGCTCCCGTTTTCTG 60.109 55.000 0.00 0.00 36.96 3.02
2033 4099 1.533625 CATTGGCTCCCGTTTTCTGA 58.466 50.000 0.00 0.00 0.00 3.27
2034 4100 1.885887 CATTGGCTCCCGTTTTCTGAA 59.114 47.619 0.00 0.00 0.00 3.02
2035 4101 2.060050 TTGGCTCCCGTTTTCTGAAA 57.940 45.000 0.00 0.00 0.00 2.69
2036 4102 2.286365 TGGCTCCCGTTTTCTGAAAT 57.714 45.000 3.31 0.00 0.00 2.17
2037 4103 1.885887 TGGCTCCCGTTTTCTGAAATG 59.114 47.619 3.31 0.20 0.00 2.32
2038 4104 2.159382 GGCTCCCGTTTTCTGAAATGA 58.841 47.619 3.31 0.00 34.37 2.57
2039 4105 2.755103 GGCTCCCGTTTTCTGAAATGAT 59.245 45.455 3.31 0.00 34.37 2.45
2040 4106 3.193479 GGCTCCCGTTTTCTGAAATGATT 59.807 43.478 3.31 0.00 34.37 2.57
2041 4107 4.415735 GCTCCCGTTTTCTGAAATGATTC 58.584 43.478 3.31 0.00 34.37 2.52
2042 4108 4.082787 GCTCCCGTTTTCTGAAATGATTCA 60.083 41.667 3.31 0.00 43.18 2.57
2043 4109 5.564651 GCTCCCGTTTTCTGAAATGATTCAA 60.565 40.000 3.31 0.00 44.64 2.69
2044 4110 6.398234 TCCCGTTTTCTGAAATGATTCAAA 57.602 33.333 3.31 0.00 44.64 2.69
2045 4111 6.810911 TCCCGTTTTCTGAAATGATTCAAAA 58.189 32.000 3.31 0.00 44.64 2.44
2046 4112 7.268586 TCCCGTTTTCTGAAATGATTCAAAAA 58.731 30.769 3.31 0.00 44.64 1.94
2107 4173 9.553418 TGTGAAAAATTGTACATATTCACGATG 57.447 29.630 23.59 0.00 45.84 3.84
2108 4174 9.009327 GTGAAAAATTGTACATATTCACGATGG 57.991 33.333 19.03 0.00 37.84 3.51
2109 4175 8.951243 TGAAAAATTGTACATATTCACGATGGA 58.049 29.630 0.00 0.00 0.00 3.41
2110 4176 9.950680 GAAAAATTGTACATATTCACGATGGAT 57.049 29.630 0.00 0.00 0.00 3.41
2111 4177 9.950680 AAAAATTGTACATATTCACGATGGATC 57.049 29.630 0.00 0.00 0.00 3.36
2112 4178 8.908786 AAATTGTACATATTCACGATGGATCT 57.091 30.769 0.00 0.00 0.00 2.75
2113 4179 7.895975 ATTGTACATATTCACGATGGATCTG 57.104 36.000 0.00 0.00 0.00 2.90
2114 4180 6.405278 TGTACATATTCACGATGGATCTGT 57.595 37.500 0.00 0.00 0.00 3.41
2115 4181 6.215845 TGTACATATTCACGATGGATCTGTG 58.784 40.000 0.00 0.00 34.77 3.66
2116 4182 5.535753 ACATATTCACGATGGATCTGTGA 57.464 39.130 9.01 9.01 38.00 3.58
2117 4183 5.917462 ACATATTCACGATGGATCTGTGAA 58.083 37.500 19.64 19.64 45.06 3.18
2119 4185 6.994496 ACATATTCACGATGGATCTGTGAATT 59.006 34.615 26.36 18.28 46.21 2.17
2120 4186 7.500227 ACATATTCACGATGGATCTGTGAATTT 59.500 33.333 26.36 20.95 46.21 1.82
2121 4187 6.764308 ATTCACGATGGATCTGTGAATTTT 57.236 33.333 21.26 10.55 46.21 1.82
2122 4188 7.864108 ATTCACGATGGATCTGTGAATTTTA 57.136 32.000 21.26 8.43 46.21 1.52
2123 4189 6.908870 TCACGATGGATCTGTGAATTTTAG 57.091 37.500 10.08 0.00 37.38 1.85
2124 4190 6.406370 TCACGATGGATCTGTGAATTTTAGT 58.594 36.000 10.08 0.00 37.38 2.24
2125 4191 6.878923 TCACGATGGATCTGTGAATTTTAGTT 59.121 34.615 10.08 0.00 37.38 2.24
2126 4192 7.064609 TCACGATGGATCTGTGAATTTTAGTTC 59.935 37.037 10.08 0.00 37.38 3.01
2127 4193 6.878923 ACGATGGATCTGTGAATTTTAGTTCA 59.121 34.615 0.00 0.00 35.84 3.18
2128 4194 7.390440 ACGATGGATCTGTGAATTTTAGTTCAA 59.610 33.333 0.00 0.00 39.61 2.69
2129 4195 8.236586 CGATGGATCTGTGAATTTTAGTTCAAA 58.763 33.333 0.00 0.00 39.61 2.69
2130 4196 9.912634 GATGGATCTGTGAATTTTAGTTCAAAA 57.087 29.630 0.00 0.00 39.61 2.44
2148 4214 8.720562 AGTTCAAAAATATTATGGTTTGCAAGC 58.279 29.630 4.46 4.46 32.27 4.01
2149 4215 8.720562 GTTCAAAAATATTATGGTTTGCAAGCT 58.279 29.630 13.27 0.00 32.27 3.74
2150 4216 8.254178 TCAAAAATATTATGGTTTGCAAGCTG 57.746 30.769 13.27 0.00 32.27 4.24
2151 4217 6.667007 AAAATATTATGGTTTGCAAGCTGC 57.333 33.333 13.27 0.00 45.29 5.25
2160 4226 4.810730 GCAAGCTGCACACACAAA 57.189 50.000 1.02 0.00 44.26 2.83
2161 4227 3.047752 GCAAGCTGCACACACAAAA 57.952 47.368 1.02 0.00 44.26 2.44
2162 4228 1.357907 GCAAGCTGCACACACAAAAA 58.642 45.000 1.02 0.00 44.26 1.94
2199 4265 3.726291 AAAAATCCTGGTCCAACAACG 57.274 42.857 0.00 0.00 0.00 4.10
2200 4266 2.649531 AAATCCTGGTCCAACAACGA 57.350 45.000 0.00 0.00 0.00 3.85
2201 4267 2.649531 AATCCTGGTCCAACAACGAA 57.350 45.000 0.00 0.00 0.00 3.85
2202 4268 2.649531 ATCCTGGTCCAACAACGAAA 57.350 45.000 0.00 0.00 0.00 3.46
2203 4269 2.421751 TCCTGGTCCAACAACGAAAA 57.578 45.000 0.00 0.00 0.00 2.29
2204 4270 2.724454 TCCTGGTCCAACAACGAAAAA 58.276 42.857 0.00 0.00 0.00 1.94
2224 4290 3.317603 AAAGATTGGCCCATTTTCACG 57.682 42.857 0.00 0.00 0.00 4.35
2225 4291 1.923356 AGATTGGCCCATTTTCACGT 58.077 45.000 0.00 0.00 0.00 4.49
2226 4292 3.080300 AGATTGGCCCATTTTCACGTA 57.920 42.857 0.00 0.00 0.00 3.57
2227 4293 3.631250 AGATTGGCCCATTTTCACGTAT 58.369 40.909 0.00 0.00 0.00 3.06
2228 4294 4.787551 AGATTGGCCCATTTTCACGTATA 58.212 39.130 0.00 0.00 0.00 1.47
2229 4295 5.385198 AGATTGGCCCATTTTCACGTATAT 58.615 37.500 0.00 0.00 0.00 0.86
2230 4296 6.539173 AGATTGGCCCATTTTCACGTATATA 58.461 36.000 0.00 0.00 0.00 0.86
2231 4297 7.175104 AGATTGGCCCATTTTCACGTATATAT 58.825 34.615 0.00 0.00 0.00 0.86
2232 4298 7.669722 AGATTGGCCCATTTTCACGTATATATT 59.330 33.333 0.00 0.00 0.00 1.28
2233 4299 7.589958 TTGGCCCATTTTCACGTATATATTT 57.410 32.000 0.00 0.00 0.00 1.40
2234 4300 6.976088 TGGCCCATTTTCACGTATATATTTG 58.024 36.000 0.00 0.00 0.00 2.32
2235 4301 6.547880 TGGCCCATTTTCACGTATATATTTGT 59.452 34.615 0.00 0.00 0.00 2.83
2236 4302 7.068839 TGGCCCATTTTCACGTATATATTTGTT 59.931 33.333 0.00 0.00 0.00 2.83
2237 4303 7.923878 GGCCCATTTTCACGTATATATTTGTTT 59.076 33.333 0.00 0.00 0.00 2.83
2238 4304 9.308318 GCCCATTTTCACGTATATATTTGTTTT 57.692 29.630 0.00 0.00 0.00 2.43
2252 4318 4.902443 TTTGTTTTCATTGTCTACGCCA 57.098 36.364 0.00 0.00 0.00 5.69
2253 4319 3.889196 TGTTTTCATTGTCTACGCCAC 57.111 42.857 0.00 0.00 0.00 5.01
2254 4320 3.472652 TGTTTTCATTGTCTACGCCACT 58.527 40.909 0.00 0.00 0.00 4.00
2255 4321 3.880490 TGTTTTCATTGTCTACGCCACTT 59.120 39.130 0.00 0.00 0.00 3.16
2256 4322 5.057819 TGTTTTCATTGTCTACGCCACTTA 58.942 37.500 0.00 0.00 0.00 2.24
2257 4323 5.703592 TGTTTTCATTGTCTACGCCACTTAT 59.296 36.000 0.00 0.00 0.00 1.73
2258 4324 5.794687 TTTCATTGTCTACGCCACTTATG 57.205 39.130 0.00 0.00 0.00 1.90
2259 4325 4.729227 TCATTGTCTACGCCACTTATGA 57.271 40.909 0.00 0.00 0.00 2.15
2260 4326 5.079689 TCATTGTCTACGCCACTTATGAA 57.920 39.130 0.00 0.00 0.00 2.57
2261 4327 5.483811 TCATTGTCTACGCCACTTATGAAA 58.516 37.500 0.00 0.00 0.00 2.69
2262 4328 5.580691 TCATTGTCTACGCCACTTATGAAAG 59.419 40.000 0.00 0.00 38.77 2.62
2264 4330 5.648178 TGTCTACGCCACTTATGAAAGTA 57.352 39.130 0.00 0.00 44.28 2.24
2265 4331 6.216801 TGTCTACGCCACTTATGAAAGTAT 57.783 37.500 0.00 0.00 44.28 2.12
2266 4332 7.337480 TGTCTACGCCACTTATGAAAGTATA 57.663 36.000 0.00 0.00 44.28 1.47
2267 4333 7.948357 TGTCTACGCCACTTATGAAAGTATAT 58.052 34.615 0.00 0.00 44.28 0.86
2268 4334 8.418662 TGTCTACGCCACTTATGAAAGTATATT 58.581 33.333 0.00 0.00 44.28 1.28
2269 4335 8.700644 GTCTACGCCACTTATGAAAGTATATTG 58.299 37.037 0.00 0.00 44.28 1.90
2270 4336 8.418662 TCTACGCCACTTATGAAAGTATATTGT 58.581 33.333 0.00 0.00 44.28 2.71
2271 4337 7.478520 ACGCCACTTATGAAAGTATATTGTC 57.521 36.000 0.00 0.00 44.28 3.18
2272 4338 7.045416 ACGCCACTTATGAAAGTATATTGTCA 58.955 34.615 0.00 0.00 44.28 3.58
2273 4339 7.715249 ACGCCACTTATGAAAGTATATTGTCAT 59.285 33.333 6.21 6.21 44.28 3.06
2274 4340 8.011673 CGCCACTTATGAAAGTATATTGTCATG 58.988 37.037 10.42 0.00 44.28 3.07
2275 4341 9.056005 GCCACTTATGAAAGTATATTGTCATGA 57.944 33.333 10.42 2.66 44.28 3.07
2291 4357 8.647143 ATTGTCATGAAAATTTTCTTCAACGT 57.353 26.923 26.73 13.01 36.43 3.99
2292 4358 7.448588 TGTCATGAAAATTTTCTTCAACGTG 57.551 32.000 26.73 14.25 36.43 4.49
2293 4359 7.032580 TGTCATGAAAATTTTCTTCAACGTGT 58.967 30.769 26.73 4.31 36.43 4.49
2294 4360 7.219917 TGTCATGAAAATTTTCTTCAACGTGTC 59.780 33.333 26.73 12.58 36.43 3.67
2295 4361 7.219917 GTCATGAAAATTTTCTTCAACGTGTCA 59.780 33.333 26.73 7.68 36.43 3.58
2296 4362 7.920151 TCATGAAAATTTTCTTCAACGTGTCAT 59.080 29.630 26.73 9.46 36.43 3.06
2297 4363 9.179552 CATGAAAATTTTCTTCAACGTGTCATA 57.820 29.630 26.73 6.42 36.43 2.15
2298 4364 9.912634 ATGAAAATTTTCTTCAACGTGTCATAT 57.087 25.926 26.73 8.22 36.43 1.78
2299 4365 9.179552 TGAAAATTTTCTTCAACGTGTCATATG 57.820 29.630 26.73 0.00 38.02 1.78
2300 4366 9.180678 GAAAATTTTCTTCAACGTGTCATATGT 57.819 29.630 21.21 0.00 34.41 2.29
2301 4367 8.506140 AAATTTTCTTCAACGTGTCATATGTG 57.494 30.769 1.90 0.00 0.00 3.21
2302 4368 6.612247 TTTTCTTCAACGTGTCATATGTGT 57.388 33.333 1.90 0.00 0.00 3.72
2303 4369 7.716768 TTTTCTTCAACGTGTCATATGTGTA 57.283 32.000 1.90 0.00 0.00 2.90
2304 4370 7.899178 TTTCTTCAACGTGTCATATGTGTAT 57.101 32.000 1.90 0.00 0.00 2.29
2305 4371 7.899178 TTCTTCAACGTGTCATATGTGTATT 57.101 32.000 1.90 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.178276 GTCGGGAGAAAGAGAGAGCA 58.822 55.000 0.00 0.00 42.89 4.26
30 31 1.514443 GTCGCGTCGGGAGAAAGAG 60.514 63.158 12.80 0.00 42.89 2.85
143 145 0.322546 AAAATCCCCGTGAGCTCCAC 60.323 55.000 12.15 8.64 42.30 4.02
191 194 2.790791 CCCGTAGCAGAGGCCAGAG 61.791 68.421 5.01 0.00 42.56 3.35
192 195 2.759973 CCCGTAGCAGAGGCCAGA 60.760 66.667 5.01 0.00 42.56 3.86
194 197 4.392166 TCCCCGTAGCAGAGGCCA 62.392 66.667 5.01 0.00 42.56 5.36
196 199 2.442272 TCTCCCCGTAGCAGAGGC 60.442 66.667 0.00 0.00 41.61 4.70
198 201 2.840066 CGCTCTCCCCGTAGCAGAG 61.840 68.421 0.00 0.00 38.70 3.35
199 202 2.829003 CGCTCTCCCCGTAGCAGA 60.829 66.667 0.00 0.00 38.70 4.26
200 203 3.127352 GACGCTCTCCCCGTAGCAG 62.127 68.421 0.00 0.00 39.30 4.24
201 204 3.138798 GACGCTCTCCCCGTAGCA 61.139 66.667 0.00 0.00 39.30 3.49
202 205 4.253257 CGACGCTCTCCCCGTAGC 62.253 72.222 0.00 0.00 39.30 3.58
203 206 3.584052 CCGACGCTCTCCCCGTAG 61.584 72.222 0.00 0.00 39.30 3.51
204 207 4.415150 ACCGACGCTCTCCCCGTA 62.415 66.667 0.00 0.00 39.30 4.02
223 228 0.033781 TACACTACACACCAACGGCC 59.966 55.000 0.00 0.00 0.00 6.13
237 246 3.306502 CCATGGACCAAACTACGTACACT 60.307 47.826 5.56 0.00 0.00 3.55
239 248 2.613474 GCCATGGACCAAACTACGTACA 60.613 50.000 18.40 0.00 0.00 2.90
240 249 2.004733 GCCATGGACCAAACTACGTAC 58.995 52.381 18.40 0.00 0.00 3.67
242 251 0.690762 AGCCATGGACCAAACTACGT 59.309 50.000 18.40 0.00 0.00 3.57
244 253 2.488153 GACAAGCCATGGACCAAACTAC 59.512 50.000 18.40 0.00 0.00 2.73
246 255 1.145738 AGACAAGCCATGGACCAAACT 59.854 47.619 18.40 3.93 0.00 2.66
247 256 1.270550 CAGACAAGCCATGGACCAAAC 59.729 52.381 18.40 1.41 0.00 2.93
250 259 1.379916 CCAGACAAGCCATGGACCA 59.620 57.895 18.40 0.00 36.09 4.02
255 264 3.411446 TCAGTTAACCAGACAAGCCATG 58.589 45.455 0.88 0.00 0.00 3.66
258 267 2.162408 GCATCAGTTAACCAGACAAGCC 59.838 50.000 0.88 0.00 0.00 4.35
276 285 2.009774 GATTCTTACAGTGCACGGCAT 58.990 47.619 17.33 0.86 41.91 4.40
306 315 4.041723 GGCGTGTAAATTAATGCATCCAC 58.958 43.478 0.00 0.00 0.00 4.02
331 350 3.583276 TTAGACCAGCCCACGCACG 62.583 63.158 0.00 0.00 37.52 5.34
332 351 2.033194 GTTAGACCAGCCCACGCAC 61.033 63.158 0.00 0.00 37.52 5.34
365 384 2.851195 AGCTCTTCCTTTTCTTCGCAA 58.149 42.857 0.00 0.00 0.00 4.85
366 385 2.550830 AGCTCTTCCTTTTCTTCGCA 57.449 45.000 0.00 0.00 0.00 5.10
367 386 2.808543 TGAAGCTCTTCCTTTTCTTCGC 59.191 45.455 7.12 0.00 38.77 4.70
369 388 4.393834 ACCTGAAGCTCTTCCTTTTCTTC 58.606 43.478 7.12 0.00 38.77 2.87
370 389 4.445557 ACCTGAAGCTCTTCCTTTTCTT 57.554 40.909 7.12 0.00 38.77 2.52
372 391 5.153950 TCTACCTGAAGCTCTTCCTTTTC 57.846 43.478 7.12 0.00 38.77 2.29
416 440 7.710676 ACTTGACTAGATTGATCACACTAGT 57.289 36.000 27.02 27.02 45.07 2.57
417 441 8.898761 AGTACTTGACTAGATTGATCACACTAG 58.101 37.037 22.95 22.95 36.27 2.57
419 443 7.147983 GGAGTACTTGACTAGATTGATCACACT 60.148 40.741 0.00 0.08 39.06 3.55
420 444 6.975772 GGAGTACTTGACTAGATTGATCACAC 59.024 42.308 0.00 0.00 39.06 3.82
421 445 6.096987 GGGAGTACTTGACTAGATTGATCACA 59.903 42.308 0.00 0.00 39.06 3.58
422 446 6.322712 AGGGAGTACTTGACTAGATTGATCAC 59.677 42.308 0.00 0.00 39.06 3.06
424 448 6.293735 CGAGGGAGTACTTGACTAGATTGATC 60.294 46.154 0.00 0.00 39.06 2.92
441 2428 8.308207 GCTCTTATATTTCTTTATCGAGGGAGT 58.692 37.037 0.00 0.00 0.00 3.85
442 2429 7.486551 CGCTCTTATATTTCTTTATCGAGGGAG 59.513 40.741 0.00 0.00 31.29 4.30
443 2430 7.039923 ACGCTCTTATATTTCTTTATCGAGGGA 60.040 37.037 0.00 0.00 32.54 4.20
444 2431 7.091443 ACGCTCTTATATTTCTTTATCGAGGG 58.909 38.462 0.00 0.00 33.38 4.30
445 2432 8.522178 AACGCTCTTATATTTCTTTATCGAGG 57.478 34.615 0.00 0.00 0.00 4.63
452 2439 9.745880 TCGATCTAAACGCTCTTATATTTCTTT 57.254 29.630 0.00 0.00 0.00 2.52
453 2440 9.400638 CTCGATCTAAACGCTCTTATATTTCTT 57.599 33.333 0.00 0.00 0.00 2.52
454 2441 8.569641 ACTCGATCTAAACGCTCTTATATTTCT 58.430 33.333 0.00 0.00 0.00 2.52
455 2442 8.730970 ACTCGATCTAAACGCTCTTATATTTC 57.269 34.615 0.00 0.00 0.00 2.17
456 2443 9.828852 CTACTCGATCTAAACGCTCTTATATTT 57.171 33.333 0.00 0.00 0.00 1.40
457 2444 9.217278 TCTACTCGATCTAAACGCTCTTATATT 57.783 33.333 0.00 0.00 0.00 1.28
458 2445 8.774890 TCTACTCGATCTAAACGCTCTTATAT 57.225 34.615 0.00 0.00 0.00 0.86
459 2446 8.599055 TTCTACTCGATCTAAACGCTCTTATA 57.401 34.615 0.00 0.00 0.00 0.98
460 2447 7.441760 TCTTCTACTCGATCTAAACGCTCTTAT 59.558 37.037 0.00 0.00 0.00 1.73
461 2448 6.760298 TCTTCTACTCGATCTAAACGCTCTTA 59.240 38.462 0.00 0.00 0.00 2.10
462 2449 5.585445 TCTTCTACTCGATCTAAACGCTCTT 59.415 40.000 0.00 0.00 0.00 2.85
463 2450 5.117584 TCTTCTACTCGATCTAAACGCTCT 58.882 41.667 0.00 0.00 0.00 4.09
464 2451 5.406767 TCTTCTACTCGATCTAAACGCTC 57.593 43.478 0.00 0.00 0.00 5.03
465 2452 5.814764 TTCTTCTACTCGATCTAAACGCT 57.185 39.130 0.00 0.00 0.00 5.07
466 2453 6.020520 CCTTTTCTTCTACTCGATCTAAACGC 60.021 42.308 0.00 0.00 0.00 4.84
467 2454 6.020520 GCCTTTTCTTCTACTCGATCTAAACG 60.021 42.308 0.00 0.00 0.00 3.60
468 2455 6.020520 CGCCTTTTCTTCTACTCGATCTAAAC 60.021 42.308 0.00 0.00 0.00 2.01
469 2456 6.034591 CGCCTTTTCTTCTACTCGATCTAAA 58.965 40.000 0.00 0.00 0.00 1.85
470 2457 5.579718 CGCCTTTTCTTCTACTCGATCTAA 58.420 41.667 0.00 0.00 0.00 2.10
471 2458 4.497674 GCGCCTTTTCTTCTACTCGATCTA 60.498 45.833 0.00 0.00 0.00 1.98
472 2459 3.735514 GCGCCTTTTCTTCTACTCGATCT 60.736 47.826 0.00 0.00 0.00 2.75
473 2460 2.536393 GCGCCTTTTCTTCTACTCGATC 59.464 50.000 0.00 0.00 0.00 3.69
474 2461 2.094182 TGCGCCTTTTCTTCTACTCGAT 60.094 45.455 4.18 0.00 0.00 3.59
475 2462 1.271379 TGCGCCTTTTCTTCTACTCGA 59.729 47.619 4.18 0.00 0.00 4.04
476 2463 1.656095 CTGCGCCTTTTCTTCTACTCG 59.344 52.381 4.18 0.00 0.00 4.18
477 2464 2.003301 CCTGCGCCTTTTCTTCTACTC 58.997 52.381 4.18 0.00 0.00 2.59
478 2465 1.339151 CCCTGCGCCTTTTCTTCTACT 60.339 52.381 4.18 0.00 0.00 2.57
479 2466 1.087501 CCCTGCGCCTTTTCTTCTAC 58.912 55.000 4.18 0.00 0.00 2.59
480 2467 0.676782 GCCCTGCGCCTTTTCTTCTA 60.677 55.000 4.18 0.00 0.00 2.10
481 2468 1.973812 GCCCTGCGCCTTTTCTTCT 60.974 57.895 4.18 0.00 0.00 2.85
482 2469 2.568612 GCCCTGCGCCTTTTCTTC 59.431 61.111 4.18 0.00 0.00 2.87
509 2497 1.187087 CCTGTAGTCGAGGAAAGGCT 58.813 55.000 0.00 0.00 31.48 4.58
510 2498 1.135333 CTCCTGTAGTCGAGGAAAGGC 59.865 57.143 0.00 0.00 39.20 4.35
512 2500 3.082548 TGTCTCCTGTAGTCGAGGAAAG 58.917 50.000 0.00 0.00 39.20 2.62
513 2501 2.818432 GTGTCTCCTGTAGTCGAGGAAA 59.182 50.000 0.00 0.00 39.20 3.13
514 2502 2.434428 GTGTCTCCTGTAGTCGAGGAA 58.566 52.381 0.00 0.00 39.20 3.36
516 2504 0.727970 CGTGTCTCCTGTAGTCGAGG 59.272 60.000 0.00 0.00 0.00 4.63
520 2508 1.199558 GTGTCCGTGTCTCCTGTAGTC 59.800 57.143 0.00 0.00 0.00 2.59
523 2511 1.239296 CCGTGTCCGTGTCTCCTGTA 61.239 60.000 0.00 0.00 0.00 2.74
525 2513 2.258591 CCGTGTCCGTGTCTCCTG 59.741 66.667 0.00 0.00 0.00 3.86
527 2515 3.916392 CTGCCGTGTCCGTGTCTCC 62.916 68.421 0.00 0.00 0.00 3.71
530 2518 2.279918 AACTGCCGTGTCCGTGTC 60.280 61.111 0.00 0.00 0.00 3.67
537 2525 1.000955 CTGGTAAGAGAACTGCCGTGT 59.999 52.381 0.00 0.00 0.00 4.49
538 2526 1.000955 ACTGGTAAGAGAACTGCCGTG 59.999 52.381 0.00 0.00 0.00 4.94
539 2527 1.339097 ACTGGTAAGAGAACTGCCGT 58.661 50.000 0.00 0.00 0.00 5.68
540 2528 2.457366 AACTGGTAAGAGAACTGCCG 57.543 50.000 0.00 0.00 0.00 5.69
542 2530 4.246458 CTGGTAACTGGTAAGAGAACTGC 58.754 47.826 0.00 0.00 37.61 4.40
544 2532 4.900054 ACACTGGTAACTGGTAAGAGAACT 59.100 41.667 0.00 0.00 40.36 3.01
728 2730 2.679642 AGCGCTCTGTCTGCCTCT 60.680 61.111 2.64 0.00 0.00 3.69
733 2735 1.153862 GGAGTGAGCGCTCTGTCTG 60.154 63.158 35.27 0.00 35.89 3.51
734 2736 1.594194 CTGGAGTGAGCGCTCTGTCT 61.594 60.000 35.27 28.10 35.89 3.41
735 2737 1.153862 CTGGAGTGAGCGCTCTGTC 60.154 63.158 35.27 28.75 35.89 3.51
736 2738 1.872197 GACTGGAGTGAGCGCTCTGT 61.872 60.000 35.27 23.41 35.89 3.41
772 2778 0.508641 CGCACACTGTTCTTCCTTCG 59.491 55.000 0.00 0.00 0.00 3.79
777 2783 1.201812 CGCATACGCACACTGTTCTTC 60.202 52.381 0.00 0.00 38.40 2.87
779 2785 0.038618 TCGCATACGCACACTGTTCT 60.039 50.000 0.00 0.00 39.84 3.01
780 2786 0.366871 CTCGCATACGCACACTGTTC 59.633 55.000 0.00 0.00 39.84 3.18
781 2787 1.014044 CCTCGCATACGCACACTGTT 61.014 55.000 0.00 0.00 39.84 3.16
782 2788 1.446099 CCTCGCATACGCACACTGT 60.446 57.895 0.00 0.00 39.84 3.55
783 2789 2.802667 GCCTCGCATACGCACACTG 61.803 63.158 0.00 0.00 39.84 3.66
784 2790 2.507110 AAGCCTCGCATACGCACACT 62.507 55.000 0.00 0.00 39.84 3.55
785 2791 1.635663 AAAGCCTCGCATACGCACAC 61.636 55.000 0.00 0.00 39.84 3.82
786 2792 0.108567 TAAAGCCTCGCATACGCACA 60.109 50.000 0.00 0.00 39.84 4.57
787 2793 0.300789 GTAAAGCCTCGCATACGCAC 59.699 55.000 0.00 0.00 39.84 5.34
788 2794 0.808453 GGTAAAGCCTCGCATACGCA 60.808 55.000 0.00 0.00 39.84 5.24
789 2795 1.496403 GGGTAAAGCCTCGCATACGC 61.496 60.000 0.00 0.00 39.84 4.42
790 2796 0.179094 TGGGTAAAGCCTCGCATACG 60.179 55.000 0.00 0.00 42.01 3.06
791 2797 1.940613 CTTGGGTAAAGCCTCGCATAC 59.059 52.381 0.00 0.00 37.43 2.39
792 2798 1.557832 ACTTGGGTAAAGCCTCGCATA 59.442 47.619 0.00 0.00 39.76 3.14
793 2799 0.328258 ACTTGGGTAAAGCCTCGCAT 59.672 50.000 0.00 0.00 39.76 4.73
827 2833 3.546397 GAGGCTTCGTTCGCTCGC 61.546 66.667 0.00 0.00 0.00 5.03
828 2834 2.155194 CAGAGGCTTCGTTCGCTCG 61.155 63.158 0.00 0.00 0.00 5.03
829 2835 1.807573 CCAGAGGCTTCGTTCGCTC 60.808 63.158 0.00 0.00 0.00 5.03
830 2836 2.262915 CCAGAGGCTTCGTTCGCT 59.737 61.111 0.00 0.00 0.00 4.93
831 2837 2.048127 ACCAGAGGCTTCGTTCGC 60.048 61.111 0.00 0.00 0.00 4.70
901 2914 1.228124 GCTGCTGGTGTGGTGGTTA 60.228 57.895 0.00 0.00 0.00 2.85
902 2915 2.519302 GCTGCTGGTGTGGTGGTT 60.519 61.111 0.00 0.00 0.00 3.67
941 2954 0.396811 CCTTTATACCGCCCCTCCTG 59.603 60.000 0.00 0.00 0.00 3.86
942 2955 0.767060 CCCTTTATACCGCCCCTCCT 60.767 60.000 0.00 0.00 0.00 3.69
943 2956 1.759236 CCCTTTATACCGCCCCTCC 59.241 63.158 0.00 0.00 0.00 4.30
944 2957 1.072678 GCCCTTTATACCGCCCCTC 59.927 63.158 0.00 0.00 0.00 4.30
945 2958 2.814835 CGCCCTTTATACCGCCCCT 61.815 63.158 0.00 0.00 0.00 4.79
1076 3089 4.281435 TGTAAACACGAATACAGGAGGACA 59.719 41.667 0.00 0.00 0.00 4.02
1081 3094 4.570930 TGCATGTAAACACGAATACAGGA 58.429 39.130 2.20 0.00 36.26 3.86
1082 3095 4.937696 TGCATGTAAACACGAATACAGG 57.062 40.909 0.00 0.00 37.00 4.00
1084 3097 9.923786 GTATTTATGCATGTAAACACGAATACA 57.076 29.630 10.16 0.00 36.54 2.29
1087 3100 7.643764 GCTGTATTTATGCATGTAAACACGAAT 59.356 33.333 10.16 0.00 0.00 3.34
1088 3101 6.964370 GCTGTATTTATGCATGTAAACACGAA 59.036 34.615 10.16 0.00 0.00 3.85
1089 3102 6.457663 GGCTGTATTTATGCATGTAAACACGA 60.458 38.462 10.16 0.00 0.00 4.35
1090 3103 5.681105 GGCTGTATTTATGCATGTAAACACG 59.319 40.000 10.16 0.97 0.00 4.49
1091 3104 6.795399 AGGCTGTATTTATGCATGTAAACAC 58.205 36.000 10.16 2.82 0.00 3.32
1092 3105 7.403312 AAGGCTGTATTTATGCATGTAAACA 57.597 32.000 10.16 7.90 0.00 2.83
1093 3106 7.759433 ACAAAGGCTGTATTTATGCATGTAAAC 59.241 33.333 10.16 3.38 36.10 2.01
1094 3107 7.835822 ACAAAGGCTGTATTTATGCATGTAAA 58.164 30.769 10.16 2.95 36.10 2.01
1097 3110 5.653769 AGACAAAGGCTGTATTTATGCATGT 59.346 36.000 10.16 0.00 38.84 3.21
1098 3111 6.039047 AGAGACAAAGGCTGTATTTATGCATG 59.961 38.462 10.16 0.00 38.84 4.06
1099 3112 6.039047 CAGAGACAAAGGCTGTATTTATGCAT 59.961 38.462 3.79 3.79 38.84 3.96
1101 3114 5.355350 ACAGAGACAAAGGCTGTATTTATGC 59.645 40.000 0.00 0.00 40.79 3.14
1103 3116 7.398024 AGAACAGAGACAAAGGCTGTATTTAT 58.602 34.615 0.00 0.00 41.65 1.40
1104 3117 6.769512 AGAACAGAGACAAAGGCTGTATTTA 58.230 36.000 0.00 0.00 41.65 1.40
1105 3118 5.625150 AGAACAGAGACAAAGGCTGTATTT 58.375 37.500 0.00 0.00 41.65 1.40
1107 3120 4.899352 AGAACAGAGACAAAGGCTGTAT 57.101 40.909 0.00 0.00 41.65 2.29
1109 3122 3.135530 AGAAGAACAGAGACAAAGGCTGT 59.864 43.478 0.00 0.00 44.15 4.40
1113 3126 4.565022 GGAGAGAAGAACAGAGACAAAGG 58.435 47.826 0.00 0.00 0.00 3.11
1114 3127 4.233789 CGGAGAGAAGAACAGAGACAAAG 58.766 47.826 0.00 0.00 0.00 2.77
1115 3128 3.005897 CCGGAGAGAAGAACAGAGACAAA 59.994 47.826 0.00 0.00 0.00 2.83
1116 3129 2.558795 CCGGAGAGAAGAACAGAGACAA 59.441 50.000 0.00 0.00 0.00 3.18
1117 3130 2.163509 CCGGAGAGAAGAACAGAGACA 58.836 52.381 0.00 0.00 0.00 3.41
1136 3149 2.417719 ACAAGCAGACGATCAGAAACC 58.582 47.619 0.00 0.00 0.00 3.27
1149 3162 2.740981 TGCAAACCAAACAAACAAGCAG 59.259 40.909 0.00 0.00 0.00 4.24
1496 3514 2.360475 AGCTCCAAAAGAGGCGCC 60.360 61.111 21.89 21.89 43.46 6.53
1557 3578 3.118454 CCATCACCACACGCGTCC 61.118 66.667 9.86 0.00 0.00 4.79
1562 3583 0.606401 AGAAAGCCCATCACCACACG 60.606 55.000 0.00 0.00 0.00 4.49
1577 3598 2.358247 GGGGTGCGCTCGAAGAAA 60.358 61.111 9.73 0.00 34.09 2.52
1656 3684 5.539955 CCTGGTAATGGGGATGAATTAAAGG 59.460 44.000 0.00 0.00 0.00 3.11
1824 3889 3.969352 GCAGACACTTGATACTACGATCG 59.031 47.826 14.88 14.88 0.00 3.69
1835 3901 1.665916 GCAGAGCGCAGACACTTGA 60.666 57.895 11.47 0.00 41.79 3.02
1849 3915 1.068402 CAACAAATGATGCACCGCAGA 60.068 47.619 0.00 0.00 43.65 4.26
1850 3916 1.342555 CAACAAATGATGCACCGCAG 58.657 50.000 0.00 0.00 43.65 5.18
1851 3917 0.666880 GCAACAAATGATGCACCGCA 60.667 50.000 10.34 0.00 42.45 5.69
1852 3918 0.388907 AGCAACAAATGATGCACCGC 60.389 50.000 16.44 0.00 44.87 5.68
1853 3919 1.200716 AGAGCAACAAATGATGCACCG 59.799 47.619 16.44 0.00 44.87 4.94
1854 3920 2.029649 ACAGAGCAACAAATGATGCACC 60.030 45.455 16.44 8.62 44.87 5.01
1855 3921 3.293311 ACAGAGCAACAAATGATGCAC 57.707 42.857 16.44 10.87 44.87 4.57
1872 3938 6.593382 CAGTTATTGGAAGAGGAGAAGAACAG 59.407 42.308 0.00 0.00 0.00 3.16
1929 3995 5.048434 CCCAACCAGAAAGAAGACAGATTTC 60.048 44.000 0.00 0.00 33.97 2.17
1931 3997 4.401925 CCCAACCAGAAAGAAGACAGATT 58.598 43.478 0.00 0.00 0.00 2.40
1934 4000 2.158608 ACCCCAACCAGAAAGAAGACAG 60.159 50.000 0.00 0.00 0.00 3.51
1936 4002 2.505405 GACCCCAACCAGAAAGAAGAC 58.495 52.381 0.00 0.00 0.00 3.01
1937 4003 1.423921 GGACCCCAACCAGAAAGAAGA 59.576 52.381 0.00 0.00 0.00 2.87
1938 4004 1.425448 AGGACCCCAACCAGAAAGAAG 59.575 52.381 0.00 0.00 0.00 2.85
1957 4023 1.354040 GTCTCACAAGTCATCCGCAG 58.646 55.000 0.00 0.00 0.00 5.18
1969 4035 3.289797 CTGGCTAGGAGGTCTCACA 57.710 57.895 0.14 0.00 0.00 3.58
1982 4048 1.338020 CAAAAAGTCGCTTTCCTGGCT 59.662 47.619 5.51 0.00 31.99 4.75
1983 4049 1.067060 ACAAAAAGTCGCTTTCCTGGC 59.933 47.619 5.51 0.00 31.99 4.85
1984 4050 3.115554 CAACAAAAAGTCGCTTTCCTGG 58.884 45.455 5.51 0.00 31.99 4.45
1985 4051 3.115554 CCAACAAAAAGTCGCTTTCCTG 58.884 45.455 5.51 8.29 31.99 3.86
1986 4052 3.020984 TCCAACAAAAAGTCGCTTTCCT 58.979 40.909 5.51 0.00 31.99 3.36
1987 4053 3.113322 GTCCAACAAAAAGTCGCTTTCC 58.887 45.455 5.51 0.00 31.99 3.13
1988 4054 2.781646 CGTCCAACAAAAAGTCGCTTTC 59.218 45.455 5.51 0.00 31.99 2.62
1989 4055 2.478879 CCGTCCAACAAAAAGTCGCTTT 60.479 45.455 0.00 0.00 34.94 3.51
1990 4056 1.064952 CCGTCCAACAAAAAGTCGCTT 59.935 47.619 0.00 0.00 0.00 4.68
1991 4057 0.661020 CCGTCCAACAAAAAGTCGCT 59.339 50.000 0.00 0.00 0.00 4.93
1992 4058 0.317519 CCCGTCCAACAAAAAGTCGC 60.318 55.000 0.00 0.00 0.00 5.19
1993 4059 0.309612 CCCCGTCCAACAAAAAGTCG 59.690 55.000 0.00 0.00 0.00 4.18
1994 4060 0.671796 CCCCCGTCCAACAAAAAGTC 59.328 55.000 0.00 0.00 0.00 3.01
1995 4061 1.396607 GCCCCCGTCCAACAAAAAGT 61.397 55.000 0.00 0.00 0.00 2.66
1996 4062 1.365999 GCCCCCGTCCAACAAAAAG 59.634 57.895 0.00 0.00 0.00 2.27
1997 4063 0.760945 ATGCCCCCGTCCAACAAAAA 60.761 50.000 0.00 0.00 0.00 1.94
1998 4064 0.760945 AATGCCCCCGTCCAACAAAA 60.761 50.000 0.00 0.00 0.00 2.44
1999 4065 1.152440 AATGCCCCCGTCCAACAAA 60.152 52.632 0.00 0.00 0.00 2.83
2000 4066 1.905843 CAATGCCCCCGTCCAACAA 60.906 57.895 0.00 0.00 0.00 2.83
2001 4067 2.282816 CAATGCCCCCGTCCAACA 60.283 61.111 0.00 0.00 0.00 3.33
2002 4068 3.068064 CCAATGCCCCCGTCCAAC 61.068 66.667 0.00 0.00 0.00 3.77
2010 4076 4.759205 AACGGGAGCCAATGCCCC 62.759 66.667 0.00 0.00 41.50 5.80
2011 4077 2.225791 GAAAACGGGAGCCAATGCCC 62.226 60.000 0.00 0.00 41.11 5.36
2012 4078 1.215382 GAAAACGGGAGCCAATGCC 59.785 57.895 0.00 0.00 38.69 4.40
2013 4079 0.109132 CAGAAAACGGGAGCCAATGC 60.109 55.000 0.00 0.00 37.95 3.56
2014 4080 1.533625 TCAGAAAACGGGAGCCAATG 58.466 50.000 0.00 0.00 0.00 2.82
2015 4081 2.286365 TTCAGAAAACGGGAGCCAAT 57.714 45.000 0.00 0.00 0.00 3.16
2016 4082 2.060050 TTTCAGAAAACGGGAGCCAA 57.940 45.000 0.00 0.00 0.00 4.52
2017 4083 1.885887 CATTTCAGAAAACGGGAGCCA 59.114 47.619 0.00 0.00 0.00 4.75
2018 4084 2.159382 TCATTTCAGAAAACGGGAGCC 58.841 47.619 0.00 0.00 0.00 4.70
2019 4085 4.082787 TGAATCATTTCAGAAAACGGGAGC 60.083 41.667 0.00 0.00 36.94 4.70
2020 4086 5.627499 TGAATCATTTCAGAAAACGGGAG 57.373 39.130 0.00 0.00 36.94 4.30
2021 4087 6.398234 TTTGAATCATTTCAGAAAACGGGA 57.602 33.333 0.00 0.00 42.60 5.14
2022 4088 7.475771 TTTTTGAATCATTTCAGAAAACGGG 57.524 32.000 0.00 0.00 40.79 5.28
2081 4147 9.553418 CATCGTGAATATGTACAATTTTTCACA 57.447 29.630 26.00 19.04 41.73 3.58
2082 4148 9.009327 CCATCGTGAATATGTACAATTTTTCAC 57.991 33.333 21.48 21.48 39.51 3.18
2083 4149 8.951243 TCCATCGTGAATATGTACAATTTTTCA 58.049 29.630 0.00 4.49 0.00 2.69
2084 4150 9.950680 ATCCATCGTGAATATGTACAATTTTTC 57.049 29.630 0.00 1.84 0.00 2.29
2085 4151 9.950680 GATCCATCGTGAATATGTACAATTTTT 57.049 29.630 0.00 0.00 0.00 1.94
2086 4152 9.342308 AGATCCATCGTGAATATGTACAATTTT 57.658 29.630 0.00 0.00 0.00 1.82
2087 4153 8.777413 CAGATCCATCGTGAATATGTACAATTT 58.223 33.333 0.00 0.00 0.00 1.82
2088 4154 7.933577 ACAGATCCATCGTGAATATGTACAATT 59.066 33.333 0.00 1.24 0.00 2.32
2089 4155 7.386025 CACAGATCCATCGTGAATATGTACAAT 59.614 37.037 0.00 0.00 35.13 2.71
2090 4156 6.701400 CACAGATCCATCGTGAATATGTACAA 59.299 38.462 0.00 0.00 35.13 2.41
2091 4157 6.040391 TCACAGATCCATCGTGAATATGTACA 59.960 38.462 0.00 0.00 37.38 2.90
2092 4158 6.447162 TCACAGATCCATCGTGAATATGTAC 58.553 40.000 10.06 0.00 37.38 2.90
2093 4159 6.648879 TCACAGATCCATCGTGAATATGTA 57.351 37.500 10.06 0.00 37.38 2.29
2094 4160 5.535753 TCACAGATCCATCGTGAATATGT 57.464 39.130 10.06 0.00 37.38 2.29
2095 4161 7.430992 AATTCACAGATCCATCGTGAATATG 57.569 36.000 24.17 4.95 46.80 1.78
2096 4162 8.455903 AAAATTCACAGATCCATCGTGAATAT 57.544 30.769 24.17 18.29 46.80 1.28
2097 4163 7.864108 AAAATTCACAGATCCATCGTGAATA 57.136 32.000 24.17 11.09 46.80 1.75
2099 4165 6.878923 ACTAAAATTCACAGATCCATCGTGAA 59.121 34.615 19.69 19.69 45.06 3.18
2100 4166 6.406370 ACTAAAATTCACAGATCCATCGTGA 58.594 36.000 8.99 8.99 38.00 4.35
2101 4167 6.668541 ACTAAAATTCACAGATCCATCGTG 57.331 37.500 0.00 5.64 34.77 4.35
2102 4168 6.878923 TGAACTAAAATTCACAGATCCATCGT 59.121 34.615 0.00 0.00 33.62 3.73
2103 4169 7.307493 TGAACTAAAATTCACAGATCCATCG 57.693 36.000 0.00 0.00 33.62 3.84
2104 4170 9.912634 TTTTGAACTAAAATTCACAGATCCATC 57.087 29.630 0.00 0.00 38.31 3.51
2122 4188 8.720562 GCTTGCAAACCATAATATTTTTGAACT 58.279 29.630 12.44 0.00 31.79 3.01
2123 4189 8.720562 AGCTTGCAAACCATAATATTTTTGAAC 58.279 29.630 12.44 0.20 31.79 3.18
2124 4190 8.719648 CAGCTTGCAAACCATAATATTTTTGAA 58.280 29.630 12.44 1.81 31.79 2.69
2125 4191 7.148440 GCAGCTTGCAAACCATAATATTTTTGA 60.148 33.333 12.44 0.00 44.26 2.69
2126 4192 6.962678 GCAGCTTGCAAACCATAATATTTTTG 59.037 34.615 0.00 0.00 44.26 2.44
2127 4193 7.075674 GCAGCTTGCAAACCATAATATTTTT 57.924 32.000 0.00 0.00 44.26 1.94
2128 4194 6.667007 GCAGCTTGCAAACCATAATATTTT 57.333 33.333 0.00 0.00 44.26 1.82
2143 4209 1.357907 TTTTTGTGTGTGCAGCTTGC 58.642 45.000 0.00 1.70 45.29 4.01
2179 4245 3.292460 TCGTTGTTGGACCAGGATTTTT 58.708 40.909 0.00 0.00 0.00 1.94
2180 4246 2.938838 TCGTTGTTGGACCAGGATTTT 58.061 42.857 0.00 0.00 0.00 1.82
2181 4247 2.649531 TCGTTGTTGGACCAGGATTT 57.350 45.000 0.00 0.00 0.00 2.17
2182 4248 2.649531 TTCGTTGTTGGACCAGGATT 57.350 45.000 0.00 0.00 0.00 3.01
2183 4249 2.649531 TTTCGTTGTTGGACCAGGAT 57.350 45.000 0.00 0.00 0.00 3.24
2184 4250 2.421751 TTTTCGTTGTTGGACCAGGA 57.578 45.000 0.00 0.00 0.00 3.86
2202 4268 4.064388 CGTGAAAATGGGCCAATCTTTTT 58.936 39.130 11.89 13.12 0.00 1.94
2203 4269 3.070878 ACGTGAAAATGGGCCAATCTTTT 59.929 39.130 11.89 13.53 0.00 2.27
2204 4270 2.632512 ACGTGAAAATGGGCCAATCTTT 59.367 40.909 11.89 10.92 0.00 2.52
2205 4271 2.247358 ACGTGAAAATGGGCCAATCTT 58.753 42.857 11.89 3.72 0.00 2.40
2206 4272 1.923356 ACGTGAAAATGGGCCAATCT 58.077 45.000 11.89 0.00 0.00 2.40
2207 4273 5.705609 ATATACGTGAAAATGGGCCAATC 57.294 39.130 11.89 10.45 0.00 2.67
2208 4274 7.775053 AATATATACGTGAAAATGGGCCAAT 57.225 32.000 11.89 0.00 0.00 3.16
2209 4275 7.068839 ACAAATATATACGTGAAAATGGGCCAA 59.931 33.333 11.89 0.00 0.00 4.52
2210 4276 6.547880 ACAAATATATACGTGAAAATGGGCCA 59.452 34.615 9.61 9.61 0.00 5.36
2211 4277 6.977213 ACAAATATATACGTGAAAATGGGCC 58.023 36.000 0.00 0.00 0.00 5.80
2212 4278 8.865590 AAACAAATATATACGTGAAAATGGGC 57.134 30.769 0.00 0.00 0.00 5.36
2242 4308 4.530710 ACTTTCATAAGTGGCGTAGACA 57.469 40.909 0.00 0.00 42.91 3.41
2243 4309 8.700644 CAATATACTTTCATAAGTGGCGTAGAC 58.299 37.037 0.00 0.00 44.22 2.59
2244 4310 8.418662 ACAATATACTTTCATAAGTGGCGTAGA 58.581 33.333 0.00 0.00 44.22 2.59
2245 4311 8.589335 ACAATATACTTTCATAAGTGGCGTAG 57.411 34.615 0.00 0.00 44.22 3.51
2246 4312 8.198778 TGACAATATACTTTCATAAGTGGCGTA 58.801 33.333 0.00 0.00 44.22 4.42
2247 4313 7.045416 TGACAATATACTTTCATAAGTGGCGT 58.955 34.615 0.00 0.00 44.22 5.68
2248 4314 7.477144 TGACAATATACTTTCATAAGTGGCG 57.523 36.000 0.00 0.00 44.22 5.69
2249 4315 9.056005 TCATGACAATATACTTTCATAAGTGGC 57.944 33.333 0.00 0.00 44.22 5.01
2265 4331 9.743057 ACGTTGAAGAAAATTTTCATGACAATA 57.257 25.926 28.00 9.23 39.61 1.90
2266 4332 8.542132 CACGTTGAAGAAAATTTTCATGACAAT 58.458 29.630 28.00 13.26 39.61 2.71
2267 4333 7.543868 ACACGTTGAAGAAAATTTTCATGACAA 59.456 29.630 28.00 22.43 39.61 3.18
2268 4334 7.032580 ACACGTTGAAGAAAATTTTCATGACA 58.967 30.769 28.00 19.06 39.61 3.58
2269 4335 7.219917 TGACACGTTGAAGAAAATTTTCATGAC 59.780 33.333 28.00 19.34 39.61 3.06
2270 4336 7.254137 TGACACGTTGAAGAAAATTTTCATGA 58.746 30.769 28.00 11.87 39.61 3.07
2271 4337 7.448588 TGACACGTTGAAGAAAATTTTCATG 57.551 32.000 28.00 16.80 39.61 3.07
2272 4338 9.912634 ATATGACACGTTGAAGAAAATTTTCAT 57.087 25.926 28.00 19.21 39.61 2.57
2273 4339 9.179552 CATATGACACGTTGAAGAAAATTTTCA 57.820 29.630 28.00 9.95 39.61 2.69
2274 4340 9.180678 ACATATGACACGTTGAAGAAAATTTTC 57.819 29.630 21.00 21.00 37.45 2.29
2275 4341 8.967218 CACATATGACACGTTGAAGAAAATTTT 58.033 29.630 10.38 2.28 0.00 1.82
2276 4342 8.134895 ACACATATGACACGTTGAAGAAAATTT 58.865 29.630 10.38 0.00 0.00 1.82
2277 4343 7.648142 ACACATATGACACGTTGAAGAAAATT 58.352 30.769 10.38 0.00 0.00 1.82
2278 4344 7.202016 ACACATATGACACGTTGAAGAAAAT 57.798 32.000 10.38 0.00 0.00 1.82
2279 4345 6.612247 ACACATATGACACGTTGAAGAAAA 57.388 33.333 10.38 0.00 0.00 2.29
2280 4346 7.899178 ATACACATATGACACGTTGAAGAAA 57.101 32.000 10.38 0.00 0.00 2.52
2281 4347 7.899178 AATACACATATGACACGTTGAAGAA 57.101 32.000 10.38 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.