AutoCloner

Multiple sequence alignment - TraesCS3A01G317900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G317900	chr3A	100.000	2848	0	0	1	2848	559063728	559066575	0.000000e+00	5260
1	TraesCS3A01G317900	chr3A	91.631	1386	98	8	664	2046	559264095	559265465	0.000000e+00	1901
2	TraesCS3A01G317900	chr3A	91.631	1386	98	8	664	2046	559333784	559335154	0.000000e+00	1901
3	TraesCS3A01G317900	chr3A	85.599	1236	143	20	1515	2743	559335868	559337075	0.000000e+00	1264
4	TraesCS3A01G317900	chr3A	85.518	1236	144	20	1515	2743	559266179	559267386	0.000000e+00	1258
5	TraesCS3A01G317900	chr3A	83.383	337	36	11	55	380	559333121	559333448	7.720000e-76	294
6	TraesCS3A01G317900	chr3D	94.037	1979	99	10	87	2053	427295948	427293977	0.000000e+00	2983
7	TraesCS3A01G317900	chr3D	88.458	2088	205	16	670	2743	427234078	427232013	0.000000e+00	2488
8	TraesCS3A01G317900	chr3D	91.090	1762	127	7	985	2743	427280532	427278798	0.000000e+00	2357
9	TraesCS3A01G317900	chr3D	92.392	1643	101	5	666	2305	427285659	427284038	0.000000e+00	2320
10	TraesCS3A01G317900	chr3D	93.541	1285	79	2	949	2233	427289369	427288089	0.000000e+00	1910
11	TraesCS3A01G317900	chr3D	93.750	288	18	0	665	952	427280815	427280528	1.570000e-117	433
12	TraesCS3A01G317900	chr3D	98.864	88	1	0	1	88	427300479	427300392	1.060000e-34	158
13	TraesCS3A01G317900	chr3B	91.398	2081	133	24	1	2053	556961291	556959229	0.000000e+00	2809
14	TraesCS3A01G317900	chr3B	89.232	1848	157	20	670	2510	556945496	556943684	0.000000e+00	2272
15	TraesCS3A01G317900	chr3B	85.676	1501	172	26	1254	2743	556933740	556932272	0.000000e+00	1541
16	TraesCS3A01G317900	chr3B	92.320	612	37	7	666	1274	556939715	556939111	0.000000e+00	861
17	TraesCS3A01G317900	chr3B	82.460	496	68	14	41	524	556940324	556939836	1.580000e-112	416
18	TraesCS3A01G317900	chr4A	91.589	107	9	0	2742	2848	735048168	735048274	6.360000e-32	148
19	TraesCS3A01G317900	chr6B	90.826	109	10	0	2740	2848	515199934	515199826	2.290000e-31	147
20	TraesCS3A01G317900	chr5D	90.654	107	10	0	2742	2848	247504627	247504521	2.960000e-30	143
21	TraesCS3A01G317900	chr7A	89.908	109	10	1	2740	2848	507145225	507145332	3.830000e-29	139
22	TraesCS3A01G317900	chr5B	88.991	109	11	1	2740	2848	596710294	596710401	1.780000e-27	134
23	TraesCS3A01G317900	chr6A	89.796	98	10	0	2743	2840	567939374	567939277	2.980000e-25	126
24	TraesCS3A01G317900	chr4D	92.771	83	6	0	2766	2848	30749867	30749785	1.390000e-23	121
25	TraesCS3A01G317900	chr1D	87.619	105	12	1	2736	2840	63605424	63605527	1.390000e-23	121
26	TraesCS3A01G317900	chr2B	86.869	99	13	0	2742	2840	383066984	383066886	8.340000e-21	111

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G317900	chr3A	559063728	559066575	2847	False	5260.0	5260	100.00000	1	2848	1	chr3A.!!$F1	2847
1	TraesCS3A01G317900	chr3A	559264095	559267386	3291	False	1579.5	1901	88.57450	664	2743	2	chr3A.!!$F2	2079
2	TraesCS3A01G317900	chr3A	559333121	559337075	3954	False	1153.0	1901	86.87100	55	2743	3	chr3A.!!$F3	2688
3	TraesCS3A01G317900	chr3D	427293977	427295948	1971	True	2983.0	2983	94.03700	87	2053	1	chr3D.!!$R2	1966
4	TraesCS3A01G317900	chr3D	427232013	427234078	2065	True	2488.0	2488	88.45800	670	2743	1	chr3D.!!$R1	2073
5	TraesCS3A01G317900	chr3D	427278798	427289369	10571	True	1755.0	2357	92.69325	665	2743	4	chr3D.!!$R4	2078
6	TraesCS3A01G317900	chr3B	556959229	556961291	2062	True	2809.0	2809	91.39800	1	2053	1	chr3B.!!$R2	2052
7	TraesCS3A01G317900	chr3B	556932272	556933740	1468	True	1541.0	1541	85.67600	1254	2743	1	chr3B.!!$R1	1489
8	TraesCS3A01G317900	chr3B	556939111	556945496	6385	True	1183.0	2272	88.00400	41	2510	3	chr3B.!!$R3	2469

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
689	3734	1.268352	TGCTATGGAAAAACGGCACAC	59.732	47.619	0.0	0.0	0.0	3.82	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2352	11475	0.178981	ACACTTGGCCACAGAGCATT	60.179	50.0	3.88	0.0	0.0	3.56	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
82	83	1.915614	GCGAACTGTCACATGCCTGG	61.916	60.000	0.00	0.00	0.00	4.45
201	209	1.490490	GGGGCTGACTATGGATTGTCA	59.510	52.381	4.26	4.26	39.54	3.58
689	3734	1.268352	TGCTATGGAAAAACGGCACAC	59.732	47.619	0.00	0.00	0.00	3.82
728	3773	1.472082	TCCGCGTATCCGTGTCTTAAA	59.528	47.619	4.92	0.00	42.93	1.52
974	4026	2.098117	GGCTGCCTTGCTACATTACTTG	59.902	50.000	12.43	0.00	0.00	3.16
975	4027	2.749621	GCTGCCTTGCTACATTACTTGT	59.250	45.455	0.00	0.00	42.62	3.16
976	4028	3.191371	GCTGCCTTGCTACATTACTTGTT	59.809	43.478	0.00	0.00	39.87	2.83
1011	4063	5.256474	TCTGAAATTGAAATGGAGAGTCCC	58.744	41.667	0.00	0.00	35.03	4.46
1028	4080	2.765699	GTCCCTCTCTGCTTCTTCTCAT	59.234	50.000	0.00	0.00	0.00	2.90
1157	4209	0.525668	GCAGCTGAGTTGCATGCATC	60.526	55.000	23.37	20.93	39.50	3.91
1175	4227	3.577667	CATCATTTGGTTGTCGCACATT	58.422	40.909	0.00	0.00	0.00	2.71
1673	4728	2.044793	TCAAGGGGTCCAAGACTGAT	57.955	50.000	0.00	0.00	32.47	2.90
1730	4785	2.686915	GCAGAGCAATGCTTACCTCAAT	59.313	45.455	9.91	0.00	43.07	2.57
1772	4827	3.822192	CAGACCGACGATGGCCGA	61.822	66.667	0.00	0.00	41.76	5.54
1819	4874	0.533308	TACAACTGGTGGTTCGGTGC	60.533	55.000	0.00	0.00	35.74	5.01
1832	4887	1.116536	TCGGTGCCACCTACACTTCA	61.117	55.000	12.94	0.00	38.14	3.02
1856	4911	4.133078	GGCAGCAGTTCTAATATCTTGCT	58.867	43.478	0.00	0.00	0.00	3.91
1863	4918	6.203723	GCAGTTCTAATATCTTGCTAGGTTGG	59.796	42.308	0.00	0.00	0.00	3.77
1929	9795	2.666272	TCATCCGAGGCTGTATCTCT	57.334	50.000	0.00	0.00	0.00	3.10
1984	9850	8.685838	TTATCCAAGTTTGTGTACTTAGCTTT	57.314	30.769	0.00	0.00	36.24	3.51
2143	11255	3.323403	TCGCTTTTGGGTTGAAATCCAAT	59.677	39.130	8.56	0.00	41.96	3.16
2147	11266	5.049474	GCTTTTGGGTTGAAATCCAATGAAC	60.049	40.000	8.56	0.00	41.96	3.18
2167	11286	1.419381	GGGACATCTTCCTCCTCCTC	58.581	60.000	0.00	0.00	45.09	3.71
2177	11296	1.007721	TCCTCCTCCTCCTTCTTCCTG	59.992	57.143	0.00	0.00	0.00	3.86
2192	11311	2.672961	TCCTGCTCTAACCAATGACG	57.327	50.000	0.00	0.00	0.00	4.35
2339	11461	4.412858	TCCCTAAACTACTCACCAAAACCA	59.587	41.667	0.00	0.00	0.00	3.67
2349	11472	2.111613	TCACCAAAACCATCAAGGGGAT	59.888	45.455	0.00	0.00	43.89	3.85
2352	11475	2.559478	CCAAAACCATCAAGGGGATCCA	60.559	50.000	15.23	0.00	43.89	3.41
2359	11482	1.600058	TCAAGGGGATCCAATGCTCT	58.400	50.000	15.23	0.00	30.00	4.09
2375	11498	1.813862	GCTCTGTGGCCAAGTGTTGTA	60.814	52.381	7.24	0.00	0.00	2.41
2456	11580	4.510038	AATCATGTGGTTGCTTTCTGAC	57.490	40.909	0.00	0.00	0.00	3.51
2499	11623	5.642063	TGCTTGCTATTCTAACAAGTGGTAC	59.358	40.000	0.00	0.00	42.20	3.34
2587	12132	3.999001	ACACTTACATGCACATGACTCAG	59.001	43.478	17.19	8.93	41.20	3.35
2685	14682	8.523658	AGCTTCATATTCCAACCTTTTCTAAAC	58.476	33.333	0.00	0.00	0.00	2.01
2743	15854	6.442541	TTTTAGAAGGGACACCATGTAAGA	57.557	37.500	0.00	0.00	40.13	2.10
2744	15855	5.677319	TTAGAAGGGACACCATGTAAGAG	57.323	43.478	0.00	0.00	40.13	2.85
2745	15856	2.237392	AGAAGGGACACCATGTAAGAGC	59.763	50.000	0.00	0.00	40.13	4.09
2746	15857	1.656587	AGGGACACCATGTAAGAGCA	58.343	50.000	0.00	0.00	40.13	4.26
2747	15858	2.200081	AGGGACACCATGTAAGAGCAT	58.800	47.619	0.00	0.00	40.13	3.79
2748	15859	2.171448	AGGGACACCATGTAAGAGCATC	59.829	50.000	0.00	0.00	40.13	3.91
2749	15860	2.171448	GGGACACCATGTAAGAGCATCT	59.829	50.000	0.00	0.00	42.56	2.90
2750	15861	3.742640	GGGACACCATGTAAGAGCATCTC	60.743	52.174	0.00	0.00	40.47	2.75
2751	15862	6.783963	GGGACACCATGTAAGAGCATCTCC	62.784	54.167	0.00	0.00	40.47	3.71
2760	15871	1.880340	GAGCATCTCCAGCCGTTCG	60.880	63.158	0.00	0.00	0.00	3.95
2761	15872	2.892425	GCATCTCCAGCCGTTCGG	60.892	66.667	6.90	6.90	0.00	4.30
2762	15873	2.579201	CATCTCCAGCCGTTCGGT	59.421	61.111	12.81	0.00	0.00	4.69
2763	15874	1.811266	CATCTCCAGCCGTTCGGTG	60.811	63.158	12.81	9.33	39.81	4.94
2764	15875	3.665675	ATCTCCAGCCGTTCGGTGC	62.666	63.158	12.81	0.00	38.73	5.01
2776	15887	4.722700	CGGTGCCCCCAAGGACTG	62.723	72.222	0.00	0.00	38.24	3.51
2777	15888	3.256960	GGTGCCCCCAAGGACTGA	61.257	66.667	0.00	0.00	38.24	3.41
2778	15889	2.840753	GGTGCCCCCAAGGACTGAA	61.841	63.158	0.00	0.00	38.24	3.02
2779	15890	1.152830	GTGCCCCCAAGGACTGAAA	59.847	57.895	0.00	0.00	38.24	2.69
2780	15891	0.251787	GTGCCCCCAAGGACTGAAAT	60.252	55.000	0.00	0.00	38.24	2.17
2781	15892	1.005450	GTGCCCCCAAGGACTGAAATA	59.995	52.381	0.00	0.00	38.24	1.40
2782	15893	1.929494	TGCCCCCAAGGACTGAAATAT	59.071	47.619	0.00	0.00	38.24	1.28
2784	15895	2.851195	CCCCCAAGGACTGAAATATCG	58.149	52.381	0.00	0.00	38.24	2.92
2785	15896	2.222027	CCCCAAGGACTGAAATATCGC	58.778	52.381	0.00	0.00	33.47	4.58
2786	15897	2.222027	CCCAAGGACTGAAATATCGCC	58.778	52.381	0.00	0.00	0.00	5.54
2787	15898	2.158755	CCCAAGGACTGAAATATCGCCT	60.159	50.000	0.00	0.00	0.00	5.52
2788	15899	3.134458	CCAAGGACTGAAATATCGCCTC	58.866	50.000	0.00	0.00	0.00	4.70
2789	15900	3.134458	CAAGGACTGAAATATCGCCTCC	58.866	50.000	0.00	0.00	0.00	4.30
2790	15901	2.683768	AGGACTGAAATATCGCCTCCT	58.316	47.619	0.00	0.00	0.00	3.69
2791	15902	2.366916	AGGACTGAAATATCGCCTCCTG	59.633	50.000	0.00	0.00	28.97	3.86
2792	15903	2.548920	GGACTGAAATATCGCCTCCTGG	60.549	54.545	0.00	0.00	0.00	4.45
2793	15904	1.417890	ACTGAAATATCGCCTCCTGGG	59.582	52.381	0.00	0.00	38.36	4.45
2794	15905	0.764890	TGAAATATCGCCTCCTGGGG	59.235	55.000	0.00	0.00	46.42	4.96
2796	15907	2.069165	AAATATCGCCTCCTGGGGGC	62.069	60.000	28.37	28.37	46.27	5.80
2799	15910	2.731801	TATCGCCTCCTGGGGGCTAG	62.732	65.000	33.64	20.23	46.73	3.42
2810	15921	4.315941	GGGCTAGCCGGCGCTATT	62.316	66.667	27.24	5.39	46.46	1.73
2812	15923	1.892391	GGCTAGCCGGCGCTATTTT	60.892	57.895	23.20	3.61	46.46	1.82
2813	15924	1.569984	GCTAGCCGGCGCTATTTTC	59.430	57.895	23.20	1.67	46.46	2.29
2815	15926	0.582005	CTAGCCGGCGCTATTTTCAC	59.418	55.000	23.20	0.00	46.46	3.18
2816	15927	0.812412	TAGCCGGCGCTATTTTCACC	60.812	55.000	23.20	0.00	46.08	4.02
2817	15928	2.707039	CCGGCGCTATTTTCACCG	59.293	61.111	7.64	0.00	43.44	4.94
2818	15929	2.104253	CCGGCGCTATTTTCACCGT	61.104	57.895	7.64	0.00	42.29	4.83
2819	15930	1.060308	CGGCGCTATTTTCACCGTG	59.940	57.895	7.64	0.00	39.05	4.94
2820	15931	1.427819	GGCGCTATTTTCACCGTGG	59.572	57.895	7.64	0.00	0.00	4.94
2821	15932	1.427819	GCGCTATTTTCACCGTGGG	59.572	57.895	0.00	0.00	0.00	4.61
2822	15933	1.427819	CGCTATTTTCACCGTGGGC	59.572	57.895	0.00	0.00	0.00	5.36
2824	15935	1.427819	CTATTTTCACCGTGGGCGC	59.572	57.895	0.00	0.00	36.67	6.53
2825	15936	2.304516	CTATTTTCACCGTGGGCGCG	62.305	60.000	0.00	0.00	36.67	6.86
2841	15952	2.358247	CGGTCGGGTTCCCAACTG	60.358	66.667	8.70	0.83	0.00	3.16
2843	15954	2.671963	GTCGGGTTCCCAACTGCC	60.672	66.667	8.70	0.00	0.00	4.85
2844	15955	4.323477	TCGGGTTCCCAACTGCCG	62.323	66.667	8.70	0.00	37.50	5.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
3	4	7.830697	TCTCCCAATATGGCAATATCACTATTG	59.169	37.037	0.00	0.00	44.71	1.90
26	27	4.083003	TGAAAAATAACGCACATGGGTCTC	60.083	41.667	0.00	0.00	40.50	3.36
82	83	5.048991	ACATTTTAGTCCACCGATCAACAAC	60.049	40.000	0.00	0.00	0.00	3.32
201	209	7.277098	GGTGTACACATATCAACTAATCGTGTT	59.723	37.037	26.51	0.00	37.34	3.32
353	370	9.429359	AGTTCTTACACTAGAATGAATGTTCAG	57.571	33.333	0.00	0.00	41.08	3.02
689	3734	4.084013	GCGGATTAAACAGAATCATACCCG	60.084	45.833	0.00	0.00	37.53	5.28
728	3773	3.335579	GTTGGCTCTTGACGGTTAAGAT	58.664	45.455	14.71	0.00	33.99	2.40
867	3914	0.870393	CATCAGAGCTTGCGTGTTGT	59.130	50.000	0.00	0.00	0.00	3.32
974	4026	6.327934	TCAATTTCAGAGTACGCCTACTAAC	58.672	40.000	0.00	0.00	32.96	2.34
975	4027	6.519679	TCAATTTCAGAGTACGCCTACTAA	57.480	37.500	0.00	0.00	32.96	2.24
976	4028	6.519679	TTCAATTTCAGAGTACGCCTACTA	57.480	37.500	0.00	0.00	32.96	1.82
1011	4063	3.448301	AGGTGATGAGAAGAAGCAGAGAG	59.552	47.826	0.00	0.00	0.00	3.20
1028	4080	0.685785	TGCAAAGGCCAACAAGGTGA	60.686	50.000	5.01	0.00	40.61	4.02
1157	4209	2.981805	CAGAATGTGCGACAACCAAATG	59.018	45.455	0.00	0.00	0.00	2.32
1175	4227	5.421056	TCCGCTTAGTAAAAGAAGATCCAGA	59.579	40.000	0.00	0.00	0.00	3.86
1292	4346	2.594962	CGCGCCGTTGTTGAAGAGT	61.595	57.895	0.00	0.00	0.00	3.24
1376	4430	1.149174	GGCCGTGATGGTGATGGAT	59.851	57.895	0.00	0.00	41.21	3.41
1526	4580	1.278413	GGAACCCTCCTGTAGTTGACC	59.722	57.143	0.00	0.00	38.88	4.02
1673	4728	3.266772	AGTTCCTGCTCATTACCATCCAA	59.733	43.478	0.00	0.00	0.00	3.53
1748	4803	2.019249	CCATCGTCGGTCTGTACCTTA	58.981	52.381	0.00	0.00	44.35	2.69
1766	4821	4.451150	GCCATGACGACTCGGCCA	62.451	66.667	2.24	0.00	38.67	5.36
1819	4874	1.742761	CTGCCATGAAGTGTAGGTGG	58.257	55.000	0.00	0.00	0.00	4.61
1832	4887	4.518211	GCAAGATATTAGAACTGCTGCCAT	59.482	41.667	0.00	0.00	0.00	4.40
1856	4911	4.954202	CAGATGAGTACCTACACCAACCTA	59.046	45.833	0.00	0.00	0.00	3.08
1863	4918	3.097614	ACCCACAGATGAGTACCTACAC	58.902	50.000	0.00	0.00	0.00	2.90
2015	11127	6.600388	AGATGTTGGGCACACACATATAATA	58.400	36.000	14.20	0.00	38.61	0.98
2167	11286	3.703001	TTGGTTAGAGCAGGAAGAAGG	57.297	47.619	0.00	0.00	0.00	3.46
2177	11296	1.726853	AGTGCGTCATTGGTTAGAGC	58.273	50.000	0.00	0.00	0.00	4.09
2192	11311	2.031683	GGTTGGCGATACATACAAGTGC	59.968	50.000	0.00	0.00	0.00	4.40
2243	11362	1.141019	GGTGAGAACGATAGCGCCA	59.859	57.895	2.29	0.00	42.48	5.69
2339	11461	2.141911	AGAGCATTGGATCCCCTTGAT	58.858	47.619	9.90	2.47	36.01	2.57
2349	11472	0.609957	CTTGGCCACAGAGCATTGGA	60.610	55.000	3.88	0.00	34.46	3.53
2352	11475	0.178981	ACACTTGGCCACAGAGCATT	60.179	50.000	3.88	0.00	0.00	3.56
2359	11482	1.674359	CACTACAACACTTGGCCACA	58.326	50.000	3.88	0.00	34.12	4.17
2375	11498	3.780294	TCCTAATCCACATTGCTACCACT	59.220	43.478	0.00	0.00	0.00	4.00
2456	11580	3.118482	AGCACACTGTGATCTATTGAGGG	60.118	47.826	15.86	0.00	35.23	4.30
2499	11623	2.093711	TCAATCACACACCCGACTATGG	60.094	50.000	0.00	0.00	0.00	2.74
2571	11932	2.195741	AAGCTGAGTCATGTGCATGT	57.804	45.000	11.38	0.00	39.72	3.21
2587	12132	7.222031	ACGAAACTTGAAATAGGAAAACAAAGC	59.778	33.333	0.00	0.00	0.00	3.51
2670	13412	5.069781	TGGAACATGGTTTAGAAAAGGTTGG	59.930	40.000	0.00	0.00	0.00	3.77
2743	15854	2.185350	CGAACGGCTGGAGATGCT	59.815	61.111	0.00	0.00	0.00	3.79
2744	15855	2.892425	CCGAACGGCTGGAGATGC	60.892	66.667	0.00	0.00	0.00	3.91
2745	15856	1.811266	CACCGAACGGCTGGAGATG	60.811	63.158	13.32	0.00	39.32	2.90
2746	15857	2.579201	CACCGAACGGCTGGAGAT	59.421	61.111	13.32	0.00	39.32	2.75
2747	15858	4.373116	GCACCGAACGGCTGGAGA	62.373	66.667	13.32	0.00	39.32	3.71
2761	15872	0.251787	ATTTCAGTCCTTGGGGGCAC	60.252	55.000	0.00	0.00	40.27	5.01
2762	15873	1.377690	TATTTCAGTCCTTGGGGGCA	58.622	50.000	0.00	0.00	40.27	5.36
2763	15874	2.587522	GATATTTCAGTCCTTGGGGGC	58.412	52.381	0.00	0.00	37.52	5.80
2764	15875	2.851195	CGATATTTCAGTCCTTGGGGG	58.149	52.381	0.00	0.00	0.00	5.40
2767	15878	3.134458	GAGGCGATATTTCAGTCCTTGG	58.866	50.000	0.00	0.00	0.00	3.61
2768	15879	3.134458	GGAGGCGATATTTCAGTCCTTG	58.866	50.000	0.00	0.00	0.00	3.61
2769	15880	3.041946	AGGAGGCGATATTTCAGTCCTT	58.958	45.455	0.00	0.00	28.07	3.36
2776	15887	0.036875	CCCCCAGGAGGCGATATTTC	59.963	60.000	0.00	0.00	33.47	2.17
2777	15888	2.069165	GCCCCCAGGAGGCGATATTT	62.069	60.000	0.00	0.00	41.41	1.40
2778	15889	2.529744	GCCCCCAGGAGGCGATATT	61.530	63.158	0.00	0.00	41.41	1.28
2779	15890	2.930562	GCCCCCAGGAGGCGATAT	60.931	66.667	0.00	0.00	41.41	1.63
2799	15910	2.407616	GGTGAAAATAGCGCCGGC	59.592	61.111	19.07	19.07	40.37	6.13
2806	15917	1.427819	GCGCCCACGGTGAAAATAG	59.572	57.895	10.28	0.00	40.57	1.73
2807	15918	2.392181	CGCGCCCACGGTGAAAATA	61.392	57.895	10.28	0.00	40.57	1.40
2808	15919	3.732892	CGCGCCCACGGTGAAAAT	61.733	61.111	10.28	0.00	40.57	1.82

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.