Multiple sequence alignment - TraesCS3A01G318400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G318400 chr3A 100.000 8166 0 0 1 8166 559545592 559537427 0.000000e+00 15080.0
1 TraesCS3A01G318400 chr3A 93.023 86 6 0 4817 4902 559540702 559540617 8.600000e-25 126.0
2 TraesCS3A01G318400 chr3A 93.023 86 6 0 4891 4976 559540776 559540691 8.600000e-25 126.0
3 TraesCS3A01G318400 chr3D 93.456 4080 123 46 87 4101 427209271 427213271 0.000000e+00 5923.0
4 TraesCS3A01G318400 chr3D 92.662 1758 82 14 5151 6881 427214853 427216590 0.000000e+00 2488.0
5 TraesCS3A01G318400 chr3D 95.743 1245 40 8 6928 8164 427216586 427217825 0.000000e+00 1993.0
6 TraesCS3A01G318400 chr3D 91.085 673 36 6 4238 4895 427213902 427214565 0.000000e+00 889.0
7 TraesCS3A01G318400 chr3D 92.391 92 7 0 5046 5137 427214646 427214737 1.850000e-26 132.0
8 TraesCS3A01G318400 chr3B 93.172 3720 145 46 431 4101 556859955 556863614 0.000000e+00 5361.0
9 TraesCS3A01G318400 chr3B 92.568 1776 79 14 5139 6881 556865112 556866867 0.000000e+00 2499.0
10 TraesCS3A01G318400 chr3B 86.607 1008 67 26 6928 7896 556866863 556867841 0.000000e+00 1051.0
11 TraesCS3A01G318400 chr3B 88.509 731 40 17 4184 4899 556864147 556864848 0.000000e+00 845.0
12 TraesCS3A01G318400 chr3B 92.118 203 13 3 87 289 556853324 556853523 4.820000e-72 283.0
13 TraesCS3A01G318400 chr3B 87.209 258 18 6 4888 5137 556864755 556865005 6.240000e-71 279.0
14 TraesCS3A01G318400 chr3B 96.203 79 3 0 358 436 556859757 556859835 6.650000e-26 130.0
15 TraesCS3A01G318400 chr6D 95.858 676 20 2 2508 3177 463220886 463220213 0.000000e+00 1086.0
16 TraesCS3A01G318400 chr4B 92.553 94 6 1 1 94 303486993 303487085 5.140000e-27 134.0
17 TraesCS3A01G318400 chr4B 95.238 84 4 0 1 84 606751511 606751594 5.140000e-27 134.0
18 TraesCS3A01G318400 chr4B 94.186 86 5 0 1 86 102114892 102114977 1.850000e-26 132.0
19 TraesCS3A01G318400 chr7D 94.186 86 5 0 1 86 356902777 356902692 1.850000e-26 132.0
20 TraesCS3A01G318400 chr6B 94.186 86 5 0 1 86 275767308 275767393 1.850000e-26 132.0
21 TraesCS3A01G318400 chr6B 94.186 86 5 0 1 86 551053284 551053199 1.850000e-26 132.0
22 TraesCS3A01G318400 chr5D 94.186 86 5 0 1 86 135754656 135754571 1.850000e-26 132.0
23 TraesCS3A01G318400 chr1B 94.186 86 5 0 1 86 606484868 606484783 1.850000e-26 132.0
24 TraesCS3A01G318400 chr1A 94.186 86 5 0 1 86 394236383 394236298 1.850000e-26 132.0
25 TraesCS3A01G318400 chr1D 85.938 64 4 3 328 389 370522950 370522890 6.840000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G318400 chr3A 559537427 559545592 8165 True 15080.000000 15080 100.000000 1 8166 1 chr3A.!!$R1 8165
1 TraesCS3A01G318400 chr3D 427209271 427217825 8554 False 2285.000000 5923 93.067400 87 8164 5 chr3D.!!$F1 8077
2 TraesCS3A01G318400 chr3B 556859757 556867841 8084 False 1694.166667 5361 90.711333 358 7896 6 chr3B.!!$F2 7538
3 TraesCS3A01G318400 chr6D 463220213 463220886 673 True 1086.000000 1086 95.858000 2508 3177 1 chr6D.!!$R1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 450 0.534203 TATTCCGGAGCCGCCATTTC 60.534 55.000 3.34 0.0 38.24 2.17 F
1201 1381 0.464554 GAATGGGGCTGTAGCTGTCC 60.465 60.000 0.00 0.0 41.70 4.02 F
1309 1489 0.034186 AGGATGCCAATTTGCTCGGA 60.034 50.000 2.90 0.0 0.00 4.55 F
1310 1490 1.035139 GGATGCCAATTTGCTCGGAT 58.965 50.000 2.90 0.0 0.00 4.18 F
1347 1553 1.911464 CACTGTCACATAGCGTGTACG 59.089 52.381 0.00 0.0 46.44 3.67 F
2199 2409 2.485657 GCCAGCTTGGTATCTTCTACCC 60.486 54.545 4.45 0.0 40.46 3.69 F
4066 4292 0.109458 CATGTGTGTGTGCCATCAGC 60.109 55.000 0.00 0.0 44.14 4.26 F
4200 4898 0.167251 CCGAGCGGCGTAACAAAAAT 59.833 50.000 9.37 0.0 38.67 1.82 F
4932 5690 0.033796 CCAGCACCAACAGGATCCAT 60.034 55.000 15.82 0.0 0.00 3.41 F
4944 5702 0.318784 GGATCCATGTCGTCGTAGCC 60.319 60.000 6.95 0.0 0.00 3.93 F
4950 5708 0.462581 ATGTCGTCGTAGCCGGAGTA 60.463 55.000 5.05 0.0 33.95 2.59 F
5068 5826 0.613012 AGGGCAGTGGCATTTCCTTC 60.613 55.000 19.48 0.0 43.71 3.46 F
6838 7740 1.689273 ACCTGTGTCAGTCTCACCTTC 59.311 52.381 0.00 0.0 35.25 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1290 1470 0.034186 TCCGAGCAAATTGGCATCCT 60.034 50.000 7.75 0.00 35.83 3.24 R
2365 2576 1.541588 GTCCTGAATGGGTGCTTTGTC 59.458 52.381 0.00 0.00 36.20 3.18 R
2777 2988 2.282701 ACACATGATTCATTTGCGCC 57.717 45.000 4.18 0.00 0.00 6.53 R
3106 3325 3.496331 ACCCAACACCCTAAAATGTCAG 58.504 45.455 0.00 0.00 0.00 3.51 R
3315 3535 9.605275 TCTCTAAGATGACCAAATATTGTTCTG 57.395 33.333 0.00 0.00 0.00 3.02 R
4181 4879 0.167251 ATTTTTGTTACGCCGCTCGG 59.833 50.000 3.56 3.56 43.86 4.63 R
4913 5671 0.033796 ATGGATCCTGTTGGTGCTGG 60.034 55.000 14.23 0.00 34.23 4.85 R
5939 6807 0.107214 TGATGGCCTTCCCGATCAAC 60.107 55.000 15.62 0.00 35.87 3.18 R
6234 7114 1.396996 GCCATGTAGGTTGCAACTACG 59.603 52.381 27.64 15.23 42.84 3.51 R
6651 7553 2.035704 ACAGTGTCTGCAGAAGTGAGAG 59.964 50.000 26.63 14.83 34.37 3.20 R
6761 7663 2.102578 GCAATTACAGATGGCAGGGTT 58.897 47.619 0.00 0.00 0.00 4.11 R
7033 7935 1.027357 AGTTCACAAGCACAAGCCAG 58.973 50.000 0.00 0.00 43.56 4.85 R
8092 9030 0.108804 AGGCAATGTACACGAGGACG 60.109 55.000 0.00 0.00 45.75 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.356665 TTGGAGTACAAAGCAAGCCA 57.643 45.000 0.00 0.00 35.79 4.75
34 35 1.896220 TGGAGTACAAAGCAAGCCAG 58.104 50.000 0.00 0.00 0.00 4.85
35 36 1.419762 TGGAGTACAAAGCAAGCCAGA 59.580 47.619 0.00 0.00 0.00 3.86
36 37 2.158682 TGGAGTACAAAGCAAGCCAGAA 60.159 45.455 0.00 0.00 0.00 3.02
37 38 3.084786 GGAGTACAAAGCAAGCCAGAAT 58.915 45.455 0.00 0.00 0.00 2.40
38 39 4.261801 GGAGTACAAAGCAAGCCAGAATA 58.738 43.478 0.00 0.00 0.00 1.75
39 40 4.333926 GGAGTACAAAGCAAGCCAGAATAG 59.666 45.833 0.00 0.00 0.00 1.73
40 41 4.911390 AGTACAAAGCAAGCCAGAATAGT 58.089 39.130 0.00 0.00 0.00 2.12
41 42 5.316987 AGTACAAAGCAAGCCAGAATAGTT 58.683 37.500 0.00 0.00 0.00 2.24
42 43 6.472887 AGTACAAAGCAAGCCAGAATAGTTA 58.527 36.000 0.00 0.00 0.00 2.24
43 44 5.629079 ACAAAGCAAGCCAGAATAGTTAC 57.371 39.130 0.00 0.00 0.00 2.50
44 45 5.316987 ACAAAGCAAGCCAGAATAGTTACT 58.683 37.500 0.00 0.00 0.00 2.24
45 46 6.472887 ACAAAGCAAGCCAGAATAGTTACTA 58.527 36.000 0.00 0.00 0.00 1.82
46 47 6.595716 ACAAAGCAAGCCAGAATAGTTACTAG 59.404 38.462 0.00 0.00 0.00 2.57
47 48 5.941555 AGCAAGCCAGAATAGTTACTAGT 57.058 39.130 0.00 0.00 0.00 2.57
48 49 5.908341 AGCAAGCCAGAATAGTTACTAGTC 58.092 41.667 11.35 11.35 32.12 2.59
49 50 5.659079 AGCAAGCCAGAATAGTTACTAGTCT 59.341 40.000 15.46 15.46 41.21 3.24
50 51 6.834451 AGCAAGCCAGAATAGTTACTAGTCTA 59.166 38.462 19.78 0.00 38.99 2.59
51 52 7.342284 AGCAAGCCAGAATAGTTACTAGTCTAA 59.658 37.037 19.78 0.00 38.99 2.10
52 53 7.435784 GCAAGCCAGAATAGTTACTAGTCTAAC 59.564 40.741 19.78 14.91 38.99 2.34
53 54 7.585579 AGCCAGAATAGTTACTAGTCTAACC 57.414 40.000 19.78 11.90 38.99 2.85
54 55 6.550481 AGCCAGAATAGTTACTAGTCTAACCC 59.450 42.308 19.78 9.90 38.99 4.11
55 56 6.323225 GCCAGAATAGTTACTAGTCTAACCCA 59.677 42.308 19.78 0.00 38.99 4.51
56 57 7.015389 GCCAGAATAGTTACTAGTCTAACCCAT 59.985 40.741 19.78 0.00 38.99 4.00
57 58 8.361139 CCAGAATAGTTACTAGTCTAACCCATG 58.639 40.741 19.78 8.53 38.99 3.66
58 59 8.915036 CAGAATAGTTACTAGTCTAACCCATGT 58.085 37.037 19.78 0.00 38.99 3.21
59 60 9.490083 AGAATAGTTACTAGTCTAACCCATGTT 57.510 33.333 18.98 0.00 39.20 2.71
62 63 6.944096 AGTTACTAGTCTAACCCATGTTTCC 58.056 40.000 0.00 0.00 35.87 3.13
63 64 6.729569 AGTTACTAGTCTAACCCATGTTTCCT 59.270 38.462 0.00 0.00 35.87 3.36
64 65 7.897565 AGTTACTAGTCTAACCCATGTTTCCTA 59.102 37.037 0.00 0.00 35.87 2.94
65 66 8.534496 GTTACTAGTCTAACCCATGTTTCCTAA 58.466 37.037 0.00 0.00 35.87 2.69
66 67 7.750947 ACTAGTCTAACCCATGTTTCCTAAT 57.249 36.000 0.00 0.00 35.87 1.73
67 68 8.849543 ACTAGTCTAACCCATGTTTCCTAATA 57.150 34.615 0.00 0.00 35.87 0.98
68 69 8.702819 ACTAGTCTAACCCATGTTTCCTAATAC 58.297 37.037 0.00 0.00 35.87 1.89
69 70 7.504926 AGTCTAACCCATGTTTCCTAATACA 57.495 36.000 0.00 0.00 35.87 2.29
70 71 7.924541 AGTCTAACCCATGTTTCCTAATACAA 58.075 34.615 0.00 0.00 35.87 2.41
71 72 8.557450 AGTCTAACCCATGTTTCCTAATACAAT 58.443 33.333 0.00 0.00 35.87 2.71
72 73 8.837389 GTCTAACCCATGTTTCCTAATACAATC 58.163 37.037 0.00 0.00 35.87 2.67
73 74 8.553153 TCTAACCCATGTTTCCTAATACAATCA 58.447 33.333 0.00 0.00 35.87 2.57
74 75 7.404671 AACCCATGTTTCCTAATACAATCAC 57.595 36.000 0.00 0.00 0.00 3.06
75 76 6.489603 ACCCATGTTTCCTAATACAATCACA 58.510 36.000 0.00 0.00 0.00 3.58
76 77 7.125391 ACCCATGTTTCCTAATACAATCACAT 58.875 34.615 0.00 0.00 0.00 3.21
77 78 7.619302 ACCCATGTTTCCTAATACAATCACATT 59.381 33.333 0.00 0.00 0.00 2.71
78 79 9.130661 CCCATGTTTCCTAATACAATCACATTA 57.869 33.333 0.00 0.00 0.00 1.90
79 80 9.950680 CCATGTTTCCTAATACAATCACATTAC 57.049 33.333 0.00 0.00 0.00 1.89
82 83 9.952030 TGTTTCCTAATACAATCACATTACTCA 57.048 29.630 0.00 0.00 0.00 3.41
85 86 9.952030 TTCCTAATACAATCACATTACTCAACA 57.048 29.630 0.00 0.00 0.00 3.33
86 87 9.378551 TCCTAATACAATCACATTACTCAACAC 57.621 33.333 0.00 0.00 0.00 3.32
87 88 9.383519 CCTAATACAATCACATTACTCAACACT 57.616 33.333 0.00 0.00 0.00 3.55
90 91 9.507329 AATACAATCACATTACTCAACACTCTT 57.493 29.630 0.00 0.00 0.00 2.85
91 92 7.807977 ACAATCACATTACTCAACACTCTTT 57.192 32.000 0.00 0.00 0.00 2.52
92 93 7.642669 ACAATCACATTACTCAACACTCTTTG 58.357 34.615 0.00 0.00 0.00 2.77
93 94 7.283127 ACAATCACATTACTCAACACTCTTTGT 59.717 33.333 0.00 0.00 41.74 2.83
149 150 6.996509 TGAGGGTTAACTTGTCGTATAAACT 58.003 36.000 5.42 0.00 0.00 2.66
150 151 8.121305 TGAGGGTTAACTTGTCGTATAAACTA 57.879 34.615 5.42 0.00 0.00 2.24
437 438 2.895404 TCTTCCCCGTATTCTATTCCGG 59.105 50.000 0.00 0.00 40.12 5.14
449 450 0.534203 TATTCCGGAGCCGCCATTTC 60.534 55.000 3.34 0.00 38.24 2.17
499 625 1.370900 GCAAGCAACGACAAGCAGG 60.371 57.895 0.00 0.00 0.00 4.85
500 626 1.370900 CAAGCAACGACAAGCAGGC 60.371 57.895 0.00 0.00 0.00 4.85
502 628 1.383456 AAGCAACGACAAGCAGGCAA 61.383 50.000 0.00 0.00 0.00 4.52
504 630 1.283793 CAACGACAAGCAGGCAAGG 59.716 57.895 0.00 0.00 0.00 3.61
505 631 2.555547 AACGACAAGCAGGCAAGGC 61.556 57.895 0.00 0.00 0.00 4.35
506 632 2.670934 CGACAAGCAGGCAAGGCT 60.671 61.111 0.00 0.00 45.15 4.58
507 633 2.684843 CGACAAGCAGGCAAGGCTC 61.685 63.158 0.00 0.00 41.66 4.70
508 634 2.670934 ACAAGCAGGCAAGGCTCG 60.671 61.111 0.00 0.00 41.66 5.03
509 635 3.437795 CAAGCAGGCAAGGCTCGG 61.438 66.667 0.00 0.00 41.66 4.63
510 636 4.729918 AAGCAGGCAAGGCTCGGG 62.730 66.667 0.00 0.00 41.66 5.14
674 846 1.910580 TTCCCAGCTAAAGGGCGAGG 61.911 60.000 2.58 0.00 46.36 4.63
676 848 2.892425 CAGCTAAAGGGCGAGGCG 60.892 66.667 0.00 0.00 37.29 5.52
679 851 2.893398 CTAAAGGGCGAGGCGAGT 59.107 61.111 0.00 0.00 0.00 4.18
680 852 1.227002 CTAAAGGGCGAGGCGAGTC 60.227 63.158 0.00 0.00 0.00 3.36
681 853 2.630592 CTAAAGGGCGAGGCGAGTCC 62.631 65.000 0.00 0.00 0.00 3.85
817 996 1.743995 ACCACGCCATTACTTCGGC 60.744 57.895 0.00 0.00 45.28 5.54
821 1000 3.583086 GCCATTACTTCGGCGCCC 61.583 66.667 23.46 2.84 38.82 6.13
822 1001 2.900337 CCATTACTTCGGCGCCCC 60.900 66.667 23.46 0.00 0.00 5.80
851 1030 4.101448 CCCTCCTCCAACCGCCAG 62.101 72.222 0.00 0.00 0.00 4.85
853 1032 4.785453 CTCCTCCAACCGCCAGCC 62.785 72.222 0.00 0.00 0.00 4.85
1140 1319 1.538047 ATGCGTTGCCATTCTTCTGT 58.462 45.000 0.00 0.00 0.00 3.41
1183 1363 4.435425 CCGTAATCGTAGTTGGATTTGGA 58.565 43.478 0.00 0.00 35.78 3.53
1201 1381 0.464554 GAATGGGGCTGTAGCTGTCC 60.465 60.000 0.00 0.00 41.70 4.02
1202 1382 2.257409 AATGGGGCTGTAGCTGTCCG 62.257 60.000 0.00 0.00 41.70 4.79
1285 1465 6.830324 AGTGTTAGCATGGTGATGTCATTTAT 59.170 34.615 7.89 0.00 31.50 1.40
1286 1466 7.340232 AGTGTTAGCATGGTGATGTCATTTATT 59.660 33.333 7.89 0.00 31.50 1.40
1287 1467 8.620416 GTGTTAGCATGGTGATGTCATTTATTA 58.380 33.333 7.89 0.00 31.50 0.98
1288 1468 8.839343 TGTTAGCATGGTGATGTCATTTATTAG 58.161 33.333 7.89 0.00 31.50 1.73
1289 1469 6.323203 AGCATGGTGATGTCATTTATTAGC 57.677 37.500 0.00 0.00 31.50 3.09
1290 1470 5.829391 AGCATGGTGATGTCATTTATTAGCA 59.171 36.000 0.00 0.00 31.50 3.49
1291 1471 6.016527 AGCATGGTGATGTCATTTATTAGCAG 60.017 38.462 0.00 0.00 31.50 4.24
1292 1472 6.675026 CATGGTGATGTCATTTATTAGCAGG 58.325 40.000 0.00 0.00 0.00 4.85
1293 1473 6.000246 TGGTGATGTCATTTATTAGCAGGA 58.000 37.500 0.00 0.00 0.00 3.86
1294 1474 6.604171 TGGTGATGTCATTTATTAGCAGGAT 58.396 36.000 0.00 0.00 0.00 3.24
1295 1475 6.487668 TGGTGATGTCATTTATTAGCAGGATG 59.512 38.462 0.00 0.00 40.87 3.51
1307 1487 3.635433 CAGGATGCCAATTTGCTCG 57.365 52.632 2.90 0.00 0.00 5.03
1308 1488 0.101759 CAGGATGCCAATTTGCTCGG 59.898 55.000 2.90 0.00 0.00 4.63
1309 1489 0.034186 AGGATGCCAATTTGCTCGGA 60.034 50.000 2.90 0.00 0.00 4.55
1310 1490 1.035139 GGATGCCAATTTGCTCGGAT 58.965 50.000 2.90 0.00 0.00 4.18
1347 1553 1.911464 CACTGTCACATAGCGTGTACG 59.089 52.381 0.00 0.00 46.44 3.67
1381 1587 7.651304 TCATGATTTTGTTTTATCAGCGTTTGT 59.349 29.630 0.00 0.00 34.52 2.83
1476 1682 9.924650 GAGTAATGAGGTAGAAGTGTTAAAAGA 57.075 33.333 0.00 0.00 0.00 2.52
1599 1805 5.531287 AGCATTAATTTAGGATCACGGGAAC 59.469 40.000 0.00 0.00 0.00 3.62
1831 2041 3.807622 TGTGGTTTCTTCGATTCAGTGAC 59.192 43.478 0.00 0.00 0.00 3.67
2186 2396 2.555325 TGACTCAAAATCTGCCAGCTTG 59.445 45.455 0.00 0.00 0.00 4.01
2199 2409 2.485657 GCCAGCTTGGTATCTTCTACCC 60.486 54.545 4.45 0.00 40.46 3.69
2224 2434 7.095607 CCGATACATGTTGCTTTAGTTAGATCC 60.096 40.741 2.30 0.00 0.00 3.36
2228 2438 5.142061 TGTTGCTTTAGTTAGATCCGTCA 57.858 39.130 0.00 0.00 0.00 4.35
2238 2448 6.057627 AGTTAGATCCGTCATAGTAACACG 57.942 41.667 0.00 0.00 0.00 4.49
2306 2517 8.547967 ACATACTGTGTTTTGTATCCTAACTG 57.452 34.615 0.00 0.00 38.01 3.16
2310 2521 7.703328 ACTGTGTTTTGTATCCTAACTGTTTG 58.297 34.615 0.00 0.00 0.00 2.93
2362 2573 8.810427 CATAAATTGGAATTGGAGAATTTGACG 58.190 33.333 0.00 0.00 31.58 4.35
2365 2576 3.191162 TGGAATTGGAGAATTTGACGCTG 59.809 43.478 0.00 0.00 31.58 5.18
2918 3129 3.447586 TGAACCAGCTCGCTAGAAACTAT 59.552 43.478 0.00 0.00 0.00 2.12
3226 3446 2.499289 TGCTCTTTTGCACCCAAAGAAA 59.501 40.909 12.00 3.03 41.58 2.52
3357 3577 9.202273 CATCTTAGAGACTTAGGCATGATAAAC 57.798 37.037 0.00 0.00 0.00 2.01
3359 3579 5.957771 AGAGACTTAGGCATGATAAACCA 57.042 39.130 0.00 0.00 0.00 3.67
3360 3580 6.313519 AGAGACTTAGGCATGATAAACCAA 57.686 37.500 0.00 0.00 0.00 3.67
3361 3581 6.116126 AGAGACTTAGGCATGATAAACCAAC 58.884 40.000 0.00 0.00 0.00 3.77
3364 3584 7.806180 AGACTTAGGCATGATAAACCAACTAT 58.194 34.615 0.00 0.00 0.00 2.12
3365 3585 8.934697 AGACTTAGGCATGATAAACCAACTATA 58.065 33.333 0.00 0.00 0.00 1.31
3367 3587 9.561069 ACTTAGGCATGATAAACCAACTATAAG 57.439 33.333 0.00 0.00 0.00 1.73
3368 3588 9.561069 CTTAGGCATGATAAACCAACTATAAGT 57.439 33.333 0.00 0.00 0.00 2.24
3371 3591 9.338622 AGGCATGATAAACCAACTATAAGTTAC 57.661 33.333 0.00 0.00 36.03 2.50
3412 3638 2.487934 AGCAGTTGTCTTGTGCTGTAG 58.512 47.619 0.00 0.00 45.81 2.74
3413 3639 2.158900 AGCAGTTGTCTTGTGCTGTAGT 60.159 45.455 0.00 0.00 45.81 2.73
3414 3640 3.069586 AGCAGTTGTCTTGTGCTGTAGTA 59.930 43.478 0.00 0.00 45.81 1.82
3519 3745 5.362430 TGAAGTTTATTTGTTTGCCTGGAGT 59.638 36.000 0.00 0.00 0.00 3.85
3582 3808 1.202348 GCAGGTTCAGGTTTGCATACC 59.798 52.381 17.71 17.71 38.53 2.73
3774 4000 4.849813 TCATTCAGTGATGATCCCAGTT 57.150 40.909 0.00 0.00 31.35 3.16
3775 4001 5.955961 TCATTCAGTGATGATCCCAGTTA 57.044 39.130 0.00 0.00 31.35 2.24
3799 4025 3.055094 TGATTTACTCCCTCAGGTTCAGC 60.055 47.826 0.00 0.00 0.00 4.26
3877 4103 8.500753 TTTTATATCACGAGCTGGTAATTGTT 57.499 30.769 0.00 0.00 0.00 2.83
3878 4104 5.991328 ATATCACGAGCTGGTAATTGTTG 57.009 39.130 0.00 0.00 0.00 3.33
3889 4115 6.148150 AGCTGGTAATTGTTGAATGCATTTTG 59.852 34.615 14.33 0.00 0.00 2.44
4014 4240 7.660208 TCTTAACTGATTTCCCTTGAACACTAC 59.340 37.037 0.00 0.00 0.00 2.73
4017 4243 4.651778 TGATTTCCCTTGAACACTACCTG 58.348 43.478 0.00 0.00 0.00 4.00
4062 4288 2.580962 TGTAACATGTGTGTGTGCCAT 58.419 42.857 0.00 0.00 38.92 4.40
4063 4289 2.551887 TGTAACATGTGTGTGTGCCATC 59.448 45.455 0.00 0.00 38.92 3.51
4064 4290 1.689984 AACATGTGTGTGTGCCATCA 58.310 45.000 0.00 0.00 38.92 3.07
4065 4291 1.241165 ACATGTGTGTGTGCCATCAG 58.759 50.000 0.00 0.00 37.14 2.90
4066 4292 0.109458 CATGTGTGTGTGCCATCAGC 60.109 55.000 0.00 0.00 44.14 4.26
4067 4293 1.246056 ATGTGTGTGTGCCATCAGCC 61.246 55.000 0.00 0.00 42.71 4.85
4068 4294 2.282391 TGTGTGTGCCATCAGCCC 60.282 61.111 0.00 0.00 42.71 5.19
4069 4295 2.282391 GTGTGTGCCATCAGCCCA 60.282 61.111 0.00 0.00 42.71 5.36
4118 4799 7.825331 TGTCCCTACAAACATCATAAAAACA 57.175 32.000 0.00 0.00 30.91 2.83
4120 4801 8.865090 TGTCCCTACAAACATCATAAAAACATT 58.135 29.630 0.00 0.00 30.91 2.71
4121 4802 9.353999 GTCCCTACAAACATCATAAAAACATTC 57.646 33.333 0.00 0.00 0.00 2.67
4122 4803 9.083422 TCCCTACAAACATCATAAAAACATTCA 57.917 29.630 0.00 0.00 0.00 2.57
4123 4804 9.874205 CCCTACAAACATCATAAAAACATTCAT 57.126 29.630 0.00 0.00 0.00 2.57
4127 4808 9.128107 ACAAACATCATAAAAACATTCATCGAC 57.872 29.630 0.00 0.00 0.00 4.20
4130 4811 9.859427 AACATCATAAAAACATTCATCGACATT 57.141 25.926 0.00 0.00 0.00 2.71
4133 4814 8.894409 TCATAAAAACATTCATCGACATTGTC 57.106 30.769 6.73 6.73 0.00 3.18
4134 4815 8.510505 TCATAAAAACATTCATCGACATTGTCA 58.489 29.630 16.61 4.75 32.09 3.58
4135 4816 9.127006 CATAAAAACATTCATCGACATTGTCAA 57.873 29.630 16.61 0.00 32.09 3.18
4136 4817 9.859427 ATAAAAACATTCATCGACATTGTCAAT 57.141 25.926 16.61 0.66 32.09 2.57
4137 4818 7.801547 AAAACATTCATCGACATTGTCAATC 57.198 32.000 16.61 0.00 32.09 2.67
4138 4819 6.748333 AACATTCATCGACATTGTCAATCT 57.252 33.333 16.61 0.00 32.09 2.40
4139 4820 6.115450 ACATTCATCGACATTGTCAATCTG 57.885 37.500 16.61 7.79 32.09 2.90
4142 4823 4.002316 TCATCGACATTGTCAATCTGCAA 58.998 39.130 16.61 0.00 32.09 4.08
4146 4827 4.216042 TCGACATTGTCAATCTGCAAACAT 59.784 37.500 16.61 0.00 32.09 2.71
4151 4849 7.604549 ACATTGTCAATCTGCAAACATCATAA 58.395 30.769 0.00 0.00 0.00 1.90
4183 4881 1.813859 TCACATAGAGAACGGGCCG 59.186 57.895 27.06 27.06 0.00 6.13
4185 4883 0.249073 CACATAGAGAACGGGCCGAG 60.249 60.000 35.78 13.08 0.00 4.63
4186 4884 1.300233 CATAGAGAACGGGCCGAGC 60.300 63.158 35.78 22.99 0.00 5.03
4198 4896 3.246064 CCGAGCGGCGTAACAAAA 58.754 55.556 9.37 0.00 38.67 2.44
4199 4897 1.570475 CCGAGCGGCGTAACAAAAA 59.430 52.632 9.37 0.00 38.67 1.94
4200 4898 0.167251 CCGAGCGGCGTAACAAAAAT 59.833 50.000 9.37 0.00 38.67 1.82
4224 4922 3.902881 AAAGGACAGCTCCATGTAGAG 57.097 47.619 0.00 0.00 39.39 2.43
4458 5193 3.650942 TCCCAGATCCTACACACACTTTT 59.349 43.478 0.00 0.00 0.00 2.27
4570 5312 1.848388 AGCCATGACTTGGGATGATCA 59.152 47.619 9.29 0.00 46.55 2.92
4574 5316 1.588239 TGACTTGGGATGATCAGCCT 58.412 50.000 28.11 9.66 37.00 4.58
4588 5330 2.447443 TCAGCCTAGAACGTGATCTGT 58.553 47.619 0.00 0.00 0.00 3.41
4633 5375 2.510906 AAGCCTGCTGGTTGACGT 59.489 55.556 11.69 0.00 32.28 4.34
4645 5387 0.810031 GTTGACGTGTGGTGCTGAGT 60.810 55.000 0.00 0.00 0.00 3.41
4716 5466 3.116531 GCGTGCGTTGGGAGTACC 61.117 66.667 0.00 0.00 40.81 3.34
4742 5492 1.078214 CTGGGAATCTTGCTCGGCA 60.078 57.895 0.00 0.00 36.47 5.69
4746 5496 0.179034 GGAATCTTGCTCGGCATCCT 60.179 55.000 8.24 0.00 38.76 3.24
4757 5507 1.067250 GGCATCCTCTGACGAGAGC 59.933 63.158 0.00 0.00 44.11 4.09
4864 5614 1.351017 ACCAACAGGATCCATGTCGTT 59.649 47.619 15.82 6.14 0.00 3.85
4904 5662 4.111053 GGAAGGCGGGGGAGGAAC 62.111 72.222 0.00 0.00 0.00 3.62
4905 5663 4.468689 GAAGGCGGGGGAGGAACG 62.469 72.222 0.00 0.00 0.00 3.95
4911 5669 2.757099 GGGGGAGGAACGCGTCTA 60.757 66.667 14.44 0.00 0.00 2.59
4912 5670 2.493501 GGGGAGGAACGCGTCTAC 59.506 66.667 14.44 6.98 0.00 2.59
4913 5671 2.493501 GGGAGGAACGCGTCTACC 59.506 66.667 14.44 13.58 0.00 3.18
4914 5672 2.493501 GGAGGAACGCGTCTACCC 59.506 66.667 14.44 12.00 0.00 3.69
4915 5673 2.345760 GGAGGAACGCGTCTACCCA 61.346 63.158 14.44 0.00 0.00 4.51
4916 5674 1.139095 GAGGAACGCGTCTACCCAG 59.861 63.158 14.44 0.00 0.00 4.45
4917 5675 2.508663 GGAACGCGTCTACCCAGC 60.509 66.667 14.44 0.00 0.00 4.85
4918 5676 2.260434 GAACGCGTCTACCCAGCA 59.740 61.111 14.44 0.00 0.00 4.41
4919 5677 2.048503 AACGCGTCTACCCAGCAC 60.049 61.111 14.44 0.00 0.00 4.40
4920 5678 3.584868 AACGCGTCTACCCAGCACC 62.585 63.158 14.44 0.00 0.00 5.01
4921 5679 4.063967 CGCGTCTACCCAGCACCA 62.064 66.667 0.00 0.00 0.00 4.17
4922 5680 2.345991 GCGTCTACCCAGCACCAA 59.654 61.111 0.00 0.00 0.00 3.67
4923 5681 2.033194 GCGTCTACCCAGCACCAAC 61.033 63.158 0.00 0.00 0.00 3.77
4924 5682 1.369692 CGTCTACCCAGCACCAACA 59.630 57.895 0.00 0.00 0.00 3.33
4925 5683 0.670546 CGTCTACCCAGCACCAACAG 60.671 60.000 0.00 0.00 0.00 3.16
4926 5684 0.321653 GTCTACCCAGCACCAACAGG 60.322 60.000 0.00 0.00 0.00 4.00
4927 5685 0.472925 TCTACCCAGCACCAACAGGA 60.473 55.000 0.00 0.00 0.00 3.86
4928 5686 0.620556 CTACCCAGCACCAACAGGAT 59.379 55.000 0.00 0.00 0.00 3.24
4929 5687 0.618458 TACCCAGCACCAACAGGATC 59.382 55.000 0.00 0.00 0.00 3.36
4930 5688 1.379044 CCCAGCACCAACAGGATCC 60.379 63.158 2.48 2.48 0.00 3.36
4931 5689 1.379916 CCAGCACCAACAGGATCCA 59.620 57.895 15.82 0.00 0.00 3.41
4932 5690 0.033796 CCAGCACCAACAGGATCCAT 60.034 55.000 15.82 0.00 0.00 3.41
4933 5691 1.100510 CAGCACCAACAGGATCCATG 58.899 55.000 15.82 11.76 0.00 3.66
4934 5692 0.700564 AGCACCAACAGGATCCATGT 59.299 50.000 15.82 12.42 0.00 3.21
4935 5693 1.098050 GCACCAACAGGATCCATGTC 58.902 55.000 15.82 0.08 0.00 3.06
4936 5694 1.372582 CACCAACAGGATCCATGTCG 58.627 55.000 15.82 11.01 0.00 4.35
4937 5695 0.984230 ACCAACAGGATCCATGTCGT 59.016 50.000 15.82 11.57 0.00 4.34
4938 5696 1.066143 ACCAACAGGATCCATGTCGTC 60.066 52.381 15.82 0.00 0.00 4.20
4939 5697 1.280982 CAACAGGATCCATGTCGTCG 58.719 55.000 15.82 2.46 0.00 5.12
4940 5698 0.895530 AACAGGATCCATGTCGTCGT 59.104 50.000 15.82 0.00 0.00 4.34
4941 5699 1.758936 ACAGGATCCATGTCGTCGTA 58.241 50.000 15.82 0.00 0.00 3.43
4942 5700 1.676529 ACAGGATCCATGTCGTCGTAG 59.323 52.381 15.82 0.00 0.00 3.51
4943 5701 0.669077 AGGATCCATGTCGTCGTAGC 59.331 55.000 15.82 0.00 0.00 3.58
4944 5702 0.318784 GGATCCATGTCGTCGTAGCC 60.319 60.000 6.95 0.00 0.00 3.93
4945 5703 0.660595 GATCCATGTCGTCGTAGCCG 60.661 60.000 0.00 0.00 0.00 5.52
4946 5704 2.071844 ATCCATGTCGTCGTAGCCGG 62.072 60.000 0.00 0.00 33.95 6.13
4947 5705 2.767445 CCATGTCGTCGTAGCCGGA 61.767 63.158 5.05 0.00 33.95 5.14
4948 5706 1.298413 CATGTCGTCGTAGCCGGAG 60.298 63.158 5.05 0.00 33.95 4.63
4949 5707 1.748122 ATGTCGTCGTAGCCGGAGT 60.748 57.895 5.05 0.00 33.95 3.85
4950 5708 0.462581 ATGTCGTCGTAGCCGGAGTA 60.463 55.000 5.05 0.00 33.95 2.59
4951 5709 1.086067 TGTCGTCGTAGCCGGAGTAG 61.086 60.000 5.05 0.00 33.95 2.57
4952 5710 1.522355 TCGTCGTAGCCGGAGTAGG 60.522 63.158 5.05 1.08 33.95 3.18
4953 5711 2.541120 CGTCGTAGCCGGAGTAGGG 61.541 68.421 5.05 0.00 33.95 3.53
4954 5712 1.452833 GTCGTAGCCGGAGTAGGGT 60.453 63.158 5.05 0.00 45.09 4.34
4955 5713 1.452651 TCGTAGCCGGAGTAGGGTG 60.453 63.158 5.05 0.00 42.69 4.61
4956 5714 2.487532 CGTAGCCGGAGTAGGGTGG 61.488 68.421 5.05 0.00 42.69 4.61
5013 5771 0.915364 ATTTCACAGGAGGAGAGGGC 59.085 55.000 0.00 0.00 0.00 5.19
5038 5796 2.100252 GAGGATCGTTCGGGTTGATACA 59.900 50.000 0.00 0.00 0.00 2.29
5068 5826 0.613012 AGGGCAGTGGCATTTCCTTC 60.613 55.000 19.48 0.00 43.71 3.46
5078 5836 3.179048 GGCATTTCCTTCGTAATTGTGC 58.821 45.455 0.00 0.00 0.00 4.57
5091 5849 2.410322 ATTGTGCGCAAGTGGGAGGA 62.410 55.000 14.00 0.00 38.10 3.71
5106 5864 2.428783 GGGAGGACAAGGGGATATACCA 60.429 54.545 6.25 0.00 41.20 3.25
5131 5889 2.939756 TGTTTTTAAGTGACTGCTCGCA 59.060 40.909 0.00 0.00 0.00 5.10
5158 6024 4.524328 AGTAGCTGCTAAAAGCCACAAAAT 59.476 37.500 11.57 0.00 44.68 1.82
5176 6042 6.934083 CACAAAATAACTGGCCCTTTATTGTT 59.066 34.615 15.87 10.96 30.08 2.83
5206 6072 6.692486 ACAGTACTGGTTTCATTCTCAGTAG 58.308 40.000 26.12 0.00 41.53 2.57
5209 6075 5.808366 ACTGGTTTCATTCTCAGTAGTGA 57.192 39.130 0.00 0.00 38.52 3.41
5249 6115 7.749808 TCTGAGACTGTTTGTTACTATAGTCG 58.250 38.462 9.12 0.00 39.47 4.18
5409 6276 6.475504 TGAAATCTGCAACCTTCTTATCTCA 58.524 36.000 0.00 0.00 0.00 3.27
5443 6311 2.687700 AGCTGTCCATACTGAGCAAG 57.312 50.000 0.00 0.00 33.67 4.01
5452 6320 4.099113 TCCATACTGAGCAAGTGATCTCTG 59.901 45.833 0.00 0.00 40.26 3.35
5568 6436 4.818417 CGTACAAAACGCTGGCTG 57.182 55.556 0.00 0.00 46.10 4.85
5649 6517 6.260936 GTCTTTGTCCTGTCTGAATCTTTGAA 59.739 38.462 0.00 0.00 0.00 2.69
5939 6807 3.253188 TCTGGGAATTCTTCTTTGCAACG 59.747 43.478 0.00 0.00 0.00 4.10
5977 6845 5.411977 CCATCATCAAGACTCATATTCAGGC 59.588 44.000 0.00 0.00 0.00 4.85
6041 6911 3.058224 GTGTTTCTCTTGGTACCACATGC 60.058 47.826 16.04 2.20 0.00 4.06
6077 6948 6.543465 TCTTGGTCTGCTAATGATTTGGTATG 59.457 38.462 0.00 0.00 0.00 2.39
6216 7090 6.374417 TCTTGAAATCTTACAAGCTACCCT 57.626 37.500 0.00 0.00 41.91 4.34
6234 7114 3.260632 ACCCTTACAACCCATGCAAAATC 59.739 43.478 0.00 0.00 0.00 2.17
6445 7347 4.094294 TCTTTCCTCACAACAGAACAAACG 59.906 41.667 0.00 0.00 0.00 3.60
6485 7387 5.590530 TTTTGCTTCTTTTTGTGCTCCTA 57.409 34.783 0.00 0.00 0.00 2.94
6505 7407 7.377766 TCCTATTCTTCCTGAAAATCAAACG 57.622 36.000 0.00 0.00 38.29 3.60
6550 7452 8.721478 TCAATTTTCTACTATGTTGAACTGAGC 58.279 33.333 0.00 0.00 28.44 4.26
6643 7545 4.699735 AGTCTCTCTGTACTGACACATGAG 59.300 45.833 0.00 4.34 33.69 2.90
6651 7553 3.402628 ACTGACACATGAGTTGTACCC 57.597 47.619 0.00 0.00 36.57 3.69
6711 7613 6.039616 TGCAACAACCAACTCTTGTATTTTC 58.960 36.000 0.00 0.00 31.43 2.29
6740 7642 9.129532 GAAAAGGAGTTGATCTGGATATTTGAT 57.870 33.333 0.00 0.00 0.00 2.57
6746 7648 9.716531 GAGTTGATCTGGATATTTGATCACATA 57.283 33.333 4.10 4.10 43.96 2.29
6761 7663 2.107378 TCACATACCTGGGTTTTCAGCA 59.893 45.455 0.00 0.00 33.64 4.41
6838 7740 1.689273 ACCTGTGTCAGTCTCACCTTC 59.311 52.381 0.00 0.00 35.25 3.46
6881 7783 9.512435 GGTATCTTCATTTTCATGTCATTTGAG 57.488 33.333 0.00 0.00 0.00 3.02
6882 7784 9.017669 GTATCTTCATTTTCATGTCATTTGAGC 57.982 33.333 0.00 0.00 0.00 4.26
6883 7785 7.223260 TCTTCATTTTCATGTCATTTGAGCT 57.777 32.000 0.00 0.00 0.00 4.09
6884 7786 7.310664 TCTTCATTTTCATGTCATTTGAGCTC 58.689 34.615 6.82 6.82 0.00 4.09
6885 7787 6.829229 TCATTTTCATGTCATTTGAGCTCT 57.171 33.333 16.19 0.00 0.00 4.09
6886 7788 6.849502 TCATTTTCATGTCATTTGAGCTCTC 58.150 36.000 16.19 0.00 0.00 3.20
6887 7789 5.633830 TTTTCATGTCATTTGAGCTCTCC 57.366 39.130 16.19 0.00 0.00 3.71
6888 7790 3.986996 TCATGTCATTTGAGCTCTCCA 57.013 42.857 16.19 2.92 0.00 3.86
6889 7791 3.870274 TCATGTCATTTGAGCTCTCCAG 58.130 45.455 16.19 2.93 0.00 3.86
6890 7792 3.516700 TCATGTCATTTGAGCTCTCCAGA 59.483 43.478 16.19 5.39 0.00 3.86
6891 7793 3.325293 TGTCATTTGAGCTCTCCAGAC 57.675 47.619 16.19 16.87 0.00 3.51
6892 7794 2.902486 TGTCATTTGAGCTCTCCAGACT 59.098 45.455 16.19 0.00 0.00 3.24
6893 7795 3.326006 TGTCATTTGAGCTCTCCAGACTT 59.674 43.478 16.19 0.00 0.00 3.01
6894 7796 4.528206 TGTCATTTGAGCTCTCCAGACTTA 59.472 41.667 16.19 1.35 0.00 2.24
6895 7797 5.188555 TGTCATTTGAGCTCTCCAGACTTAT 59.811 40.000 16.19 0.00 0.00 1.73
6896 7798 6.112058 GTCATTTGAGCTCTCCAGACTTATT 58.888 40.000 16.19 0.00 0.00 1.40
6897 7799 6.036953 GTCATTTGAGCTCTCCAGACTTATTG 59.963 42.308 16.19 0.00 0.00 1.90
6898 7800 5.489792 TTTGAGCTCTCCAGACTTATTGT 57.510 39.130 16.19 0.00 0.00 2.71
6899 7801 5.489792 TTGAGCTCTCCAGACTTATTGTT 57.510 39.130 16.19 0.00 0.00 2.83
6900 7802 5.489792 TGAGCTCTCCAGACTTATTGTTT 57.510 39.130 16.19 0.00 0.00 2.83
6901 7803 5.240891 TGAGCTCTCCAGACTTATTGTTTG 58.759 41.667 16.19 0.00 0.00 2.93
6902 7804 5.221722 TGAGCTCTCCAGACTTATTGTTTGT 60.222 40.000 16.19 0.00 0.00 2.83
6903 7805 4.999950 AGCTCTCCAGACTTATTGTTTGTG 59.000 41.667 0.00 0.00 0.00 3.33
6904 7806 4.757149 GCTCTCCAGACTTATTGTTTGTGT 59.243 41.667 0.00 0.00 0.00 3.72
6905 7807 5.106908 GCTCTCCAGACTTATTGTTTGTGTC 60.107 44.000 0.00 0.00 0.00 3.67
6906 7808 6.174720 TCTCCAGACTTATTGTTTGTGTCT 57.825 37.500 0.00 0.00 38.36 3.41
6907 7809 6.223852 TCTCCAGACTTATTGTTTGTGTCTC 58.776 40.000 0.00 0.00 36.05 3.36
6908 7810 5.305585 TCCAGACTTATTGTTTGTGTCTCC 58.694 41.667 0.00 0.00 36.05 3.71
6909 7811 5.063204 CCAGACTTATTGTTTGTGTCTCCA 58.937 41.667 0.00 0.00 36.05 3.86
6910 7812 5.707298 CCAGACTTATTGTTTGTGTCTCCAT 59.293 40.000 0.00 0.00 36.05 3.41
6911 7813 6.207417 CCAGACTTATTGTTTGTGTCTCCATT 59.793 38.462 0.00 0.00 36.05 3.16
6912 7814 7.390440 CCAGACTTATTGTTTGTGTCTCCATTA 59.610 37.037 0.00 0.00 36.05 1.90
6913 7815 8.783093 CAGACTTATTGTTTGTGTCTCCATTAA 58.217 33.333 0.00 0.00 36.05 1.40
6914 7816 9.520515 AGACTTATTGTTTGTGTCTCCATTAAT 57.479 29.630 0.00 0.00 33.31 1.40
6915 7817 9.774742 GACTTATTGTTTGTGTCTCCATTAATC 57.225 33.333 0.00 0.00 0.00 1.75
6916 7818 9.295825 ACTTATTGTTTGTGTCTCCATTAATCA 57.704 29.630 0.00 0.00 0.00 2.57
6918 7820 9.906660 TTATTGTTTGTGTCTCCATTAATCAAC 57.093 29.630 0.00 0.00 0.00 3.18
6919 7821 5.996219 TGTTTGTGTCTCCATTAATCAACG 58.004 37.500 0.00 0.00 0.00 4.10
6920 7822 5.529430 TGTTTGTGTCTCCATTAATCAACGT 59.471 36.000 0.00 0.00 0.00 3.99
6921 7823 6.038825 TGTTTGTGTCTCCATTAATCAACGTT 59.961 34.615 0.00 0.00 0.00 3.99
6922 7824 5.856126 TGTGTCTCCATTAATCAACGTTC 57.144 39.130 0.00 0.00 0.00 3.95
6923 7825 4.387559 TGTGTCTCCATTAATCAACGTTCG 59.612 41.667 0.00 0.00 0.00 3.95
6924 7826 4.387862 GTGTCTCCATTAATCAACGTTCGT 59.612 41.667 0.00 0.00 0.00 3.85
6925 7827 5.574055 GTGTCTCCATTAATCAACGTTCGTA 59.426 40.000 0.00 0.00 0.00 3.43
6926 7828 5.574055 TGTCTCCATTAATCAACGTTCGTAC 59.426 40.000 0.00 0.00 0.00 3.67
6927 7829 5.803967 GTCTCCATTAATCAACGTTCGTACT 59.196 40.000 0.00 0.00 0.00 2.73
6928 7830 6.309737 GTCTCCATTAATCAACGTTCGTACTT 59.690 38.462 0.00 0.00 0.00 2.24
6929 7831 6.869913 TCTCCATTAATCAACGTTCGTACTTT 59.130 34.615 0.00 0.00 0.00 2.66
6930 7832 8.028354 TCTCCATTAATCAACGTTCGTACTTTA 58.972 33.333 0.00 0.00 0.00 1.85
6931 7833 8.531622 TCCATTAATCAACGTTCGTACTTTAA 57.468 30.769 0.00 4.22 0.00 1.52
6932 7834 9.153721 TCCATTAATCAACGTTCGTACTTTAAT 57.846 29.630 0.00 6.06 0.00 1.40
6933 7835 9.417284 CCATTAATCAACGTTCGTACTTTAATC 57.583 33.333 0.00 0.00 0.00 1.75
6978 7880 7.368480 TCATTGATGTTCTGTAACTGTCATG 57.632 36.000 0.00 0.00 36.51 3.07
7033 7935 3.391049 GTTGGTCTGGAACACTGTAGTC 58.609 50.000 0.00 0.00 0.00 2.59
7323 8243 1.228124 CTCTCCAACCCGCCACAAA 60.228 57.895 0.00 0.00 0.00 2.83
7324 8244 0.821711 CTCTCCAACCCGCCACAAAA 60.822 55.000 0.00 0.00 0.00 2.44
7429 8349 4.706962 AGTTGGATGAACTTTAGGGATTGC 59.293 41.667 0.00 0.00 42.70 3.56
7630 8551 3.877508 AGCACTTCAACTACAAGTTCACC 59.122 43.478 0.00 0.00 36.03 4.02
7675 8596 6.825610 TGATACCAAGATTGCCTTTGTTTTT 58.174 32.000 0.00 0.00 33.41 1.94
7705 8626 1.592669 CGGGGATCTGCATCACGTC 60.593 63.158 0.00 0.00 32.43 4.34
7730 8662 4.444388 TCGATTCGAAAACTGTGTCAGAAG 59.556 41.667 6.24 0.00 31.96 2.85
7802 8738 3.188460 TCACGTTATCTTTTGCAAGCTCC 59.812 43.478 0.00 0.00 0.00 4.70
7815 8751 2.381445 AGCTCCTTGGCTTGTAGCT 58.619 52.632 0.00 0.00 41.99 3.32
7904 8840 8.337532 CGATTACACATCATCAGCAGATAAAAA 58.662 33.333 0.00 0.00 31.88 1.94
7907 8843 6.270815 ACACATCATCAGCAGATAAAAATGC 58.729 36.000 0.00 0.00 42.87 3.56
7920 8856 7.626240 GCAGATAAAAATGCTACTGTACTGCAA 60.626 37.037 0.00 0.00 43.11 4.08
7946 8882 3.977244 CACCCGCCCAAGTGTTGC 61.977 66.667 0.00 0.00 0.00 4.17
7986 8922 2.027625 GGGCAGTTGTCCGAGTTCG 61.028 63.158 0.00 0.00 39.44 3.95
8060 8996 2.126502 CACACGCGGGGCAAATTC 60.127 61.111 15.46 0.00 0.00 2.17
8079 9017 0.384477 CCGTAGATACTCGAGCACGC 60.384 60.000 13.61 0.00 39.58 5.34
8121 9063 4.260990 CGTGTACATTGCCTTTCACAAAGA 60.261 41.667 0.00 0.00 41.02 2.52
8135 9077 3.119459 TCACAAAGACGATCTCTACTGCC 60.119 47.826 0.00 0.00 0.00 4.85
8142 9084 1.876799 CGATCTCTACTGCCACGAGAT 59.123 52.381 0.00 0.00 44.70 2.75
8149 9091 1.102154 ACTGCCACGAGATGAGAGAG 58.898 55.000 0.00 0.00 0.00 3.20
8152 9094 0.248990 GCCACGAGATGAGAGAGCAG 60.249 60.000 0.00 0.00 0.00 4.24
8159 9101 3.052036 GAGATGAGAGAGCAGCGATTTC 58.948 50.000 0.00 0.00 0.00 2.17
8160 9102 2.694628 AGATGAGAGAGCAGCGATTTCT 59.305 45.455 0.00 0.00 0.00 2.52
8161 9103 3.888323 AGATGAGAGAGCAGCGATTTCTA 59.112 43.478 0.00 0.00 0.00 2.10
8163 9105 4.039151 TGAGAGAGCAGCGATTTCTAAG 57.961 45.455 0.00 0.00 0.00 2.18
8164 9106 3.696548 TGAGAGAGCAGCGATTTCTAAGA 59.303 43.478 0.00 0.00 0.00 2.10
8165 9107 4.340666 TGAGAGAGCAGCGATTTCTAAGAT 59.659 41.667 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.823647 CTTTGTACTCCAAATAGATCATGTACT 57.176 33.333 0.00 0.00 42.02 2.73
1 2 8.552034 GCTTTGTACTCCAAATAGATCATGTAC 58.448 37.037 0.00 0.00 42.02 2.90
2 3 8.264347 TGCTTTGTACTCCAAATAGATCATGTA 58.736 33.333 0.00 0.00 42.02 2.29
3 4 7.112122 TGCTTTGTACTCCAAATAGATCATGT 58.888 34.615 0.00 0.00 42.02 3.21
4 5 7.558161 TGCTTTGTACTCCAAATAGATCATG 57.442 36.000 0.00 0.00 42.02 3.07
5 6 7.201767 GCTTGCTTTGTACTCCAAATAGATCAT 60.202 37.037 0.00 0.00 42.02 2.45
6 7 6.094048 GCTTGCTTTGTACTCCAAATAGATCA 59.906 38.462 0.00 0.00 42.02 2.92
7 8 6.458888 GGCTTGCTTTGTACTCCAAATAGATC 60.459 42.308 0.00 0.00 42.02 2.75
8 9 5.358160 GGCTTGCTTTGTACTCCAAATAGAT 59.642 40.000 0.00 0.00 42.02 1.98
9 10 4.700213 GGCTTGCTTTGTACTCCAAATAGA 59.300 41.667 0.00 0.00 42.02 1.98
10 11 4.458989 TGGCTTGCTTTGTACTCCAAATAG 59.541 41.667 0.00 0.00 42.02 1.73
11 12 4.402829 TGGCTTGCTTTGTACTCCAAATA 58.597 39.130 0.00 0.00 42.02 1.40
12 13 3.230134 TGGCTTGCTTTGTACTCCAAAT 58.770 40.909 0.00 0.00 42.02 2.32
13 14 2.622942 CTGGCTTGCTTTGTACTCCAAA 59.377 45.455 0.00 0.00 40.71 3.28
14 15 2.158682 TCTGGCTTGCTTTGTACTCCAA 60.159 45.455 0.00 0.00 0.00 3.53
15 16 1.419762 TCTGGCTTGCTTTGTACTCCA 59.580 47.619 0.00 0.00 0.00 3.86
16 17 2.185004 TCTGGCTTGCTTTGTACTCC 57.815 50.000 0.00 0.00 0.00 3.85
17 18 4.938226 ACTATTCTGGCTTGCTTTGTACTC 59.062 41.667 0.00 0.00 0.00 2.59
18 19 4.911390 ACTATTCTGGCTTGCTTTGTACT 58.089 39.130 0.00 0.00 0.00 2.73
19 20 5.629079 AACTATTCTGGCTTGCTTTGTAC 57.371 39.130 0.00 0.00 0.00 2.90
20 21 6.472887 AGTAACTATTCTGGCTTGCTTTGTA 58.527 36.000 0.00 0.00 0.00 2.41
21 22 5.316987 AGTAACTATTCTGGCTTGCTTTGT 58.683 37.500 0.00 0.00 0.00 2.83
22 23 5.886960 AGTAACTATTCTGGCTTGCTTTG 57.113 39.130 0.00 0.00 0.00 2.77
23 24 6.712276 ACTAGTAACTATTCTGGCTTGCTTT 58.288 36.000 0.00 0.00 0.00 3.51
24 25 6.155393 AGACTAGTAACTATTCTGGCTTGCTT 59.845 38.462 0.00 0.00 27.41 3.91
25 26 5.659079 AGACTAGTAACTATTCTGGCTTGCT 59.341 40.000 0.00 0.00 27.41 3.91
26 27 5.908341 AGACTAGTAACTATTCTGGCTTGC 58.092 41.667 0.00 0.00 27.41 4.01
27 28 7.921745 GGTTAGACTAGTAACTATTCTGGCTTG 59.078 40.741 8.14 0.00 33.98 4.01
28 29 7.069702 GGGTTAGACTAGTAACTATTCTGGCTT 59.930 40.741 8.14 0.00 33.98 4.35
29 30 6.550481 GGGTTAGACTAGTAACTATTCTGGCT 59.450 42.308 8.14 0.00 33.98 4.75
30 31 6.323225 TGGGTTAGACTAGTAACTATTCTGGC 59.677 42.308 8.14 0.00 33.98 4.85
31 32 7.893124 TGGGTTAGACTAGTAACTATTCTGG 57.107 40.000 8.14 0.00 33.98 3.86
32 33 8.915036 ACATGGGTTAGACTAGTAACTATTCTG 58.085 37.037 8.14 0.00 33.98 3.02
33 34 9.490083 AACATGGGTTAGACTAGTAACTATTCT 57.510 33.333 8.14 0.00 34.87 2.40
36 37 8.702819 GGAAACATGGGTTAGACTAGTAACTAT 58.297 37.037 8.14 2.26 35.82 2.12
37 38 7.897565 AGGAAACATGGGTTAGACTAGTAACTA 59.102 37.037 8.14 0.00 35.82 2.24
38 39 6.729569 AGGAAACATGGGTTAGACTAGTAACT 59.270 38.462 8.14 0.00 35.82 2.24
39 40 6.944096 AGGAAACATGGGTTAGACTAGTAAC 58.056 40.000 0.00 0.00 35.82 2.50
40 41 8.669055 TTAGGAAACATGGGTTAGACTAGTAA 57.331 34.615 0.00 0.00 35.82 2.24
41 42 8.849543 ATTAGGAAACATGGGTTAGACTAGTA 57.150 34.615 0.00 0.00 35.82 1.82
42 43 7.750947 ATTAGGAAACATGGGTTAGACTAGT 57.249 36.000 0.00 0.00 35.82 2.57
43 44 8.701895 TGTATTAGGAAACATGGGTTAGACTAG 58.298 37.037 0.00 0.00 35.82 2.57
44 45 8.612486 TGTATTAGGAAACATGGGTTAGACTA 57.388 34.615 0.00 0.00 35.82 2.59
45 46 7.504926 TGTATTAGGAAACATGGGTTAGACT 57.495 36.000 0.00 0.00 35.82 3.24
46 47 8.747538 ATTGTATTAGGAAACATGGGTTAGAC 57.252 34.615 0.00 0.00 35.82 2.59
47 48 8.553153 TGATTGTATTAGGAAACATGGGTTAGA 58.447 33.333 0.00 0.00 35.82 2.10
48 49 8.621286 GTGATTGTATTAGGAAACATGGGTTAG 58.379 37.037 0.00 0.00 35.82 2.34
49 50 8.110271 TGTGATTGTATTAGGAAACATGGGTTA 58.890 33.333 0.00 0.00 35.82 2.85
50 51 6.951198 TGTGATTGTATTAGGAAACATGGGTT 59.049 34.615 0.00 0.00 39.43 4.11
51 52 6.489603 TGTGATTGTATTAGGAAACATGGGT 58.510 36.000 0.00 0.00 0.00 4.51
52 53 7.587037 ATGTGATTGTATTAGGAAACATGGG 57.413 36.000 0.00 0.00 0.00 4.00
53 54 9.950680 GTAATGTGATTGTATTAGGAAACATGG 57.049 33.333 0.00 0.00 0.00 3.66
56 57 9.952030 TGAGTAATGTGATTGTATTAGGAAACA 57.048 29.630 0.00 0.00 0.00 2.83
59 60 9.952030 TGTTGAGTAATGTGATTGTATTAGGAA 57.048 29.630 0.00 0.00 0.00 3.36
60 61 9.378551 GTGTTGAGTAATGTGATTGTATTAGGA 57.621 33.333 0.00 0.00 0.00 2.94
61 62 9.383519 AGTGTTGAGTAATGTGATTGTATTAGG 57.616 33.333 0.00 0.00 0.00 2.69
64 65 9.507329 AAGAGTGTTGAGTAATGTGATTGTATT 57.493 29.630 0.00 0.00 0.00 1.89
65 66 9.507329 AAAGAGTGTTGAGTAATGTGATTGTAT 57.493 29.630 0.00 0.00 0.00 2.29
66 67 8.773645 CAAAGAGTGTTGAGTAATGTGATTGTA 58.226 33.333 0.00 0.00 0.00 2.41
67 68 7.283127 ACAAAGAGTGTTGAGTAATGTGATTGT 59.717 33.333 0.00 0.00 37.01 2.71
68 69 7.642669 ACAAAGAGTGTTGAGTAATGTGATTG 58.357 34.615 0.00 0.00 37.01 2.67
69 70 7.807977 ACAAAGAGTGTTGAGTAATGTGATT 57.192 32.000 0.00 0.00 37.01 2.57
91 92 9.823098 CAATCAGAAAATGTTTGTTTTTCAACA 57.177 25.926 10.47 0.00 42.72 3.33
92 93 8.787884 GCAATCAGAAAATGTTTGTTTTTCAAC 58.212 29.630 10.47 0.00 42.72 3.18
93 94 8.728833 AGCAATCAGAAAATGTTTGTTTTTCAA 58.271 25.926 10.47 0.91 42.72 2.69
94 95 8.176365 CAGCAATCAGAAAATGTTTGTTTTTCA 58.824 29.630 10.47 0.00 42.72 2.69
95 96 7.641020 CCAGCAATCAGAAAATGTTTGTTTTTC 59.359 33.333 1.62 1.62 39.70 2.29
96 97 7.474190 CCAGCAATCAGAAAATGTTTGTTTTT 58.526 30.769 0.00 0.00 39.70 1.94
289 290 6.853872 GTGACTCGCAATGTAAAATTACAACA 59.146 34.615 9.82 0.00 45.74 3.33
355 356 2.137177 GACCAGCAACTAGGGGGCAA 62.137 60.000 0.00 0.00 0.00 4.52
356 357 2.531685 ACCAGCAACTAGGGGGCA 60.532 61.111 0.00 0.00 0.00 5.36
437 438 2.830370 CTGGGGAAATGGCGGCTC 60.830 66.667 11.43 0.00 0.00 4.70
674 846 0.640768 CGAACGAAATCTGGACTCGC 59.359 55.000 0.00 0.00 36.03 5.03
676 848 1.656095 CTGCGAACGAAATCTGGACTC 59.344 52.381 0.00 0.00 0.00 3.36
679 851 1.351430 CGCTGCGAACGAAATCTGGA 61.351 55.000 18.66 0.00 0.00 3.86
680 852 1.059369 CGCTGCGAACGAAATCTGG 59.941 57.895 18.66 0.00 0.00 3.86
681 853 1.578618 GCGCTGCGAACGAAATCTG 60.579 57.895 28.07 0.00 0.00 2.90
682 854 2.740714 GGCGCTGCGAACGAAATCT 61.741 57.895 28.07 0.00 0.00 2.40
683 855 2.276680 GGCGCTGCGAACGAAATC 60.277 61.111 28.07 4.75 0.00 2.17
684 856 3.799755 GGGCGCTGCGAACGAAAT 61.800 61.111 28.07 0.00 0.00 2.17
774 953 4.736631 GTCGCGCGGCCTGTTTTC 62.737 66.667 31.69 5.63 0.00 2.29
1060 1239 3.186345 TCTCACCGGAGATTACGCT 57.814 52.632 9.46 0.00 45.12 5.07
1183 1363 1.609783 GGACAGCTACAGCCCCATT 59.390 57.895 0.00 0.00 43.38 3.16
1286 1466 2.026641 GAGCAAATTGGCATCCTGCTA 58.973 47.619 15.13 0.00 43.19 3.49
1287 1467 0.822164 GAGCAAATTGGCATCCTGCT 59.178 50.000 15.08 15.08 45.71 4.24
1288 1468 0.526954 CGAGCAAATTGGCATCCTGC 60.527 55.000 7.75 7.00 44.08 4.85
1289 1469 0.101759 CCGAGCAAATTGGCATCCTG 59.898 55.000 7.75 0.00 35.83 3.86
1290 1470 0.034186 TCCGAGCAAATTGGCATCCT 60.034 50.000 7.75 0.00 35.83 3.24
1291 1471 1.035139 ATCCGAGCAAATTGGCATCC 58.965 50.000 7.75 0.00 35.83 3.51
1292 1472 2.877043 AATCCGAGCAAATTGGCATC 57.123 45.000 7.75 1.12 35.83 3.91
1293 1473 4.734398 TTAAATCCGAGCAAATTGGCAT 57.266 36.364 7.75 0.00 35.83 4.40
1294 1474 4.527509 TTTAAATCCGAGCAAATTGGCA 57.472 36.364 7.75 0.00 35.83 4.92
1295 1475 4.869861 ACATTTAAATCCGAGCAAATTGGC 59.130 37.500 0.00 0.00 31.52 4.52
1296 1476 5.291614 CCACATTTAAATCCGAGCAAATTGG 59.708 40.000 0.00 0.00 0.00 3.16
1297 1477 5.220453 GCCACATTTAAATCCGAGCAAATTG 60.220 40.000 0.00 0.00 0.00 2.32
1298 1478 4.869861 GCCACATTTAAATCCGAGCAAATT 59.130 37.500 0.00 0.00 0.00 1.82
1299 1479 4.432712 GCCACATTTAAATCCGAGCAAAT 58.567 39.130 0.00 0.00 0.00 2.32
1300 1480 3.367910 GGCCACATTTAAATCCGAGCAAA 60.368 43.478 0.00 0.00 0.00 3.68
1301 1481 2.165437 GGCCACATTTAAATCCGAGCAA 59.835 45.455 0.00 0.00 0.00 3.91
1302 1482 1.748493 GGCCACATTTAAATCCGAGCA 59.252 47.619 0.00 0.00 0.00 4.26
1303 1483 2.024414 AGGCCACATTTAAATCCGAGC 58.976 47.619 5.01 0.00 0.00 5.03
1304 1484 2.223572 GCAGGCCACATTTAAATCCGAG 60.224 50.000 5.01 0.00 0.00 4.63
1305 1485 1.748493 GCAGGCCACATTTAAATCCGA 59.252 47.619 5.01 0.00 0.00 4.55
1306 1486 1.533756 CGCAGGCCACATTTAAATCCG 60.534 52.381 5.01 0.00 0.00 4.18
1307 1487 1.802508 GCGCAGGCCACATTTAAATCC 60.803 52.381 5.01 0.00 0.00 3.01
1308 1488 1.135141 TGCGCAGGCCACATTTAAATC 60.135 47.619 5.66 0.00 38.85 2.17
1309 1489 0.894141 TGCGCAGGCCACATTTAAAT 59.106 45.000 5.66 0.00 38.85 1.40
1310 1490 0.038709 GTGCGCAGGCCACATTTAAA 60.039 50.000 12.22 0.00 38.85 1.52
1347 1553 9.853555 TGATAAAACAAAATCATGATGTACCAC 57.146 29.630 9.46 0.00 0.00 4.16
1381 1587 2.231235 TCATACTGAAACTCTGCGCTCA 59.769 45.455 9.73 1.07 0.00 4.26
1416 1622 3.665323 GCTATAATAGCGCATGTGCACAC 60.665 47.826 31.29 9.77 42.62 3.82
1474 1680 9.226606 TCCATAAAATACGAGTGTGATTTTTCT 57.773 29.630 0.00 0.00 35.14 2.52
1477 1683 9.840427 CTTTCCATAAAATACGAGTGTGATTTT 57.160 29.630 0.00 0.00 36.83 1.82
1478 1684 9.010029 ACTTTCCATAAAATACGAGTGTGATTT 57.990 29.630 0.00 0.00 0.00 2.17
1593 1799 1.605058 ATCACTGACTCCCGTTCCCG 61.605 60.000 0.00 0.00 0.00 5.14
1599 1805 2.893637 CCTGTAAATCACTGACTCCCG 58.106 52.381 0.00 0.00 0.00 5.14
1891 2101 0.751452 TTGCAATGCAGCCAAGTTCA 59.249 45.000 8.31 0.00 40.61 3.18
2136 2346 8.575649 AAGAAGATAAATGGAATGTAAACGGT 57.424 30.769 0.00 0.00 0.00 4.83
2186 2396 5.979288 ACATGTATCGGGTAGAAGATACC 57.021 43.478 0.00 0.00 45.08 2.73
2199 2409 7.358435 CGGATCTAACTAAAGCAACATGTATCG 60.358 40.741 0.00 0.00 0.00 2.92
2224 2434 3.146618 AGAAGCCGTGTTACTATGACG 57.853 47.619 0.00 0.00 0.00 4.35
2228 2438 6.370718 CCAACTTTAAGAAGCCGTGTTACTAT 59.629 38.462 0.00 0.00 36.29 2.12
2238 2448 5.977489 ACAATACCCAACTTTAAGAAGCC 57.023 39.130 0.00 0.00 36.29 4.35
2279 2490 8.372459 AGTTAGGATACAAAACACAGTATGTCA 58.628 33.333 0.00 0.00 45.61 3.58
2306 2517 7.149307 TCCCGGATTTCTGAAAATAAACAAAC 58.851 34.615 0.73 0.00 35.21 2.93
2310 2521 6.753107 TCTCCCGGATTTCTGAAAATAAAC 57.247 37.500 0.73 0.00 35.21 2.01
2365 2576 1.541588 GTCCTGAATGGGTGCTTTGTC 59.458 52.381 0.00 0.00 36.20 3.18
2777 2988 2.282701 ACACATGATTCATTTGCGCC 57.717 45.000 4.18 0.00 0.00 6.53
3016 3228 6.894339 TTTTCTCAAGGTCAAATAAGGTCC 57.106 37.500 0.00 0.00 0.00 4.46
3106 3325 3.496331 ACCCAACACCCTAAAATGTCAG 58.504 45.455 0.00 0.00 0.00 3.51
3315 3535 9.605275 TCTCTAAGATGACCAAATATTGTTCTG 57.395 33.333 0.00 0.00 0.00 3.02
3519 3745 9.243637 CATCAATTTTCAAAAACGAACTCCTTA 57.756 29.630 0.00 0.00 0.00 2.69
3582 3808 1.474077 GGCCCAAGATACAGCACAAAG 59.526 52.381 0.00 0.00 0.00 2.77
3774 4000 6.632672 GCTGAACCTGAGGGAGTAAATCAATA 60.633 42.308 2.38 0.00 36.25 1.90
3775 4001 5.749462 CTGAACCTGAGGGAGTAAATCAAT 58.251 41.667 2.38 0.00 36.25 2.57
3799 4025 1.251251 CCCCAAAGAACAGCTTCCAG 58.749 55.000 0.00 0.00 35.24 3.86
3877 4103 8.980610 CAATTACTTCAGAACAAAATGCATTCA 58.019 29.630 13.38 0.00 0.00 2.57
3878 4104 8.981647 ACAATTACTTCAGAACAAAATGCATTC 58.018 29.630 13.38 0.00 0.00 2.67
4064 4290 9.359653 GCTAAATGGATATAATAATGATGGGCT 57.640 33.333 0.00 0.00 0.00 5.19
4065 4291 9.359653 AGCTAAATGGATATAATAATGATGGGC 57.640 33.333 0.00 0.00 0.00 5.36
4101 4327 9.128107 GTCGATGAATGTTTTTATGATGTTTGT 57.872 29.630 0.00 0.00 0.00 2.83
4112 4793 8.084073 AGATTGACAATGTCGATGAATGTTTTT 58.916 29.630 19.96 0.00 36.86 1.94
4116 4797 5.448225 GCAGATTGACAATGTCGATGAATGT 60.448 40.000 19.96 4.64 36.86 2.71
4117 4798 4.968181 GCAGATTGACAATGTCGATGAATG 59.032 41.667 19.96 15.39 36.86 2.67
4118 4799 4.637091 TGCAGATTGACAATGTCGATGAAT 59.363 37.500 19.96 8.45 36.86 2.57
4120 4801 3.598299 TGCAGATTGACAATGTCGATGA 58.402 40.909 19.96 1.27 36.86 2.92
4121 4802 4.345271 TTGCAGATTGACAATGTCGATG 57.655 40.909 19.96 9.93 36.86 3.84
4122 4803 4.216042 TGTTTGCAGATTGACAATGTCGAT 59.784 37.500 15.50 15.50 39.15 3.59
4123 4804 3.563390 TGTTTGCAGATTGACAATGTCGA 59.437 39.130 5.14 5.70 34.95 4.20
4124 4805 3.887741 TGTTTGCAGATTGACAATGTCG 58.112 40.909 5.14 0.00 34.95 4.35
4125 4806 5.463286 TGATGTTTGCAGATTGACAATGTC 58.537 37.500 5.14 6.41 0.00 3.06
4127 4808 8.468720 TTTATGATGTTTGCAGATTGACAATG 57.531 30.769 5.14 0.00 0.00 2.82
4130 4811 7.924947 TGTTTTTATGATGTTTGCAGATTGACA 59.075 29.630 0.00 0.00 0.00 3.58
4133 4814 8.927721 TGATGTTTTTATGATGTTTGCAGATTG 58.072 29.630 0.00 0.00 0.00 2.67
4134 4815 9.661563 ATGATGTTTTTATGATGTTTGCAGATT 57.338 25.926 0.00 0.00 0.00 2.40
4135 4816 9.661563 AATGATGTTTTTATGATGTTTGCAGAT 57.338 25.926 0.00 0.00 0.00 2.90
4136 4817 8.927721 CAATGATGTTTTTATGATGTTTGCAGA 58.072 29.630 0.00 0.00 0.00 4.26
4137 4818 8.714179 ACAATGATGTTTTTATGATGTTTGCAG 58.286 29.630 0.00 0.00 35.91 4.41
4138 4819 8.604640 ACAATGATGTTTTTATGATGTTTGCA 57.395 26.923 0.00 0.00 35.91 4.08
4139 4820 8.928733 AGACAATGATGTTTTTATGATGTTTGC 58.071 29.630 0.00 0.00 40.74 3.68
4142 4823 9.630098 GTGAGACAATGATGTTTTTATGATGTT 57.370 29.630 0.00 0.00 40.74 2.71
4181 4879 0.167251 ATTTTTGTTACGCCGCTCGG 59.833 50.000 3.56 3.56 43.86 4.63
4182 4880 2.791417 TATTTTTGTTACGCCGCTCG 57.209 45.000 0.00 0.00 45.38 5.03
4183 4881 5.809373 TTTTTATTTTTGTTACGCCGCTC 57.191 34.783 0.00 0.00 0.00 5.03
4224 4922 1.002033 CTTCCACAGCAGCACAACTTC 60.002 52.381 0.00 0.00 0.00 3.01
4458 5193 0.032952 GTGCGAACACCCAGTAGACA 59.967 55.000 0.00 0.00 41.21 3.41
4562 5304 2.362397 TCACGTTCTAGGCTGATCATCC 59.638 50.000 7.55 7.55 0.00 3.51
4570 5312 2.094494 CACACAGATCACGTTCTAGGCT 60.094 50.000 0.00 0.00 0.00 4.58
4645 5387 1.304879 GCTACAACCCCCAATGCCA 60.305 57.895 0.00 0.00 0.00 4.92
4669 5411 1.402896 GGATCCCGCTGTCCAGATCA 61.403 60.000 0.00 0.00 37.46 2.92
4697 5447 4.382320 TACTCCCAACGCACGCCC 62.382 66.667 0.00 0.00 0.00 6.13
4746 5496 2.871099 GCTCGTGCTCTCGTCAGA 59.129 61.111 1.41 0.00 36.03 3.27
4770 5520 2.128507 CCTCTGTCTAGCCGTCCCC 61.129 68.421 0.00 0.00 0.00 4.81
4771 5521 1.076923 TCCTCTGTCTAGCCGTCCC 60.077 63.158 0.00 0.00 0.00 4.46
4780 5530 2.681778 CCCGCCACTCCTCTGTCT 60.682 66.667 0.00 0.00 0.00 3.41
4895 5653 2.493501 GTAGACGCGTTCCTCCCC 59.506 66.667 15.53 0.00 0.00 4.81
4898 5656 1.139095 CTGGGTAGACGCGTTCCTC 59.861 63.158 15.53 4.78 0.00 3.71
4899 5657 3.003113 GCTGGGTAGACGCGTTCCT 62.003 63.158 15.53 9.81 0.00 3.36
4901 5659 2.092882 GTGCTGGGTAGACGCGTTC 61.093 63.158 15.53 6.92 0.00 3.95
4902 5660 2.048503 GTGCTGGGTAGACGCGTT 60.049 61.111 15.53 6.16 0.00 4.84
4903 5661 4.065281 GGTGCTGGGTAGACGCGT 62.065 66.667 13.85 13.85 0.00 6.01
4904 5662 3.583276 TTGGTGCTGGGTAGACGCG 62.583 63.158 3.53 3.53 0.00 6.01
4905 5663 2.033194 GTTGGTGCTGGGTAGACGC 61.033 63.158 0.00 0.00 0.00 5.19
4906 5664 0.670546 CTGTTGGTGCTGGGTAGACG 60.671 60.000 0.00 0.00 0.00 4.18
4908 5666 0.472925 TCCTGTTGGTGCTGGGTAGA 60.473 55.000 0.00 0.00 34.23 2.59
4909 5667 0.620556 ATCCTGTTGGTGCTGGGTAG 59.379 55.000 0.00 0.00 34.23 3.18
4910 5668 0.618458 GATCCTGTTGGTGCTGGGTA 59.382 55.000 0.00 0.00 34.23 3.69
4911 5669 1.380302 GATCCTGTTGGTGCTGGGT 59.620 57.895 0.00 0.00 34.23 4.51
4912 5670 1.379044 GGATCCTGTTGGTGCTGGG 60.379 63.158 3.84 0.00 34.23 4.45
4913 5671 0.033796 ATGGATCCTGTTGGTGCTGG 60.034 55.000 14.23 0.00 34.23 4.85
4914 5672 1.100510 CATGGATCCTGTTGGTGCTG 58.899 55.000 14.23 0.00 34.23 4.41
4915 5673 0.700564 ACATGGATCCTGTTGGTGCT 59.299 50.000 14.23 0.00 34.23 4.40
4916 5674 1.098050 GACATGGATCCTGTTGGTGC 58.902 55.000 14.23 0.00 34.23 5.01
4917 5675 1.339055 ACGACATGGATCCTGTTGGTG 60.339 52.381 24.10 14.35 33.13 4.17
4918 5676 0.984230 ACGACATGGATCCTGTTGGT 59.016 50.000 24.10 18.11 33.13 3.67
4919 5677 1.656652 GACGACATGGATCCTGTTGG 58.343 55.000 24.10 17.68 33.13 3.77
4920 5678 1.280982 CGACGACATGGATCCTGTTG 58.719 55.000 21.11 21.11 34.71 3.33
4921 5679 0.895530 ACGACGACATGGATCCTGTT 59.104 50.000 14.23 1.11 0.00 3.16
4922 5680 1.676529 CTACGACGACATGGATCCTGT 59.323 52.381 14.23 14.33 0.00 4.00
4923 5681 1.600663 GCTACGACGACATGGATCCTG 60.601 57.143 14.23 11.14 0.00 3.86
4924 5682 0.669077 GCTACGACGACATGGATCCT 59.331 55.000 14.23 0.00 0.00 3.24
4925 5683 0.318784 GGCTACGACGACATGGATCC 60.319 60.000 4.20 4.20 0.00 3.36
4926 5684 0.660595 CGGCTACGACGACATGGATC 60.661 60.000 0.00 0.00 44.60 3.36
4927 5685 1.359117 CGGCTACGACGACATGGAT 59.641 57.895 0.00 0.00 44.60 3.41
4928 5686 2.767445 CCGGCTACGACGACATGGA 61.767 63.158 0.00 0.00 44.60 3.41
4929 5687 2.278596 CCGGCTACGACGACATGG 60.279 66.667 0.00 0.00 44.60 3.66
4930 5688 1.298413 CTCCGGCTACGACGACATG 60.298 63.158 0.00 0.00 44.60 3.21
4931 5689 0.462581 TACTCCGGCTACGACGACAT 60.463 55.000 0.00 0.00 44.60 3.06
4932 5690 1.079197 TACTCCGGCTACGACGACA 60.079 57.895 0.00 0.00 44.60 4.35
4933 5691 1.640604 CTACTCCGGCTACGACGAC 59.359 63.158 0.00 0.00 44.60 4.34
4934 5692 1.522355 CCTACTCCGGCTACGACGA 60.522 63.158 0.00 0.00 44.60 4.20
4935 5693 2.541120 CCCTACTCCGGCTACGACG 61.541 68.421 0.00 0.00 44.60 5.12
4936 5694 1.452833 ACCCTACTCCGGCTACGAC 60.453 63.158 0.00 0.00 44.60 4.34
4937 5695 1.452651 CACCCTACTCCGGCTACGA 60.453 63.158 0.00 0.00 44.60 3.43
4938 5696 2.487532 CCACCCTACTCCGGCTACG 61.488 68.421 0.00 0.00 40.55 3.51
4939 5697 2.794028 GCCACCCTACTCCGGCTAC 61.794 68.421 0.00 0.00 41.50 3.58
4940 5698 2.443390 GCCACCCTACTCCGGCTA 60.443 66.667 0.00 0.00 41.50 3.93
4943 5701 3.834799 GACGCCACCCTACTCCGG 61.835 72.222 0.00 0.00 0.00 5.14
4944 5702 4.189188 CGACGCCACCCTACTCCG 62.189 72.222 0.00 0.00 0.00 4.63
4945 5703 3.834799 CCGACGCCACCCTACTCC 61.835 72.222 0.00 0.00 0.00 3.85
4946 5704 3.834799 CCCGACGCCACCCTACTC 61.835 72.222 0.00 0.00 0.00 2.59
4947 5705 4.371417 TCCCGACGCCACCCTACT 62.371 66.667 0.00 0.00 0.00 2.57
4948 5706 3.834799 CTCCCGACGCCACCCTAC 61.835 72.222 0.00 0.00 0.00 3.18
5027 5785 4.898607 CCCCCATGTATCAACCCG 57.101 61.111 0.00 0.00 0.00 5.28
5068 5826 0.454285 CCCACTTGCGCACAATTACG 60.454 55.000 11.12 0.00 34.61 3.18
5078 5836 1.672356 CCTTGTCCTCCCACTTGCG 60.672 63.158 0.00 0.00 0.00 4.85
5091 5849 5.530176 AACAAACTGGTATATCCCCTTGT 57.470 39.130 0.00 0.00 34.74 3.16
5106 5864 5.569413 CGAGCAGTCACTTAAAAACAAACT 58.431 37.500 0.00 0.00 0.00 2.66
5124 5882 1.216444 CAGCTACTTCCTGCGAGCA 59.784 57.895 0.00 0.00 37.40 4.26
5131 5889 2.305927 TGGCTTTTAGCAGCTACTTCCT 59.694 45.455 0.00 0.00 44.75 3.36
5137 5895 6.208599 AGTTATTTTGTGGCTTTTAGCAGCTA 59.791 34.615 0.00 0.00 44.75 3.32
5158 6024 4.120946 ACCAACAATAAAGGGCCAGTTA 57.879 40.909 6.18 3.99 0.00 2.24
5176 6042 6.597562 AGAATGAAACCAGTACTGTTTACCA 58.402 36.000 21.18 14.51 0.00 3.25
5206 6072 8.247562 AGTCTCAGAAGTTGTATTGTATCTCAC 58.752 37.037 0.00 0.00 0.00 3.51
5209 6075 8.128322 ACAGTCTCAGAAGTTGTATTGTATCT 57.872 34.615 0.00 0.00 0.00 1.98
5443 6311 2.608546 GAGCTGCAACATCAGAGATCAC 59.391 50.000 1.02 0.00 36.19 3.06
5452 6320 1.264020 TGACAAACGAGCTGCAACATC 59.736 47.619 1.02 0.00 0.00 3.06
5568 6436 4.060900 TGAGATGTTGTGAGTGAGAAAGC 58.939 43.478 0.00 0.00 0.00 3.51
5788 6656 8.656849 CATACTTGGAACTAGTTACATGTGTTC 58.343 37.037 33.80 12.52 40.59 3.18
5924 6792 4.466828 CGATCAACGTTGCAAAGAAGAAT 58.533 39.130 23.47 8.17 37.22 2.40
5939 6807 0.107214 TGATGGCCTTCCCGATCAAC 60.107 55.000 15.62 0.00 35.87 3.18
6216 7090 4.762765 ACTACGATTTTGCATGGGTTGTAA 59.237 37.500 0.00 0.00 0.00 2.41
6234 7114 1.396996 GCCATGTAGGTTGCAACTACG 59.603 52.381 27.64 15.23 42.84 3.51
6243 7123 8.220559 AGAATAATCAATGTAGCCATGTAGGTT 58.779 33.333 0.00 0.00 40.61 3.50
6329 7231 7.600960 TGTACTTTTGATGCAAGCATTAATGA 58.399 30.769 19.73 0.00 36.70 2.57
6407 7309 8.846211 TGTGAGGAAAGAATAAAACAAGGTAAG 58.154 33.333 0.00 0.00 0.00 2.34
6416 7318 8.287439 TGTTCTGTTGTGAGGAAAGAATAAAA 57.713 30.769 0.00 0.00 0.00 1.52
6420 7322 6.564328 GTTTGTTCTGTTGTGAGGAAAGAAT 58.436 36.000 0.00 0.00 0.00 2.40
6445 7347 9.495754 GAAGCAAAATTGTATCACTCATAGTTC 57.504 33.333 0.00 0.00 0.00 3.01
6485 7387 7.277174 AGTTCGTTTGATTTTCAGGAAGAAT 57.723 32.000 0.00 0.00 35.83 2.40
6531 7433 6.842437 AGAAGCTCAGTTCAACATAGTAGA 57.158 37.500 0.00 0.00 0.00 2.59
6532 7434 9.243637 GATAAGAAGCTCAGTTCAACATAGTAG 57.756 37.037 0.00 0.00 0.00 2.57
6542 7444 7.150783 ACCAAAATGATAAGAAGCTCAGTTC 57.849 36.000 0.00 0.00 29.23 3.01
6643 7545 2.037251 TGCAGAAGTGAGAGGGTACAAC 59.963 50.000 0.00 0.00 0.00 3.32
6651 7553 2.035704 ACAGTGTCTGCAGAAGTGAGAG 59.964 50.000 26.63 14.83 34.37 3.20
6711 7613 4.292186 TCCAGATCAACTCCTTTTCCAG 57.708 45.455 0.00 0.00 0.00 3.86
6740 7642 2.107378 TGCTGAAAACCCAGGTATGTGA 59.893 45.455 0.00 0.00 34.82 3.58
6746 7648 2.820845 GGTTGCTGAAAACCCAGGT 58.179 52.632 2.24 0.00 43.31 4.00
6761 7663 2.102578 GCAATTACAGATGGCAGGGTT 58.897 47.619 0.00 0.00 0.00 4.11
6838 7740 5.256474 AGATACCAACCTCCATTTGTGAAG 58.744 41.667 0.00 0.00 0.00 3.02
6881 7783 4.757149 ACACAAACAATAAGTCTGGAGAGC 59.243 41.667 0.00 0.00 0.00 4.09
6882 7784 6.226787 AGACACAAACAATAAGTCTGGAGAG 58.773 40.000 0.00 0.00 38.08 3.20
6883 7785 6.174720 AGACACAAACAATAAGTCTGGAGA 57.825 37.500 0.00 0.00 38.08 3.71
6884 7786 5.409826 GGAGACACAAACAATAAGTCTGGAG 59.590 44.000 0.00 0.00 39.47 3.86
6885 7787 5.163248 TGGAGACACAAACAATAAGTCTGGA 60.163 40.000 0.00 0.00 39.47 3.86
6886 7788 5.063204 TGGAGACACAAACAATAAGTCTGG 58.937 41.667 0.00 0.00 39.47 3.86
6903 7805 5.803967 AGTACGAACGTTGATTAATGGAGAC 59.196 40.000 5.00 0.00 0.00 3.36
6904 7806 5.957798 AGTACGAACGTTGATTAATGGAGA 58.042 37.500 5.00 0.00 0.00 3.71
6905 7807 6.642683 AAGTACGAACGTTGATTAATGGAG 57.357 37.500 5.00 0.00 0.00 3.86
6906 7808 8.531622 TTAAAGTACGAACGTTGATTAATGGA 57.468 30.769 5.00 0.00 0.00 3.41
6907 7809 9.417284 GATTAAAGTACGAACGTTGATTAATGG 57.583 33.333 5.00 0.00 0.00 3.16
6911 7813 9.409312 TGAAGATTAAAGTACGAACGTTGATTA 57.591 29.630 5.00 0.00 0.00 1.75
6912 7814 8.301730 TGAAGATTAAAGTACGAACGTTGATT 57.698 30.769 5.00 0.00 0.00 2.57
6913 7815 7.597743 ACTGAAGATTAAAGTACGAACGTTGAT 59.402 33.333 5.00 0.00 0.00 2.57
6914 7816 6.919662 ACTGAAGATTAAAGTACGAACGTTGA 59.080 34.615 5.00 0.00 0.00 3.18
6915 7817 7.101993 ACTGAAGATTAAAGTACGAACGTTG 57.898 36.000 5.00 0.24 0.00 4.10
6916 7818 7.704789 AACTGAAGATTAAAGTACGAACGTT 57.295 32.000 0.00 0.00 0.00 3.99
6917 7819 7.704789 AAACTGAAGATTAAAGTACGAACGT 57.295 32.000 5.03 5.03 0.00 3.99
6918 7820 8.982925 AAAAACTGAAGATTAAAGTACGAACG 57.017 30.769 0.00 0.00 0.00 3.95
6948 7850 5.182001 AGTTACAGAACATCAATGAACAGGC 59.818 40.000 0.00 0.00 38.10 4.85
6978 7880 7.390718 AGAAATTCCACTGTTTATCCTGTACAC 59.609 37.037 0.00 0.00 0.00 2.90
7033 7935 1.027357 AGTTCACAAGCACAAGCCAG 58.973 50.000 0.00 0.00 43.56 4.85
7323 8243 1.609208 AAAAGTCGCAGCCATCACTT 58.391 45.000 0.00 0.00 0.00 3.16
7324 8244 1.267806 CAAAAAGTCGCAGCCATCACT 59.732 47.619 0.00 0.00 0.00 3.41
7429 8349 6.991485 ATGAAATCGTGCTAAACAAACAAG 57.009 33.333 0.00 0.00 0.00 3.16
7630 8551 2.362077 AGCGGCTTTATTATTTGCCAGG 59.638 45.455 0.00 0.00 45.13 4.45
7648 8569 1.959042 AGGCAATCTTGGTATCAGCG 58.041 50.000 0.00 0.00 0.00 5.18
7683 8604 3.877450 GATGCAGATCCCCGCCCA 61.877 66.667 0.00 0.00 0.00 5.36
7685 8606 2.592861 GTGATGCAGATCCCCGCC 60.593 66.667 0.00 0.00 0.00 6.13
7686 8607 2.969238 CGTGATGCAGATCCCCGC 60.969 66.667 0.00 0.00 0.00 6.13
7687 8608 1.592669 GACGTGATGCAGATCCCCG 60.593 63.158 0.00 0.00 0.00 5.73
7705 8626 2.469886 TGACACAGTTTTCGAATCGACG 59.530 45.455 4.25 0.00 34.89 5.12
7730 8662 4.628074 TGAGCTAGTCACAAGGTAACAAC 58.372 43.478 0.00 0.00 41.41 3.32
7802 8738 1.956477 ACCACAAAGCTACAAGCCAAG 59.044 47.619 0.00 0.00 43.77 3.61
7815 8751 4.278669 TCCGCTTTGCTTAATAACCACAAA 59.721 37.500 0.00 0.00 0.00 2.83
7904 8840 2.834549 AGAGGTTGCAGTACAGTAGCAT 59.165 45.455 0.00 0.00 38.19 3.79
7907 8843 5.634020 GTGTAAAGAGGTTGCAGTACAGTAG 59.366 44.000 0.00 0.00 31.90 2.57
7920 8856 1.420532 TTGGGCGGGTGTAAAGAGGT 61.421 55.000 0.00 0.00 0.00 3.85
7946 8882 1.399440 CGACCATCTCTGTTGCATTGG 59.601 52.381 0.00 0.00 0.00 3.16
7960 8896 1.302511 GACAACTGCCCACGACCAT 60.303 57.895 0.00 0.00 0.00 3.55
8060 8996 0.384477 GCGTGCTCGAGTATCTACGG 60.384 60.000 15.13 4.50 39.71 4.02
8092 9030 0.108804 AGGCAATGTACACGAGGACG 60.109 55.000 0.00 0.00 45.75 4.79
8121 9063 1.018148 CTCGTGGCAGTAGAGATCGT 58.982 55.000 8.38 0.00 34.13 3.73
8135 9077 0.591994 CGCTGCTCTCTCATCTCGTG 60.592 60.000 0.00 0.00 0.00 4.35
8142 9084 3.696548 TCTTAGAAATCGCTGCTCTCTCA 59.303 43.478 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.