Multiple sequence alignment - TraesCS3A01G316500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G316500 chr3A 100.000 6390 0 0 1 6390 557021991 557015602 0.000000e+00 11801
1 TraesCS3A01G316500 chr3D 94.964 4051 145 19 1828 5838 428513699 428517730 0.000000e+00 6296
2 TraesCS3A01G316500 chr3D 88.967 1858 100 42 13 1825 428511855 428513652 0.000000e+00 2198
3 TraesCS3A01G316500 chr3D 85.096 208 18 9 6034 6234 428517752 428517953 3.910000e-47 200
4 TraesCS3A01G316500 chr3B 93.832 4053 135 42 1828 5838 560424309 560428288 0.000000e+00 5993
5 TraesCS3A01G316500 chr3B 89.582 1795 92 47 55 1825 560422539 560424262 0.000000e+00 2191
6 TraesCS3A01G316500 chr3B 91.304 92 5 2 6261 6351 560428604 560428693 8.700000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G316500 chr3A 557015602 557021991 6389 True 11801.000000 11801 100.000000 1 6390 1 chr3A.!!$R1 6389
1 TraesCS3A01G316500 chr3D 428511855 428517953 6098 False 2898.000000 6296 89.675667 13 6234 3 chr3D.!!$F1 6221
2 TraesCS3A01G316500 chr3B 560422539 560428693 6154 False 2768.666667 5993 91.572667 55 6351 3 chr3B.!!$F1 6296

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
522 534 0.032615 TGTGTCCCAAGCCAAAACCT 60.033 50.000 0.00 0.00 0.00 3.50 F
1177 1206 0.032815 TGATCCGTTGCTCGTGTTCA 59.967 50.000 0.00 2.43 37.94 3.18 F
1315 1353 0.245539 CTGTAGTTCCGCGGAAAGGA 59.754 55.000 40.13 25.21 35.75 3.36 F
1960 2052 1.321474 CTGCAAACCAGTGTCACCAT 58.679 50.000 0.00 0.00 36.79 3.55 F
3084 3182 1.530720 TGCATTACTTGTGAGTGCGTG 59.469 47.619 0.00 0.00 36.60 5.34 F
3778 3878 1.541588 GCTGTTTGGTCCACTGGAATC 59.458 52.381 0.00 0.00 31.38 2.52 F
4749 4850 1.407989 GCTGCACAAGAGGGAGCTTAT 60.408 52.381 0.00 0.00 45.05 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 1641 0.672401 TCCGAATGCCAAGAACGACC 60.672 55.000 0.00 0.0 0.00 4.79 R
3046 3144 0.382873 CACAGCAGCACACAACACAT 59.617 50.000 0.00 0.0 0.00 3.21 R
3089 3187 3.670625 ACCTATAAAACACTTGCGCTCA 58.329 40.909 9.73 0.0 0.00 4.26 R
3530 3628 1.403323 GCTAGTGCTGCCAGGAAATTC 59.597 52.381 0.00 0.0 36.03 2.17 R
4643 4744 3.136763 CCACTCTGCATAGTAGGCAATG 58.863 50.000 11.11 9.2 41.39 2.82 R
5159 5263 1.303888 CCATTGAGTGCTGTGGCCT 60.304 57.895 3.32 0.0 37.74 5.19 R
6013 6149 0.036388 GCCTGTTCGGATCAACTCCA 60.036 55.000 0.00 0.0 45.24 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 98 5.654603 ATCACGTGACTTTATGGTGTCTA 57.345 39.130 22.71 0.00 34.57 2.59
128 132 3.112580 CACAAACAAATTGGTCCACGAC 58.887 45.455 0.00 0.00 43.66 4.34
148 152 4.555906 CGACTCACAACCACCCAAAATTAC 60.556 45.833 0.00 0.00 0.00 1.89
205 209 8.581912 TCCTCCCAATATATAGGAAGATCTCAT 58.418 37.037 0.00 0.00 35.20 2.90
248 256 9.723601 ATACGAAGAGAAGTTATACCCTACTAG 57.276 37.037 0.00 0.00 0.00 2.57
251 259 9.553064 CGAAGAGAAGTTATACCCTACTAGTAA 57.447 37.037 3.76 0.00 0.00 2.24
351 363 0.829182 AAGACCCAAAGCCAAGGCAG 60.829 55.000 14.40 2.64 44.88 4.85
352 364 2.919328 ACCCAAAGCCAAGGCAGC 60.919 61.111 14.40 0.00 44.88 5.25
366 378 4.460382 CCAAGGCAGCAGAGAAGAAAAATA 59.540 41.667 0.00 0.00 0.00 1.40
367 379 5.047802 CCAAGGCAGCAGAGAAGAAAAATAA 60.048 40.000 0.00 0.00 0.00 1.40
368 380 6.350780 CCAAGGCAGCAGAGAAGAAAAATAAT 60.351 38.462 0.00 0.00 0.00 1.28
440 452 4.452733 CCGCCCGTCTGAACCCTC 62.453 72.222 0.00 0.00 0.00 4.30
522 534 0.032615 TGTGTCCCAAGCCAAAACCT 60.033 50.000 0.00 0.00 0.00 3.50
523 535 0.673985 GTGTCCCAAGCCAAAACCTC 59.326 55.000 0.00 0.00 0.00 3.85
604 616 4.812476 CGTCCGATCGCAGGCCAA 62.812 66.667 10.32 0.00 0.00 4.52
627 639 4.659874 CGTGCGAACGTGCCAACC 62.660 66.667 8.08 0.00 0.00 3.77
692 704 4.292178 CCCTCTCGCAGATCCGCC 62.292 72.222 0.00 0.00 33.89 6.13
712 724 2.290071 CCCCCGCGATATCCAGTATTTT 60.290 50.000 8.23 0.00 0.00 1.82
860 876 3.070018 CGCTGCTATAATTAGGCAAGCT 58.930 45.455 20.65 0.00 35.49 3.74
864 880 5.165961 TGCTATAATTAGGCAAGCTAGGG 57.834 43.478 11.79 0.00 34.28 3.53
948 964 0.976073 CCTCCTCCTCGCCTTGGTAA 60.976 60.000 0.00 0.00 0.00 2.85
952 968 1.536907 TCCTCGCCTTGGTAACCCA 60.537 57.895 0.00 0.00 39.65 4.51
1119 1146 4.824515 CGCCGTCTCCCCTCCTCT 62.825 72.222 0.00 0.00 0.00 3.69
1120 1147 2.835895 GCCGTCTCCCCTCCTCTC 60.836 72.222 0.00 0.00 0.00 3.20
1121 1148 2.123640 CCGTCTCCCCTCCTCTCC 60.124 72.222 0.00 0.00 0.00 3.71
1122 1149 2.123640 CGTCTCCCCTCCTCTCCC 60.124 72.222 0.00 0.00 0.00 4.30
1123 1150 2.284151 GTCTCCCCTCCTCTCCCC 59.716 72.222 0.00 0.00 0.00 4.81
1124 1151 2.133201 TCTCCCCTCCTCTCCCCT 59.867 66.667 0.00 0.00 0.00 4.79
1125 1152 2.015726 TCTCCCCTCCTCTCCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
1126 1153 2.018086 CTCCCCTCCTCTCCCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
1127 1154 2.015726 TCCCCTCCTCTCCCCTCTC 61.016 68.421 0.00 0.00 0.00 3.20
1128 1155 2.612251 CCCTCCTCTCCCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
1136 1163 0.556380 TCTCCCCTCTCCTCTCCCTT 60.556 60.000 0.00 0.00 0.00 3.95
1141 1168 1.045911 CCTCTCCTCTCCCTTTCCCG 61.046 65.000 0.00 0.00 0.00 5.14
1164 1193 1.672881 GCCTCCTCATGTTTTGATCCG 59.327 52.381 0.00 0.00 32.72 4.18
1177 1206 0.032815 TGATCCGTTGCTCGTGTTCA 59.967 50.000 0.00 2.43 37.94 3.18
1199 1228 1.009078 TGTTCGATCGATCCGTACGT 58.991 50.000 20.18 0.00 31.44 3.57
1261 1299 3.883997 TGCTGGTTCGGCAAAATTC 57.116 47.368 0.00 0.00 43.23 2.17
1315 1353 0.245539 CTGTAGTTCCGCGGAAAGGA 59.754 55.000 40.13 25.21 35.75 3.36
1326 1364 2.171725 GGAAAGGATCCGAACCGCG 61.172 63.158 5.98 0.00 38.79 6.46
1396 1438 1.470098 CAGCAACTCCATTACTGCACC 59.530 52.381 0.00 0.00 37.26 5.01
1473 1518 9.416794 CATCTATACATTGTAGAGCCAGTAAAG 57.583 37.037 12.58 0.00 32.15 1.85
1514 1559 2.053465 CGTGCGTTGTGTTCGTGG 60.053 61.111 0.00 0.00 0.00 4.94
1515 1560 2.326550 GTGCGTTGTGTTCGTGGG 59.673 61.111 0.00 0.00 0.00 4.61
1516 1561 3.578272 TGCGTTGTGTTCGTGGGC 61.578 61.111 0.00 0.00 0.00 5.36
1517 1562 4.659874 GCGTTGTGTTCGTGGGCG 62.660 66.667 0.00 0.00 39.92 6.13
1518 1563 3.266376 CGTTGTGTTCGTGGGCGT 61.266 61.111 0.00 0.00 39.49 5.68
1519 1564 2.326550 GTTGTGTTCGTGGGCGTG 59.673 61.111 0.00 0.00 39.49 5.34
1583 1628 2.095212 GTCTCCGGCCTGAAATTTCAAC 60.095 50.000 20.82 15.40 36.64 3.18
1588 1633 1.338105 GGCCTGAAATTTCAACCTGGC 60.338 52.381 28.43 28.43 41.47 4.85
1596 1641 6.690530 TGAAATTTCAACCTGGCTTCATTAG 58.309 36.000 18.45 0.00 33.55 1.73
1647 1694 9.706691 TGTGATTTTGAAGTAGAAACCTACTAG 57.293 33.333 5.65 0.00 44.38 2.57
1648 1695 9.708092 GTGATTTTGAAGTAGAAACCTACTAGT 57.292 33.333 0.00 0.00 44.38 2.57
1922 2014 5.404366 GTGTTGCACAATCTAGTTCGTAAGA 59.596 40.000 0.00 0.00 38.45 2.10
1952 2044 3.964031 TCCATTTTTACCTGCAAACCAGT 59.036 39.130 0.00 0.00 40.06 4.00
1960 2052 1.321474 CTGCAAACCAGTGTCACCAT 58.679 50.000 0.00 0.00 36.79 3.55
2086 2178 9.853555 TTATAAGCCACATAAATGTTTGAAGTG 57.146 29.630 0.00 0.00 39.39 3.16
2305 2397 8.948631 ATATCGACACTTCTTTGTATGATGTT 57.051 30.769 0.00 0.00 30.97 2.71
2502 2594 8.834004 TTGTATCTTCCTAGTATGTTGTACCT 57.166 34.615 0.00 0.00 0.00 3.08
2521 2613 9.523168 TTGTACCTTATAGGCAAGTAAAATTGT 57.477 29.630 0.00 0.00 39.63 2.71
2556 2648 9.950496 GACCAATACCATTGATATATCTGAAGT 57.050 33.333 13.79 8.72 0.00 3.01
2639 2735 5.645067 CAGAGTGCTACAAGATTGATCCAAA 59.355 40.000 0.00 0.00 0.00 3.28
2650 2746 6.906157 AGATTGATCCAAAAAGCAAGAAGA 57.094 33.333 0.00 0.00 0.00 2.87
2715 2811 4.157840 GGGGAGTTTGTTGTGGATTATGAC 59.842 45.833 0.00 0.00 0.00 3.06
2986 3084 5.748670 TGTACTGACAAACTATGCCCTTA 57.251 39.130 0.00 0.00 30.68 2.69
3046 3144 6.763135 GCTGTGTCCTTTCATCATGATAACTA 59.237 38.462 8.15 0.00 0.00 2.24
3084 3182 1.530720 TGCATTACTTGTGAGTGCGTG 59.469 47.619 0.00 0.00 36.60 5.34
3089 3187 1.893808 CTTGTGAGTGCGTGCCCTT 60.894 57.895 0.00 0.00 0.00 3.95
3368 3466 2.886523 TGTCAATGAGGACTTGGCAAAG 59.113 45.455 0.00 0.00 35.43 2.77
3461 3559 2.235898 AGACCCTTGAGACATCTTCAGC 59.764 50.000 0.00 0.00 0.00 4.26
3463 3561 2.289945 ACCCTTGAGACATCTTCAGCAC 60.290 50.000 0.00 0.00 0.00 4.40
3626 3726 4.441356 GCAGGTTTGACAAAAGAATCACCA 60.441 41.667 1.27 0.00 0.00 4.17
3725 3825 6.732896 AGACGATAACCATGAGTAATCCTT 57.267 37.500 0.00 0.00 0.00 3.36
3726 3826 7.125792 AGACGATAACCATGAGTAATCCTTT 57.874 36.000 0.00 0.00 0.00 3.11
3778 3878 1.541588 GCTGTTTGGTCCACTGGAATC 59.458 52.381 0.00 0.00 31.38 2.52
3831 3931 4.423625 AGCAAGTTGGTCAGGTATATCC 57.576 45.455 0.63 0.00 0.00 2.59
4009 4109 4.213482 AGTCAAAGAAAAGTGATGGTACGC 59.787 41.667 0.00 0.00 0.00 4.42
4194 4295 5.531287 TCTTGAGGTGGAAAAGTTTAGCTTC 59.469 40.000 0.00 0.00 36.17 3.86
4314 4415 7.581213 TTATACTTGATGATTTTCCGGCATT 57.419 32.000 0.00 0.00 0.00 3.56
4643 4744 5.869888 CCTGTGTATGTCTTAGGAACTCAAC 59.130 44.000 0.00 0.00 41.75 3.18
4653 4754 5.248477 TCTTAGGAACTCAACATTGCCTACT 59.752 40.000 0.00 0.00 41.75 2.57
4749 4850 1.407989 GCTGCACAAGAGGGAGCTTAT 60.408 52.381 0.00 0.00 45.05 1.73
4866 4967 7.178451 CCTTTCAGGTAATAAATTGGACTGGTT 59.822 37.037 0.00 0.00 0.00 3.67
4985 5086 3.861840 TGGCAGTTTAGCTATGTCACTC 58.138 45.455 0.00 0.00 34.17 3.51
4991 5092 5.807520 CAGTTTAGCTATGTCACTCATCGTT 59.192 40.000 0.00 0.00 37.91 3.85
5005 5106 4.697352 ACTCATCGTTCCAAATCAAAGAGG 59.303 41.667 0.00 0.00 0.00 3.69
5006 5107 4.651778 TCATCGTTCCAAATCAAAGAGGT 58.348 39.130 0.00 0.00 0.00 3.85
5159 5263 2.092646 GCCTGGTGATTGGGTACATGTA 60.093 50.000 0.08 0.08 0.00 2.29
5215 5319 2.443416 TGCAAGGTAAGTCTCTCGCTA 58.557 47.619 0.00 0.00 0.00 4.26
5275 5379 3.737559 TGGATGCTGGTTCTAATGGTT 57.262 42.857 0.00 0.00 0.00 3.67
5280 5384 7.350382 TGGATGCTGGTTCTAATGGTTATTTA 58.650 34.615 0.00 0.00 0.00 1.40
5281 5385 8.004215 TGGATGCTGGTTCTAATGGTTATTTAT 58.996 33.333 0.00 0.00 0.00 1.40
5282 5386 8.860088 GGATGCTGGTTCTAATGGTTATTTATT 58.140 33.333 0.00 0.00 0.00 1.40
5324 5428 1.443194 CAATTCAGCTGGCGCACAC 60.443 57.895 15.13 0.00 39.10 3.82
5400 5504 5.419542 CAGCAGCCTATAAACTGAACTACA 58.580 41.667 5.97 0.00 35.90 2.74
5419 5523 4.189639 ACAGATTGGGTAGTTCGTCTTC 57.810 45.455 0.00 0.00 0.00 2.87
5455 5559 3.305539 GGATCTGCTAGACTCTGATGCTG 60.306 52.174 0.00 0.00 31.19 4.41
5465 5569 2.172930 ACTCTGATGCTGCCTTCATCAT 59.827 45.455 11.40 0.00 46.23 2.45
5472 5576 1.888215 CTGCCTTCATCATACCGCAT 58.112 50.000 0.00 0.00 0.00 4.73
5510 5614 4.024556 CACAATTTTGAGAGCTCAGTTCGT 60.025 41.667 17.77 0.00 41.13 3.85
5550 5654 6.248210 GGTTTTGTTCGCAAATTTTGTTCTTG 59.752 34.615 10.65 0.00 45.34 3.02
5640 5769 3.631686 AGAGATGATCAGAGGACGACTTG 59.368 47.826 0.09 0.00 0.00 3.16
5642 5771 3.130164 AGATGATCAGAGGACGACTTGTG 59.870 47.826 0.09 0.00 0.00 3.33
5644 5773 2.229062 TGATCAGAGGACGACTTGTGTC 59.771 50.000 0.00 0.00 39.70 3.67
5670 5799 7.752239 CCATCTCATTCATTACGAATATTTGCC 59.248 37.037 2.34 0.00 42.70 4.52
5717 5847 8.750298 TCTAGATTCCTCTTTGTTAGAACGATT 58.250 33.333 0.00 0.00 32.66 3.34
5722 5852 7.979444 TCCTCTTTGTTAGAACGATTCATTT 57.021 32.000 0.00 0.00 30.91 2.32
5723 5853 7.806690 TCCTCTTTGTTAGAACGATTCATTTG 58.193 34.615 0.00 0.00 30.91 2.32
5724 5854 7.444183 TCCTCTTTGTTAGAACGATTCATTTGT 59.556 33.333 0.00 0.00 30.91 2.83
5725 5855 7.746475 CCTCTTTGTTAGAACGATTCATTTGTC 59.254 37.037 0.00 0.00 30.91 3.18
5728 5858 9.450807 CTTTGTTAGAACGATTCATTTGTCTTT 57.549 29.630 0.00 0.00 0.00 2.52
5730 5860 9.445786 TTGTTAGAACGATTCATTTGTCTTTTC 57.554 29.630 0.00 0.00 0.00 2.29
5788 5924 2.116125 GCCCTGGTTCTTGTGCCT 59.884 61.111 0.00 0.00 0.00 4.75
5794 5930 2.629617 CCTGGTTCTTGTGCCTGATTTT 59.370 45.455 0.00 0.00 0.00 1.82
5797 5933 5.047092 CCTGGTTCTTGTGCCTGATTTTATT 60.047 40.000 0.00 0.00 0.00 1.40
5800 5936 8.133024 TGGTTCTTGTGCCTGATTTTATTAAT 57.867 30.769 0.00 0.00 0.00 1.40
5832 5968 3.750130 GCAGAGCATAATCAATCATCGGT 59.250 43.478 0.00 0.00 0.00 4.69
5846 5982 2.918600 TCATCGGTTGATTACGACAACG 59.081 45.455 0.00 0.00 45.56 4.10
5847 5983 2.664568 CATCGGTTGATTACGACAACGT 59.335 45.455 0.00 0.00 45.56 3.99
5848 5984 3.241552 CATCGGTTGATTACGACAACGTC 60.242 47.826 0.00 0.00 45.56 4.34
5849 5985 5.658568 CATCGGTTGATTACGACAACGTCA 61.659 45.833 0.00 0.00 45.56 4.35
5858 5994 2.594529 CGACAACGTCAAATCCTTGG 57.405 50.000 0.00 0.00 33.01 3.61
5859 5995 1.399727 CGACAACGTCAAATCCTTGGC 60.400 52.381 0.00 0.00 33.58 4.52
5860 5996 1.880027 GACAACGTCAAATCCTTGGCT 59.120 47.619 0.00 0.00 34.84 4.75
5861 5997 1.880027 ACAACGTCAAATCCTTGGCTC 59.120 47.619 0.00 0.00 34.84 4.70
5862 5998 1.200020 CAACGTCAAATCCTTGGCTCC 59.800 52.381 0.00 0.00 34.84 4.70
5863 5999 0.400213 ACGTCAAATCCTTGGCTCCA 59.600 50.000 0.00 0.00 34.84 3.86
5864 6000 0.804989 CGTCAAATCCTTGGCTCCAC 59.195 55.000 0.00 0.00 34.84 4.02
5865 6001 1.611673 CGTCAAATCCTTGGCTCCACT 60.612 52.381 0.00 0.00 34.84 4.00
5866 6002 2.087646 GTCAAATCCTTGGCTCCACTC 58.912 52.381 0.00 0.00 34.15 3.51
5867 6003 1.004745 TCAAATCCTTGGCTCCACTCC 59.995 52.381 0.00 0.00 33.01 3.85
5868 6004 0.332972 AAATCCTTGGCTCCACTCCC 59.667 55.000 0.00 0.00 0.00 4.30
5869 6005 1.575447 AATCCTTGGCTCCACTCCCC 61.575 60.000 0.00 0.00 0.00 4.81
5870 6006 4.101448 CCTTGGCTCCACTCCCCG 62.101 72.222 0.00 0.00 0.00 5.73
5871 6007 4.785453 CTTGGCTCCACTCCCCGC 62.785 72.222 0.00 0.00 0.00 6.13
5876 6012 2.279073 CTCCACTCCCCGCTCCTA 59.721 66.667 0.00 0.00 0.00 2.94
5877 6013 1.830408 CTCCACTCCCCGCTCCTAG 60.830 68.421 0.00 0.00 0.00 3.02
5878 6014 2.840102 CCACTCCCCGCTCCTAGG 60.840 72.222 0.82 0.82 0.00 3.02
5879 6015 2.042843 CACTCCCCGCTCCTAGGT 60.043 66.667 9.08 0.00 0.00 3.08
5880 6016 1.686110 CACTCCCCGCTCCTAGGTT 60.686 63.158 9.08 0.00 0.00 3.50
5881 6017 1.686110 ACTCCCCGCTCCTAGGTTG 60.686 63.158 9.08 4.42 0.00 3.77
5882 6018 1.686110 CTCCCCGCTCCTAGGTTGT 60.686 63.158 9.08 0.00 0.00 3.32
5883 6019 1.961180 CTCCCCGCTCCTAGGTTGTG 61.961 65.000 9.08 9.59 0.00 3.33
5884 6020 2.584608 CCCGCTCCTAGGTTGTGG 59.415 66.667 21.87 21.87 0.00 4.17
5885 6021 1.987855 CCCGCTCCTAGGTTGTGGA 60.988 63.158 26.98 2.90 33.56 4.02
5886 6022 1.338136 CCCGCTCCTAGGTTGTGGAT 61.338 60.000 26.98 0.00 33.56 3.41
5887 6023 0.105039 CCGCTCCTAGGTTGTGGATC 59.895 60.000 23.41 0.00 33.56 3.36
5888 6024 0.105039 CGCTCCTAGGTTGTGGATCC 59.895 60.000 9.08 4.20 0.00 3.36
5889 6025 0.470341 GCTCCTAGGTTGTGGATCCC 59.530 60.000 9.90 0.85 0.00 3.85
5890 6026 1.132500 CTCCTAGGTTGTGGATCCCC 58.868 60.000 9.90 2.57 0.00 4.81
5891 6027 0.419865 TCCTAGGTTGTGGATCCCCA 59.580 55.000 9.90 0.00 40.95 4.96
5892 6028 1.010793 TCCTAGGTTGTGGATCCCCAT 59.989 52.381 9.90 0.00 45.68 4.00
5893 6029 1.143684 CCTAGGTTGTGGATCCCCATG 59.856 57.143 9.90 0.19 45.68 3.66
5894 6030 2.126882 CTAGGTTGTGGATCCCCATGA 58.873 52.381 9.90 0.00 45.68 3.07
5895 6031 0.625849 AGGTTGTGGATCCCCATGAC 59.374 55.000 9.90 0.00 45.68 3.06
5896 6032 0.625849 GGTTGTGGATCCCCATGACT 59.374 55.000 9.90 0.00 45.68 3.41
5897 6033 1.843851 GGTTGTGGATCCCCATGACTA 59.156 52.381 9.90 0.00 45.68 2.59
5898 6034 2.241176 GGTTGTGGATCCCCATGACTAA 59.759 50.000 9.90 0.00 45.68 2.24
5899 6035 3.117512 GGTTGTGGATCCCCATGACTAAT 60.118 47.826 9.90 0.00 45.68 1.73
5900 6036 4.137543 GTTGTGGATCCCCATGACTAATC 58.862 47.826 9.90 0.00 45.68 1.75
5901 6037 2.368548 TGTGGATCCCCATGACTAATCG 59.631 50.000 9.90 0.00 45.68 3.34
5902 6038 1.977854 TGGATCCCCATGACTAATCGG 59.022 52.381 9.90 0.00 37.58 4.18
5903 6039 1.279271 GGATCCCCATGACTAATCGGG 59.721 57.143 0.00 0.00 38.52 5.14
5904 6040 0.693049 ATCCCCATGACTAATCGGGC 59.307 55.000 0.00 0.00 37.36 6.13
5905 6041 1.301716 CCCCATGACTAATCGGGCG 60.302 63.158 0.00 0.00 37.36 6.13
5906 6042 1.445942 CCCATGACTAATCGGGCGT 59.554 57.895 0.00 0.00 0.00 5.68
5907 6043 0.179056 CCCATGACTAATCGGGCGTT 60.179 55.000 0.00 0.00 0.00 4.84
5908 6044 0.937304 CCATGACTAATCGGGCGTTG 59.063 55.000 0.00 0.00 0.00 4.10
5909 6045 1.472552 CCATGACTAATCGGGCGTTGA 60.473 52.381 0.00 0.00 0.00 3.18
5910 6046 1.593006 CATGACTAATCGGGCGTTGAC 59.407 52.381 0.00 0.00 0.00 3.18
5911 6047 0.604073 TGACTAATCGGGCGTTGACA 59.396 50.000 0.00 0.00 0.00 3.58
5912 6048 1.001068 TGACTAATCGGGCGTTGACAA 59.999 47.619 0.00 0.00 0.00 3.18
5913 6049 1.392510 GACTAATCGGGCGTTGACAAC 59.607 52.381 8.34 8.34 0.00 3.32
5914 6050 1.001633 ACTAATCGGGCGTTGACAACT 59.998 47.619 16.02 0.00 0.00 3.16
5915 6051 2.073816 CTAATCGGGCGTTGACAACTT 58.926 47.619 16.02 5.30 0.00 2.66
5916 6052 0.591170 AATCGGGCGTTGACAACTTG 59.409 50.000 16.02 3.04 0.00 3.16
5917 6053 0.534203 ATCGGGCGTTGACAACTTGT 60.534 50.000 16.02 0.00 0.00 3.16
5918 6054 0.745128 TCGGGCGTTGACAACTTGTT 60.745 50.000 16.02 0.00 0.00 2.83
5919 6055 0.099791 CGGGCGTTGACAACTTGTTT 59.900 50.000 16.02 0.00 0.00 2.83
5920 6056 1.555477 GGGCGTTGACAACTTGTTTG 58.445 50.000 16.02 0.94 41.49 2.93
5921 6057 1.133407 GGGCGTTGACAACTTGTTTGA 59.867 47.619 16.02 0.00 38.73 2.69
5922 6058 2.450160 GGCGTTGACAACTTGTTTGAG 58.550 47.619 16.02 0.00 38.73 3.02
5923 6059 2.096819 GGCGTTGACAACTTGTTTGAGA 59.903 45.455 16.02 0.00 38.73 3.27
5924 6060 3.426963 GGCGTTGACAACTTGTTTGAGAA 60.427 43.478 16.02 0.00 38.73 2.87
5925 6061 3.542310 GCGTTGACAACTTGTTTGAGAAC 59.458 43.478 16.02 0.00 38.73 3.01
5926 6062 4.717991 CGTTGACAACTTGTTTGAGAACA 58.282 39.130 16.02 0.00 43.73 3.18
5937 6073 1.305201 TTGAGAACAAACCGCACTCC 58.695 50.000 0.00 0.00 32.73 3.85
5938 6074 0.878523 TGAGAACAAACCGCACTCCG 60.879 55.000 0.00 0.00 0.00 4.63
5939 6075 0.878961 GAGAACAAACCGCACTCCGT 60.879 55.000 0.00 0.00 34.38 4.69
5940 6076 0.390124 AGAACAAACCGCACTCCGTA 59.610 50.000 0.00 0.00 34.38 4.02
5941 6077 0.509929 GAACAAACCGCACTCCGTAC 59.490 55.000 0.00 0.00 34.38 3.67
5942 6078 0.105408 AACAAACCGCACTCCGTACT 59.895 50.000 0.00 0.00 34.38 2.73
5943 6079 0.599204 ACAAACCGCACTCCGTACTG 60.599 55.000 0.00 0.00 34.38 2.74
5944 6080 0.319211 CAAACCGCACTCCGTACTGA 60.319 55.000 0.00 0.00 34.38 3.41
5945 6081 0.319297 AAACCGCACTCCGTACTGAC 60.319 55.000 0.00 0.00 34.38 3.51
5946 6082 2.151049 AACCGCACTCCGTACTGACC 62.151 60.000 0.00 0.00 34.38 4.02
5947 6083 2.341101 CCGCACTCCGTACTGACCT 61.341 63.158 0.00 0.00 34.38 3.85
5948 6084 1.136984 CGCACTCCGTACTGACCTC 59.863 63.158 0.00 0.00 0.00 3.85
5949 6085 1.511768 GCACTCCGTACTGACCTCC 59.488 63.158 0.00 0.00 0.00 4.30
5950 6086 1.946475 GCACTCCGTACTGACCTCCC 61.946 65.000 0.00 0.00 0.00 4.30
5951 6087 0.611062 CACTCCGTACTGACCTCCCA 60.611 60.000 0.00 0.00 0.00 4.37
5952 6088 0.611340 ACTCCGTACTGACCTCCCAC 60.611 60.000 0.00 0.00 0.00 4.61
5953 6089 1.654954 CTCCGTACTGACCTCCCACG 61.655 65.000 0.00 0.00 0.00 4.94
5954 6090 1.676635 CCGTACTGACCTCCCACGA 60.677 63.158 0.00 0.00 34.66 4.35
5955 6091 1.505353 CGTACTGACCTCCCACGAC 59.495 63.158 0.00 0.00 34.66 4.34
5956 6092 1.239296 CGTACTGACCTCCCACGACA 61.239 60.000 0.00 0.00 34.66 4.35
5957 6093 0.243095 GTACTGACCTCCCACGACAC 59.757 60.000 0.00 0.00 0.00 3.67
5958 6094 0.178984 TACTGACCTCCCACGACACA 60.179 55.000 0.00 0.00 0.00 3.72
5959 6095 0.832135 ACTGACCTCCCACGACACAT 60.832 55.000 0.00 0.00 0.00 3.21
5960 6096 0.108615 CTGACCTCCCACGACACATC 60.109 60.000 0.00 0.00 0.00 3.06
5961 6097 1.218316 GACCTCCCACGACACATCC 59.782 63.158 0.00 0.00 0.00 3.51
5962 6098 1.535444 ACCTCCCACGACACATCCA 60.535 57.895 0.00 0.00 0.00 3.41
5963 6099 1.125093 ACCTCCCACGACACATCCAA 61.125 55.000 0.00 0.00 0.00 3.53
5964 6100 0.391661 CCTCCCACGACACATCCAAG 60.392 60.000 0.00 0.00 0.00 3.61
5965 6101 1.003839 TCCCACGACACATCCAAGC 60.004 57.895 0.00 0.00 0.00 4.01
5966 6102 1.003355 CCCACGACACATCCAAGCT 60.003 57.895 0.00 0.00 0.00 3.74
5967 6103 1.300971 CCCACGACACATCCAAGCTG 61.301 60.000 0.00 0.00 0.00 4.24
5968 6104 1.300971 CCACGACACATCCAAGCTGG 61.301 60.000 0.00 0.00 39.43 4.85
5969 6105 0.603707 CACGACACATCCAAGCTGGT 60.604 55.000 0.00 0.00 39.03 4.00
5970 6106 0.108585 ACGACACATCCAAGCTGGTT 59.891 50.000 0.00 0.00 39.03 3.67
5971 6107 1.238439 CGACACATCCAAGCTGGTTT 58.762 50.000 0.00 0.00 39.03 3.27
5972 6108 2.224426 ACGACACATCCAAGCTGGTTTA 60.224 45.455 0.00 0.00 39.03 2.01
5973 6109 2.811431 CGACACATCCAAGCTGGTTTAA 59.189 45.455 0.00 0.00 39.03 1.52
5974 6110 3.364964 CGACACATCCAAGCTGGTTTAAC 60.365 47.826 0.00 0.00 39.03 2.01
5975 6111 3.561143 ACACATCCAAGCTGGTTTAACA 58.439 40.909 0.00 0.00 39.03 2.41
5976 6112 3.957497 ACACATCCAAGCTGGTTTAACAA 59.043 39.130 0.00 0.00 39.03 2.83
5977 6113 4.588528 ACACATCCAAGCTGGTTTAACAAT 59.411 37.500 0.00 0.00 39.03 2.71
5978 6114 4.925054 CACATCCAAGCTGGTTTAACAATG 59.075 41.667 0.00 0.00 39.03 2.82
5979 6115 4.021192 ACATCCAAGCTGGTTTAACAATGG 60.021 41.667 0.00 0.00 39.03 3.16
5980 6116 3.571590 TCCAAGCTGGTTTAACAATGGT 58.428 40.909 0.00 0.00 39.03 3.55
5981 6117 3.572255 TCCAAGCTGGTTTAACAATGGTC 59.428 43.478 0.00 0.00 39.03 4.02
5982 6118 3.320541 CCAAGCTGGTTTAACAATGGTCA 59.679 43.478 0.00 0.00 31.35 4.02
5983 6119 4.549458 CAAGCTGGTTTAACAATGGTCAG 58.451 43.478 0.00 0.00 0.00 3.51
5984 6120 3.832527 AGCTGGTTTAACAATGGTCAGT 58.167 40.909 0.00 0.00 0.00 3.41
5985 6121 3.821033 AGCTGGTTTAACAATGGTCAGTC 59.179 43.478 0.00 0.00 0.00 3.51
5986 6122 3.057526 GCTGGTTTAACAATGGTCAGTCC 60.058 47.826 0.00 0.00 0.00 3.85
5987 6123 4.398319 CTGGTTTAACAATGGTCAGTCCT 58.602 43.478 0.00 0.00 37.07 3.85
5988 6124 4.394729 TGGTTTAACAATGGTCAGTCCTC 58.605 43.478 0.00 0.00 37.07 3.71
5989 6125 4.104102 TGGTTTAACAATGGTCAGTCCTCT 59.896 41.667 0.00 0.00 37.07 3.69
5990 6126 4.455877 GGTTTAACAATGGTCAGTCCTCTG 59.544 45.833 0.00 0.00 42.54 3.35
5991 6127 2.867109 AACAATGGTCAGTCCTCTGG 57.133 50.000 0.00 0.00 41.59 3.86
5992 6128 2.030027 ACAATGGTCAGTCCTCTGGA 57.970 50.000 0.00 0.00 41.59 3.86
6004 6140 4.449638 TCTGGACCCAGAGCTGAG 57.550 61.111 14.37 0.00 46.80 3.35
6005 6141 1.466979 TCTGGACCCAGAGCTGAGT 59.533 57.895 14.37 0.00 46.80 3.41
6006 6142 0.178921 TCTGGACCCAGAGCTGAGTT 60.179 55.000 14.37 0.00 46.80 3.01
6007 6143 0.036577 CTGGACCCAGAGCTGAGTTG 60.037 60.000 10.47 0.00 46.30 3.16
6008 6144 0.764369 TGGACCCAGAGCTGAGTTGT 60.764 55.000 0.00 0.00 0.00 3.32
6009 6145 0.321122 GGACCCAGAGCTGAGTTGTG 60.321 60.000 0.00 0.00 0.00 3.33
6010 6146 0.321122 GACCCAGAGCTGAGTTGTGG 60.321 60.000 5.47 5.47 0.00 4.17
6011 6147 0.764369 ACCCAGAGCTGAGTTGTGGA 60.764 55.000 14.03 0.00 29.13 4.02
6012 6148 0.036577 CCCAGAGCTGAGTTGTGGAG 60.037 60.000 14.03 0.75 29.13 3.86
6013 6149 0.683973 CCAGAGCTGAGTTGTGGAGT 59.316 55.000 6.64 0.00 29.13 3.85
6014 6150 1.607509 CCAGAGCTGAGTTGTGGAGTG 60.608 57.143 6.64 0.00 29.13 3.51
6015 6151 0.683973 AGAGCTGAGTTGTGGAGTGG 59.316 55.000 0.00 0.00 0.00 4.00
6016 6152 0.681733 GAGCTGAGTTGTGGAGTGGA 59.318 55.000 0.00 0.00 0.00 4.02
6017 6153 0.683973 AGCTGAGTTGTGGAGTGGAG 59.316 55.000 0.00 0.00 0.00 3.86
6018 6154 0.394565 GCTGAGTTGTGGAGTGGAGT 59.605 55.000 0.00 0.00 0.00 3.85
6019 6155 1.202698 GCTGAGTTGTGGAGTGGAGTT 60.203 52.381 0.00 0.00 0.00 3.01
6020 6156 2.487934 CTGAGTTGTGGAGTGGAGTTG 58.512 52.381 0.00 0.00 0.00 3.16
6021 6157 2.103094 CTGAGTTGTGGAGTGGAGTTGA 59.897 50.000 0.00 0.00 0.00 3.18
6022 6158 2.705658 TGAGTTGTGGAGTGGAGTTGAT 59.294 45.455 0.00 0.00 0.00 2.57
6023 6159 3.244215 TGAGTTGTGGAGTGGAGTTGATC 60.244 47.826 0.00 0.00 0.00 2.92
6032 6168 2.768834 GGAGTTGATCCGAACAGGC 58.231 57.895 0.00 0.00 38.67 4.85
6033 6169 0.036388 GGAGTTGATCCGAACAGGCA 60.036 55.000 0.00 0.00 38.67 4.75
6034 6170 1.079503 GAGTTGATCCGAACAGGCAC 58.920 55.000 0.00 0.00 40.77 5.01
6035 6171 0.687354 AGTTGATCCGAACAGGCACT 59.313 50.000 0.00 0.00 40.77 4.40
6047 6183 4.260784 CGAACAGGCACTAATTAGCATTCC 60.261 45.833 12.54 8.28 36.02 3.01
6058 6194 5.841957 AATTAGCATTCCACTGATCAACC 57.158 39.130 0.00 0.00 0.00 3.77
6067 6203 2.093447 CCACTGATCAACCTCCTGTACC 60.093 54.545 0.00 0.00 0.00 3.34
6068 6204 2.567169 CACTGATCAACCTCCTGTACCA 59.433 50.000 0.00 0.00 0.00 3.25
6081 6217 2.542205 CCTGTACCAATGAATGCATGCG 60.542 50.000 14.09 0.00 34.26 4.73
6084 6220 0.457035 ACCAATGAATGCATGCGGTC 59.543 50.000 14.09 13.06 36.77 4.79
6085 6221 0.593008 CCAATGAATGCATGCGGTCG 60.593 55.000 14.09 0.53 34.26 4.79
6095 6231 0.789383 CATGCGGTCGTCTTTTTCGC 60.789 55.000 0.00 0.00 45.60 4.70
6099 6235 1.490258 GGTCGTCTTTTTCGCGGAC 59.510 57.895 6.13 4.09 0.00 4.79
6100 6236 1.490258 GTCGTCTTTTTCGCGGACC 59.510 57.895 6.13 0.00 0.00 4.46
6104 6240 1.957186 TCTTTTTCGCGGACCGTGG 60.957 57.895 26.23 13.63 37.97 4.94
6112 6250 3.667282 CGGACCGTGGACTCGTGT 61.667 66.667 5.48 0.00 0.00 4.49
6128 6268 0.037326 GTGTTCAGTGCCGATGGAGA 60.037 55.000 0.00 0.00 0.00 3.71
6129 6269 0.247460 TGTTCAGTGCCGATGGAGAG 59.753 55.000 0.00 0.00 0.00 3.20
6162 6302 1.682257 GTGGCCTCCTTGCTCTCTT 59.318 57.895 3.32 0.00 0.00 2.85
6166 6306 0.326264 GCCTCCTTGCTCTCTTGGAA 59.674 55.000 0.00 0.00 0.00 3.53
6167 6307 1.271597 GCCTCCTTGCTCTCTTGGAAA 60.272 52.381 0.00 0.00 0.00 3.13
6242 6403 3.567797 GCCTCGCGCTGTTCCATC 61.568 66.667 5.56 0.00 0.00 3.51
6244 6405 2.892425 CTCGCGCTGTTCCATCCC 60.892 66.667 5.56 0.00 0.00 3.85
6245 6406 4.812476 TCGCGCTGTTCCATCCCG 62.812 66.667 5.56 0.00 0.00 5.14
6249 6410 4.467084 GCTGTTCCATCCCGGCGA 62.467 66.667 9.30 0.00 33.14 5.54
6250 6411 2.511600 CTGTTCCATCCCGGCGAC 60.512 66.667 9.30 0.00 33.14 5.19
6320 6571 4.901868 TCGTTTTGTGGCCTAATTACTCT 58.098 39.130 3.32 0.00 0.00 3.24
6324 6575 1.138266 TGTGGCCTAATTACTCTCCGC 59.862 52.381 3.32 0.00 0.00 5.54
6338 6589 1.630244 CTCCGCAGAGAAAAGTGCCG 61.630 60.000 0.00 0.00 43.39 5.69
6339 6590 2.680913 CCGCAGAGAAAAGTGCCGG 61.681 63.158 0.00 0.00 36.24 6.13
6363 6614 8.699283 GGTAACGTGATTATAGAGACAAAAGT 57.301 34.615 0.00 0.00 0.00 2.66
6364 6615 9.793252 GGTAACGTGATTATAGAGACAAAAGTA 57.207 33.333 0.00 0.00 0.00 2.24
6367 6618 8.390854 ACGTGATTATAGAGACAAAAGTAACG 57.609 34.615 0.00 0.00 0.00 3.18
6368 6619 8.239314 ACGTGATTATAGAGACAAAAGTAACGA 58.761 33.333 0.00 0.00 0.00 3.85
6369 6620 9.069078 CGTGATTATAGAGACAAAAGTAACGAA 57.931 33.333 0.00 0.00 0.00 3.85
6371 6622 9.917129 TGATTATAGAGACAAAAGTAACGAACA 57.083 29.630 0.00 0.00 0.00 3.18
6373 6624 6.707599 ATAGAGACAAAAGTAACGAACAGC 57.292 37.500 0.00 0.00 0.00 4.40
6375 6626 3.450578 AGACAAAAGTAACGAACAGCGA 58.549 40.909 0.00 0.00 44.57 4.93
6376 6627 4.056050 AGACAAAAGTAACGAACAGCGAT 58.944 39.130 0.00 0.00 44.57 4.58
6377 6628 4.150098 AGACAAAAGTAACGAACAGCGATC 59.850 41.667 0.00 0.00 44.57 3.69
6378 6629 4.056050 ACAAAAGTAACGAACAGCGATCT 58.944 39.130 0.00 0.00 44.57 2.75
6379 6630 4.150098 ACAAAAGTAACGAACAGCGATCTC 59.850 41.667 0.00 0.00 44.57 2.75
6380 6631 3.570926 AAGTAACGAACAGCGATCTCA 57.429 42.857 0.00 0.00 44.57 3.27
6381 6632 3.784701 AGTAACGAACAGCGATCTCAT 57.215 42.857 0.00 0.00 44.57 2.90
6382 6633 4.111375 AGTAACGAACAGCGATCTCATT 57.889 40.909 0.00 0.00 44.57 2.57
6383 6634 5.244785 AGTAACGAACAGCGATCTCATTA 57.755 39.130 0.00 0.00 44.57 1.90
6384 6635 5.833082 AGTAACGAACAGCGATCTCATTAT 58.167 37.500 0.00 0.00 44.57 1.28
6385 6636 6.273825 AGTAACGAACAGCGATCTCATTATT 58.726 36.000 0.00 0.00 44.57 1.40
6386 6637 5.395325 AACGAACAGCGATCTCATTATTG 57.605 39.130 0.00 0.00 44.57 1.90
6387 6638 4.682787 ACGAACAGCGATCTCATTATTGA 58.317 39.130 0.00 0.00 44.57 2.57
6388 6639 5.292765 ACGAACAGCGATCTCATTATTGAT 58.707 37.500 0.00 0.00 44.57 2.57
6389 6640 6.447162 ACGAACAGCGATCTCATTATTGATA 58.553 36.000 0.00 0.00 44.57 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 55 6.649557 ACGTGATTTAAGTTAGAGAAACCCTG 59.350 38.462 0.00 0.00 39.03 4.45
102 106 2.224185 GGACCAATTTGTTTGTGGGACC 60.224 50.000 0.00 0.00 36.69 4.46
128 132 4.927978 TGTAATTTTGGGTGGTTGTGAG 57.072 40.909 0.00 0.00 0.00 3.51
180 184 8.795899 ATGAGATCTTCCTATATATTGGGAGG 57.204 38.462 18.27 13.31 30.34 4.30
268 276 6.105333 TGCGCAATATTCTTTTGCCTTAAAT 58.895 32.000 8.16 0.00 45.19 1.40
276 287 6.091169 ACATTCCTTTGCGCAATATTCTTTTG 59.909 34.615 25.64 15.56 0.00 2.44
292 303 4.038642 TCGCTTTTAAGGCAACATTCCTTT 59.961 37.500 0.00 0.00 40.87 3.11
295 306 3.569250 TCGCTTTTAAGGCAACATTCC 57.431 42.857 0.00 0.00 41.41 3.01
351 363 8.841300 CCTAGGGTTATTATTTTTCTTCTCTGC 58.159 37.037 0.00 0.00 0.00 4.26
352 364 8.841300 GCCTAGGGTTATTATTTTTCTTCTCTG 58.159 37.037 11.72 0.00 0.00 3.35
366 378 0.179045 CAGCAGCGCCTAGGGTTATT 60.179 55.000 11.72 0.00 0.00 1.40
367 379 1.338136 ACAGCAGCGCCTAGGGTTAT 61.338 55.000 11.72 0.00 0.00 1.89
368 380 0.685131 TACAGCAGCGCCTAGGGTTA 60.685 55.000 11.72 0.00 0.00 2.85
440 452 1.566018 GCGGGGAGATATTTTCGGCG 61.566 60.000 0.00 0.00 0.00 6.46
692 704 2.762535 AAATACTGGATATCGCGGGG 57.237 50.000 6.13 0.00 0.00 5.73
697 709 6.360329 GCACGGTTTAAAATACTGGATATCG 58.640 40.000 0.00 0.00 0.00 2.92
712 724 3.074281 CCTCAGGGGCACGGTTTA 58.926 61.111 0.00 0.00 0.00 2.01
740 752 3.554692 CGGTCAGCGGCGAATGAC 61.555 66.667 27.30 27.30 44.10 3.06
741 753 4.063967 ACGGTCAGCGGCGAATGA 62.064 61.111 12.98 11.53 0.00 2.57
760 772 1.154205 AGGAAATGAATCGCGCCTCG 61.154 55.000 0.00 0.00 40.15 4.63
977 995 1.658717 GCTGCGTCGATCTGCGTAT 60.659 57.895 0.00 0.00 41.80 3.06
978 996 2.277949 GCTGCGTCGATCTGCGTA 60.278 61.111 0.00 2.88 41.80 4.42
1112 1139 0.998945 AGAGGAGAGGGGAGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
1113 1140 0.478507 GAGAGGAGAGGGGAGAGGAG 59.521 65.000 0.00 0.00 0.00 3.69
1114 1141 0.996762 GGAGAGGAGAGGGGAGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1115 1142 1.541672 GGAGAGGAGAGGGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
1116 1143 0.998945 AGGGAGAGGAGAGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
1117 1144 0.556380 AAGGGAGAGGAGAGGGGAGA 60.556 60.000 0.00 0.00 0.00 3.71
1118 1145 0.341609 AAAGGGAGAGGAGAGGGGAG 59.658 60.000 0.00 0.00 0.00 4.30
1119 1146 0.340208 GAAAGGGAGAGGAGAGGGGA 59.660 60.000 0.00 0.00 0.00 4.81
1120 1147 0.692756 GGAAAGGGAGAGGAGAGGGG 60.693 65.000 0.00 0.00 0.00 4.79
1121 1148 0.692756 GGGAAAGGGAGAGGAGAGGG 60.693 65.000 0.00 0.00 0.00 4.30
1122 1149 1.045911 CGGGAAAGGGAGAGGAGAGG 61.046 65.000 0.00 0.00 0.00 3.69
1123 1150 1.681486 GCGGGAAAGGGAGAGGAGAG 61.681 65.000 0.00 0.00 0.00 3.20
1124 1151 1.686110 GCGGGAAAGGGAGAGGAGA 60.686 63.158 0.00 0.00 0.00 3.71
1125 1152 2.736826 GGCGGGAAAGGGAGAGGAG 61.737 68.421 0.00 0.00 0.00 3.69
1126 1153 2.687566 GGCGGGAAAGGGAGAGGA 60.688 66.667 0.00 0.00 0.00 3.71
1127 1154 4.162690 CGGCGGGAAAGGGAGAGG 62.163 72.222 0.00 0.00 0.00 3.69
1128 1155 4.840005 GCGGCGGGAAAGGGAGAG 62.840 72.222 9.78 0.00 0.00 3.20
1141 1168 0.960364 TCAAAACATGAGGAGGCGGC 60.960 55.000 0.00 0.00 33.04 6.53
1164 1193 2.705154 GAACAAGTGAACACGAGCAAC 58.295 47.619 0.00 0.00 36.20 4.17
1177 1206 2.538333 CGTACGGATCGATCGAACAAGT 60.538 50.000 23.50 22.53 0.00 3.16
1213 1250 3.846590 CACAGCTAGCGCGCACAG 61.847 66.667 35.10 28.56 42.32 3.66
1326 1364 2.427095 ACAAATCAGCCCGCTTAAATCC 59.573 45.455 0.00 0.00 0.00 3.01
1396 1438 3.129287 AGGGCAAAAGCGAAACATCTATG 59.871 43.478 0.00 0.00 0.00 2.23
1456 1501 7.630082 TCCATTTACTTTACTGGCTCTACAAT 58.370 34.615 0.00 0.00 0.00 2.71
1473 1518 5.560953 GCGGCAGACAATTAGATCCATTTAC 60.561 44.000 0.00 0.00 0.00 2.01
1514 1559 4.578928 ACAACATAATTAATCCCTCACGCC 59.421 41.667 0.00 0.00 0.00 5.68
1515 1560 5.751243 ACAACATAATTAATCCCTCACGC 57.249 39.130 0.00 0.00 0.00 5.34
1516 1561 8.433421 AGTTACAACATAATTAATCCCTCACG 57.567 34.615 0.00 0.00 0.00 4.35
1518 1563 8.682710 GCAAGTTACAACATAATTAATCCCTCA 58.317 33.333 0.00 0.00 0.00 3.86
1519 1564 8.682710 TGCAAGTTACAACATAATTAATCCCTC 58.317 33.333 0.00 0.00 0.00 4.30
1583 1628 2.093447 AGAACGACCTAATGAAGCCAGG 60.093 50.000 0.00 0.00 35.45 4.45
1588 1633 3.334691 TGCCAAGAACGACCTAATGAAG 58.665 45.455 0.00 0.00 0.00 3.02
1596 1641 0.672401 TCCGAATGCCAAGAACGACC 60.672 55.000 0.00 0.00 0.00 4.79
1681 1728 2.489938 TATTGTCTGTGTTGGCCTCC 57.510 50.000 3.32 0.00 0.00 4.30
1711 1758 8.803235 TGTAAAGACATGATCGCCTTATATACT 58.197 33.333 0.00 0.00 0.00 2.12
1814 1861 6.433441 ACTAACCATACTACTCTGCTACCTT 58.567 40.000 0.00 0.00 0.00 3.50
1922 2014 7.716799 TTGCAGGTAAAAATGGACAGATTAT 57.283 32.000 0.00 0.00 0.00 1.28
1928 2020 3.706594 TGGTTTGCAGGTAAAAATGGACA 59.293 39.130 0.00 0.00 0.00 4.02
2080 2172 9.202273 GTTCATAAACAAATAAATGCCACTTCA 57.798 29.630 0.00 0.00 35.36 3.02
2081 2173 9.202273 TGTTCATAAACAAATAAATGCCACTTC 57.798 29.630 0.00 0.00 42.34 3.01
2305 2397 1.190643 TGCGAGGTGATACCACATGA 58.809 50.000 0.00 0.00 44.93 3.07
2556 2648 3.085533 ACACAAGTTTACTGTGCCAACA 58.914 40.909 2.96 0.00 37.08 3.33
2565 2658 7.041098 CCTCTCTGCAAAATACACAAGTTTACT 60.041 37.037 0.00 0.00 0.00 2.24
2571 2664 4.083110 CCACCTCTCTGCAAAATACACAAG 60.083 45.833 0.00 0.00 0.00 3.16
2639 2735 2.867624 TGCAGTGGATCTTCTTGCTTT 58.132 42.857 11.30 0.00 0.00 3.51
2650 2746 2.885135 TCACCTGATTTGCAGTGGAT 57.115 45.000 2.14 0.00 43.33 3.41
2715 2811 4.213482 GCTCCAACAGTTACAACAAGGTAG 59.787 45.833 0.00 0.00 0.00 3.18
2864 2961 8.726988 GCACAGTTATTTGATCAAGGTTTAGTA 58.273 33.333 8.41 0.00 0.00 1.82
2925 3022 7.312154 TGTCAATTGGAGTGTATTGCATTAAC 58.688 34.615 5.42 0.00 32.96 2.01
2963 3060 4.634012 AGGGCATAGTTTGTCAGTACAA 57.366 40.909 0.00 0.00 43.85 2.41
2986 3084 3.841255 GCTGCTATCCTACTAAAGGGGAT 59.159 47.826 10.24 10.24 46.55 3.85
3017 3115 4.216902 TCATGATGAAAGGACACAGCAAAG 59.783 41.667 0.00 0.00 36.09 2.77
3046 3144 0.382873 CACAGCAGCACACAACACAT 59.617 50.000 0.00 0.00 0.00 3.21
3089 3187 3.670625 ACCTATAAAACACTTGCGCTCA 58.329 40.909 9.73 0.00 0.00 4.26
3121 3219 8.849168 ACAAAATGTATATATAGCTGCTTTGCA 58.151 29.630 7.79 0.00 36.92 4.08
3368 3466 9.601217 ACATACTTCTTTACATCAGGATACAAC 57.399 33.333 0.00 0.00 41.41 3.32
3530 3628 1.403323 GCTAGTGCTGCCAGGAAATTC 59.597 52.381 0.00 0.00 36.03 2.17
3588 3686 6.036953 GTCAAACCTGCATGAAACATGAAAAA 59.963 34.615 14.65 0.00 0.00 1.94
3626 3726 5.710099 TCTTGAACTTATCCTCGGCAAAATT 59.290 36.000 0.00 0.00 0.00 1.82
3725 3825 4.287067 AGGAACAGCAATCTCTCCAGTTAA 59.713 41.667 0.00 0.00 0.00 2.01
3726 3826 3.840666 AGGAACAGCAATCTCTCCAGTTA 59.159 43.478 0.00 0.00 0.00 2.24
3831 3931 2.036958 TTGTTATGGATGCAGACCGG 57.963 50.000 0.00 0.00 0.00 5.28
4009 4109 7.974243 TGATACTTCAAAATTGATCAATGCG 57.026 32.000 21.39 12.59 37.00 4.73
4105 4206 9.423061 CCAACAGAAAATATTCCCTAAAACTTG 57.577 33.333 0.00 0.00 36.12 3.16
4194 4295 7.659390 GGGACAGAAGAATGGTTATCATCTAAG 59.341 40.741 0.00 0.00 34.44 2.18
4265 4366 7.009179 ACATGTATACTAGTTGGCATAGCAT 57.991 36.000 0.00 0.00 0.00 3.79
4298 4399 4.107622 CACTGAAATGCCGGAAAATCATC 58.892 43.478 5.05 0.00 0.00 2.92
4314 4415 4.129380 CACAGATGTCAGAAACCACTGAA 58.871 43.478 0.00 0.00 46.34 3.02
4629 4730 4.640771 AGGCAATGTTGAGTTCCTAAGA 57.359 40.909 0.00 0.00 0.00 2.10
4643 4744 3.136763 CCACTCTGCATAGTAGGCAATG 58.863 50.000 11.11 9.20 41.39 2.82
4653 4754 3.689347 AGTTGATTTGCCACTCTGCATA 58.311 40.909 0.00 0.00 41.70 3.14
4749 4850 3.200605 TCCTATTGAAGCAATCTGCCAGA 59.799 43.478 0.00 0.00 46.52 3.86
4854 4955 7.907841 AGGTTTACTTTTAACCAGTCCAATT 57.092 32.000 7.44 0.00 46.01 2.32
4866 4967 7.550906 ACAGCAAAAATGCAAGGTTTACTTTTA 59.449 29.630 3.41 0.00 37.29 1.52
4985 5086 4.726416 CACCTCTTTGATTTGGAACGATG 58.274 43.478 0.00 0.00 0.00 3.84
4991 5092 3.507162 TCAGCACCTCTTTGATTTGGA 57.493 42.857 0.00 0.00 0.00 3.53
5005 5106 8.721478 TCTTCTATTTCTACAACAAATCAGCAC 58.279 33.333 0.00 0.00 0.00 4.40
5006 5107 8.846943 TCTTCTATTTCTACAACAAATCAGCA 57.153 30.769 0.00 0.00 0.00 4.41
5040 5144 9.453572 TTTGGGATGATCAATTATAGCTATGAC 57.546 33.333 16.77 2.88 0.00 3.06
5159 5263 1.303888 CCATTGAGTGCTGTGGCCT 60.304 57.895 3.32 0.00 37.74 5.19
5215 5319 5.184892 AGAAGGAACAAAGCATACTGGAT 57.815 39.130 0.00 0.00 0.00 3.41
5280 5384 8.244113 GCTTGCTGTATTTGGTAAAGAGTAAAT 58.756 33.333 0.00 0.00 0.00 1.40
5281 5385 7.229707 TGCTTGCTGTATTTGGTAAAGAGTAAA 59.770 33.333 0.00 0.00 0.00 2.01
5282 5386 6.712998 TGCTTGCTGTATTTGGTAAAGAGTAA 59.287 34.615 0.00 0.00 0.00 2.24
5283 5387 6.234920 TGCTTGCTGTATTTGGTAAAGAGTA 58.765 36.000 0.00 0.00 0.00 2.59
5284 5388 5.070001 TGCTTGCTGTATTTGGTAAAGAGT 58.930 37.500 0.00 0.00 0.00 3.24
5305 5409 2.505557 GTGCGCCAGCTGAATTGC 60.506 61.111 17.39 13.43 45.42 3.56
5324 5428 2.654749 TCAGTCACAACTAGCATCCG 57.345 50.000 0.00 0.00 33.25 4.18
5360 5464 1.339535 GCTGGAGTCCCTTCCAAAGAG 60.340 57.143 6.74 0.00 46.20 2.85
5400 5504 5.485209 AAAGAAGACGAACTACCCAATCT 57.515 39.130 0.00 0.00 0.00 2.40
5406 5510 3.135994 TGGCAAAAGAAGACGAACTACC 58.864 45.455 0.00 0.00 0.00 3.18
5419 5523 2.358267 GCAGATCCTCAGATGGCAAAAG 59.642 50.000 0.00 0.00 32.31 2.27
5455 5559 1.882912 TGATGCGGTATGATGAAGGC 58.117 50.000 0.00 0.00 0.00 4.35
5465 5569 1.999048 ACGAAACGAATGATGCGGTA 58.001 45.000 0.00 0.00 0.00 4.02
5472 5576 4.822036 AATTGTGGAACGAAACGAATGA 57.178 36.364 0.00 0.00 42.39 2.57
5510 5614 7.302524 CGAACAAAACCTTGCTAAGCTATTAA 58.697 34.615 0.00 0.00 35.84 1.40
5550 5654 7.506328 AAAAAGGATATAAACCGTATCTGGC 57.494 36.000 0.00 0.00 0.00 4.85
5640 5769 6.851222 ATTCGTAATGAATGAGATGGACAC 57.149 37.500 0.00 0.00 45.60 3.67
5642 5771 9.817365 CAAATATTCGTAATGAATGAGATGGAC 57.183 33.333 3.74 0.00 46.72 4.02
5644 5773 7.752239 GGCAAATATTCGTAATGAATGAGATGG 59.248 37.037 3.74 0.00 46.72 3.51
5670 5799 8.690884 TCTAGACTGTATTCTCATGAAAGAAGG 58.309 37.037 0.00 0.00 38.60 3.46
5722 5852 5.584251 GCCCAAAGTTTCATTTGAAAAGACA 59.416 36.000 7.28 0.00 44.58 3.41
5723 5853 5.584251 TGCCCAAAGTTTCATTTGAAAAGAC 59.416 36.000 7.28 0.00 44.58 3.01
5724 5854 5.584251 GTGCCCAAAGTTTCATTTGAAAAGA 59.416 36.000 7.28 0.00 44.58 2.52
5725 5855 5.502220 CGTGCCCAAAGTTTCATTTGAAAAG 60.502 40.000 7.28 0.00 44.58 2.27
5728 5858 3.452474 CGTGCCCAAAGTTTCATTTGAA 58.548 40.909 0.91 0.00 41.71 2.69
5730 5860 2.134346 CCGTGCCCAAAGTTTCATTTG 58.866 47.619 0.00 0.00 39.41 2.32
5788 5924 9.108284 TCTGCGAGAATCACATTAATAAAATCA 57.892 29.630 0.00 0.00 33.17 2.57
5794 5930 5.600696 TGCTCTGCGAGAATCACATTAATA 58.399 37.500 9.32 0.00 33.17 0.98
5797 5933 3.525268 TGCTCTGCGAGAATCACATTA 57.475 42.857 9.32 0.00 33.17 1.90
5800 5936 3.525268 TTATGCTCTGCGAGAATCACA 57.475 42.857 9.32 0.00 29.55 3.58
5839 5975 1.399727 GCCAAGGATTTGACGTTGTCG 60.400 52.381 0.00 0.00 43.34 4.35
5840 5976 1.880027 AGCCAAGGATTTGACGTTGTC 59.120 47.619 0.00 0.00 36.36 3.18
5841 5977 1.880027 GAGCCAAGGATTTGACGTTGT 59.120 47.619 0.00 0.00 36.36 3.32
5842 5978 1.200020 GGAGCCAAGGATTTGACGTTG 59.800 52.381 0.00 0.00 36.36 4.10
5843 5979 1.202879 TGGAGCCAAGGATTTGACGTT 60.203 47.619 0.00 0.00 36.36 3.99
5845 5981 0.804989 GTGGAGCCAAGGATTTGACG 59.195 55.000 0.00 0.00 36.36 4.35
5846 5982 2.087646 GAGTGGAGCCAAGGATTTGAC 58.912 52.381 0.00 0.00 36.36 3.18
5847 5983 1.004745 GGAGTGGAGCCAAGGATTTGA 59.995 52.381 0.00 0.00 36.36 2.69
5848 5984 1.467920 GGAGTGGAGCCAAGGATTTG 58.532 55.000 0.00 0.00 0.00 2.32
5849 5985 0.332972 GGGAGTGGAGCCAAGGATTT 59.667 55.000 0.00 0.00 0.00 2.17
5853 5989 4.101448 CGGGGAGTGGAGCCAAGG 62.101 72.222 0.00 0.00 0.00 3.61
5859 5995 1.830408 CTAGGAGCGGGGAGTGGAG 60.830 68.421 0.00 0.00 0.00 3.86
5860 5996 2.279073 CTAGGAGCGGGGAGTGGA 59.721 66.667 0.00 0.00 0.00 4.02
5861 5997 2.840102 CCTAGGAGCGGGGAGTGG 60.840 72.222 1.05 0.00 0.00 4.00
5862 5998 1.686110 AACCTAGGAGCGGGGAGTG 60.686 63.158 17.98 0.00 0.00 3.51
5863 5999 1.686110 CAACCTAGGAGCGGGGAGT 60.686 63.158 17.98 0.00 0.00 3.85
5864 6000 1.686110 ACAACCTAGGAGCGGGGAG 60.686 63.158 17.98 0.00 0.00 4.30
5865 6001 1.987855 CACAACCTAGGAGCGGGGA 60.988 63.158 17.98 0.00 0.00 4.81
5866 6002 2.584608 CACAACCTAGGAGCGGGG 59.415 66.667 17.98 0.00 0.00 5.73
5867 6003 1.338136 ATCCACAACCTAGGAGCGGG 61.338 60.000 17.98 11.60 37.34 6.13
5868 6004 0.105039 GATCCACAACCTAGGAGCGG 59.895 60.000 17.98 11.04 37.34 5.52
5869 6005 0.105039 GGATCCACAACCTAGGAGCG 59.895 60.000 17.98 5.51 41.13 5.03
5870 6006 0.470341 GGGATCCACAACCTAGGAGC 59.530 60.000 17.98 0.00 39.54 4.70
5871 6007 1.132500 GGGGATCCACAACCTAGGAG 58.868 60.000 17.98 10.18 37.34 3.69
5872 6008 0.419865 TGGGGATCCACAACCTAGGA 59.580 55.000 16.35 0.00 38.32 2.94
5873 6009 3.021356 TGGGGATCCACAACCTAGG 57.979 57.895 16.35 7.41 38.32 3.02
5883 6019 2.770164 CCGATTAGTCATGGGGATCC 57.230 55.000 1.92 1.92 0.00 3.36
5888 6024 0.179056 AACGCCCGATTAGTCATGGG 60.179 55.000 0.00 0.00 44.88 4.00
5889 6025 0.937304 CAACGCCCGATTAGTCATGG 59.063 55.000 0.00 0.00 0.00 3.66
5890 6026 1.593006 GTCAACGCCCGATTAGTCATG 59.407 52.381 0.00 0.00 0.00 3.07
5891 6027 1.206132 TGTCAACGCCCGATTAGTCAT 59.794 47.619 0.00 0.00 0.00 3.06
5892 6028 0.604073 TGTCAACGCCCGATTAGTCA 59.396 50.000 0.00 0.00 0.00 3.41
5893 6029 1.392510 GTTGTCAACGCCCGATTAGTC 59.607 52.381 0.00 0.00 0.00 2.59
5894 6030 1.001633 AGTTGTCAACGCCCGATTAGT 59.998 47.619 10.02 0.00 36.23 2.24
5895 6031 1.722011 AGTTGTCAACGCCCGATTAG 58.278 50.000 10.02 0.00 36.23 1.73
5896 6032 1.801771 CAAGTTGTCAACGCCCGATTA 59.198 47.619 10.02 0.00 36.23 1.75
5897 6033 0.591170 CAAGTTGTCAACGCCCGATT 59.409 50.000 10.02 0.00 36.23 3.34
5898 6034 0.534203 ACAAGTTGTCAACGCCCGAT 60.534 50.000 10.02 0.00 36.23 4.18
5899 6035 0.745128 AACAAGTTGTCAACGCCCGA 60.745 50.000 9.40 0.00 36.23 5.14
5900 6036 0.099791 AAACAAGTTGTCAACGCCCG 59.900 50.000 9.40 3.16 36.23 6.13
5901 6037 1.133407 TCAAACAAGTTGTCAACGCCC 59.867 47.619 9.40 0.00 38.47 6.13
5902 6038 2.096819 TCTCAAACAAGTTGTCAACGCC 59.903 45.455 9.40 0.00 38.47 5.68
5903 6039 3.398954 TCTCAAACAAGTTGTCAACGC 57.601 42.857 9.40 0.00 38.47 4.84
5904 6040 4.717991 TGTTCTCAAACAAGTTGTCAACG 58.282 39.130 9.40 0.00 42.34 4.10
5917 6053 1.673920 GGAGTGCGGTTTGTTCTCAAA 59.326 47.619 0.00 0.00 40.64 2.69
5918 6054 1.305201 GGAGTGCGGTTTGTTCTCAA 58.695 50.000 0.00 0.00 0.00 3.02
5919 6055 0.878523 CGGAGTGCGGTTTGTTCTCA 60.879 55.000 0.00 0.00 0.00 3.27
5920 6056 0.878961 ACGGAGTGCGGTTTGTTCTC 60.879 55.000 9.43 0.00 42.51 2.87
5921 6057 0.390124 TACGGAGTGCGGTTTGTTCT 59.610 50.000 9.43 0.00 45.73 3.01
5922 6058 0.509929 GTACGGAGTGCGGTTTGTTC 59.490 55.000 9.43 0.00 45.73 3.18
5923 6059 2.608640 GTACGGAGTGCGGTTTGTT 58.391 52.632 9.43 0.00 45.73 2.83
5924 6060 4.348857 GTACGGAGTGCGGTTTGT 57.651 55.556 9.43 0.00 45.73 2.83
5931 6067 1.511768 GGAGGTCAGTACGGAGTGC 59.488 63.158 0.00 0.00 45.73 4.40
5932 6068 0.611062 TGGGAGGTCAGTACGGAGTG 60.611 60.000 0.00 0.00 45.73 3.51
5934 6070 1.654954 CGTGGGAGGTCAGTACGGAG 61.655 65.000 0.00 0.00 0.00 4.63
5935 6071 1.676635 CGTGGGAGGTCAGTACGGA 60.677 63.158 0.00 0.00 0.00 4.69
5936 6072 1.676635 TCGTGGGAGGTCAGTACGG 60.677 63.158 0.00 0.00 35.63 4.02
5937 6073 1.239296 TGTCGTGGGAGGTCAGTACG 61.239 60.000 0.00 0.00 36.20 3.67
5938 6074 0.243095 GTGTCGTGGGAGGTCAGTAC 59.757 60.000 0.00 0.00 0.00 2.73
5939 6075 0.178984 TGTGTCGTGGGAGGTCAGTA 60.179 55.000 0.00 0.00 0.00 2.74
5940 6076 0.832135 ATGTGTCGTGGGAGGTCAGT 60.832 55.000 0.00 0.00 0.00 3.41
5941 6077 0.108615 GATGTGTCGTGGGAGGTCAG 60.109 60.000 0.00 0.00 0.00 3.51
5942 6078 1.541310 GGATGTGTCGTGGGAGGTCA 61.541 60.000 0.00 0.00 0.00 4.02
5943 6079 1.218316 GGATGTGTCGTGGGAGGTC 59.782 63.158 0.00 0.00 0.00 3.85
5944 6080 1.125093 TTGGATGTGTCGTGGGAGGT 61.125 55.000 0.00 0.00 0.00 3.85
5945 6081 0.391661 CTTGGATGTGTCGTGGGAGG 60.392 60.000 0.00 0.00 0.00 4.30
5946 6082 1.021390 GCTTGGATGTGTCGTGGGAG 61.021 60.000 0.00 0.00 0.00 4.30
5947 6083 1.003839 GCTTGGATGTGTCGTGGGA 60.004 57.895 0.00 0.00 0.00 4.37
5948 6084 1.003355 AGCTTGGATGTGTCGTGGG 60.003 57.895 0.00 0.00 0.00 4.61
5949 6085 1.300971 CCAGCTTGGATGTGTCGTGG 61.301 60.000 0.00 0.00 40.96 4.94
5950 6086 0.603707 ACCAGCTTGGATGTGTCGTG 60.604 55.000 8.91 0.00 40.96 4.35
5951 6087 0.108585 AACCAGCTTGGATGTGTCGT 59.891 50.000 8.91 0.00 40.96 4.34
5952 6088 1.238439 AAACCAGCTTGGATGTGTCG 58.762 50.000 8.91 0.00 40.96 4.35
5953 6089 3.568007 TGTTAAACCAGCTTGGATGTGTC 59.432 43.478 8.91 0.00 40.96 3.67
5954 6090 3.561143 TGTTAAACCAGCTTGGATGTGT 58.439 40.909 8.91 0.00 40.96 3.72
5955 6091 4.582701 TTGTTAAACCAGCTTGGATGTG 57.417 40.909 8.91 0.00 40.96 3.21
5956 6092 4.021192 CCATTGTTAAACCAGCTTGGATGT 60.021 41.667 8.91 0.00 40.96 3.06
5957 6093 4.021192 ACCATTGTTAAACCAGCTTGGATG 60.021 41.667 8.91 1.54 40.96 3.51
5958 6094 4.159557 ACCATTGTTAAACCAGCTTGGAT 58.840 39.130 8.91 0.00 40.96 3.41
5959 6095 3.571590 ACCATTGTTAAACCAGCTTGGA 58.428 40.909 8.91 0.00 40.96 3.53
5960 6096 3.320541 TGACCATTGTTAAACCAGCTTGG 59.679 43.478 1.16 1.16 45.02 3.61
5961 6097 4.037923 ACTGACCATTGTTAAACCAGCTTG 59.962 41.667 0.00 0.00 0.00 4.01
5962 6098 4.215109 ACTGACCATTGTTAAACCAGCTT 58.785 39.130 0.00 0.00 0.00 3.74
5963 6099 3.821033 GACTGACCATTGTTAAACCAGCT 59.179 43.478 0.00 0.00 0.00 4.24
5964 6100 3.057526 GGACTGACCATTGTTAAACCAGC 60.058 47.826 0.00 0.00 38.79 4.85
5965 6101 4.398319 AGGACTGACCATTGTTAAACCAG 58.602 43.478 0.00 0.00 42.04 4.00
5966 6102 4.104102 AGAGGACTGACCATTGTTAAACCA 59.896 41.667 0.00 0.00 42.04 3.67
5967 6103 4.455877 CAGAGGACTGACCATTGTTAAACC 59.544 45.833 0.00 0.00 46.03 3.27
5968 6104 4.455877 CCAGAGGACTGACCATTGTTAAAC 59.544 45.833 0.00 0.00 46.03 2.01
5969 6105 4.349636 TCCAGAGGACTGACCATTGTTAAA 59.650 41.667 0.00 0.00 46.03 1.52
5970 6106 3.907474 TCCAGAGGACTGACCATTGTTAA 59.093 43.478 0.00 0.00 46.03 2.01
5971 6107 3.516586 TCCAGAGGACTGACCATTGTTA 58.483 45.455 0.00 0.00 46.03 2.41
5972 6108 2.338809 TCCAGAGGACTGACCATTGTT 58.661 47.619 0.00 0.00 46.03 2.83
5973 6109 2.030027 TCCAGAGGACTGACCATTGT 57.970 50.000 0.00 0.00 46.03 2.71
5987 6123 0.178921 AACTCAGCTCTGGGTCCAGA 60.179 55.000 17.70 17.70 44.93 3.86
5988 6124 0.036577 CAACTCAGCTCTGGGTCCAG 60.037 60.000 10.62 10.62 44.93 3.86
5989 6125 0.764369 ACAACTCAGCTCTGGGTCCA 60.764 55.000 2.48 0.00 44.93 4.02
5990 6126 0.321122 CACAACTCAGCTCTGGGTCC 60.321 60.000 2.48 0.00 44.93 4.46
5991 6127 0.321122 CCACAACTCAGCTCTGGGTC 60.321 60.000 2.48 0.00 44.93 4.46
5993 6129 0.036577 CTCCACAACTCAGCTCTGGG 60.037 60.000 0.00 0.00 37.03 4.45
5994 6130 0.683973 ACTCCACAACTCAGCTCTGG 59.316 55.000 0.00 0.00 0.00 3.86
5995 6131 1.607509 CCACTCCACAACTCAGCTCTG 60.608 57.143 0.00 0.00 0.00 3.35
5996 6132 0.683973 CCACTCCACAACTCAGCTCT 59.316 55.000 0.00 0.00 0.00 4.09
5997 6133 0.681733 TCCACTCCACAACTCAGCTC 59.318 55.000 0.00 0.00 0.00 4.09
5998 6134 0.683973 CTCCACTCCACAACTCAGCT 59.316 55.000 0.00 0.00 0.00 4.24
5999 6135 0.394565 ACTCCACTCCACAACTCAGC 59.605 55.000 0.00 0.00 0.00 4.26
6000 6136 2.103094 TCAACTCCACTCCACAACTCAG 59.897 50.000 0.00 0.00 0.00 3.35
6001 6137 2.115427 TCAACTCCACTCCACAACTCA 58.885 47.619 0.00 0.00 0.00 3.41
6002 6138 2.910688 TCAACTCCACTCCACAACTC 57.089 50.000 0.00 0.00 0.00 3.01
6003 6139 2.039084 GGATCAACTCCACTCCACAACT 59.961 50.000 0.00 0.00 44.26 3.16
6004 6140 2.427506 GGATCAACTCCACTCCACAAC 58.572 52.381 0.00 0.00 44.26 3.32
6005 6141 1.001974 CGGATCAACTCCACTCCACAA 59.998 52.381 0.00 0.00 45.24 3.33
6006 6142 0.608130 CGGATCAACTCCACTCCACA 59.392 55.000 0.00 0.00 45.24 4.17
6007 6143 0.895530 TCGGATCAACTCCACTCCAC 59.104 55.000 0.00 0.00 45.24 4.02
6008 6144 1.275291 GTTCGGATCAACTCCACTCCA 59.725 52.381 0.00 0.00 45.24 3.86
6009 6145 1.275291 TGTTCGGATCAACTCCACTCC 59.725 52.381 0.00 0.00 45.24 3.85
6010 6146 2.611518 CTGTTCGGATCAACTCCACTC 58.388 52.381 0.00 0.00 45.24 3.51
6011 6147 1.276421 CCTGTTCGGATCAACTCCACT 59.724 52.381 0.00 0.00 45.24 4.00
6012 6148 1.726853 CCTGTTCGGATCAACTCCAC 58.273 55.000 0.00 0.00 45.24 4.02
6013 6149 0.036388 GCCTGTTCGGATCAACTCCA 60.036 55.000 0.00 0.00 45.24 3.86
6014 6150 0.036388 TGCCTGTTCGGATCAACTCC 60.036 55.000 0.00 0.00 41.07 3.85
6015 6151 1.079503 GTGCCTGTTCGGATCAACTC 58.920 55.000 0.00 0.00 33.16 3.01
6016 6152 0.687354 AGTGCCTGTTCGGATCAACT 59.313 50.000 0.00 0.00 33.16 3.16
6017 6153 2.380084 TAGTGCCTGTTCGGATCAAC 57.620 50.000 0.00 0.00 33.16 3.18
6018 6154 3.627395 ATTAGTGCCTGTTCGGATCAA 57.373 42.857 0.00 0.00 33.16 2.57
6019 6155 3.627395 AATTAGTGCCTGTTCGGATCA 57.373 42.857 0.00 0.00 33.16 2.92
6020 6156 3.495001 GCTAATTAGTGCCTGTTCGGATC 59.505 47.826 13.91 0.00 33.16 3.36
6021 6157 3.118408 TGCTAATTAGTGCCTGTTCGGAT 60.118 43.478 13.91 0.00 33.16 4.18
6022 6158 2.235155 TGCTAATTAGTGCCTGTTCGGA 59.765 45.455 13.91 0.00 33.16 4.55
6023 6159 2.627945 TGCTAATTAGTGCCTGTTCGG 58.372 47.619 13.91 0.00 0.00 4.30
6024 6160 4.260784 GGAATGCTAATTAGTGCCTGTTCG 60.261 45.833 13.91 0.00 0.00 3.95
6025 6161 4.640201 TGGAATGCTAATTAGTGCCTGTTC 59.360 41.667 13.91 8.87 0.00 3.18
6026 6162 4.399303 GTGGAATGCTAATTAGTGCCTGTT 59.601 41.667 13.91 1.24 0.00 3.16
6027 6163 3.947834 GTGGAATGCTAATTAGTGCCTGT 59.052 43.478 13.91 0.00 0.00 4.00
6028 6164 4.036027 CAGTGGAATGCTAATTAGTGCCTG 59.964 45.833 13.91 7.05 0.00 4.85
6029 6165 4.080356 TCAGTGGAATGCTAATTAGTGCCT 60.080 41.667 13.91 0.00 0.00 4.75
6030 6166 4.199310 TCAGTGGAATGCTAATTAGTGCC 58.801 43.478 13.91 10.22 0.00 5.01
6031 6167 5.528690 TGATCAGTGGAATGCTAATTAGTGC 59.471 40.000 13.91 2.19 0.00 4.40
6032 6168 7.412853 GTTGATCAGTGGAATGCTAATTAGTG 58.587 38.462 13.91 2.24 0.00 2.74
6033 6169 6.543831 GGTTGATCAGTGGAATGCTAATTAGT 59.456 38.462 13.91 0.00 0.00 2.24
6034 6170 6.769822 AGGTTGATCAGTGGAATGCTAATTAG 59.230 38.462 8.20 8.20 0.00 1.73
6035 6171 6.662755 AGGTTGATCAGTGGAATGCTAATTA 58.337 36.000 0.00 0.00 0.00 1.40
6047 6183 2.567169 TGGTACAGGAGGTTGATCAGTG 59.433 50.000 0.00 0.00 0.00 3.66
6058 6194 3.243301 GCATGCATTCATTGGTACAGGAG 60.243 47.826 14.21 0.00 42.39 3.69
6067 6203 0.099259 ACGACCGCATGCATTCATTG 59.901 50.000 19.57 4.08 0.00 2.82
6068 6204 0.378257 GACGACCGCATGCATTCATT 59.622 50.000 19.57 2.58 0.00 2.57
6081 6217 1.490258 GTCCGCGAAAAAGACGACC 59.510 57.895 8.23 0.00 0.00 4.79
6084 6220 2.305127 ACGGTCCGCGAAAAAGACG 61.305 57.895 12.28 4.66 0.00 4.18
6085 6221 1.203313 CACGGTCCGCGAAAAAGAC 59.797 57.895 12.28 5.68 0.00 3.01
6095 6231 3.203546 AACACGAGTCCACGGTCCG 62.204 63.158 10.48 10.48 37.61 4.79
6099 6235 0.939577 CACTGAACACGAGTCCACGG 60.940 60.000 0.00 0.00 37.61 4.94
6100 6236 1.548973 GCACTGAACACGAGTCCACG 61.549 60.000 0.00 0.00 39.31 4.94
6104 6240 0.388649 ATCGGCACTGAACACGAGTC 60.389 55.000 0.00 0.00 38.85 3.36
6112 6250 1.900351 CCTCTCCATCGGCACTGAA 59.100 57.895 0.00 0.00 0.00 3.02
6128 6268 2.035940 ACCCGAGAAGAGTCGCCT 59.964 61.111 0.00 0.00 38.69 5.52
6129 6269 2.182030 CACCCGAGAAGAGTCGCC 59.818 66.667 0.00 0.00 38.69 5.54
6132 6272 1.950973 GAGGCCACCCGAGAAGAGTC 61.951 65.000 5.01 0.00 35.76 3.36
6143 6283 1.846712 AAGAGAGCAAGGAGGCCACC 61.847 60.000 11.96 11.96 0.00 4.61
6162 6302 1.373748 GCTGTACGCGACCTTTCCA 60.374 57.895 15.93 0.00 0.00 3.53
6320 6571 1.667830 CGGCACTTTTCTCTGCGGA 60.668 57.895 0.00 0.00 36.17 5.54
6324 6575 1.459592 CGTTACCGGCACTTTTCTCTG 59.540 52.381 0.00 0.00 0.00 3.35
6331 6582 2.747396 TAATCACGTTACCGGCACTT 57.253 45.000 0.00 0.00 38.78 3.16
6332 6583 2.973694 ATAATCACGTTACCGGCACT 57.026 45.000 0.00 0.00 38.78 4.40
6338 6589 8.699283 ACTTTTGTCTCTATAATCACGTTACC 57.301 34.615 0.00 0.00 0.00 2.85
6347 6598 8.870879 GCTGTTCGTTACTTTTGTCTCTATAAT 58.129 33.333 0.00 0.00 0.00 1.28
6351 6602 4.678287 CGCTGTTCGTTACTTTTGTCTCTA 59.322 41.667 0.00 0.00 0.00 2.43
6352 6603 3.489785 CGCTGTTCGTTACTTTTGTCTCT 59.510 43.478 0.00 0.00 0.00 3.10
6353 6604 3.488310 TCGCTGTTCGTTACTTTTGTCTC 59.512 43.478 0.00 0.00 39.67 3.36
6354 6605 3.450578 TCGCTGTTCGTTACTTTTGTCT 58.549 40.909 0.00 0.00 39.67 3.41
6355 6606 3.847037 TCGCTGTTCGTTACTTTTGTC 57.153 42.857 0.00 0.00 39.67 3.18
6356 6607 4.056050 AGATCGCTGTTCGTTACTTTTGT 58.944 39.130 0.00 0.00 39.67 2.83
6357 6608 4.149922 TGAGATCGCTGTTCGTTACTTTTG 59.850 41.667 0.00 0.00 39.67 2.44
6358 6609 4.304110 TGAGATCGCTGTTCGTTACTTTT 58.696 39.130 0.00 0.00 39.67 2.27
6359 6610 3.909430 TGAGATCGCTGTTCGTTACTTT 58.091 40.909 0.00 0.00 39.67 2.66
6360 6611 3.570926 TGAGATCGCTGTTCGTTACTT 57.429 42.857 0.00 0.00 39.67 2.24
6361 6612 3.784701 ATGAGATCGCTGTTCGTTACT 57.215 42.857 0.00 0.00 39.67 2.24
6362 6613 6.198403 TCAATAATGAGATCGCTGTTCGTTAC 59.802 38.462 0.00 0.00 39.67 2.50
6363 6614 6.270064 TCAATAATGAGATCGCTGTTCGTTA 58.730 36.000 0.00 0.00 39.67 3.18
6364 6615 5.109210 TCAATAATGAGATCGCTGTTCGTT 58.891 37.500 0.00 0.00 39.67 3.85
6365 6616 4.682787 TCAATAATGAGATCGCTGTTCGT 58.317 39.130 0.00 0.00 39.67 3.85
6366 6617 5.835911 ATCAATAATGAGATCGCTGTTCG 57.164 39.130 0.00 0.00 39.39 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.