Multiple sequence alignment - TraesCS3A01G317200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G317200 chr3A 100.000 3314 0 0 1 3314 557917121 557913808 0.000000e+00 6120
1 TraesCS3A01G317200 chr3A 96.599 588 19 1 1 587 585043062 585043649 0.000000e+00 974
2 TraesCS3A01G317200 chr3A 84.452 849 97 20 1682 2519 194958061 194958885 0.000000e+00 804
3 TraesCS3A01G317200 chr4D 94.125 2417 130 12 587 2997 8437557 8435147 0.000000e+00 3666
4 TraesCS3A01G317200 chr4D 92.925 2417 130 17 588 2997 103551641 103554023 0.000000e+00 3478
5 TraesCS3A01G317200 chr4D 96.190 315 12 0 3000 3314 170894457 170894771 1.760000e-142 516
6 TraesCS3A01G317200 chr3B 92.276 2421 154 21 587 2997 559345657 559348054 0.000000e+00 3404
7 TraesCS3A01G317200 chr3B 87.234 94 9 3 589 680 519423296 519423388 1.630000e-18 104
8 TraesCS3A01G317200 chr1A 91.811 2418 172 15 585 2997 93052771 93050375 0.000000e+00 3345
9 TraesCS3A01G317200 chr6A 89.789 2370 174 31 648 2997 304292046 304294367 0.000000e+00 2974
10 TraesCS3A01G317200 chr6A 92.302 1429 100 8 1571 2997 364206972 364208392 0.000000e+00 2021
11 TraesCS3A01G317200 chr6A 96.429 588 20 1 1 587 458249060 458248473 0.000000e+00 968
12 TraesCS3A01G317200 chr7D 92.352 1752 111 12 589 2326 629772924 629771182 0.000000e+00 2471
13 TraesCS3A01G317200 chr7D 94.114 1495 75 9 1500 2990 217694658 217696143 0.000000e+00 2261
14 TraesCS3A01G317200 chr3D 93.984 1496 80 7 1505 2997 59190667 59192155 0.000000e+00 2255
15 TraesCS3A01G317200 chr3D 93.389 1437 85 9 587 2015 427821635 427823069 0.000000e+00 2119
16 TraesCS3A01G317200 chr3D 93.963 646 35 3 2354 2997 427841911 427842554 0.000000e+00 974
17 TraesCS3A01G317200 chr3D 96.215 317 12 0 2998 3314 428273851 428273535 1.360000e-143 520
18 TraesCS3A01G317200 chr3D 96.215 317 12 0 2998 3314 516534443 516534127 1.360000e-143 520
19 TraesCS3A01G317200 chr4B 87.493 1743 180 19 585 2300 529151921 529150190 0.000000e+00 1977
20 TraesCS3A01G317200 chr7A 87.638 1715 182 19 587 2289 235151350 235153046 0.000000e+00 1965
21 TraesCS3A01G317200 chr7A 96.259 588 21 1 1 587 181814613 181814026 0.000000e+00 963
22 TraesCS3A01G317200 chr7A 96.259 588 21 1 1 587 488043406 488043993 0.000000e+00 963
23 TraesCS3A01G317200 chr7B 92.479 1210 72 10 1799 2997 564603259 564604460 0.000000e+00 1712
24 TraesCS3A01G317200 chr5A 90.120 1164 73 17 648 1776 584578324 584577168 0.000000e+00 1474
25 TraesCS3A01G317200 chr5A 96.587 586 19 1 1 586 91019046 91019630 0.000000e+00 970
26 TraesCS3A01G317200 chr5A 96.259 588 21 1 1 587 330719418 330718831 0.000000e+00 963
27 TraesCS3A01G317200 chr5A 86.567 871 82 20 1672 2519 225376103 225375245 0.000000e+00 928
28 TraesCS3A01G317200 chr5A 95.092 326 16 0 2989 3314 157486878 157487203 6.340000e-142 514
29 TraesCS3A01G317200 chr2A 81.818 1595 176 62 755 2301 188812075 188810547 0.000000e+00 1234
30 TraesCS3A01G317200 chr2A 95.122 328 16 0 2987 3314 590828939 590829266 4.900000e-143 518
31 TraesCS3A01G317200 chr2A 94.529 329 16 2 2986 3314 614676230 614676556 1.060000e-139 507
32 TraesCS3A01G317200 chr4A 96.769 588 18 1 1 587 613432923 613432336 0.000000e+00 979
33 TraesCS3A01G317200 chr4A 96.429 588 19 2 1 587 495023439 495022853 0.000000e+00 968
34 TraesCS3A01G317200 chr4A 96.265 589 20 2 1 587 565441764 565442352 0.000000e+00 965
35 TraesCS3A01G317200 chr4A 96.215 317 12 0 2998 3314 181714143 181714459 1.360000e-143 520
36 TraesCS3A01G317200 chr5D 95.963 322 12 1 2994 3314 228149122 228148801 3.790000e-144 521
37 TraesCS3A01G317200 chr2D 96.215 317 12 0 2998 3314 337431450 337431134 1.360000e-143 520


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G317200 chr3A 557913808 557917121 3313 True 6120 6120 100.000 1 3314 1 chr3A.!!$R1 3313
1 TraesCS3A01G317200 chr3A 585043062 585043649 587 False 974 974 96.599 1 587 1 chr3A.!!$F2 586
2 TraesCS3A01G317200 chr3A 194958061 194958885 824 False 804 804 84.452 1682 2519 1 chr3A.!!$F1 837
3 TraesCS3A01G317200 chr4D 8435147 8437557 2410 True 3666 3666 94.125 587 2997 1 chr4D.!!$R1 2410
4 TraesCS3A01G317200 chr4D 103551641 103554023 2382 False 3478 3478 92.925 588 2997 1 chr4D.!!$F1 2409
5 TraesCS3A01G317200 chr3B 559345657 559348054 2397 False 3404 3404 92.276 587 2997 1 chr3B.!!$F2 2410
6 TraesCS3A01G317200 chr1A 93050375 93052771 2396 True 3345 3345 91.811 585 2997 1 chr1A.!!$R1 2412
7 TraesCS3A01G317200 chr6A 304292046 304294367 2321 False 2974 2974 89.789 648 2997 1 chr6A.!!$F1 2349
8 TraesCS3A01G317200 chr6A 364206972 364208392 1420 False 2021 2021 92.302 1571 2997 1 chr6A.!!$F2 1426
9 TraesCS3A01G317200 chr6A 458248473 458249060 587 True 968 968 96.429 1 587 1 chr6A.!!$R1 586
10 TraesCS3A01G317200 chr7D 629771182 629772924 1742 True 2471 2471 92.352 589 2326 1 chr7D.!!$R1 1737
11 TraesCS3A01G317200 chr7D 217694658 217696143 1485 False 2261 2261 94.114 1500 2990 1 chr7D.!!$F1 1490
12 TraesCS3A01G317200 chr3D 59190667 59192155 1488 False 2255 2255 93.984 1505 2997 1 chr3D.!!$F1 1492
13 TraesCS3A01G317200 chr3D 427821635 427823069 1434 False 2119 2119 93.389 587 2015 1 chr3D.!!$F2 1428
14 TraesCS3A01G317200 chr3D 427841911 427842554 643 False 974 974 93.963 2354 2997 1 chr3D.!!$F3 643
15 TraesCS3A01G317200 chr4B 529150190 529151921 1731 True 1977 1977 87.493 585 2300 1 chr4B.!!$R1 1715
16 TraesCS3A01G317200 chr7A 235151350 235153046 1696 False 1965 1965 87.638 587 2289 1 chr7A.!!$F1 1702
17 TraesCS3A01G317200 chr7A 181814026 181814613 587 True 963 963 96.259 1 587 1 chr7A.!!$R1 586
18 TraesCS3A01G317200 chr7A 488043406 488043993 587 False 963 963 96.259 1 587 1 chr7A.!!$F2 586
19 TraesCS3A01G317200 chr7B 564603259 564604460 1201 False 1712 1712 92.479 1799 2997 1 chr7B.!!$F1 1198
20 TraesCS3A01G317200 chr5A 584577168 584578324 1156 True 1474 1474 90.120 648 1776 1 chr5A.!!$R3 1128
21 TraesCS3A01G317200 chr5A 91019046 91019630 584 False 970 970 96.587 1 586 1 chr5A.!!$F1 585
22 TraesCS3A01G317200 chr5A 330718831 330719418 587 True 963 963 96.259 1 587 1 chr5A.!!$R2 586
23 TraesCS3A01G317200 chr5A 225375245 225376103 858 True 928 928 86.567 1672 2519 1 chr5A.!!$R1 847
24 TraesCS3A01G317200 chr2A 188810547 188812075 1528 True 1234 1234 81.818 755 2301 1 chr2A.!!$R1 1546
25 TraesCS3A01G317200 chr4A 613432336 613432923 587 True 979 979 96.769 1 587 1 chr4A.!!$R2 586
26 TraesCS3A01G317200 chr4A 495022853 495023439 586 True 968 968 96.429 1 587 1 chr4A.!!$R1 586
27 TraesCS3A01G317200 chr4A 565441764 565442352 588 False 965 965 96.265 1 587 1 chr4A.!!$F2 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 770 0.179105 ATTCGTATACGTGGGCGCAA 60.179 50.0 23.67 10.09 42.83 4.85 F
1864 2055 0.546747 AGGAGGACGATGGTTGGGAA 60.547 55.0 0.00 0.00 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2296 2526 1.342374 ACATCAATTGGGAAGGGGAGC 60.342 52.381 5.42 0.0 0.0 4.70 R
3133 3410 0.416231 AGGGGCTTACTAGGGACACA 59.584 55.000 0.00 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.527582 GCATCATCCGGTAACTAACTCATTT 59.472 40.000 0.00 0.00 0.00 2.32
130 133 3.567576 ATCTCGATCTATGCCAACTCG 57.432 47.619 0.00 0.00 0.00 4.18
212 215 5.526111 ACGTTTGATAGCACACTAAGTGTTT 59.474 36.000 2.17 0.00 45.08 2.83
295 298 7.716612 AGAAAGCAATAGCAACAAACTAAACT 58.283 30.769 0.00 0.00 45.49 2.66
310 313 7.817962 ACAAACTAAACTATCATCGTGCTAAGT 59.182 33.333 0.00 0.00 0.00 2.24
320 323 3.581024 TCGTGCTAAGTTAACGGATGT 57.419 42.857 7.16 0.00 37.87 3.06
368 371 7.990314 TCTAATGATGTGATCCCGTTAATCAAA 59.010 33.333 0.00 0.00 35.04 2.69
416 419 8.253113 AGGAAACATAACCATCATTGATTCAAC 58.747 33.333 0.15 0.00 0.00 3.18
417 420 7.220683 GGAAACATAACCATCATTGATTCAACG 59.779 37.037 0.15 0.00 0.00 4.10
418 421 7.389803 AACATAACCATCATTGATTCAACGA 57.610 32.000 0.15 0.00 0.00 3.85
419 422 7.019774 ACATAACCATCATTGATTCAACGAG 57.980 36.000 0.15 0.00 0.00 4.18
420 423 4.361451 AACCATCATTGATTCAACGAGC 57.639 40.909 0.15 0.00 0.00 5.03
421 424 3.614092 ACCATCATTGATTCAACGAGCT 58.386 40.909 0.15 0.00 0.00 4.09
422 425 4.769688 ACCATCATTGATTCAACGAGCTA 58.230 39.130 0.15 0.00 0.00 3.32
423 426 4.813161 ACCATCATTGATTCAACGAGCTAG 59.187 41.667 0.15 0.00 0.00 3.42
424 427 4.813161 CCATCATTGATTCAACGAGCTAGT 59.187 41.667 0.15 0.00 0.00 2.57
425 428 5.050499 CCATCATTGATTCAACGAGCTAGTC 60.050 44.000 0.00 0.00 0.00 2.59
426 429 5.072040 TCATTGATTCAACGAGCTAGTCA 57.928 39.130 0.00 0.00 0.00 3.41
427 430 5.478407 TCATTGATTCAACGAGCTAGTCAA 58.522 37.500 0.00 0.17 0.00 3.18
428 431 5.578336 TCATTGATTCAACGAGCTAGTCAAG 59.422 40.000 0.00 0.00 0.00 3.02
429 432 4.521130 TGATTCAACGAGCTAGTCAAGT 57.479 40.909 0.00 0.00 0.00 3.16
430 433 5.638596 TGATTCAACGAGCTAGTCAAGTA 57.361 39.130 0.00 0.00 0.00 2.24
431 434 5.641709 TGATTCAACGAGCTAGTCAAGTAG 58.358 41.667 0.00 0.00 0.00 2.57
432 435 5.414765 TGATTCAACGAGCTAGTCAAGTAGA 59.585 40.000 0.00 0.00 0.00 2.59
433 436 4.948608 TCAACGAGCTAGTCAAGTAGAG 57.051 45.455 0.00 0.00 0.00 2.43
434 437 3.690139 TCAACGAGCTAGTCAAGTAGAGG 59.310 47.826 0.00 0.00 0.00 3.69
435 438 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
436 439 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
437 440 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
438 441 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
439 442 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
440 443 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
441 444 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
442 445 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
443 446 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
444 447 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
445 448 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
446 449 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
447 450 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
448 451 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
449 452 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
450 453 5.127491 AGTAGAGGCATACTAGTGACACTC 58.873 45.833 12.39 8.31 34.21 3.51
451 454 4.243793 AGAGGCATACTAGTGACACTCT 57.756 45.455 12.39 10.40 0.00 3.24
452 455 3.951037 AGAGGCATACTAGTGACACTCTG 59.049 47.826 12.39 9.04 33.23 3.35
453 456 3.697045 GAGGCATACTAGTGACACTCTGT 59.303 47.826 12.39 14.35 0.00 3.41
454 457 4.090090 AGGCATACTAGTGACACTCTGTT 58.910 43.478 12.39 0.00 0.00 3.16
455 458 4.528596 AGGCATACTAGTGACACTCTGTTT 59.471 41.667 12.39 5.23 0.00 2.83
456 459 4.627467 GGCATACTAGTGACACTCTGTTTG 59.373 45.833 12.39 16.63 0.00 2.93
457 460 5.230942 GCATACTAGTGACACTCTGTTTGT 58.769 41.667 12.39 5.61 0.00 2.83
458 461 5.346281 GCATACTAGTGACACTCTGTTTGTC 59.654 44.000 12.39 9.81 43.22 3.18
459 462 6.682746 CATACTAGTGACACTCTGTTTGTCT 58.317 40.000 12.39 0.00 43.30 3.41
460 463 7.575155 GCATACTAGTGACACTCTGTTTGTCTA 60.575 40.741 12.39 0.00 43.30 2.59
461 464 6.902771 ACTAGTGACACTCTGTTTGTCTAT 57.097 37.500 12.39 0.00 43.30 1.98
462 465 6.682746 ACTAGTGACACTCTGTTTGTCTATG 58.317 40.000 12.39 0.00 43.30 2.23
463 466 5.537300 AGTGACACTCTGTTTGTCTATGT 57.463 39.130 1.07 0.00 43.30 2.29
464 467 6.650427 AGTGACACTCTGTTTGTCTATGTA 57.350 37.500 1.07 0.00 43.30 2.29
465 468 7.233389 AGTGACACTCTGTTTGTCTATGTAT 57.767 36.000 1.07 0.00 43.30 2.29
466 469 7.671302 AGTGACACTCTGTTTGTCTATGTATT 58.329 34.615 1.07 0.00 43.30 1.89
467 470 7.815068 AGTGACACTCTGTTTGTCTATGTATTC 59.185 37.037 1.07 0.00 43.30 1.75
468 471 7.598869 GTGACACTCTGTTTGTCTATGTATTCA 59.401 37.037 0.00 0.00 43.30 2.57
469 472 7.598869 TGACACTCTGTTTGTCTATGTATTCAC 59.401 37.037 11.01 0.00 43.30 3.18
470 473 7.441836 ACACTCTGTTTGTCTATGTATTCACA 58.558 34.615 0.00 0.00 39.52 3.58
471 474 7.385205 ACACTCTGTTTGTCTATGTATTCACAC 59.615 37.037 0.00 0.00 37.54 3.82
472 475 7.384932 CACTCTGTTTGTCTATGTATTCACACA 59.615 37.037 0.00 0.00 37.54 3.72
473 476 8.097038 ACTCTGTTTGTCTATGTATTCACACAT 58.903 33.333 0.00 0.00 41.88 3.21
474 477 8.255394 TCTGTTTGTCTATGTATTCACACATG 57.745 34.615 0.00 0.00 39.46 3.21
475 478 7.877612 TCTGTTTGTCTATGTATTCACACATGT 59.122 33.333 0.00 0.00 39.46 3.21
476 479 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
477 480 8.931775 TGTTTGTCTATGTATTCACACATGTAC 58.068 33.333 0.00 0.00 39.46 2.90
478 481 9.151471 GTTTGTCTATGTATTCACACATGTACT 57.849 33.333 0.00 0.00 39.46 2.73
486 489 8.542497 TGTATTCACACATGTACTAAGTTTCC 57.458 34.615 0.00 0.00 0.00 3.13
487 490 6.721571 ATTCACACATGTACTAAGTTTCCG 57.278 37.500 0.00 0.00 0.00 4.30
488 491 4.562082 TCACACATGTACTAAGTTTCCGG 58.438 43.478 0.00 0.00 0.00 5.14
489 492 4.039488 TCACACATGTACTAAGTTTCCGGT 59.961 41.667 0.00 0.00 0.00 5.28
490 493 4.753107 CACACATGTACTAAGTTTCCGGTT 59.247 41.667 0.00 0.00 0.00 4.44
491 494 5.927689 CACACATGTACTAAGTTTCCGGTTA 59.072 40.000 0.00 0.00 0.00 2.85
492 495 6.424509 CACACATGTACTAAGTTTCCGGTTAA 59.575 38.462 0.00 0.00 0.00 2.01
493 496 7.118680 CACACATGTACTAAGTTTCCGGTTAAT 59.881 37.037 0.00 0.00 0.00 1.40
494 497 8.313292 ACACATGTACTAAGTTTCCGGTTAATA 58.687 33.333 0.00 0.00 0.00 0.98
495 498 8.598075 CACATGTACTAAGTTTCCGGTTAATAC 58.402 37.037 0.00 0.00 0.00 1.89
496 499 8.313292 ACATGTACTAAGTTTCCGGTTAATACA 58.687 33.333 0.00 3.81 28.60 2.29
497 500 9.153721 CATGTACTAAGTTTCCGGTTAATACAA 57.846 33.333 0.00 0.00 28.05 2.41
498 501 9.895138 ATGTACTAAGTTTCCGGTTAATACAAT 57.105 29.630 0.00 0.00 28.05 2.71
499 502 9.723601 TGTACTAAGTTTCCGGTTAATACAATT 57.276 29.630 0.00 0.00 0.00 2.32
504 507 8.502105 AAGTTTCCGGTTAATACAATTCTAGG 57.498 34.615 0.00 0.00 0.00 3.02
505 508 7.854337 AGTTTCCGGTTAATACAATTCTAGGA 58.146 34.615 0.00 0.00 0.00 2.94
506 509 8.491958 AGTTTCCGGTTAATACAATTCTAGGAT 58.508 33.333 0.00 0.00 0.00 3.24
507 510 8.557029 GTTTCCGGTTAATACAATTCTAGGATG 58.443 37.037 0.00 0.00 0.00 3.51
508 511 7.606135 TCCGGTTAATACAATTCTAGGATGA 57.394 36.000 0.00 0.00 0.00 2.92
509 512 8.025270 TCCGGTTAATACAATTCTAGGATGAA 57.975 34.615 0.00 0.00 0.00 2.57
510 513 8.656806 TCCGGTTAATACAATTCTAGGATGAAT 58.343 33.333 0.00 0.00 38.19 2.57
511 514 9.938280 CCGGTTAATACAATTCTAGGATGAATA 57.062 33.333 0.00 0.00 35.82 1.75
570 573 7.881775 AACAACTTTATTATTGCCTCTAGGG 57.118 36.000 0.00 0.00 35.18 3.53
583 586 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
617 622 4.546829 ATGCCTTTGACCGTTAACTCTA 57.453 40.909 3.71 0.00 0.00 2.43
757 770 0.179105 ATTCGTATACGTGGGCGCAA 60.179 50.000 23.67 10.09 42.83 4.85
874 901 2.306847 CCTACCATTTCCCCAAATCCG 58.693 52.381 0.00 0.00 28.97 4.18
934 963 2.654079 CGCTCTCCTCCACTGCCTT 61.654 63.158 0.00 0.00 0.00 4.35
983 1012 2.026822 GCATCCTCTTCCTCACCTTCAA 60.027 50.000 0.00 0.00 0.00 2.69
1060 1089 3.402681 TAGTGGAGCTGCAGGGCC 61.403 66.667 17.12 0.00 0.00 5.80
1152 1193 0.842030 ATGTGGAGAAGGAGGTGGCA 60.842 55.000 0.00 0.00 0.00 4.92
1259 1323 3.981211 AGGTATTTGCACTTGCTTGTTG 58.019 40.909 2.33 0.00 42.66 3.33
1302 1366 5.152623 AGCTTGTAGAGTTAGTTGCATCA 57.847 39.130 0.00 0.00 0.00 3.07
1448 1520 6.309712 TGCAAAAATGCTAGATAGATCTGC 57.690 37.500 5.18 0.00 37.76 4.26
1464 1536 6.089808 AGATCTGCATGAGAGATAGGGATA 57.910 41.667 0.00 0.00 32.80 2.59
1730 1838 4.587584 TCAATGTGTGTGCATGACAATT 57.412 36.364 0.00 4.17 35.91 2.32
1852 2040 9.256228 TGGATGTAACTATATATTCAGGAGGAC 57.744 37.037 0.00 0.00 0.00 3.85
1864 2055 0.546747 AGGAGGACGATGGTTGGGAA 60.547 55.000 0.00 0.00 0.00 3.97
2188 2416 1.076412 TGCACCACCAAGCCAAAGA 60.076 52.632 0.00 0.00 0.00 2.52
2296 2526 2.125512 CCCTCGCGAAAGTCCTGG 60.126 66.667 11.33 5.71 0.00 4.45
2373 2625 5.295787 GTGAACTTTGTGTGTGAACTGGATA 59.704 40.000 0.00 0.00 0.00 2.59
2515 2776 4.083324 AGTTTAGGTGTTGCAATGATCACG 60.083 41.667 0.59 0.00 0.00 4.35
2709 2975 5.229887 CGTGTTTATTAGTCAAATGCATGCC 59.770 40.000 16.68 0.00 0.00 4.40
2740 3006 4.528206 ACCAGCATGTCTCATTATCCGATA 59.472 41.667 0.00 0.00 0.00 2.92
2833 3107 9.656323 AACCTATCTATGTTTGTGTAGGAGATA 57.344 33.333 3.46 0.00 34.29 1.98
2847 3121 7.826744 TGTGTAGGAGATAATGTGTGCAAAATA 59.173 33.333 0.00 0.00 0.00 1.40
3011 3288 7.889469 ACACATATTCATGAAGGAAATATGCC 58.111 34.615 19.15 0.00 35.96 4.40
3012 3289 7.039504 ACACATATTCATGAAGGAAATATGCCC 60.040 37.037 19.15 0.00 35.96 5.36
3013 3290 7.177921 CACATATTCATGAAGGAAATATGCCCT 59.822 37.037 19.15 4.71 35.96 5.19
3014 3291 8.393259 ACATATTCATGAAGGAAATATGCCCTA 58.607 33.333 19.15 3.42 35.96 3.53
3015 3292 8.900781 CATATTCATGAAGGAAATATGCCCTAG 58.099 37.037 14.54 0.00 33.67 3.02
3016 3293 6.514012 TTCATGAAGGAAATATGCCCTAGA 57.486 37.500 3.38 0.00 31.36 2.43
3017 3294 6.119240 TCATGAAGGAAATATGCCCTAGAG 57.881 41.667 0.00 0.00 31.36 2.43
3018 3295 4.982241 TGAAGGAAATATGCCCTAGAGG 57.018 45.455 0.00 0.00 39.47 3.69
3034 3311 7.881775 CCCTAGAGGCAATTATAAAGTTGTT 57.118 36.000 0.00 0.00 0.00 2.83
3035 3312 8.974060 CCCTAGAGGCAATTATAAAGTTGTTA 57.026 34.615 0.00 0.00 0.00 2.41
3036 3313 9.574516 CCCTAGAGGCAATTATAAAGTTGTTAT 57.425 33.333 0.00 0.00 0.00 1.89
3102 3379 9.841295 TGCTAGAATTATATTAACCGGAAACTT 57.159 29.630 9.46 0.00 0.00 2.66
3111 3388 8.974060 ATATTAACCGGAAACTTGATACATGT 57.026 30.769 9.46 2.69 0.00 3.21
3112 3389 6.489127 TTAACCGGAAACTTGATACATGTG 57.511 37.500 9.46 0.00 0.00 3.21
3113 3390 4.015872 ACCGGAAACTTGATACATGTGT 57.984 40.909 9.46 0.10 0.00 3.72
3114 3391 3.751175 ACCGGAAACTTGATACATGTGTG 59.249 43.478 9.46 0.00 0.00 3.82
3115 3392 3.126858 CCGGAAACTTGATACATGTGTGG 59.873 47.826 9.11 0.00 0.00 4.17
3116 3393 4.000325 CGGAAACTTGATACATGTGTGGA 59.000 43.478 9.11 0.00 0.00 4.02
3117 3394 4.635765 CGGAAACTTGATACATGTGTGGAT 59.364 41.667 9.11 0.00 0.00 3.41
3118 3395 5.815222 CGGAAACTTGATACATGTGTGGATA 59.185 40.000 9.11 0.00 0.00 2.59
3119 3396 6.238103 CGGAAACTTGATACATGTGTGGATAC 60.238 42.308 9.11 0.00 0.00 2.24
3137 3414 6.530120 TGGATACATAGACAAAACACTGTGT 58.470 36.000 7.80 7.80 46.17 3.72
3138 3415 6.649141 TGGATACATAGACAAAACACTGTGTC 59.351 38.462 14.68 0.98 46.17 3.67
3139 3416 6.092259 GGATACATAGACAAAACACTGTGTCC 59.908 42.308 14.68 1.97 44.30 4.02
3140 3417 4.134563 ACATAGACAAAACACTGTGTCCC 58.865 43.478 14.68 2.36 44.30 4.46
3141 3418 4.141482 ACATAGACAAAACACTGTGTCCCT 60.141 41.667 14.68 9.25 44.30 4.20
3142 3419 5.071250 ACATAGACAAAACACTGTGTCCCTA 59.929 40.000 14.68 10.93 44.30 3.53
3143 3420 4.073293 AGACAAAACACTGTGTCCCTAG 57.927 45.455 14.68 5.70 44.30 3.02
3144 3421 3.454812 AGACAAAACACTGTGTCCCTAGT 59.545 43.478 14.68 8.75 44.30 2.57
3145 3422 4.652421 AGACAAAACACTGTGTCCCTAGTA 59.348 41.667 14.68 0.00 44.30 1.82
3146 3423 5.129815 AGACAAAACACTGTGTCCCTAGTAA 59.870 40.000 14.68 0.00 44.30 2.24
3147 3424 5.365619 ACAAAACACTGTGTCCCTAGTAAG 58.634 41.667 14.68 0.40 0.00 2.34
3148 3425 3.679824 AACACTGTGTCCCTAGTAAGC 57.320 47.619 14.68 0.00 0.00 3.09
3149 3426 1.900486 ACACTGTGTCCCTAGTAAGCC 59.100 52.381 7.80 0.00 0.00 4.35
3150 3427 1.207329 CACTGTGTCCCTAGTAAGCCC 59.793 57.143 0.00 0.00 0.00 5.19
3151 3428 0.831307 CTGTGTCCCTAGTAAGCCCC 59.169 60.000 0.00 0.00 0.00 5.80
3152 3429 0.416231 TGTGTCCCTAGTAAGCCCCT 59.584 55.000 0.00 0.00 0.00 4.79
3153 3430 1.647506 TGTGTCCCTAGTAAGCCCCTA 59.352 52.381 0.00 0.00 0.00 3.53
3154 3431 2.037901 GTGTCCCTAGTAAGCCCCTAC 58.962 57.143 0.00 0.00 0.00 3.18
3155 3432 1.935196 TGTCCCTAGTAAGCCCCTACT 59.065 52.381 0.00 0.00 36.16 2.57
3156 3433 3.117360 GTGTCCCTAGTAAGCCCCTACTA 60.117 52.174 0.00 0.00 34.03 1.82
3157 3434 3.139770 TGTCCCTAGTAAGCCCCTACTAG 59.860 52.174 14.24 14.24 45.92 2.57
3163 3440 4.103013 AGTAAGCCCCTACTAGACTAGC 57.897 50.000 9.52 0.00 30.13 3.42
3164 3441 3.723154 AGTAAGCCCCTACTAGACTAGCT 59.277 47.826 9.52 0.00 30.13 3.32
3165 3442 2.963599 AGCCCCTACTAGACTAGCTC 57.036 55.000 9.52 0.00 0.00 4.09
3166 3443 1.072648 AGCCCCTACTAGACTAGCTCG 59.927 57.143 9.52 0.00 0.00 5.03
3167 3444 1.202794 GCCCCTACTAGACTAGCTCGT 60.203 57.143 9.52 0.00 0.00 4.18
3168 3445 2.749132 GCCCCTACTAGACTAGCTCGTT 60.749 54.545 9.52 0.00 0.00 3.85
3169 3446 3.495806 GCCCCTACTAGACTAGCTCGTTA 60.496 52.174 9.52 0.00 0.00 3.18
3170 3447 4.712476 CCCCTACTAGACTAGCTCGTTAA 58.288 47.826 9.52 0.00 0.00 2.01
3171 3448 4.514816 CCCCTACTAGACTAGCTCGTTAAC 59.485 50.000 9.52 0.00 0.00 2.01
3172 3449 4.514816 CCCTACTAGACTAGCTCGTTAACC 59.485 50.000 9.52 0.00 0.00 2.85
3173 3450 5.121811 CCTACTAGACTAGCTCGTTAACCA 58.878 45.833 9.52 0.00 0.00 3.67
3174 3451 5.587844 CCTACTAGACTAGCTCGTTAACCAA 59.412 44.000 9.52 0.00 0.00 3.67
3175 3452 5.972107 ACTAGACTAGCTCGTTAACCAAA 57.028 39.130 9.52 0.00 0.00 3.28
3176 3453 5.952033 ACTAGACTAGCTCGTTAACCAAAG 58.048 41.667 9.52 0.00 0.00 2.77
3177 3454 5.709164 ACTAGACTAGCTCGTTAACCAAAGA 59.291 40.000 9.52 0.00 0.00 2.52
3178 3455 5.662674 AGACTAGCTCGTTAACCAAAGAT 57.337 39.130 0.00 0.00 0.00 2.40
3179 3456 6.770746 AGACTAGCTCGTTAACCAAAGATA 57.229 37.500 0.00 0.00 0.00 1.98
3180 3457 6.797454 AGACTAGCTCGTTAACCAAAGATAG 58.203 40.000 15.55 15.55 0.00 2.08
3181 3458 6.377712 AGACTAGCTCGTTAACCAAAGATAGT 59.622 38.462 19.78 19.78 0.00 2.12
3182 3459 6.932947 ACTAGCTCGTTAACCAAAGATAGTT 58.067 36.000 16.45 6.93 0.00 2.24
3183 3460 8.059798 ACTAGCTCGTTAACCAAAGATAGTTA 57.940 34.615 16.45 0.00 0.00 2.24
3184 3461 8.526147 ACTAGCTCGTTAACCAAAGATAGTTAA 58.474 33.333 16.45 0.00 36.39 2.01
3185 3462 7.829378 AGCTCGTTAACCAAAGATAGTTAAG 57.171 36.000 0.00 0.00 38.69 1.85
3186 3463 7.384477 AGCTCGTTAACCAAAGATAGTTAAGT 58.616 34.615 0.00 0.00 38.69 2.24
3187 3464 7.876582 AGCTCGTTAACCAAAGATAGTTAAGTT 59.123 33.333 0.00 0.00 38.69 2.66
3188 3465 8.501580 GCTCGTTAACCAAAGATAGTTAAGTTT 58.498 33.333 0.00 0.00 38.69 2.66
3190 3467 8.992073 TCGTTAACCAAAGATAGTTAAGTTTCC 58.008 33.333 0.00 0.00 38.69 3.13
3191 3468 8.996271 CGTTAACCAAAGATAGTTAAGTTTCCT 58.004 33.333 0.00 0.00 38.69 3.36
3195 3472 8.859236 ACCAAAGATAGTTAAGTTTCCTAACC 57.141 34.615 0.00 0.00 34.71 2.85
3196 3473 8.442374 ACCAAAGATAGTTAAGTTTCCTAACCA 58.558 33.333 0.00 0.00 34.71 3.67
3197 3474 9.462606 CCAAAGATAGTTAAGTTTCCTAACCAT 57.537 33.333 0.00 0.00 34.71 3.55
3205 3482 8.603304 AGTTAAGTTTCCTAACCATAGACATGT 58.397 33.333 0.00 0.00 34.71 3.21
3206 3483 8.665685 GTTAAGTTTCCTAACCATAGACATGTG 58.334 37.037 1.15 0.00 34.71 3.21
3207 3484 6.374417 AGTTTCCTAACCATAGACATGTGT 57.626 37.500 1.15 0.22 34.71 3.72
3208 3485 6.779860 AGTTTCCTAACCATAGACATGTGTT 58.220 36.000 1.15 3.14 34.71 3.32
3209 3486 6.655003 AGTTTCCTAACCATAGACATGTGTTG 59.345 38.462 1.15 0.54 34.71 3.33
3210 3487 5.755409 TCCTAACCATAGACATGTGTTGT 57.245 39.130 1.15 0.00 42.79 3.32
3223 3500 5.214417 ACATGTGTTGTCATTTGATGAACG 58.786 37.500 0.00 0.00 41.69 3.95
3224 3501 4.221926 TGTGTTGTCATTTGATGAACGG 57.778 40.909 0.00 0.00 41.69 4.44
3225 3502 3.004210 TGTGTTGTCATTTGATGAACGGG 59.996 43.478 0.00 0.00 41.69 5.28
3226 3503 3.252215 GTGTTGTCATTTGATGAACGGGA 59.748 43.478 0.00 0.00 41.69 5.14
3227 3504 4.078537 TGTTGTCATTTGATGAACGGGAT 58.921 39.130 0.00 0.00 41.69 3.85
3228 3505 4.155826 TGTTGTCATTTGATGAACGGGATC 59.844 41.667 0.00 0.00 41.69 3.36
3229 3506 3.278574 TGTCATTTGATGAACGGGATCC 58.721 45.455 1.92 1.92 41.69 3.36
3230 3507 2.618709 GTCATTTGATGAACGGGATCCC 59.381 50.000 22.12 22.12 41.69 3.85
3231 3508 2.240921 TCATTTGATGAACGGGATCCCA 59.759 45.455 30.42 11.55 36.11 4.37
3232 3509 3.117550 TCATTTGATGAACGGGATCCCAT 60.118 43.478 30.42 18.51 36.11 4.00
3233 3510 2.638480 TTGATGAACGGGATCCCATC 57.362 50.000 30.42 25.47 36.77 3.51
3234 3511 1.506025 TGATGAACGGGATCCCATCA 58.494 50.000 29.17 29.17 41.90 3.07
3235 3512 2.057140 TGATGAACGGGATCCCATCAT 58.943 47.619 33.78 33.78 41.79 2.45
3236 3513 2.442878 TGATGAACGGGATCCCATCATT 59.557 45.455 33.70 23.53 40.28 2.57
3237 3514 3.650461 TGATGAACGGGATCCCATCATTA 59.350 43.478 33.70 29.64 40.28 1.90
3238 3515 3.769739 TGAACGGGATCCCATCATTAG 57.230 47.619 30.42 14.39 35.37 1.73
3239 3516 2.371841 TGAACGGGATCCCATCATTAGG 59.628 50.000 30.42 13.64 35.37 2.69
3240 3517 2.415983 ACGGGATCCCATCATTAGGA 57.584 50.000 30.42 0.00 36.36 2.94
3241 3518 2.260822 ACGGGATCCCATCATTAGGAG 58.739 52.381 30.42 12.17 35.08 3.69
3242 3519 2.158158 ACGGGATCCCATCATTAGGAGA 60.158 50.000 30.42 0.00 35.08 3.71
3243 3520 2.906389 CGGGATCCCATCATTAGGAGAA 59.094 50.000 30.42 0.00 35.08 2.87
3244 3521 3.521126 CGGGATCCCATCATTAGGAGAAT 59.479 47.826 30.42 0.00 35.08 2.40
3245 3522 4.624843 CGGGATCCCATCATTAGGAGAATG 60.625 50.000 30.42 4.18 35.08 2.67
3246 3523 4.537688 GGGATCCCATCATTAGGAGAATGA 59.462 45.833 26.95 2.66 40.50 2.57
3247 3524 5.193325 GGGATCCCATCATTAGGAGAATGAT 59.807 44.000 26.95 6.90 45.40 2.45
3255 3532 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
3256 3533 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
3257 3534 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
3258 3535 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
3259 3536 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
3260 3537 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
3261 3538 5.132312 AGGAGAATGATGTGATGGACAAGAT 59.868 40.000 0.00 0.00 38.36 2.40
3262 3539 5.469421 GGAGAATGATGTGATGGACAAGATC 59.531 44.000 0.00 0.00 38.36 2.75
3275 3552 4.429854 GACAAGATCCATCCCTTAGCTT 57.570 45.455 0.00 0.00 0.00 3.74
3276 3553 5.552870 GACAAGATCCATCCCTTAGCTTA 57.447 43.478 0.00 0.00 0.00 3.09
3277 3554 5.546526 GACAAGATCCATCCCTTAGCTTAG 58.453 45.833 0.00 0.00 0.00 2.18
3278 3555 4.202409 ACAAGATCCATCCCTTAGCTTAGC 60.202 45.833 0.00 0.00 0.00 3.09
3279 3556 3.591789 AGATCCATCCCTTAGCTTAGCA 58.408 45.455 7.07 0.00 0.00 3.49
3280 3557 4.174383 AGATCCATCCCTTAGCTTAGCAT 58.826 43.478 7.07 0.00 0.00 3.79
3281 3558 3.777106 TCCATCCCTTAGCTTAGCATG 57.223 47.619 7.07 0.00 0.00 4.06
3282 3559 3.048600 TCCATCCCTTAGCTTAGCATGT 58.951 45.455 7.07 0.00 0.00 3.21
3283 3560 3.459598 TCCATCCCTTAGCTTAGCATGTT 59.540 43.478 7.07 0.00 0.00 2.71
3284 3561 3.567164 CCATCCCTTAGCTTAGCATGTTG 59.433 47.826 7.07 0.00 0.00 3.33
3285 3562 4.454678 CATCCCTTAGCTTAGCATGTTGA 58.545 43.478 7.07 0.00 0.00 3.18
3286 3563 4.778213 TCCCTTAGCTTAGCATGTTGAT 57.222 40.909 7.07 0.00 0.00 2.57
3287 3564 4.708177 TCCCTTAGCTTAGCATGTTGATC 58.292 43.478 7.07 0.00 0.00 2.92
3288 3565 4.164030 TCCCTTAGCTTAGCATGTTGATCA 59.836 41.667 7.07 0.00 0.00 2.92
3289 3566 5.068636 CCCTTAGCTTAGCATGTTGATCAT 58.931 41.667 7.07 0.00 37.22 2.45
3290 3567 5.533903 CCCTTAGCTTAGCATGTTGATCATT 59.466 40.000 7.07 0.00 34.09 2.57
3291 3568 6.293845 CCCTTAGCTTAGCATGTTGATCATTC 60.294 42.308 7.07 0.00 34.09 2.67
3292 3569 6.261603 CCTTAGCTTAGCATGTTGATCATTCA 59.738 38.462 7.07 0.00 34.09 2.57
3293 3570 5.752892 AGCTTAGCATGTTGATCATTCAG 57.247 39.130 7.07 0.00 34.09 3.02
3294 3571 5.191426 AGCTTAGCATGTTGATCATTCAGT 58.809 37.500 7.07 0.00 34.09 3.41
3295 3572 5.651139 AGCTTAGCATGTTGATCATTCAGTT 59.349 36.000 7.07 0.00 34.09 3.16
3296 3573 6.152323 AGCTTAGCATGTTGATCATTCAGTTT 59.848 34.615 7.07 0.00 34.09 2.66
3297 3574 6.810182 GCTTAGCATGTTGATCATTCAGTTTT 59.190 34.615 0.00 0.00 34.09 2.43
3298 3575 7.970061 GCTTAGCATGTTGATCATTCAGTTTTA 59.030 33.333 0.00 0.00 34.09 1.52
3301 3578 8.697846 AGCATGTTGATCATTCAGTTTTATTG 57.302 30.769 0.00 0.00 34.09 1.90
3302 3579 7.277098 AGCATGTTGATCATTCAGTTTTATTGC 59.723 33.333 0.00 4.81 34.09 3.56
3303 3580 7.464977 GCATGTTGATCATTCAGTTTTATTGCC 60.465 37.037 0.00 0.00 34.09 4.52
3304 3581 6.990798 TGTTGATCATTCAGTTTTATTGCCA 58.009 32.000 0.00 0.00 32.27 4.92
3305 3582 7.613585 TGTTGATCATTCAGTTTTATTGCCAT 58.386 30.769 0.00 0.00 32.27 4.40
3306 3583 8.095792 TGTTGATCATTCAGTTTTATTGCCATT 58.904 29.630 0.00 0.00 32.27 3.16
3307 3584 8.385111 GTTGATCATTCAGTTTTATTGCCATTG 58.615 33.333 0.00 0.00 32.27 2.82
3308 3585 6.535865 TGATCATTCAGTTTTATTGCCATTGC 59.464 34.615 0.00 0.00 38.26 3.56
3309 3586 6.040209 TCATTCAGTTTTATTGCCATTGCT 57.960 33.333 0.00 0.00 38.71 3.91
3310 3587 6.465948 TCATTCAGTTTTATTGCCATTGCTT 58.534 32.000 0.00 0.00 38.71 3.91
3311 3588 6.935771 TCATTCAGTTTTATTGCCATTGCTTT 59.064 30.769 0.00 0.00 38.71 3.51
3312 3589 6.783892 TTCAGTTTTATTGCCATTGCTTTC 57.216 33.333 0.00 0.00 38.71 2.62
3313 3590 6.100404 TCAGTTTTATTGCCATTGCTTTCT 57.900 33.333 0.00 0.00 38.71 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.032403 GCCTTGCAAGCAATGTGACA 59.968 50.000 21.43 0.00 35.20 3.58
130 133 1.798813 GTGTCTCCGATGGTGTTTGTC 59.201 52.381 0.00 0.00 0.00 3.18
212 215 1.480954 GCAACTCCCGAATACCAGAGA 59.519 52.381 0.00 0.00 0.00 3.10
295 298 5.503662 TCCGTTAACTTAGCACGATGATA 57.496 39.130 3.71 0.00 35.93 2.15
310 313 5.178623 GTGATTGACTTGACACATCCGTTAA 59.821 40.000 0.00 0.00 34.05 2.01
320 323 6.470278 AGAGAATGATGTGATTGACTTGACA 58.530 36.000 0.00 0.00 0.00 3.58
416 419 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
417 420 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
418 421 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
419 422 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
420 423 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
421 424 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
422 425 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
423 426 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
424 427 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
425 428 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
426 429 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
427 430 5.104277 AGAGTGTCACTAGTATGCCTCTACT 60.104 44.000 5.21 0.00 36.04 2.57
428 431 5.008217 CAGAGTGTCACTAGTATGCCTCTAC 59.992 48.000 5.21 0.00 0.00 2.59
429 432 5.126779 CAGAGTGTCACTAGTATGCCTCTA 58.873 45.833 5.21 0.00 0.00 2.43
430 433 3.951037 CAGAGTGTCACTAGTATGCCTCT 59.049 47.826 5.21 1.89 0.00 3.69
431 434 3.697045 ACAGAGTGTCACTAGTATGCCTC 59.303 47.826 5.21 0.00 0.00 4.70
432 435 3.702792 ACAGAGTGTCACTAGTATGCCT 58.297 45.455 5.21 0.00 0.00 4.75
433 436 4.457834 AACAGAGTGTCACTAGTATGCC 57.542 45.455 5.21 0.00 0.00 4.40
434 437 5.230942 ACAAACAGAGTGTCACTAGTATGC 58.769 41.667 5.21 0.00 0.00 3.14
435 438 6.682746 AGACAAACAGAGTGTCACTAGTATG 58.317 40.000 5.21 5.56 46.44 2.39
436 439 6.902771 AGACAAACAGAGTGTCACTAGTAT 57.097 37.500 5.21 0.00 46.44 2.12
437 440 7.447545 ACATAGACAAACAGAGTGTCACTAGTA 59.552 37.037 5.21 0.00 46.44 1.82
438 441 6.265649 ACATAGACAAACAGAGTGTCACTAGT 59.734 38.462 5.21 5.11 46.44 2.57
439 442 6.682746 ACATAGACAAACAGAGTGTCACTAG 58.317 40.000 5.21 4.44 46.44 2.57
440 443 6.650427 ACATAGACAAACAGAGTGTCACTA 57.350 37.500 5.21 0.00 46.44 2.74
441 444 5.537300 ACATAGACAAACAGAGTGTCACT 57.463 39.130 4.81 4.81 46.44 3.41
442 445 7.598869 TGAATACATAGACAAACAGAGTGTCAC 59.401 37.037 7.26 0.00 46.44 3.67
443 446 7.598869 GTGAATACATAGACAAACAGAGTGTCA 59.401 37.037 7.26 0.00 46.44 3.58
444 447 7.598869 TGTGAATACATAGACAAACAGAGTGTC 59.401 37.037 0.00 0.00 44.75 3.67
445 448 7.385205 GTGTGAATACATAGACAAACAGAGTGT 59.615 37.037 0.00 0.00 39.39 3.55
446 449 7.384932 TGTGTGAATACATAGACAAACAGAGTG 59.615 37.037 0.00 0.00 39.39 3.51
447 450 7.441836 TGTGTGAATACATAGACAAACAGAGT 58.558 34.615 0.00 0.00 39.39 3.24
448 451 7.889589 TGTGTGAATACATAGACAAACAGAG 57.110 36.000 0.00 0.00 39.39 3.35
449 452 7.877612 ACATGTGTGAATACATAGACAAACAGA 59.122 33.333 0.00 0.00 39.17 3.41
450 453 8.032952 ACATGTGTGAATACATAGACAAACAG 57.967 34.615 0.00 0.00 39.17 3.16
451 454 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
452 455 9.151471 AGTACATGTGTGAATACATAGACAAAC 57.849 33.333 9.11 0.00 39.17 2.93
460 463 9.162764 GGAAACTTAGTACATGTGTGAATACAT 57.837 33.333 9.11 0.00 41.77 2.29
461 464 7.329962 CGGAAACTTAGTACATGTGTGAATACA 59.670 37.037 9.11 0.00 34.63 2.29
462 465 7.201496 CCGGAAACTTAGTACATGTGTGAATAC 60.201 40.741 9.11 0.00 0.00 1.89
463 466 6.814644 CCGGAAACTTAGTACATGTGTGAATA 59.185 38.462 9.11 0.00 0.00 1.75
464 467 5.642063 CCGGAAACTTAGTACATGTGTGAAT 59.358 40.000 9.11 0.00 0.00 2.57
465 468 4.992319 CCGGAAACTTAGTACATGTGTGAA 59.008 41.667 9.11 0.00 0.00 3.18
466 469 4.039488 ACCGGAAACTTAGTACATGTGTGA 59.961 41.667 9.46 0.00 0.00 3.58
467 470 4.312443 ACCGGAAACTTAGTACATGTGTG 58.688 43.478 9.46 0.00 0.00 3.82
468 471 4.612264 ACCGGAAACTTAGTACATGTGT 57.388 40.909 9.46 0.00 0.00 3.72
469 472 7.605410 ATTAACCGGAAACTTAGTACATGTG 57.395 36.000 9.46 0.00 0.00 3.21
470 473 8.313292 TGTATTAACCGGAAACTTAGTACATGT 58.687 33.333 9.46 2.69 0.00 3.21
471 474 8.706492 TGTATTAACCGGAAACTTAGTACATG 57.294 34.615 9.46 0.00 0.00 3.21
472 475 9.895138 ATTGTATTAACCGGAAACTTAGTACAT 57.105 29.630 9.46 2.28 29.53 2.29
473 476 9.723601 AATTGTATTAACCGGAAACTTAGTACA 57.276 29.630 9.46 10.88 28.23 2.90
478 481 9.603921 CCTAGAATTGTATTAACCGGAAACTTA 57.396 33.333 9.46 0.00 0.00 2.24
479 482 8.323567 TCCTAGAATTGTATTAACCGGAAACTT 58.676 33.333 9.46 0.00 0.00 2.66
480 483 7.854337 TCCTAGAATTGTATTAACCGGAAACT 58.146 34.615 9.46 0.00 0.00 2.66
481 484 8.557029 CATCCTAGAATTGTATTAACCGGAAAC 58.443 37.037 9.46 0.00 0.00 2.78
482 485 8.487848 TCATCCTAGAATTGTATTAACCGGAAA 58.512 33.333 9.46 1.61 0.00 3.13
483 486 8.025270 TCATCCTAGAATTGTATTAACCGGAA 57.975 34.615 9.46 0.00 0.00 4.30
484 487 7.606135 TCATCCTAGAATTGTATTAACCGGA 57.394 36.000 9.46 0.00 0.00 5.14
485 488 8.848474 ATTCATCCTAGAATTGTATTAACCGG 57.152 34.615 0.00 0.00 34.70 5.28
544 547 9.574516 CCCTAGAGGCAATAATAAAGTTGTTAT 57.425 33.333 0.00 0.00 0.00 1.89
545 548 8.974060 CCCTAGAGGCAATAATAAAGTTGTTA 57.026 34.615 0.00 0.00 0.00 2.41
546 549 7.881775 CCCTAGAGGCAATAATAAAGTTGTT 57.118 36.000 0.00 0.00 0.00 2.83
562 565 4.349342 ACTGAAGGAAATATGCCCTAGAGG 59.651 45.833 0.00 0.00 39.47 3.69
563 566 5.546526 GACTGAAGGAAATATGCCCTAGAG 58.453 45.833 0.00 0.46 31.36 2.43
564 567 4.039245 CGACTGAAGGAAATATGCCCTAGA 59.961 45.833 0.00 0.00 31.36 2.43
565 568 4.202264 ACGACTGAAGGAAATATGCCCTAG 60.202 45.833 0.00 0.00 31.36 3.02
566 569 3.709653 ACGACTGAAGGAAATATGCCCTA 59.290 43.478 0.00 0.00 31.36 3.53
567 570 2.505819 ACGACTGAAGGAAATATGCCCT 59.494 45.455 0.00 0.00 0.00 5.19
568 571 2.872858 GACGACTGAAGGAAATATGCCC 59.127 50.000 0.00 0.00 0.00 5.36
569 572 2.540101 CGACGACTGAAGGAAATATGCC 59.460 50.000 0.00 0.00 0.00 4.40
570 573 2.540101 CCGACGACTGAAGGAAATATGC 59.460 50.000 0.00 0.00 0.00 3.14
571 574 3.123804 CCCGACGACTGAAGGAAATATG 58.876 50.000 0.00 0.00 0.00 1.78
572 575 2.764572 ACCCGACGACTGAAGGAAATAT 59.235 45.455 0.00 0.00 0.00 1.28
573 576 2.165030 GACCCGACGACTGAAGGAAATA 59.835 50.000 0.00 0.00 0.00 1.40
574 577 0.974383 ACCCGACGACTGAAGGAAAT 59.026 50.000 0.00 0.00 0.00 2.17
575 578 0.316204 GACCCGACGACTGAAGGAAA 59.684 55.000 0.00 0.00 0.00 3.13
576 579 0.824595 TGACCCGACGACTGAAGGAA 60.825 55.000 0.00 0.00 0.00 3.36
577 580 0.824595 TTGACCCGACGACTGAAGGA 60.825 55.000 0.00 0.00 0.00 3.36
578 581 0.246635 ATTGACCCGACGACTGAAGG 59.753 55.000 0.00 0.00 0.00 3.46
579 582 1.350193 CATTGACCCGACGACTGAAG 58.650 55.000 0.00 0.00 0.00 3.02
580 583 0.669318 GCATTGACCCGACGACTGAA 60.669 55.000 0.00 0.00 0.00 3.02
581 584 1.080093 GCATTGACCCGACGACTGA 60.080 57.895 0.00 0.00 0.00 3.41
582 585 2.100631 GGCATTGACCCGACGACTG 61.101 63.158 0.00 0.00 0.00 3.51
583 586 1.827399 AAGGCATTGACCCGACGACT 61.827 55.000 0.00 0.00 0.00 4.18
639 644 0.834612 AACGGTCAAAGGTGGACTCA 59.165 50.000 0.00 0.00 35.61 3.41
757 770 2.029073 CGACCACGGTCAGTTGCT 59.971 61.111 16.23 0.00 44.77 3.91
934 963 1.008881 GAGCGATACGATGCGGTGA 60.009 57.895 0.00 0.00 38.45 4.02
983 1012 1.758514 ATCGGACAGATGGAGGCGT 60.759 57.895 0.00 0.00 38.36 5.68
1060 1089 1.447838 CTTCATCCGTGGTCACCGG 60.448 63.158 0.00 0.00 46.83 5.28
1259 1323 9.846248 CAAGCTAATATCCTAAATATTGCAACC 57.154 33.333 0.00 0.00 0.00 3.77
1302 1366 8.008513 ACTACCGTATGAATCACAATCTAACT 57.991 34.615 0.00 0.00 0.00 2.24
1448 1520 5.657745 AGCACAGATATCCCTATCTCTCATG 59.342 44.000 0.00 0.00 41.78 3.07
1464 1536 3.678289 TGTGTAGCATTGAAGCACAGAT 58.322 40.909 0.00 0.00 35.48 2.90
1582 1667 4.403432 CCCCATTCTGTGTAGCATTCAAAT 59.597 41.667 0.00 0.00 0.00 2.32
1600 1686 4.101430 GGCATATGACATTCAAAACCCCAT 59.899 41.667 6.97 0.00 0.00 4.00
2188 2416 2.668550 GAAGCGGCCGGACTTTGT 60.669 61.111 29.38 0.61 0.00 2.83
2246 2475 2.656002 CCCTGATCTTGTAGTCCTCGA 58.344 52.381 0.00 0.00 0.00 4.04
2296 2526 1.342374 ACATCAATTGGGAAGGGGAGC 60.342 52.381 5.42 0.00 0.00 4.70
2396 2648 9.262358 CCAGATGCATATATAGAACAGATCATG 57.738 37.037 0.00 0.00 0.00 3.07
2419 2678 8.103305 ACACAAATACCCAATATAGATAGCCAG 58.897 37.037 0.00 0.00 0.00 4.85
2515 2776 3.498927 AGCAACACTGAAATAGCATGC 57.501 42.857 10.51 10.51 34.56 4.06
2683 2948 6.692681 GCATGCATTTGACTAATAAACACGAT 59.307 34.615 14.21 0.00 0.00 3.73
2686 2951 6.332630 AGGCATGCATTTGACTAATAAACAC 58.667 36.000 21.36 0.00 31.50 3.32
2696 2961 2.289569 TGGGAAAAGGCATGCATTTGAC 60.290 45.455 28.87 23.49 30.04 3.18
2709 2975 1.815003 GAGACATGCTGGTGGGAAAAG 59.185 52.381 0.00 0.00 0.00 2.27
2740 3006 5.049405 GTCCTGTCGAATGTCAGTTCAAAAT 60.049 40.000 0.00 0.00 30.46 1.82
2794 3061 7.179269 ACATAGATAGGTTGCCAAGGTTTTAA 58.821 34.615 0.00 0.00 0.00 1.52
2833 3107 5.981088 TCACCTCATATTTTGCACACATT 57.019 34.783 0.00 0.00 0.00 2.71
2847 3121 4.624913 TGACCTCCTCTAAATCACCTCAT 58.375 43.478 0.00 0.00 0.00 2.90
2990 3267 8.839745 TCTAGGGCATATTTCCTTCATGAATAT 58.160 33.333 8.96 0.60 34.75 1.28
2997 3274 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
3010 3287 7.881775 AACAACTTTATAATTGCCTCTAGGG 57.118 36.000 0.00 0.00 35.18 3.53
3076 3353 9.841295 AAGTTTCCGGTTAATATAATTCTAGCA 57.159 29.630 0.00 0.00 0.00 3.49
3086 3363 8.836413 CACATGTATCAAGTTTCCGGTTAATAT 58.164 33.333 0.00 0.00 0.00 1.28
3087 3364 7.825270 ACACATGTATCAAGTTTCCGGTTAATA 59.175 33.333 0.00 0.00 0.00 0.98
3088 3365 6.657541 ACACATGTATCAAGTTTCCGGTTAAT 59.342 34.615 0.00 0.00 0.00 1.40
3089 3366 5.998981 ACACATGTATCAAGTTTCCGGTTAA 59.001 36.000 0.00 0.00 0.00 2.01
3090 3367 5.410132 CACACATGTATCAAGTTTCCGGTTA 59.590 40.000 0.00 0.00 0.00 2.85
3091 3368 4.215399 CACACATGTATCAAGTTTCCGGTT 59.785 41.667 0.00 0.00 0.00 4.44
3092 3369 3.751175 CACACATGTATCAAGTTTCCGGT 59.249 43.478 0.00 0.00 0.00 5.28
3093 3370 3.126858 CCACACATGTATCAAGTTTCCGG 59.873 47.826 0.00 0.00 0.00 5.14
3094 3371 4.000325 TCCACACATGTATCAAGTTTCCG 59.000 43.478 0.00 0.00 0.00 4.30
3095 3372 6.597672 TGTATCCACACATGTATCAAGTTTCC 59.402 38.462 0.00 0.00 0.00 3.13
3096 3373 7.609760 TGTATCCACACATGTATCAAGTTTC 57.390 36.000 0.00 0.00 0.00 2.78
3097 3374 9.330063 CTATGTATCCACACATGTATCAAGTTT 57.670 33.333 0.00 0.00 39.46 2.66
3098 3375 8.704668 TCTATGTATCCACACATGTATCAAGTT 58.295 33.333 0.00 0.00 39.46 2.66
3099 3376 8.144478 GTCTATGTATCCACACATGTATCAAGT 58.856 37.037 0.00 0.00 39.46 3.16
3100 3377 8.143835 TGTCTATGTATCCACACATGTATCAAG 58.856 37.037 0.00 0.00 39.46 3.02
3101 3378 8.017418 TGTCTATGTATCCACACATGTATCAA 57.983 34.615 0.00 0.00 39.46 2.57
3102 3379 7.595819 TGTCTATGTATCCACACATGTATCA 57.404 36.000 0.00 0.00 39.46 2.15
3103 3380 8.887036 TTTGTCTATGTATCCACACATGTATC 57.113 34.615 0.00 0.00 39.46 2.24
3104 3381 9.109393 GTTTTGTCTATGTATCCACACATGTAT 57.891 33.333 0.00 0.00 39.46 2.29
3105 3382 8.097662 TGTTTTGTCTATGTATCCACACATGTA 58.902 33.333 0.00 0.00 39.46 2.29
3106 3383 6.939730 TGTTTTGTCTATGTATCCACACATGT 59.060 34.615 0.00 0.00 39.46 3.21
3107 3384 7.119699 AGTGTTTTGTCTATGTATCCACACATG 59.880 37.037 0.00 0.00 39.46 3.21
3108 3385 7.119699 CAGTGTTTTGTCTATGTATCCACACAT 59.880 37.037 0.00 0.00 41.88 3.21
3109 3386 6.426633 CAGTGTTTTGTCTATGTATCCACACA 59.573 38.462 0.00 0.00 37.54 3.72
3110 3387 6.426937 ACAGTGTTTTGTCTATGTATCCACAC 59.573 38.462 0.00 0.00 37.54 3.82
3111 3388 6.426633 CACAGTGTTTTGTCTATGTATCCACA 59.573 38.462 0.00 0.00 39.52 4.17
3112 3389 6.426937 ACACAGTGTTTTGTCTATGTATCCAC 59.573 38.462 0.00 0.00 0.00 4.02
3113 3390 6.530120 ACACAGTGTTTTGTCTATGTATCCA 58.470 36.000 0.00 0.00 0.00 3.41
3114 3391 6.092259 GGACACAGTGTTTTGTCTATGTATCC 59.908 42.308 7.86 0.00 41.65 2.59
3115 3392 6.092259 GGGACACAGTGTTTTGTCTATGTATC 59.908 42.308 7.86 0.00 41.65 2.24
3116 3393 5.938125 GGGACACAGTGTTTTGTCTATGTAT 59.062 40.000 7.86 0.00 41.65 2.29
3117 3394 5.071250 AGGGACACAGTGTTTTGTCTATGTA 59.929 40.000 7.86 0.00 41.65 2.29
3118 3395 4.134563 GGGACACAGTGTTTTGTCTATGT 58.865 43.478 7.86 0.00 41.65 2.29
3119 3396 4.389374 AGGGACACAGTGTTTTGTCTATG 58.611 43.478 7.86 0.00 41.65 2.23
3120 3397 4.706842 AGGGACACAGTGTTTTGTCTAT 57.293 40.909 7.86 0.20 41.65 1.98
3121 3398 4.652421 ACTAGGGACACAGTGTTTTGTCTA 59.348 41.667 7.86 5.24 41.65 2.59
3122 3399 3.454812 ACTAGGGACACAGTGTTTTGTCT 59.545 43.478 7.86 4.38 41.65 3.41
3123 3400 3.805207 ACTAGGGACACAGTGTTTTGTC 58.195 45.455 7.86 0.00 41.28 3.18
3124 3401 3.926058 ACTAGGGACACAGTGTTTTGT 57.074 42.857 7.86 1.83 0.00 2.83
3125 3402 4.213482 GCTTACTAGGGACACAGTGTTTTG 59.787 45.833 7.86 1.23 0.00 2.44
3126 3403 4.386711 GCTTACTAGGGACACAGTGTTTT 58.613 43.478 7.86 0.00 0.00 2.43
3127 3404 3.244457 GGCTTACTAGGGACACAGTGTTT 60.244 47.826 7.86 0.00 0.00 2.83
3128 3405 2.302157 GGCTTACTAGGGACACAGTGTT 59.698 50.000 7.86 0.00 0.00 3.32
3129 3406 1.900486 GGCTTACTAGGGACACAGTGT 59.100 52.381 5.68 5.68 0.00 3.55
3130 3407 1.207329 GGGCTTACTAGGGACACAGTG 59.793 57.143 0.00 0.00 0.00 3.66
3131 3408 1.569653 GGGCTTACTAGGGACACAGT 58.430 55.000 0.00 0.00 0.00 3.55
3132 3409 0.831307 GGGGCTTACTAGGGACACAG 59.169 60.000 0.00 0.00 0.00 3.66
3133 3410 0.416231 AGGGGCTTACTAGGGACACA 59.584 55.000 0.00 0.00 0.00 3.72
3134 3411 2.037901 GTAGGGGCTTACTAGGGACAC 58.962 57.143 0.00 0.00 0.00 3.67
3135 3412 1.935196 AGTAGGGGCTTACTAGGGACA 59.065 52.381 0.00 0.00 32.25 4.02
3136 3413 2.771562 AGTAGGGGCTTACTAGGGAC 57.228 55.000 0.00 0.00 32.25 4.46
3137 3414 3.397282 GTCTAGTAGGGGCTTACTAGGGA 59.603 52.174 23.73 12.10 46.84 4.20
3138 3415 3.398629 AGTCTAGTAGGGGCTTACTAGGG 59.601 52.174 23.73 10.67 46.84 3.53
3139 3416 4.727792 AGTCTAGTAGGGGCTTACTAGG 57.272 50.000 23.73 13.24 46.84 3.02
3141 3418 4.912744 AGCTAGTCTAGTAGGGGCTTACTA 59.087 45.833 8.68 8.44 35.57 1.82
3142 3419 3.723154 AGCTAGTCTAGTAGGGGCTTACT 59.277 47.826 8.68 7.25 37.61 2.24
3143 3420 4.074259 GAGCTAGTCTAGTAGGGGCTTAC 58.926 52.174 8.68 0.00 0.00 2.34
3144 3421 3.244491 CGAGCTAGTCTAGTAGGGGCTTA 60.244 52.174 8.68 0.00 0.00 3.09
3145 3422 2.487625 CGAGCTAGTCTAGTAGGGGCTT 60.488 54.545 8.68 0.00 0.00 4.35
3146 3423 1.072648 CGAGCTAGTCTAGTAGGGGCT 59.927 57.143 8.68 0.00 0.00 5.19
3147 3424 1.202794 ACGAGCTAGTCTAGTAGGGGC 60.203 57.143 8.68 0.00 0.00 5.80
3148 3425 2.934886 ACGAGCTAGTCTAGTAGGGG 57.065 55.000 8.68 0.00 0.00 4.79
3149 3426 4.514816 GGTTAACGAGCTAGTCTAGTAGGG 59.485 50.000 8.68 0.00 30.15 3.53
3150 3427 5.121811 TGGTTAACGAGCTAGTCTAGTAGG 58.878 45.833 8.68 1.10 30.15 3.18
3151 3428 6.674694 TTGGTTAACGAGCTAGTCTAGTAG 57.325 41.667 8.68 3.39 30.15 2.57
3152 3429 6.881065 TCTTTGGTTAACGAGCTAGTCTAGTA 59.119 38.462 8.68 0.00 30.15 1.82
3153 3430 5.709164 TCTTTGGTTAACGAGCTAGTCTAGT 59.291 40.000 8.68 0.00 31.68 2.57
3154 3431 6.192234 TCTTTGGTTAACGAGCTAGTCTAG 57.808 41.667 0.00 2.18 0.00 2.43
3155 3432 6.770746 ATCTTTGGTTAACGAGCTAGTCTA 57.229 37.500 0.00 0.00 0.00 2.59
3156 3433 5.662674 ATCTTTGGTTAACGAGCTAGTCT 57.337 39.130 0.00 0.00 0.00 3.24
3157 3434 6.562518 ACTATCTTTGGTTAACGAGCTAGTC 58.437 40.000 0.00 0.00 0.00 2.59
3158 3435 6.527057 ACTATCTTTGGTTAACGAGCTAGT 57.473 37.500 0.00 6.31 0.00 2.57
3159 3436 8.922058 TTAACTATCTTTGGTTAACGAGCTAG 57.078 34.615 0.00 5.77 34.86 3.42
3160 3437 8.526147 ACTTAACTATCTTTGGTTAACGAGCTA 58.474 33.333 0.00 0.00 34.86 3.32
3161 3438 7.384477 ACTTAACTATCTTTGGTTAACGAGCT 58.616 34.615 0.00 0.00 34.86 4.09
3162 3439 7.592439 ACTTAACTATCTTTGGTTAACGAGC 57.408 36.000 0.00 0.00 34.86 5.03
3164 3441 8.992073 GGAAACTTAACTATCTTTGGTTAACGA 58.008 33.333 0.00 0.00 34.86 3.85
3165 3442 8.996271 AGGAAACTTAACTATCTTTGGTTAACG 58.004 33.333 0.00 0.00 37.44 3.18
3169 3446 9.293404 GGTTAGGAAACTTAACTATCTTTGGTT 57.707 33.333 0.00 0.00 43.67 3.67
3170 3447 8.442374 TGGTTAGGAAACTTAACTATCTTTGGT 58.558 33.333 0.00 0.00 43.67 3.67
3171 3448 8.857694 TGGTTAGGAAACTTAACTATCTTTGG 57.142 34.615 0.00 0.00 43.67 3.28
3179 3456 8.603304 ACATGTCTATGGTTAGGAAACTTAACT 58.397 33.333 0.00 0.00 39.25 2.24
3180 3457 8.665685 CACATGTCTATGGTTAGGAAACTTAAC 58.334 37.037 0.00 0.00 39.25 2.01
3181 3458 8.380099 ACACATGTCTATGGTTAGGAAACTTAA 58.620 33.333 0.00 0.00 39.25 1.85
3182 3459 7.913789 ACACATGTCTATGGTTAGGAAACTTA 58.086 34.615 0.00 0.00 39.25 2.24
3183 3460 6.779860 ACACATGTCTATGGTTAGGAAACTT 58.220 36.000 0.00 0.00 39.25 2.66
3184 3461 6.374417 ACACATGTCTATGGTTAGGAAACT 57.626 37.500 0.00 0.00 40.79 2.66
3185 3462 6.430000 ACAACACATGTCTATGGTTAGGAAAC 59.570 38.462 0.00 0.00 37.96 2.78
3186 3463 6.539173 ACAACACATGTCTATGGTTAGGAAA 58.461 36.000 0.00 0.00 37.96 3.13
3187 3464 6.121776 ACAACACATGTCTATGGTTAGGAA 57.878 37.500 0.00 0.00 37.96 3.36
3188 3465 5.755409 ACAACACATGTCTATGGTTAGGA 57.245 39.130 0.00 0.00 37.96 2.94
3201 3478 4.618067 CCGTTCATCAAATGACAACACATG 59.382 41.667 0.00 0.00 39.39 3.21
3202 3479 4.321156 CCCGTTCATCAAATGACAACACAT 60.321 41.667 7.48 0.00 39.39 3.21
3203 3480 3.004210 CCCGTTCATCAAATGACAACACA 59.996 43.478 7.48 0.00 39.39 3.72
3204 3481 3.252215 TCCCGTTCATCAAATGACAACAC 59.748 43.478 7.48 0.00 39.39 3.32
3205 3482 3.481453 TCCCGTTCATCAAATGACAACA 58.519 40.909 7.48 0.00 39.39 3.33
3206 3483 4.438744 GGATCCCGTTCATCAAATGACAAC 60.439 45.833 0.00 0.00 39.39 3.32
3207 3484 3.694072 GGATCCCGTTCATCAAATGACAA 59.306 43.478 0.00 0.00 39.39 3.18
3208 3485 3.278574 GGATCCCGTTCATCAAATGACA 58.721 45.455 0.00 0.00 39.39 3.58
3209 3486 2.618709 GGGATCCCGTTCATCAAATGAC 59.381 50.000 17.02 0.00 39.39 3.06
3210 3487 2.240921 TGGGATCCCGTTCATCAAATGA 59.759 45.455 26.03 0.00 39.42 2.57
3211 3488 2.653726 TGGGATCCCGTTCATCAAATG 58.346 47.619 26.03 0.00 39.42 2.32
3212 3489 3.117550 TGATGGGATCCCGTTCATCAAAT 60.118 43.478 26.78 10.54 41.75 2.32
3213 3490 2.240921 TGATGGGATCCCGTTCATCAAA 59.759 45.455 26.78 5.47 41.75 2.69
3214 3491 1.843206 TGATGGGATCCCGTTCATCAA 59.157 47.619 26.78 6.28 41.75 2.57
3215 3492 1.506025 TGATGGGATCCCGTTCATCA 58.494 50.000 26.78 24.03 42.24 3.07
3216 3493 2.867109 ATGATGGGATCCCGTTCATC 57.133 50.000 30.18 24.59 37.12 2.92
3217 3494 3.009473 CCTAATGATGGGATCCCGTTCAT 59.991 47.826 30.18 30.18 40.77 2.57
3218 3495 2.371841 CCTAATGATGGGATCCCGTTCA 59.628 50.000 28.91 28.91 39.42 3.18
3219 3496 2.637872 TCCTAATGATGGGATCCCGTTC 59.362 50.000 26.78 23.70 39.42 3.95
3220 3497 2.639839 CTCCTAATGATGGGATCCCGTT 59.360 50.000 26.78 16.33 35.39 4.44
3221 3498 2.158158 TCTCCTAATGATGGGATCCCGT 60.158 50.000 26.42 26.42 35.39 5.28
3222 3499 2.540383 TCTCCTAATGATGGGATCCCG 58.460 52.381 26.03 9.40 35.39 5.14
3223 3500 4.537688 TCATTCTCCTAATGATGGGATCCC 59.462 45.833 25.22 25.22 35.39 3.85
3224 3501 5.768980 TCATTCTCCTAATGATGGGATCC 57.231 43.478 1.92 1.92 35.39 3.36
3231 3508 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
3232 3509 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
3233 3510 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
3234 3511 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
3235 3512 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
3236 3513 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
3237 3514 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
3238 3515 4.774124 TCTTGTCCATCACATCATTCTCC 58.226 43.478 0.00 0.00 33.90 3.71
3239 3516 5.469421 GGATCTTGTCCATCACATCATTCTC 59.531 44.000 0.00 0.00 46.96 2.87
3240 3517 5.374921 GGATCTTGTCCATCACATCATTCT 58.625 41.667 0.00 0.00 46.96 2.40
3241 3518 5.686159 GGATCTTGTCCATCACATCATTC 57.314 43.478 0.00 0.00 46.96 2.67
3254 3531 4.429854 AAGCTAAGGGATGGATCTTGTC 57.570 45.455 0.00 0.00 0.00 3.18
3255 3532 4.202409 GCTAAGCTAAGGGATGGATCTTGT 60.202 45.833 0.00 0.00 0.00 3.16
3256 3533 4.202398 TGCTAAGCTAAGGGATGGATCTTG 60.202 45.833 0.00 0.00 0.00 3.02
3257 3534 3.976654 TGCTAAGCTAAGGGATGGATCTT 59.023 43.478 0.00 0.00 0.00 2.40
3258 3535 3.591789 TGCTAAGCTAAGGGATGGATCT 58.408 45.455 0.00 0.00 0.00 2.75
3259 3536 4.260170 CATGCTAAGCTAAGGGATGGATC 58.740 47.826 0.00 0.00 0.00 3.36
3260 3537 3.654806 ACATGCTAAGCTAAGGGATGGAT 59.345 43.478 15.34 0.00 34.02 3.41
3261 3538 3.048600 ACATGCTAAGCTAAGGGATGGA 58.951 45.455 15.34 0.00 34.02 3.41
3262 3539 3.498774 ACATGCTAAGCTAAGGGATGG 57.501 47.619 15.34 0.00 34.02 3.51
3263 3540 4.454678 TCAACATGCTAAGCTAAGGGATG 58.545 43.478 11.38 11.38 35.46 3.51
3264 3541 4.778213 TCAACATGCTAAGCTAAGGGAT 57.222 40.909 0.00 0.00 0.00 3.85
3265 3542 4.164030 TGATCAACATGCTAAGCTAAGGGA 59.836 41.667 0.00 0.00 0.00 4.20
3266 3543 4.454678 TGATCAACATGCTAAGCTAAGGG 58.545 43.478 0.00 0.00 0.00 3.95
3267 3544 6.261603 TGAATGATCAACATGCTAAGCTAAGG 59.738 38.462 0.00 0.00 39.39 2.69
3268 3545 7.012138 ACTGAATGATCAACATGCTAAGCTAAG 59.988 37.037 0.00 0.00 39.39 2.18
3269 3546 6.825213 ACTGAATGATCAACATGCTAAGCTAA 59.175 34.615 0.00 0.00 39.39 3.09
3270 3547 6.351711 ACTGAATGATCAACATGCTAAGCTA 58.648 36.000 0.00 0.00 39.39 3.32
3271 3548 5.191426 ACTGAATGATCAACATGCTAAGCT 58.809 37.500 0.00 0.00 39.39 3.74
3272 3549 5.496133 ACTGAATGATCAACATGCTAAGC 57.504 39.130 0.00 0.00 39.39 3.09
3275 3552 9.791820 CAATAAAACTGAATGATCAACATGCTA 57.208 29.630 0.00 0.00 39.39 3.49
3276 3553 7.277098 GCAATAAAACTGAATGATCAACATGCT 59.723 33.333 0.00 0.00 39.39 3.79
3277 3554 7.396419 GCAATAAAACTGAATGATCAACATGC 58.604 34.615 0.00 4.98 39.39 4.06
3278 3555 7.546316 TGGCAATAAAACTGAATGATCAACATG 59.454 33.333 0.00 0.00 39.39 3.21
3279 3556 7.613585 TGGCAATAAAACTGAATGATCAACAT 58.386 30.769 0.00 0.00 41.45 2.71
3280 3557 6.990798 TGGCAATAAAACTGAATGATCAACA 58.009 32.000 0.00 2.52 34.49 3.33
3281 3558 8.385111 CAATGGCAATAAAACTGAATGATCAAC 58.615 33.333 0.00 0.00 34.49 3.18
3282 3559 7.064847 GCAATGGCAATAAAACTGAATGATCAA 59.935 33.333 0.00 0.00 40.72 2.57
3283 3560 6.535865 GCAATGGCAATAAAACTGAATGATCA 59.464 34.615 0.00 0.00 40.72 2.92
3284 3561 6.759827 AGCAATGGCAATAAAACTGAATGATC 59.240 34.615 0.00 0.00 44.61 2.92
3285 3562 6.646267 AGCAATGGCAATAAAACTGAATGAT 58.354 32.000 0.00 0.00 44.61 2.45
3286 3563 6.040209 AGCAATGGCAATAAAACTGAATGA 57.960 33.333 0.00 0.00 44.61 2.57
3287 3564 6.730960 AAGCAATGGCAATAAAACTGAATG 57.269 33.333 0.00 0.00 44.61 2.67
3288 3565 7.163441 AGAAAGCAATGGCAATAAAACTGAAT 58.837 30.769 0.00 0.00 44.61 2.57
3289 3566 6.523840 AGAAAGCAATGGCAATAAAACTGAA 58.476 32.000 0.00 0.00 44.61 3.02
3290 3567 6.100404 AGAAAGCAATGGCAATAAAACTGA 57.900 33.333 0.00 0.00 44.61 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.