Multiple sequence alignment - TraesCS3A01G315300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G315300 chr3A 100.000 3792 0 0 1 3792 556453549 556457340 0.000000e+00 7003.0
1 TraesCS3A01G315300 chr3A 85.948 612 68 15 4 604 646686481 646685877 4.130000e-179 638.0
2 TraesCS3A01G315300 chr3A 89.610 77 8 0 1555 1631 501654514 501654590 8.670000e-17 99.0
3 TraesCS3A01G315300 chr3B 95.532 1813 69 7 1554 3365 561545123 561543322 0.000000e+00 2889.0
4 TraesCS3A01G315300 chr3B 88.476 781 42 18 658 1396 561545893 561545119 0.000000e+00 900.0
5 TraesCS3A01G315300 chr3B 87.188 601 63 12 1 598 419771230 419771819 0.000000e+00 671.0
6 TraesCS3A01G315300 chr3B 83.892 627 69 20 4 611 693473119 693472506 1.530000e-158 569.0
7 TraesCS3A01G315300 chr3B 84.013 613 73 17 5 604 228733671 228734271 1.980000e-157 566.0
8 TraesCS3A01G315300 chr3B 81.847 628 77 19 1 604 71156786 71157400 9.460000e-136 494.0
9 TraesCS3A01G315300 chr3B 92.713 247 14 3 3519 3763 561543307 561543063 1.680000e-93 353.0
10 TraesCS3A01G315300 chr3B 89.759 166 17 0 1392 1557 428703823 428703658 2.970000e-51 213.0
11 TraesCS3A01G315300 chr3D 96.499 1371 38 4 1554 2923 429611377 429610016 0.000000e+00 2257.0
12 TraesCS3A01G315300 chr3D 91.709 796 40 17 623 1396 429612164 429611373 0.000000e+00 1081.0
13 TraesCS3A01G315300 chr3D 93.187 455 29 2 2913 3365 429606642 429606188 0.000000e+00 667.0
14 TraesCS3A01G315300 chr3D 97.468 79 2 0 3519 3597 429606163 429606085 6.610000e-28 135.0
15 TraesCS3A01G315300 chr3D 91.026 78 7 0 1555 1632 280046554 280046631 5.180000e-19 106.0
16 TraesCS3A01G315300 chr3D 91.026 78 7 0 1554 1631 604609857 604609780 5.180000e-19 106.0
17 TraesCS3A01G315300 chr3D 96.774 62 2 0 3372 3433 554394790 554394851 1.860000e-18 104.0
18 TraesCS3A01G315300 chr3D 96.491 57 2 0 548 604 26589914 26589970 1.120000e-15 95.3
19 TraesCS3A01G315300 chr3D 86.792 53 5 1 552 604 15001018 15000968 1.470000e-04 58.4
20 TraesCS3A01G315300 chr7A 92.599 608 40 4 1 604 222519380 222519986 0.000000e+00 869.0
21 TraesCS3A01G315300 chr7A 88.562 612 54 12 1 604 94499032 94499635 0.000000e+00 728.0
22 TraesCS3A01G315300 chr7A 86.371 609 68 14 4 604 38785962 38785361 0.000000e+00 651.0
23 TraesCS3A01G315300 chr7A 90.062 161 16 0 1390 1550 323448597 323448437 3.840000e-50 209.0
24 TraesCS3A01G315300 chr7D 88.595 605 51 9 4 604 80436436 80435846 0.000000e+00 719.0
25 TraesCS3A01G315300 chr5B 85.366 615 64 17 4 604 112557231 112556629 6.960000e-172 614.0
26 TraesCS3A01G315300 chr5B 82.797 622 76 19 1 604 469486292 469486900 9.330000e-146 527.0
27 TraesCS3A01G315300 chr5B 79.231 260 50 4 2464 2723 58428758 58429013 1.080000e-40 178.0
28 TraesCS3A01G315300 chr5B 96.491 57 2 0 548 604 693998278 693998222 1.120000e-15 95.3
29 TraesCS3A01G315300 chr5B 93.182 44 1 2 3751 3792 6397232 6397189 3.160000e-06 63.9
30 TraesCS3A01G315300 chr6B 84.202 614 71 18 4 604 696017293 696016693 1.180000e-159 573.0
31 TraesCS3A01G315300 chr6B 82.637 622 78 19 1 604 692093226 692093835 1.210000e-144 523.0
32 TraesCS3A01G315300 chr6B 81.994 622 80 20 1 604 532267648 532268255 2.030000e-137 499.0
33 TraesCS3A01G315300 chr6B 89.610 77 8 0 1554 1630 502296809 502296885 8.670000e-17 99.0
34 TraesCS3A01G315300 chr2B 82.496 617 80 15 4 604 65467458 65466854 2.020000e-142 516.0
35 TraesCS3A01G315300 chr2B 96.774 62 2 0 3372 3433 58836976 58836915 1.860000e-18 104.0
36 TraesCS3A01G315300 chr2B 96.774 62 2 0 3372 3433 776896767 776896828 1.860000e-18 104.0
37 TraesCS3A01G315300 chr2B 98.246 57 1 0 548 604 397939566 397939510 2.410000e-17 100.0
38 TraesCS3A01G315300 chr2B 100.000 36 0 0 3757 3792 157740426 157740461 2.440000e-07 67.6
39 TraesCS3A01G315300 chr2B 89.796 49 2 3 3746 3792 88929892 88929939 4.090000e-05 60.2
40 TraesCS3A01G315300 chr2B 89.583 48 3 2 3745 3792 106936457 106936502 4.090000e-05 60.2
41 TraesCS3A01G315300 chr1A 81.099 619 90 20 1 604 280615662 280616268 1.590000e-128 470.0
42 TraesCS3A01G315300 chr1A 88.119 101 7 4 507 604 49506138 49506236 8.610000e-22 115.0
43 TraesCS3A01G315300 chr1A 89.610 77 8 0 1555 1631 303946747 303946671 8.670000e-17 99.0
44 TraesCS3A01G315300 chr1A 96.491 57 2 0 548 604 528550063 528550119 1.120000e-15 95.3
45 TraesCS3A01G315300 chr1B 88.032 376 42 3 1 373 605582587 605582962 3.480000e-120 442.0
46 TraesCS3A01G315300 chr1B 86.835 395 49 2 1 392 69835522 69835916 4.500000e-119 438.0
47 TraesCS3A01G315300 chr1B 83.871 465 49 18 160 610 344049791 344049339 1.630000e-113 420.0
48 TraesCS3A01G315300 chr6A 91.304 161 14 0 1391 1551 5939241 5939081 1.770000e-53 220.0
49 TraesCS3A01G315300 chr6A 96.825 63 1 1 3372 3433 398543826 398543764 1.860000e-18 104.0
50 TraesCS3A01G315300 chr4D 91.304 161 14 0 1392 1552 20044732 20044892 1.770000e-53 220.0
51 TraesCS3A01G315300 chr4D 91.720 157 12 1 1389 1544 499397980 499397824 2.290000e-52 217.0
52 TraesCS3A01G315300 chr4D 98.413 63 0 1 3372 3433 25492377 25492315 4.000000e-20 110.0
53 TraesCS3A01G315300 chr4D 89.796 49 3 2 3746 3792 363745169 363745121 1.140000e-05 62.1
54 TraesCS3A01G315300 chr2D 88.827 179 18 2 1383 1559 526525130 526524952 6.380000e-53 219.0
55 TraesCS3A01G315300 chr2D 86.813 182 21 3 1378 1557 431241205 431241025 2.310000e-47 200.0
56 TraesCS3A01G315300 chr2D 96.774 62 2 0 3372 3433 649289290 649289351 1.860000e-18 104.0
57 TraesCS3A01G315300 chr2D 91.489 47 2 2 3748 3792 616431432 616431478 3.160000e-06 63.9
58 TraesCS3A01G315300 chr5D 80.952 252 43 4 2464 2714 55638811 55638564 1.070000e-45 195.0
59 TraesCS3A01G315300 chr1D 84.211 209 20 9 1372 1575 289532289 289532089 1.390000e-44 191.0
60 TraesCS3A01G315300 chr1D 84.211 209 20 9 1372 1575 289597505 289597305 1.390000e-44 191.0
61 TraesCS3A01G315300 chr1D 98.413 63 0 1 3372 3433 125759078 125759016 4.000000e-20 110.0
62 TraesCS3A01G315300 chr1D 97.917 48 1 0 557 604 86220265 86220218 2.430000e-12 84.2
63 TraesCS3A01G315300 chr1D 85.714 77 9 2 1 76 109718359 109718434 3.140000e-11 80.5
64 TraesCS3A01G315300 chr1D 88.525 61 7 0 6 66 199275538 199275598 1.460000e-09 75.0
65 TraesCS3A01G315300 chr4B 98.413 63 0 1 3372 3433 3819820 3819758 4.000000e-20 110.0
66 TraesCS3A01G315300 chr4B 89.610 77 8 0 1554 1630 512766384 512766460 8.670000e-17 99.0
67 TraesCS3A01G315300 chr6D 96.825 63 1 1 3372 3433 20291114 20291176 1.860000e-18 104.0
68 TraesCS3A01G315300 chr6D 93.333 45 3 0 560 604 456306573 456306529 2.440000e-07 67.6
69 TraesCS3A01G315300 chr6D 97.059 34 0 1 3759 3792 262605050 262605018 5.290000e-04 56.5
70 TraesCS3A01G315300 chr4A 89.610 77 8 0 1555 1631 327265647 327265571 8.670000e-17 99.0
71 TraesCS3A01G315300 chr4A 86.667 60 7 1 10 68 541367961 541367902 8.790000e-07 65.8
72 TraesCS3A01G315300 chr4A 90.000 50 2 3 3746 3792 165815759 165815710 1.140000e-05 62.1
73 TraesCS3A01G315300 chr2A 91.111 45 3 1 3747 3791 369502498 369502541 4.090000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G315300 chr3A 556453549 556457340 3791 False 7003.000000 7003 100.000000 1 3792 1 chr3A.!!$F2 3791
1 TraesCS3A01G315300 chr3A 646685877 646686481 604 True 638.000000 638 85.948000 4 604 1 chr3A.!!$R1 600
2 TraesCS3A01G315300 chr3B 561543063 561545893 2830 True 1380.666667 2889 92.240333 658 3763 3 chr3B.!!$R3 3105
3 TraesCS3A01G315300 chr3B 419771230 419771819 589 False 671.000000 671 87.188000 1 598 1 chr3B.!!$F3 597
4 TraesCS3A01G315300 chr3B 693472506 693473119 613 True 569.000000 569 83.892000 4 611 1 chr3B.!!$R2 607
5 TraesCS3A01G315300 chr3B 228733671 228734271 600 False 566.000000 566 84.013000 5 604 1 chr3B.!!$F2 599
6 TraesCS3A01G315300 chr3B 71156786 71157400 614 False 494.000000 494 81.847000 1 604 1 chr3B.!!$F1 603
7 TraesCS3A01G315300 chr3D 429606085 429612164 6079 True 1035.000000 2257 94.715750 623 3597 4 chr3D.!!$R3 2974
8 TraesCS3A01G315300 chr7A 222519380 222519986 606 False 869.000000 869 92.599000 1 604 1 chr7A.!!$F2 603
9 TraesCS3A01G315300 chr7A 94499032 94499635 603 False 728.000000 728 88.562000 1 604 1 chr7A.!!$F1 603
10 TraesCS3A01G315300 chr7A 38785361 38785962 601 True 651.000000 651 86.371000 4 604 1 chr7A.!!$R1 600
11 TraesCS3A01G315300 chr7D 80435846 80436436 590 True 719.000000 719 88.595000 4 604 1 chr7D.!!$R1 600
12 TraesCS3A01G315300 chr5B 112556629 112557231 602 True 614.000000 614 85.366000 4 604 1 chr5B.!!$R2 600
13 TraesCS3A01G315300 chr5B 469486292 469486900 608 False 527.000000 527 82.797000 1 604 1 chr5B.!!$F2 603
14 TraesCS3A01G315300 chr6B 696016693 696017293 600 True 573.000000 573 84.202000 4 604 1 chr6B.!!$R1 600
15 TraesCS3A01G315300 chr6B 692093226 692093835 609 False 523.000000 523 82.637000 1 604 1 chr6B.!!$F3 603
16 TraesCS3A01G315300 chr6B 532267648 532268255 607 False 499.000000 499 81.994000 1 604 1 chr6B.!!$F2 603
17 TraesCS3A01G315300 chr2B 65466854 65467458 604 True 516.000000 516 82.496000 4 604 1 chr2B.!!$R2 600
18 TraesCS3A01G315300 chr1A 280615662 280616268 606 False 470.000000 470 81.099000 1 604 1 chr1A.!!$F2 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1043 0.466124 GAGCCATCCACCTGTACCTC 59.534 60.0 0.0 0.0 0.00 3.85 F
1046 1135 1.304891 CCTAACCATCCAAAGGGGGA 58.695 55.0 0.0 0.0 42.21 4.81 F
2224 2316 0.108585 TTTCAGCCCACTCTGACCAC 59.891 55.0 0.0 0.0 42.27 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2224 2316 1.153667 GAGCAGAGTGAGAAGGCCG 60.154 63.158 0.0 0.0 0.00 6.13 R
2456 2548 1.162698 CTCACAATCTGCACCCACAG 58.837 55.000 0.0 0.0 39.12 3.66 R
3739 7220 0.266152 ACCAGGGTAGATCAGGGGAG 59.734 60.000 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 6.806668 TGGTCATCTATTAATCAGGTGTGA 57.193 37.500 0.00 0.00 37.02 3.58
97 98 7.333323 TGATACACATGATGATCAAGTTCTGT 58.667 34.615 0.00 0.00 0.00 3.41
112 114 2.932614 GTTCTGTGTGATTCTGATCCCG 59.067 50.000 0.00 0.00 0.00 5.14
199 205 3.072038 TGAGGATATCATGTGGCTGAAGG 59.928 47.826 4.83 0.00 31.12 3.46
292 301 1.891919 GCCAAGAAGCACGACACCA 60.892 57.895 0.00 0.00 0.00 4.17
341 350 1.681793 GTCTACCCTCGCAATCTGCTA 59.318 52.381 0.00 0.00 42.25 3.49
514 549 8.908786 ATCTGTTTTAGTTCTGAACTGATGAA 57.091 30.769 28.46 14.68 42.84 2.57
533 572 8.902540 TGATGAACTTTTTCAGTAGCTTTCTA 57.097 30.769 0.00 0.00 45.07 2.10
544 585 8.547967 TTCAGTAGCTTTCTATCGAACAAAAT 57.452 30.769 0.00 0.00 0.00 1.82
604 645 5.014649 AGAGGCCTTCCTGTTCTTCTAAAAT 59.985 40.000 6.77 0.00 44.46 1.82
606 647 6.790319 AGGCCTTCCTGTTCTTCTAAAATTA 58.210 36.000 0.00 0.00 42.34 1.40
607 648 7.414266 AGGCCTTCCTGTTCTTCTAAAATTAT 58.586 34.615 0.00 0.00 42.34 1.28
609 650 8.841300 GGCCTTCCTGTTCTTCTAAAATTATAG 58.159 37.037 0.00 0.00 0.00 1.31
610 651 8.841300 GCCTTCCTGTTCTTCTAAAATTATAGG 58.159 37.037 0.00 0.00 0.00 2.57
611 652 8.841300 CCTTCCTGTTCTTCTAAAATTATAGGC 58.159 37.037 0.00 0.00 0.00 3.93
612 653 9.620259 CTTCCTGTTCTTCTAAAATTATAGGCT 57.380 33.333 0.00 0.00 0.00 4.58
613 654 9.975218 TTCCTGTTCTTCTAAAATTATAGGCTT 57.025 29.630 0.00 0.00 0.00 4.35
614 655 9.975218 TCCTGTTCTTCTAAAATTATAGGCTTT 57.025 29.630 0.00 0.00 0.00 3.51
651 692 8.877808 AAAGCCAAAAATCTCTTGTCTAAAAG 57.122 30.769 0.00 0.00 0.00 2.27
652 693 6.986250 AGCCAAAAATCTCTTGTCTAAAAGG 58.014 36.000 0.00 0.00 0.00 3.11
661 702 7.478520 TCTCTTGTCTAAAAGGAAAAACTCG 57.521 36.000 0.00 0.00 0.00 4.18
671 712 3.977427 AGGAAAAACTCGTGGCAAAATC 58.023 40.909 0.00 0.00 0.00 2.17
770 819 2.498726 CTCGCTTCTGCCTCCTCC 59.501 66.667 0.00 0.00 35.36 4.30
818 885 3.282745 GAGCTCGTCGCCTTCCACA 62.283 63.158 0.00 0.00 40.39 4.17
881 970 1.153107 TCGTCGCCGGATTCCTAGA 60.153 57.895 5.05 0.00 33.95 2.43
887 976 2.354773 CGGATTCCTAGACGCCGC 60.355 66.667 0.30 0.00 35.17 6.53
954 1043 0.466124 GAGCCATCCACCTGTACCTC 59.534 60.000 0.00 0.00 0.00 3.85
970 1059 3.708220 CTCCGCGGCAGGTCTTCTC 62.708 68.421 23.51 0.00 0.00 2.87
993 1082 2.355115 CTCCCCTTTTCCCCACCG 59.645 66.667 0.00 0.00 0.00 4.94
1046 1135 1.304891 CCTAACCATCCAAAGGGGGA 58.695 55.000 0.00 0.00 42.21 4.81
1199 1288 2.002586 CTTCTTCATGGTACGGCACTG 58.997 52.381 0.00 0.00 0.00 3.66
1401 1493 9.764363 TGCTACATAAAACATATACTTCCTCAG 57.236 33.333 0.00 0.00 0.00 3.35
1402 1494 9.765795 GCTACATAAAACATATACTTCCTCAGT 57.234 33.333 0.00 0.00 39.87 3.41
1417 1509 8.966069 ACTTCCTCAGTTTCTTAATATAAGGC 57.034 34.615 0.00 0.00 27.32 4.35
1418 1510 8.773216 ACTTCCTCAGTTTCTTAATATAAGGCT 58.227 33.333 0.00 0.00 27.32 4.58
1419 1511 9.620259 CTTCCTCAGTTTCTTAATATAAGGCTT 57.380 33.333 4.58 4.58 0.00 4.35
1420 1512 9.975218 TTCCTCAGTTTCTTAATATAAGGCTTT 57.025 29.630 4.45 0.00 0.00 3.51
1421 1513 9.975218 TCCTCAGTTTCTTAATATAAGGCTTTT 57.025 29.630 4.45 0.00 0.00 2.27
1450 1542 9.820229 GAGATTTCACTATAGAGACTACATTCG 57.180 37.037 6.78 0.00 0.00 3.34
1451 1543 8.788806 AGATTTCACTATAGAGACTACATTCGG 58.211 37.037 6.78 0.00 0.00 4.30
1452 1544 8.693120 ATTTCACTATAGAGACTACATTCGGA 57.307 34.615 6.78 0.00 0.00 4.55
1453 1545 8.693120 TTTCACTATAGAGACTACATTCGGAT 57.307 34.615 6.78 0.00 0.00 4.18
1454 1546 7.674471 TCACTATAGAGACTACATTCGGATG 57.326 40.000 6.78 0.88 39.25 3.51
1456 1548 8.373220 TCACTATAGAGACTACATTCGGATGTA 58.627 37.037 15.76 15.76 44.51 2.29
1457 1549 9.168451 CACTATAGAGACTACATTCGGATGTAT 57.832 37.037 16.89 7.61 45.20 2.29
1463 1555 9.386010 AGAGACTACATTCGGATGTATATAGAC 57.614 37.037 16.89 7.71 45.20 2.59
1464 1556 8.199176 AGACTACATTCGGATGTATATAGACG 57.801 38.462 16.89 6.27 45.20 4.18
1465 1557 6.783162 ACTACATTCGGATGTATATAGACGC 58.217 40.000 16.89 0.00 45.20 5.19
1466 1558 4.995124 ACATTCGGATGTATATAGACGCC 58.005 43.478 7.81 0.00 44.51 5.68
1467 1559 4.705507 ACATTCGGATGTATATAGACGCCT 59.294 41.667 7.81 0.00 44.51 5.52
1468 1560 5.185249 ACATTCGGATGTATATAGACGCCTT 59.815 40.000 7.81 0.00 44.51 4.35
1469 1561 5.717078 TTCGGATGTATATAGACGCCTTT 57.283 39.130 7.38 0.00 0.00 3.11
1470 1562 5.717078 TCGGATGTATATAGACGCCTTTT 57.283 39.130 7.38 0.00 0.00 2.27
1471 1563 6.822667 TCGGATGTATATAGACGCCTTTTA 57.177 37.500 7.38 0.00 0.00 1.52
1472 1564 7.218228 TCGGATGTATATAGACGCCTTTTAA 57.782 36.000 7.38 0.00 0.00 1.52
1473 1565 7.660112 TCGGATGTATATAGACGCCTTTTAAA 58.340 34.615 7.38 0.00 0.00 1.52
1474 1566 7.811236 TCGGATGTATATAGACGCCTTTTAAAG 59.189 37.037 0.00 0.00 0.00 1.85
1475 1567 7.411588 CGGATGTATATAGACGCCTTTTAAAGC 60.412 40.741 0.00 0.00 0.00 3.51
1476 1568 7.386848 GGATGTATATAGACGCCTTTTAAAGCA 59.613 37.037 0.00 0.00 0.00 3.91
1477 1569 8.848474 ATGTATATAGACGCCTTTTAAAGCAT 57.152 30.769 0.00 0.00 0.00 3.79
1478 1570 9.938280 ATGTATATAGACGCCTTTTAAAGCATA 57.062 29.630 0.00 0.00 0.00 3.14
1479 1571 9.419297 TGTATATAGACGCCTTTTAAAGCATAG 57.581 33.333 0.00 0.00 0.00 2.23
1480 1572 9.635520 GTATATAGACGCCTTTTAAAGCATAGA 57.364 33.333 0.00 0.00 0.00 1.98
1482 1574 9.726438 ATATAGACGCCTTTTAAAGCATAGATT 57.274 29.630 0.00 0.00 0.00 2.40
1483 1575 6.364945 AGACGCCTTTTAAAGCATAGATTC 57.635 37.500 0.00 0.00 0.00 2.52
1484 1576 5.880332 AGACGCCTTTTAAAGCATAGATTCA 59.120 36.000 0.00 0.00 0.00 2.57
1485 1577 5.880341 ACGCCTTTTAAAGCATAGATTCAC 58.120 37.500 0.00 0.00 0.00 3.18
1486 1578 5.648092 ACGCCTTTTAAAGCATAGATTCACT 59.352 36.000 0.00 0.00 0.00 3.41
1487 1579 6.183360 ACGCCTTTTAAAGCATAGATTCACTC 60.183 38.462 0.00 0.00 0.00 3.51
1488 1580 6.183360 CGCCTTTTAAAGCATAGATTCACTCA 60.183 38.462 0.00 0.00 0.00 3.41
1489 1581 7.467811 CGCCTTTTAAAGCATAGATTCACTCAT 60.468 37.037 0.00 0.00 0.00 2.90
1490 1582 8.193438 GCCTTTTAAAGCATAGATTCACTCATT 58.807 33.333 0.00 0.00 0.00 2.57
1494 1586 8.915871 TTAAAGCATAGATTCACTCATTTTGC 57.084 30.769 0.00 0.00 0.00 3.68
1495 1587 6.770746 AAGCATAGATTCACTCATTTTGCT 57.229 33.333 0.00 0.00 39.42 3.91
1496 1588 6.374565 AGCATAGATTCACTCATTTTGCTC 57.625 37.500 0.00 0.00 32.86 4.26
1497 1589 5.298777 AGCATAGATTCACTCATTTTGCTCC 59.701 40.000 0.00 0.00 32.86 4.70
1498 1590 5.745514 CATAGATTCACTCATTTTGCTCCG 58.254 41.667 0.00 0.00 0.00 4.63
1499 1591 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1500 1592 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1501 1593 4.631813 AGATTCACTCATTTTGCTCCGTAC 59.368 41.667 0.00 0.00 0.00 3.67
1502 1594 2.333926 TCACTCATTTTGCTCCGTACG 58.666 47.619 8.69 8.69 0.00 3.67
1503 1595 2.066262 CACTCATTTTGCTCCGTACGT 58.934 47.619 15.21 0.00 0.00 3.57
1504 1596 3.057386 TCACTCATTTTGCTCCGTACGTA 60.057 43.478 15.21 0.00 0.00 3.57
1505 1597 3.303495 CACTCATTTTGCTCCGTACGTAG 59.697 47.826 15.21 9.26 0.00 3.51
1507 1599 3.916761 TCATTTTGCTCCGTACGTAGTT 58.083 40.909 15.21 0.00 37.78 2.24
1508 1600 4.309099 TCATTTTGCTCCGTACGTAGTTT 58.691 39.130 15.21 0.00 37.78 2.66
1509 1601 5.468592 TCATTTTGCTCCGTACGTAGTTTA 58.531 37.500 15.21 0.00 37.78 2.01
1510 1602 6.101332 TCATTTTGCTCCGTACGTAGTTTAT 58.899 36.000 15.21 0.00 37.78 1.40
1511 1603 7.257003 TCATTTTGCTCCGTACGTAGTTTATA 58.743 34.615 15.21 0.00 37.78 0.98
1512 1604 7.433131 TCATTTTGCTCCGTACGTAGTTTATAG 59.567 37.037 15.21 0.00 37.78 1.31
1513 1605 5.818136 TTGCTCCGTACGTAGTTTATAGT 57.182 39.130 15.21 0.00 37.78 2.12
1514 1606 5.160699 TGCTCCGTACGTAGTTTATAGTG 57.839 43.478 15.21 0.00 37.78 2.74
1515 1607 4.875536 TGCTCCGTACGTAGTTTATAGTGA 59.124 41.667 15.21 0.00 37.78 3.41
1516 1608 5.353956 TGCTCCGTACGTAGTTTATAGTGAA 59.646 40.000 15.21 0.00 37.78 3.18
1517 1609 5.906285 GCTCCGTACGTAGTTTATAGTGAAG 59.094 44.000 15.21 0.00 37.78 3.02
1518 1610 6.457528 GCTCCGTACGTAGTTTATAGTGAAGT 60.458 42.308 15.21 0.00 37.78 3.01
1519 1611 7.005062 TCCGTACGTAGTTTATAGTGAAGTC 57.995 40.000 15.21 0.00 37.78 3.01
1520 1612 6.818644 TCCGTACGTAGTTTATAGTGAAGTCT 59.181 38.462 15.21 0.00 37.78 3.24
1521 1613 7.010552 TCCGTACGTAGTTTATAGTGAAGTCTC 59.989 40.741 15.21 0.00 37.78 3.36
1522 1614 7.010923 CCGTACGTAGTTTATAGTGAAGTCTCT 59.989 40.741 15.21 0.00 37.78 3.10
1523 1615 8.386606 CGTACGTAGTTTATAGTGAAGTCTCTT 58.613 37.037 7.22 0.00 37.78 2.85
1549 1641 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1550 1642 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1551 1643 5.543020 AGACTTATATTTAGGAACGGAGGGG 59.457 44.000 0.00 0.00 0.00 4.79
1552 1644 5.222086 ACTTATATTTAGGAACGGAGGGGT 58.778 41.667 0.00 0.00 0.00 4.95
1553 1645 5.668991 ACTTATATTTAGGAACGGAGGGGTT 59.331 40.000 0.00 0.00 0.00 4.11
1554 1646 6.845975 ACTTATATTTAGGAACGGAGGGGTTA 59.154 38.462 0.00 0.00 0.00 2.85
1604 1696 3.905493 TGACCCAAAATACAAAGGGGA 57.095 42.857 1.34 0.00 45.83 4.81
1686 1778 6.158598 TGCTTTTATTTTTCTGATCTGGCAC 58.841 36.000 0.00 0.00 0.00 5.01
1811 1903 1.755783 GCTGGCCCAAAGGATCCTG 60.756 63.158 17.02 4.26 33.47 3.86
1846 1938 3.372822 CAGGTCTCTTCTACTCTGACGTC 59.627 52.174 9.11 9.11 0.00 4.34
1874 1966 2.093973 GCCATATGTCGGAGGGACTATG 60.094 54.545 1.24 2.26 46.24 2.23
1883 1975 2.036475 CGGAGGGACTATGTGAAGATGG 59.964 54.545 0.00 0.00 41.55 3.51
2079 2171 2.359230 GCTGGAGCTTGCGAAGGT 60.359 61.111 0.00 1.09 42.93 3.50
2104 2196 1.333636 CCGAGAGCCTGGGACTTGAT 61.334 60.000 0.00 0.00 30.68 2.57
2224 2316 0.108585 TTTCAGCCCACTCTGACCAC 59.891 55.000 0.00 0.00 42.27 4.16
2254 2346 2.094854 CACTCTGCTCTTCCAAAATGGC 60.095 50.000 0.00 0.00 37.47 4.40
2456 2548 2.888594 ACACACGCATGTCCTATGTAC 58.111 47.619 0.00 0.00 36.72 2.90
2802 2894 5.294552 GTCCTACAAGTTGATATGCTGAACC 59.705 44.000 10.54 0.00 0.00 3.62
2814 2906 9.851686 TTGATATGCTGAACCTTTATGTCTTAT 57.148 29.630 0.00 0.00 0.00 1.73
2866 2958 2.950975 CCTCCTCTTCGGTTCCTAGTAC 59.049 54.545 0.00 0.00 0.00 2.73
2959 6436 4.963318 TGGATTAGGAAGAATGATCGCT 57.037 40.909 0.00 0.00 0.00 4.93
3014 6491 6.700960 GTGGTTCTGAGAGATGAATGTGATAG 59.299 42.308 0.00 0.00 0.00 2.08
3022 6499 5.304101 AGAGATGAATGTGATAGAGTGGGTC 59.696 44.000 0.00 0.00 0.00 4.46
3025 6502 2.160721 ATGTGATAGAGTGGGTCGGT 57.839 50.000 0.00 0.00 0.00 4.69
3092 6569 6.660949 GCTTTAGGGATATTATTCACTGGCAT 59.339 38.462 0.00 0.00 30.29 4.40
3097 6574 6.012157 AGGGATATTATTCACTGGCATAGCTT 60.012 38.462 0.00 0.00 0.00 3.74
3101 6578 6.884280 ATTATTCACTGGCATAGCTTAACC 57.116 37.500 0.00 0.00 0.00 2.85
3176 6653 5.327616 TGCATGTGATTAATGGTTCAAGG 57.672 39.130 0.00 0.00 0.00 3.61
3231 6708 1.202915 TGAAGGACCATGCAGCAAGAA 60.203 47.619 0.00 0.00 0.00 2.52
3350 6829 6.428083 TGGGATCAAAGACTAGTTTGTACA 57.572 37.500 0.00 0.00 38.38 2.90
3351 6830 7.016153 TGGGATCAAAGACTAGTTTGTACAT 57.984 36.000 0.00 0.00 38.38 2.29
3352 6831 7.103641 TGGGATCAAAGACTAGTTTGTACATC 58.896 38.462 0.00 0.00 38.38 3.06
3353 6832 7.038302 TGGGATCAAAGACTAGTTTGTACATCT 60.038 37.037 0.00 1.23 38.38 2.90
3354 6833 8.475639 GGGATCAAAGACTAGTTTGTACATCTA 58.524 37.037 0.00 2.43 38.38 1.98
3355 6834 9.871238 GGATCAAAGACTAGTTTGTACATCTAA 57.129 33.333 0.00 0.00 38.38 2.10
3367 6846 9.066892 AGTTTGTACATCTAAATTCATGTGTGT 57.933 29.630 0.00 0.00 34.92 3.72
3368 6847 9.117145 GTTTGTACATCTAAATTCATGTGTGTG 57.883 33.333 0.00 0.00 34.92 3.82
3369 6848 7.977789 TGTACATCTAAATTCATGTGTGTGT 57.022 32.000 0.00 0.00 34.92 3.72
3370 6849 7.805700 TGTACATCTAAATTCATGTGTGTGTG 58.194 34.615 0.00 0.00 34.92 3.82
3371 6850 6.882610 ACATCTAAATTCATGTGTGTGTGT 57.117 33.333 0.00 0.00 31.80 3.72
3372 6851 7.275888 ACATCTAAATTCATGTGTGTGTGTT 57.724 32.000 0.00 0.00 31.80 3.32
3373 6852 7.715657 ACATCTAAATTCATGTGTGTGTGTTT 58.284 30.769 0.00 0.00 31.80 2.83
3374 6853 8.196771 ACATCTAAATTCATGTGTGTGTGTTTT 58.803 29.630 0.00 0.00 31.80 2.43
3375 6854 9.676195 CATCTAAATTCATGTGTGTGTGTTTTA 57.324 29.630 0.00 0.00 0.00 1.52
3377 6856 9.509855 TCTAAATTCATGTGTGTGTGTTTTAAC 57.490 29.630 0.00 0.00 0.00 2.01
3378 6857 9.295214 CTAAATTCATGTGTGTGTGTTTTAACA 57.705 29.630 0.00 0.00 36.38 2.41
3379 6858 8.715191 AAATTCATGTGTGTGTGTTTTAACAT 57.285 26.923 0.00 0.00 41.59 2.71
3380 6859 9.809096 AAATTCATGTGTGTGTGTTTTAACATA 57.191 25.926 0.00 0.00 41.59 2.29
3381 6860 9.809096 AATTCATGTGTGTGTGTTTTAACATAA 57.191 25.926 0.00 0.00 41.59 1.90
3382 6861 9.809096 ATTCATGTGTGTGTGTTTTAACATAAA 57.191 25.926 0.00 0.00 41.59 1.40
3383 6862 8.848948 TCATGTGTGTGTGTTTTAACATAAAG 57.151 30.769 0.00 0.00 41.59 1.85
3384 6863 8.678199 TCATGTGTGTGTGTTTTAACATAAAGA 58.322 29.630 0.00 0.00 41.59 2.52
3385 6864 9.462174 CATGTGTGTGTGTTTTAACATAAAGAT 57.538 29.630 0.00 0.00 41.59 2.40
3387 6866 9.862371 TGTGTGTGTGTTTTAACATAAAGATTT 57.138 25.926 0.00 0.00 41.59 2.17
3415 6894 8.773404 TTAACTTAGGAGCATTTTACAGAGAC 57.227 34.615 0.00 0.00 0.00 3.36
3416 6895 6.360370 ACTTAGGAGCATTTTACAGAGACA 57.640 37.500 0.00 0.00 0.00 3.41
3417 6896 6.769512 ACTTAGGAGCATTTTACAGAGACAA 58.230 36.000 0.00 0.00 0.00 3.18
3418 6897 6.876257 ACTTAGGAGCATTTTACAGAGACAAG 59.124 38.462 0.00 0.00 0.00 3.16
3419 6898 4.006319 AGGAGCATTTTACAGAGACAAGC 58.994 43.478 0.00 0.00 0.00 4.01
3420 6899 3.181516 GGAGCATTTTACAGAGACAAGCG 60.182 47.826 0.00 0.00 0.00 4.68
3421 6900 3.403038 AGCATTTTACAGAGACAAGCGT 58.597 40.909 0.00 0.00 0.00 5.07
3422 6901 3.187227 AGCATTTTACAGAGACAAGCGTG 59.813 43.478 0.00 0.00 0.00 5.34
3423 6902 3.186409 GCATTTTACAGAGACAAGCGTGA 59.814 43.478 6.65 0.00 0.00 4.35
3424 6903 4.319477 GCATTTTACAGAGACAAGCGTGAA 60.319 41.667 6.65 0.00 0.00 3.18
3425 6904 5.747565 CATTTTACAGAGACAAGCGTGAAA 58.252 37.500 6.65 0.00 0.00 2.69
3426 6905 5.403897 TTTTACAGAGACAAGCGTGAAAG 57.596 39.130 6.65 0.00 0.00 2.62
3427 6906 1.871080 ACAGAGACAAGCGTGAAAGG 58.129 50.000 6.65 0.00 0.00 3.11
3428 6907 1.412710 ACAGAGACAAGCGTGAAAGGA 59.587 47.619 6.65 0.00 0.00 3.36
3429 6908 2.158957 ACAGAGACAAGCGTGAAAGGAA 60.159 45.455 6.65 0.00 0.00 3.36
3430 6909 2.478134 CAGAGACAAGCGTGAAAGGAAG 59.522 50.000 6.65 0.00 0.00 3.46
3431 6910 1.195674 GAGACAAGCGTGAAAGGAAGC 59.804 52.381 6.65 0.00 0.00 3.86
3438 6917 3.674997 AGCGTGAAAGGAAGCATCTAAA 58.325 40.909 0.00 0.00 0.00 1.85
3449 6928 4.889409 GGAAGCATCTAAATTCATGTGGGA 59.111 41.667 0.00 0.00 0.00 4.37
3481 6960 5.755409 TGGAACAAGTGCTAAGGATAGAA 57.245 39.130 0.00 0.00 31.92 2.10
3482 6961 6.313519 TGGAACAAGTGCTAAGGATAGAAT 57.686 37.500 0.00 0.00 31.92 2.40
3483 6962 6.721318 TGGAACAAGTGCTAAGGATAGAATT 58.279 36.000 0.00 0.00 31.92 2.17
3484 6963 6.599244 TGGAACAAGTGCTAAGGATAGAATTG 59.401 38.462 0.00 0.00 31.92 2.32
3485 6964 6.599638 GGAACAAGTGCTAAGGATAGAATTGT 59.400 38.462 0.00 0.00 33.29 2.71
3486 6965 7.121315 GGAACAAGTGCTAAGGATAGAATTGTT 59.879 37.037 0.00 0.00 38.54 2.83
3487 6966 7.617041 ACAAGTGCTAAGGATAGAATTGTTC 57.383 36.000 0.00 0.00 30.58 3.18
3488 6967 7.398024 ACAAGTGCTAAGGATAGAATTGTTCT 58.602 34.615 0.00 0.00 43.72 3.01
3489 6968 7.550906 ACAAGTGCTAAGGATAGAATTGTTCTC 59.449 37.037 0.00 0.00 41.14 2.87
3490 6969 7.430760 AGTGCTAAGGATAGAATTGTTCTCT 57.569 36.000 0.00 0.00 41.14 3.10
3491 6970 7.496747 AGTGCTAAGGATAGAATTGTTCTCTC 58.503 38.462 0.00 0.00 41.14 3.20
3492 6971 6.419413 GTGCTAAGGATAGAATTGTTCTCTCG 59.581 42.308 0.00 0.00 41.14 4.04
3493 6972 5.923684 GCTAAGGATAGAATTGTTCTCTCGG 59.076 44.000 0.00 0.00 41.14 4.63
3494 6973 4.946478 AGGATAGAATTGTTCTCTCGGG 57.054 45.455 0.00 0.00 41.14 5.14
3495 6974 4.290942 AGGATAGAATTGTTCTCTCGGGT 58.709 43.478 0.00 0.00 41.14 5.28
3496 6975 4.717280 AGGATAGAATTGTTCTCTCGGGTT 59.283 41.667 0.00 0.00 41.14 4.11
3497 6976 5.189934 AGGATAGAATTGTTCTCTCGGGTTT 59.810 40.000 0.00 0.00 41.14 3.27
3498 6977 5.880887 GGATAGAATTGTTCTCTCGGGTTTT 59.119 40.000 0.00 0.00 41.14 2.43
3499 6978 6.183360 GGATAGAATTGTTCTCTCGGGTTTTG 60.183 42.308 0.00 0.00 41.14 2.44
3500 6979 3.253432 AGAATTGTTCTCTCGGGTTTTGC 59.747 43.478 0.00 0.00 34.07 3.68
3501 6980 2.045561 TTGTTCTCTCGGGTTTTGCA 57.954 45.000 0.00 0.00 0.00 4.08
3502 6981 1.593196 TGTTCTCTCGGGTTTTGCAG 58.407 50.000 0.00 0.00 0.00 4.41
3503 6982 1.134220 TGTTCTCTCGGGTTTTGCAGT 60.134 47.619 0.00 0.00 0.00 4.40
3504 6983 1.264288 GTTCTCTCGGGTTTTGCAGTG 59.736 52.381 0.00 0.00 0.00 3.66
3505 6984 0.756294 TCTCTCGGGTTTTGCAGTGA 59.244 50.000 0.00 0.00 0.00 3.41
3506 6985 1.347707 TCTCTCGGGTTTTGCAGTGAT 59.652 47.619 0.00 0.00 0.00 3.06
3507 6986 1.466167 CTCTCGGGTTTTGCAGTGATG 59.534 52.381 0.00 0.00 0.00 3.07
3508 6987 1.202758 TCTCGGGTTTTGCAGTGATGT 60.203 47.619 0.00 0.00 0.00 3.06
3509 6988 0.950836 TCGGGTTTTGCAGTGATGTG 59.049 50.000 0.00 0.00 0.00 3.21
3510 6989 0.664166 CGGGTTTTGCAGTGATGTGC 60.664 55.000 0.00 0.00 44.27 4.57
3516 6995 4.961622 GCAGTGATGTGCGATTCG 57.038 55.556 0.62 0.62 32.74 3.34
3517 6996 2.372919 GCAGTGATGTGCGATTCGA 58.627 52.632 10.88 0.00 32.74 3.71
3615 7095 6.770286 AGTTGGTATTGAGGACCATGATAT 57.230 37.500 0.00 0.00 46.29 1.63
3622 7102 8.352942 GGTATTGAGGACCATGATATTTTTGTC 58.647 37.037 0.00 0.00 36.91 3.18
3631 7111 9.218440 GACCATGATATTTTTGTCAAAATTGGT 57.782 29.630 11.44 15.12 44.91 3.67
3632 7112 9.218440 ACCATGATATTTTTGTCAAAATTGGTC 57.782 29.630 11.44 10.70 41.70 4.02
3681 7161 5.692654 TGCATGACAAATTGACAATTGACAG 59.307 36.000 13.59 7.55 0.00 3.51
3703 7183 6.025896 CAGTTAAGTGTGCTGCTCATAATTG 58.974 40.000 7.73 6.86 0.00 2.32
3728 7208 1.351017 TGAGTCTAAGCAAGGGTTGGG 59.649 52.381 0.00 0.00 0.00 4.12
3739 7220 1.632589 AGGGTTGGGCACTCATTTTC 58.367 50.000 0.00 0.00 0.00 2.29
3740 7221 1.147817 AGGGTTGGGCACTCATTTTCT 59.852 47.619 0.00 0.00 0.00 2.52
3747 7228 1.004745 GGCACTCATTTTCTCCCCTGA 59.995 52.381 0.00 0.00 0.00 3.86
3753 7234 4.410555 ACTCATTTTCTCCCCTGATCTACC 59.589 45.833 0.00 0.00 0.00 3.18
3763 7244 3.838903 CCCCTGATCTACCCTGGTTATAC 59.161 52.174 0.00 0.00 0.00 1.47
3764 7245 4.450861 CCCCTGATCTACCCTGGTTATACT 60.451 50.000 0.00 0.00 0.00 2.12
3765 7246 4.773149 CCCTGATCTACCCTGGTTATACTC 59.227 50.000 0.00 0.00 0.00 2.59
3766 7247 4.773149 CCTGATCTACCCTGGTTATACTCC 59.227 50.000 0.00 0.00 0.00 3.85
3767 7248 4.748701 TGATCTACCCTGGTTATACTCCC 58.251 47.826 0.00 0.00 0.00 4.30
3768 7249 4.422592 TGATCTACCCTGGTTATACTCCCT 59.577 45.833 0.00 0.00 0.00 4.20
3769 7250 4.466255 TCTACCCTGGTTATACTCCCTC 57.534 50.000 0.00 0.00 0.00 4.30
3770 7251 2.491312 ACCCTGGTTATACTCCCTCC 57.509 55.000 0.00 0.00 0.00 4.30
3771 7252 1.339097 CCCTGGTTATACTCCCTCCG 58.661 60.000 0.00 0.00 0.00 4.63
3772 7253 1.412649 CCCTGGTTATACTCCCTCCGT 60.413 57.143 0.00 0.00 0.00 4.69
3773 7254 2.395619 CCTGGTTATACTCCCTCCGTT 58.604 52.381 0.00 0.00 0.00 4.44
3774 7255 2.364647 CCTGGTTATACTCCCTCCGTTC 59.635 54.545 0.00 0.00 0.00 3.95
3775 7256 2.364647 CTGGTTATACTCCCTCCGTTCC 59.635 54.545 0.00 0.00 0.00 3.62
3776 7257 2.023695 TGGTTATACTCCCTCCGTTCCT 60.024 50.000 0.00 0.00 0.00 3.36
3777 7258 3.205056 TGGTTATACTCCCTCCGTTCCTA 59.795 47.826 0.00 0.00 0.00 2.94
3778 7259 4.218312 GGTTATACTCCCTCCGTTCCTAA 58.782 47.826 0.00 0.00 0.00 2.69
3779 7260 4.651045 GGTTATACTCCCTCCGTTCCTAAA 59.349 45.833 0.00 0.00 0.00 1.85
3780 7261 5.306419 GGTTATACTCCCTCCGTTCCTAAAT 59.694 44.000 0.00 0.00 0.00 1.40
3781 7262 6.494835 GGTTATACTCCCTCCGTTCCTAAATA 59.505 42.308 0.00 0.00 0.00 1.40
3782 7263 7.179872 GGTTATACTCCCTCCGTTCCTAAATAT 59.820 40.741 0.00 0.00 0.00 1.28
3783 7264 8.591940 GTTATACTCCCTCCGTTCCTAAATATT 58.408 37.037 0.00 0.00 0.00 1.28
3784 7265 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3785 7266 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3786 7267 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3787 7268 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3788 7269 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3789 7270 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3790 7271 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3791 7272 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 7.563020 ACTTGATCATCATGTGTATCAGTCTT 58.437 34.615 5.39 0.00 34.09 3.01
97 98 2.304470 TGTTTCCGGGATCAGAATCACA 59.696 45.455 0.00 0.00 34.76 3.58
112 114 1.664649 GCGGGCTTTGCTTGTTTCC 60.665 57.895 0.00 0.00 0.00 3.13
199 205 2.167075 CAGCATCCAATCCAGGGTTTTC 59.833 50.000 0.00 0.00 0.00 2.29
292 301 1.956477 GTTCACCATGGTCTTGCTGTT 59.044 47.619 16.53 0.00 0.00 3.16
426 453 2.804647 ACGCACACTAAAGGCAAAAAC 58.195 42.857 0.00 0.00 0.00 2.43
510 545 8.660373 CGATAGAAAGCTACTGAAAAAGTTCAT 58.340 33.333 0.00 0.00 40.21 2.57
511 546 7.870954 TCGATAGAAAGCTACTGAAAAAGTTCA 59.129 33.333 0.00 0.00 46.15 3.18
512 547 8.240883 TCGATAGAAAGCTACTGAAAAAGTTC 57.759 34.615 0.00 0.00 46.15 3.01
533 572 7.825681 TGAAACCATACATCATTTTGTTCGAT 58.174 30.769 0.00 0.00 0.00 3.59
544 585 8.685427 CATTAACCAGAATGAAACCATACATCA 58.315 33.333 0.00 0.00 39.69 3.07
624 665 9.665719 TTTTAGACAAGAGATTTTTGGCTTTTT 57.334 25.926 0.00 0.00 41.00 1.94
625 666 9.317936 CTTTTAGACAAGAGATTTTTGGCTTTT 57.682 29.630 0.00 0.00 41.00 2.27
626 667 7.928167 CCTTTTAGACAAGAGATTTTTGGCTTT 59.072 33.333 0.00 0.00 41.00 3.51
627 668 7.287696 TCCTTTTAGACAAGAGATTTTTGGCTT 59.712 33.333 0.00 0.00 41.00 4.35
628 669 6.777580 TCCTTTTAGACAAGAGATTTTTGGCT 59.222 34.615 0.00 0.00 45.55 4.75
629 670 6.981722 TCCTTTTAGACAAGAGATTTTTGGC 58.018 36.000 0.00 0.00 33.65 4.52
630 671 9.816354 TTTTCCTTTTAGACAAGAGATTTTTGG 57.184 29.630 0.00 0.00 0.00 3.28
635 676 8.560374 CGAGTTTTTCCTTTTAGACAAGAGATT 58.440 33.333 0.00 0.00 0.00 2.40
636 677 7.715686 ACGAGTTTTTCCTTTTAGACAAGAGAT 59.284 33.333 0.00 0.00 0.00 2.75
637 678 7.011109 CACGAGTTTTTCCTTTTAGACAAGAGA 59.989 37.037 0.00 0.00 0.00 3.10
638 679 7.126398 CACGAGTTTTTCCTTTTAGACAAGAG 58.874 38.462 0.00 0.00 0.00 2.85
639 680 6.037830 CCACGAGTTTTTCCTTTTAGACAAGA 59.962 38.462 0.00 0.00 0.00 3.02
640 681 6.199393 CCACGAGTTTTTCCTTTTAGACAAG 58.801 40.000 0.00 0.00 0.00 3.16
641 682 5.449451 GCCACGAGTTTTTCCTTTTAGACAA 60.449 40.000 0.00 0.00 0.00 3.18
642 683 4.035909 GCCACGAGTTTTTCCTTTTAGACA 59.964 41.667 0.00 0.00 0.00 3.41
646 687 4.985538 TTGCCACGAGTTTTTCCTTTTA 57.014 36.364 0.00 0.00 0.00 1.52
651 692 3.057019 GGATTTTGCCACGAGTTTTTCC 58.943 45.455 0.00 0.00 0.00 3.13
652 693 3.057019 GGGATTTTGCCACGAGTTTTTC 58.943 45.455 0.00 0.00 0.00 2.29
661 702 0.608130 GTGAAGGGGGATTTTGCCAC 59.392 55.000 0.00 0.00 0.00 5.01
671 712 1.003696 GAACTGAGGAAGTGAAGGGGG 59.996 57.143 0.00 0.00 39.81 5.40
970 1059 1.001269 GGGAAAAGGGGAGGGTTCG 60.001 63.158 0.00 0.00 0.00 3.95
1046 1135 1.004560 CCAGCACAGTCACCGTGAT 60.005 57.895 4.13 0.00 36.43 3.06
1129 1218 0.109272 TGTGTCGCCTGAGATCGTTC 60.109 55.000 0.00 0.00 0.00 3.95
1171 1260 0.038744 ACCATGAAGAAGCCCCAGTG 59.961 55.000 0.00 0.00 0.00 3.66
1199 1288 0.669318 TTCTGATGTTCGTCGGTGGC 60.669 55.000 0.00 0.00 0.00 5.01
1354 1446 9.058424 GTAGCAAATACCGTTGTAATTTTCTTC 57.942 33.333 0.00 0.00 0.00 2.87
1364 1456 7.204496 TGTTTTATGTAGCAAATACCGTTGT 57.796 32.000 0.00 0.00 33.01 3.32
1393 1485 9.620259 AAGCCTTATATTAAGAAACTGAGGAAG 57.380 33.333 0.00 0.00 0.00 3.46
1394 1486 9.975218 AAAGCCTTATATTAAGAAACTGAGGAA 57.025 29.630 0.00 0.00 0.00 3.36
1395 1487 9.975218 AAAAGCCTTATATTAAGAAACTGAGGA 57.025 29.630 0.00 0.00 0.00 3.71
1424 1516 9.820229 CGAATGTAGTCTCTATAGTGAAATCTC 57.180 37.037 6.09 0.00 0.00 2.75
1425 1517 8.788806 CCGAATGTAGTCTCTATAGTGAAATCT 58.211 37.037 6.09 3.06 0.00 2.40
1426 1518 8.784994 TCCGAATGTAGTCTCTATAGTGAAATC 58.215 37.037 6.09 1.57 0.00 2.17
1427 1519 8.693120 TCCGAATGTAGTCTCTATAGTGAAAT 57.307 34.615 6.09 1.90 0.00 2.17
1428 1520 8.568794 CATCCGAATGTAGTCTCTATAGTGAAA 58.431 37.037 6.09 0.00 0.00 2.69
1429 1521 7.720074 ACATCCGAATGTAGTCTCTATAGTGAA 59.280 37.037 6.09 0.00 44.38 3.18
1430 1522 7.225011 ACATCCGAATGTAGTCTCTATAGTGA 58.775 38.462 0.00 0.00 44.38 3.41
1431 1523 7.441890 ACATCCGAATGTAGTCTCTATAGTG 57.558 40.000 0.00 0.00 44.38 2.74
1445 1537 5.250235 AGGCGTCTATATACATCCGAATG 57.750 43.478 0.00 0.00 38.93 2.67
1446 1538 5.916661 AAGGCGTCTATATACATCCGAAT 57.083 39.130 0.00 0.00 0.00 3.34
1447 1539 5.717078 AAAGGCGTCTATATACATCCGAA 57.283 39.130 0.00 0.00 0.00 4.30
1448 1540 5.717078 AAAAGGCGTCTATATACATCCGA 57.283 39.130 0.00 0.00 0.00 4.55
1449 1541 7.411588 GCTTTAAAAGGCGTCTATATACATCCG 60.412 40.741 0.00 0.00 0.00 4.18
1450 1542 7.386848 TGCTTTAAAAGGCGTCTATATACATCC 59.613 37.037 0.00 0.00 0.00 3.51
1451 1543 8.306680 TGCTTTAAAAGGCGTCTATATACATC 57.693 34.615 0.00 0.00 0.00 3.06
1452 1544 8.848474 ATGCTTTAAAAGGCGTCTATATACAT 57.152 30.769 0.00 0.00 0.00 2.29
1453 1545 9.419297 CTATGCTTTAAAAGGCGTCTATATACA 57.581 33.333 0.00 0.00 0.00 2.29
1454 1546 9.635520 TCTATGCTTTAAAAGGCGTCTATATAC 57.364 33.333 0.00 0.00 0.00 1.47
1456 1548 9.726438 AATCTATGCTTTAAAAGGCGTCTATAT 57.274 29.630 0.00 0.00 0.00 0.86
1457 1549 9.204570 GAATCTATGCTTTAAAAGGCGTCTATA 57.795 33.333 0.00 0.00 0.00 1.31
1458 1550 7.715249 TGAATCTATGCTTTAAAAGGCGTCTAT 59.285 33.333 0.00 0.00 0.00 1.98
1459 1551 7.011109 GTGAATCTATGCTTTAAAAGGCGTCTA 59.989 37.037 0.00 0.00 0.00 2.59
1460 1552 5.880332 TGAATCTATGCTTTAAAAGGCGTCT 59.120 36.000 0.01 0.00 0.00 4.18
1461 1553 5.965918 GTGAATCTATGCTTTAAAAGGCGTC 59.034 40.000 0.01 0.00 0.00 5.19
1462 1554 5.648092 AGTGAATCTATGCTTTAAAAGGCGT 59.352 36.000 1.34 1.34 0.00 5.68
1463 1555 6.124088 AGTGAATCTATGCTTTAAAAGGCG 57.876 37.500 0.00 0.00 0.00 5.52
1464 1556 7.088589 TGAGTGAATCTATGCTTTAAAAGGC 57.911 36.000 0.00 0.00 0.00 4.35
1468 1560 9.357652 GCAAAATGAGTGAATCTATGCTTTAAA 57.642 29.630 0.00 0.00 0.00 1.52
1469 1561 8.742777 AGCAAAATGAGTGAATCTATGCTTTAA 58.257 29.630 0.00 0.00 0.00 1.52
1470 1562 8.284945 AGCAAAATGAGTGAATCTATGCTTTA 57.715 30.769 0.00 0.00 0.00 1.85
1471 1563 7.166691 AGCAAAATGAGTGAATCTATGCTTT 57.833 32.000 0.00 0.00 0.00 3.51
1472 1564 6.183360 GGAGCAAAATGAGTGAATCTATGCTT 60.183 38.462 0.00 0.00 0.00 3.91
1473 1565 5.298777 GGAGCAAAATGAGTGAATCTATGCT 59.701 40.000 0.00 0.00 0.00 3.79
1474 1566 5.517904 GGAGCAAAATGAGTGAATCTATGC 58.482 41.667 0.00 0.00 0.00 3.14
1475 1567 5.295292 ACGGAGCAAAATGAGTGAATCTATG 59.705 40.000 0.00 0.00 0.00 2.23
1476 1568 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
1477 1569 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1478 1570 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1479 1571 4.492570 CGTACGGAGCAAAATGAGTGAATC 60.493 45.833 7.57 0.00 0.00 2.52
1480 1572 3.370978 CGTACGGAGCAAAATGAGTGAAT 59.629 43.478 7.57 0.00 0.00 2.57
1481 1573 2.734606 CGTACGGAGCAAAATGAGTGAA 59.265 45.455 7.57 0.00 0.00 3.18
1482 1574 2.288579 ACGTACGGAGCAAAATGAGTGA 60.289 45.455 21.06 0.00 0.00 3.41
1483 1575 2.066262 ACGTACGGAGCAAAATGAGTG 58.934 47.619 21.06 0.00 0.00 3.51
1484 1576 2.450609 ACGTACGGAGCAAAATGAGT 57.549 45.000 21.06 0.00 0.00 3.41
1485 1577 3.508762 ACTACGTACGGAGCAAAATGAG 58.491 45.455 27.33 1.42 0.00 2.90
1486 1578 3.581024 ACTACGTACGGAGCAAAATGA 57.419 42.857 27.33 0.00 0.00 2.57
1487 1579 4.657075 AAACTACGTACGGAGCAAAATG 57.343 40.909 27.33 3.03 0.00 2.32
1488 1580 7.221452 CACTATAAACTACGTACGGAGCAAAAT 59.779 37.037 27.33 16.86 0.00 1.82
1489 1581 6.527722 CACTATAAACTACGTACGGAGCAAAA 59.472 38.462 27.33 10.89 0.00 2.44
1490 1582 6.029607 CACTATAAACTACGTACGGAGCAAA 58.970 40.000 27.33 12.74 0.00 3.68
1491 1583 5.353956 TCACTATAAACTACGTACGGAGCAA 59.646 40.000 27.33 13.11 0.00 3.91
1492 1584 4.875536 TCACTATAAACTACGTACGGAGCA 59.124 41.667 27.33 13.14 0.00 4.26
1493 1585 5.409643 TCACTATAAACTACGTACGGAGC 57.590 43.478 27.33 0.00 0.00 4.70
1494 1586 7.009568 ACTTCACTATAAACTACGTACGGAG 57.990 40.000 25.90 25.90 0.00 4.63
1495 1587 6.818644 AGACTTCACTATAAACTACGTACGGA 59.181 38.462 21.06 10.81 0.00 4.69
1496 1588 7.009568 AGACTTCACTATAAACTACGTACGG 57.990 40.000 21.06 5.00 0.00 4.02
1497 1589 7.904094 AGAGACTTCACTATAAACTACGTACG 58.096 38.462 15.01 15.01 0.00 3.67
1524 1616 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1525 1617 7.419865 CCCCTCCGTTCCTAAATATAAGTCTTT 60.420 40.741 0.00 0.00 0.00 2.52
1526 1618 6.042897 CCCCTCCGTTCCTAAATATAAGTCTT 59.957 42.308 0.00 0.00 0.00 3.01
1527 1619 5.543020 CCCCTCCGTTCCTAAATATAAGTCT 59.457 44.000 0.00 0.00 0.00 3.24
1528 1620 5.306419 ACCCCTCCGTTCCTAAATATAAGTC 59.694 44.000 0.00 0.00 0.00 3.01
1529 1621 5.222086 ACCCCTCCGTTCCTAAATATAAGT 58.778 41.667 0.00 0.00 0.00 2.24
1530 1622 5.820404 ACCCCTCCGTTCCTAAATATAAG 57.180 43.478 0.00 0.00 0.00 1.73
1531 1623 7.876978 ATAACCCCTCCGTTCCTAAATATAA 57.123 36.000 0.00 0.00 0.00 0.98
1532 1624 7.876978 AATAACCCCTCCGTTCCTAAATATA 57.123 36.000 0.00 0.00 0.00 0.86
1533 1625 6.775234 AATAACCCCTCCGTTCCTAAATAT 57.225 37.500 0.00 0.00 0.00 1.28
1534 1626 6.579850 AAATAACCCCTCCGTTCCTAAATA 57.420 37.500 0.00 0.00 0.00 1.40
1535 1627 5.461516 AAATAACCCCTCCGTTCCTAAAT 57.538 39.130 0.00 0.00 0.00 1.40
1536 1628 4.932911 AAATAACCCCTCCGTTCCTAAA 57.067 40.909 0.00 0.00 0.00 1.85
1537 1629 4.043184 ACAAAATAACCCCTCCGTTCCTAA 59.957 41.667 0.00 0.00 0.00 2.69
1538 1630 3.588396 ACAAAATAACCCCTCCGTTCCTA 59.412 43.478 0.00 0.00 0.00 2.94
1539 1631 2.377531 ACAAAATAACCCCTCCGTTCCT 59.622 45.455 0.00 0.00 0.00 3.36
1540 1632 2.799017 ACAAAATAACCCCTCCGTTCC 58.201 47.619 0.00 0.00 0.00 3.62
1541 1633 5.005740 ACTAACAAAATAACCCCTCCGTTC 58.994 41.667 0.00 0.00 0.00 3.95
1542 1634 4.989277 ACTAACAAAATAACCCCTCCGTT 58.011 39.130 0.00 0.00 0.00 4.44
1543 1635 4.645863 ACTAACAAAATAACCCCTCCGT 57.354 40.909 0.00 0.00 0.00 4.69
1544 1636 7.451501 TTTAACTAACAAAATAACCCCTCCG 57.548 36.000 0.00 0.00 0.00 4.63
1625 1717 6.927416 TCTAGCGAATTGTTTCCTTGTACTA 58.073 36.000 0.00 0.00 0.00 1.82
1686 1778 3.565482 CACCCCATGATTAATCACCTTCG 59.435 47.826 20.19 9.47 40.03 3.79
1811 1903 4.715527 AGAGACCTGTTCCAATACGTAC 57.284 45.455 0.00 0.00 0.00 3.67
1883 1975 1.604278 GTGAAACTCTGGGTGAGCAAC 59.396 52.381 0.00 0.00 46.41 4.17
1969 2061 6.135400 GCTTTTGCAACATCCAAACAATAAC 58.865 36.000 0.00 0.00 46.58 1.89
2079 2171 2.363018 CCAGGCTCTCGGAGACCA 60.363 66.667 21.00 0.00 38.74 4.02
2104 2196 1.298157 CTTCAGAAATGCGGCCACGA 61.298 55.000 2.24 0.00 44.60 4.35
2224 2316 1.153667 GAGCAGAGTGAGAAGGCCG 60.154 63.158 0.00 0.00 0.00 6.13
2395 2487 7.299246 ACAGGTACTAAGAGCTTCTGTTTTA 57.701 36.000 0.00 0.00 36.02 1.52
2456 2548 1.162698 CTCACAATCTGCACCCACAG 58.837 55.000 0.00 0.00 39.12 3.66
2596 2688 1.687612 CTGGGGGTCATTCTGTGCT 59.312 57.895 0.00 0.00 0.00 4.40
2741 2833 4.973168 TCAGCCTCTGTTGAATTGTTAGT 58.027 39.130 0.00 0.00 32.61 2.24
2899 2992 2.740714 GCTAGCGCTTGTCCCAACG 61.741 63.158 18.68 0.00 0.00 4.10
2954 6431 2.086869 CACCAAATCTGACCAAGCGAT 58.913 47.619 0.00 0.00 0.00 4.58
2959 6436 2.158475 AGGCTTCACCAAATCTGACCAA 60.158 45.455 0.00 0.00 43.14 3.67
3014 6491 1.906824 TCCACTGACCGACCCACTC 60.907 63.158 0.00 0.00 0.00 3.51
3022 6499 5.263968 AGTAGATTATTGTCCACTGACCG 57.736 43.478 0.00 0.00 41.01 4.79
3064 6541 7.684529 CCAGTGAATAATATCCCTAAAGCTCT 58.315 38.462 0.00 0.00 0.00 4.09
3092 6569 3.827722 AGCACCAACAAAGGTTAAGCTA 58.172 40.909 7.76 0.00 40.77 3.32
3097 6574 4.951094 ACAAACTAGCACCAACAAAGGTTA 59.049 37.500 0.00 0.00 40.77 2.85
3101 6578 3.380004 TCCACAAACTAGCACCAACAAAG 59.620 43.478 0.00 0.00 0.00 2.77
3183 6660 4.976731 CAGAAATCTGCTCTGCATATTTGC 59.023 41.667 16.64 0.61 42.46 3.68
3193 6670 3.667497 TCACGTTCAGAAATCTGCTCT 57.333 42.857 5.53 0.00 43.46 4.09
3231 6708 8.918961 TTCAAAAACACGACATAAGAAACAAT 57.081 26.923 0.00 0.00 0.00 2.71
3247 6724 4.799678 TGCTGTCTTCGTTTTCAAAAACA 58.200 34.783 16.22 3.78 46.52 2.83
3267 6745 3.297472 CATGAGCGATGAAACATGATGC 58.703 45.455 0.00 0.00 41.45 3.91
3351 6830 9.509855 GTTAAAACACACACACATGAATTTAGA 57.490 29.630 0.00 0.00 0.00 2.10
3352 6831 9.295214 TGTTAAAACACACACACATGAATTTAG 57.705 29.630 0.00 0.00 33.17 1.85
3353 6832 9.809096 ATGTTAAAACACACACACATGAATTTA 57.191 25.926 0.00 0.00 42.51 1.40
3354 6833 8.715191 ATGTTAAAACACACACACATGAATTT 57.285 26.923 0.00 0.00 42.51 1.82
3355 6834 9.809096 TTATGTTAAAACACACACACATGAATT 57.191 25.926 0.00 0.00 42.51 2.17
3356 6835 9.809096 TTTATGTTAAAACACACACACATGAAT 57.191 25.926 0.00 0.00 42.51 2.57
3357 6836 9.295214 CTTTATGTTAAAACACACACACATGAA 57.705 29.630 0.00 0.00 42.51 2.57
3358 6837 8.678199 TCTTTATGTTAAAACACACACACATGA 58.322 29.630 0.00 0.00 42.51 3.07
3359 6838 8.848948 TCTTTATGTTAAAACACACACACATG 57.151 30.769 0.00 0.00 42.51 3.21
3361 6840 9.862371 AAATCTTTATGTTAAAACACACACACA 57.138 25.926 0.00 0.00 42.51 3.72
3389 6868 9.384764 GTCTCTGTAAAATGCTCCTAAGTTAAT 57.615 33.333 0.00 0.00 0.00 1.40
3390 6869 8.372459 TGTCTCTGTAAAATGCTCCTAAGTTAA 58.628 33.333 0.00 0.00 0.00 2.01
3391 6870 7.903145 TGTCTCTGTAAAATGCTCCTAAGTTA 58.097 34.615 0.00 0.00 0.00 2.24
3392 6871 6.769512 TGTCTCTGTAAAATGCTCCTAAGTT 58.230 36.000 0.00 0.00 0.00 2.66
3393 6872 6.360370 TGTCTCTGTAAAATGCTCCTAAGT 57.640 37.500 0.00 0.00 0.00 2.24
3394 6873 6.183360 GCTTGTCTCTGTAAAATGCTCCTAAG 60.183 42.308 0.00 0.00 0.00 2.18
3395 6874 5.643777 GCTTGTCTCTGTAAAATGCTCCTAA 59.356 40.000 0.00 0.00 0.00 2.69
3396 6875 5.178797 GCTTGTCTCTGTAAAATGCTCCTA 58.821 41.667 0.00 0.00 0.00 2.94
3397 6876 4.006319 GCTTGTCTCTGTAAAATGCTCCT 58.994 43.478 0.00 0.00 0.00 3.69
3398 6877 3.181516 CGCTTGTCTCTGTAAAATGCTCC 60.182 47.826 0.00 0.00 0.00 4.70
3399 6878 3.433615 ACGCTTGTCTCTGTAAAATGCTC 59.566 43.478 0.00 0.00 0.00 4.26
3400 6879 3.187227 CACGCTTGTCTCTGTAAAATGCT 59.813 43.478 0.00 0.00 0.00 3.79
3401 6880 3.186409 TCACGCTTGTCTCTGTAAAATGC 59.814 43.478 0.00 0.00 0.00 3.56
3402 6881 4.990543 TCACGCTTGTCTCTGTAAAATG 57.009 40.909 0.00 0.00 0.00 2.32
3403 6882 5.049405 CCTTTCACGCTTGTCTCTGTAAAAT 60.049 40.000 0.00 0.00 0.00 1.82
3404 6883 4.272504 CCTTTCACGCTTGTCTCTGTAAAA 59.727 41.667 0.00 0.00 0.00 1.52
3405 6884 3.807622 CCTTTCACGCTTGTCTCTGTAAA 59.192 43.478 0.00 0.00 0.00 2.01
3406 6885 3.069016 TCCTTTCACGCTTGTCTCTGTAA 59.931 43.478 0.00 0.00 0.00 2.41
3407 6886 2.626266 TCCTTTCACGCTTGTCTCTGTA 59.374 45.455 0.00 0.00 0.00 2.74
3408 6887 1.412710 TCCTTTCACGCTTGTCTCTGT 59.587 47.619 0.00 0.00 0.00 3.41
3409 6888 2.154854 TCCTTTCACGCTTGTCTCTG 57.845 50.000 0.00 0.00 0.00 3.35
3410 6889 2.760374 CTTCCTTTCACGCTTGTCTCT 58.240 47.619 0.00 0.00 0.00 3.10
3411 6890 1.195674 GCTTCCTTTCACGCTTGTCTC 59.804 52.381 0.00 0.00 0.00 3.36
3412 6891 1.230324 GCTTCCTTTCACGCTTGTCT 58.770 50.000 0.00 0.00 0.00 3.41
3413 6892 0.944386 TGCTTCCTTTCACGCTTGTC 59.056 50.000 0.00 0.00 0.00 3.18
3414 6893 1.537202 GATGCTTCCTTTCACGCTTGT 59.463 47.619 0.00 0.00 0.00 3.16
3415 6894 1.808945 AGATGCTTCCTTTCACGCTTG 59.191 47.619 0.00 0.00 0.00 4.01
3416 6895 2.191128 AGATGCTTCCTTTCACGCTT 57.809 45.000 0.00 0.00 0.00 4.68
3417 6896 3.334583 TTAGATGCTTCCTTTCACGCT 57.665 42.857 0.00 0.00 0.00 5.07
3418 6897 4.622701 ATTTAGATGCTTCCTTTCACGC 57.377 40.909 0.00 0.00 0.00 5.34
3419 6898 6.182039 TGAATTTAGATGCTTCCTTTCACG 57.818 37.500 0.00 0.00 0.00 4.35
3420 6899 7.487189 CACATGAATTTAGATGCTTCCTTTCAC 59.513 37.037 0.00 0.00 0.00 3.18
3421 6900 7.363181 CCACATGAATTTAGATGCTTCCTTTCA 60.363 37.037 0.00 2.17 0.00 2.69
3422 6901 6.976925 CCACATGAATTTAGATGCTTCCTTTC 59.023 38.462 0.00 0.00 0.00 2.62
3423 6902 6.127253 CCCACATGAATTTAGATGCTTCCTTT 60.127 38.462 0.00 0.00 0.00 3.11
3424 6903 5.361857 CCCACATGAATTTAGATGCTTCCTT 59.638 40.000 0.00 0.00 0.00 3.36
3425 6904 4.891756 CCCACATGAATTTAGATGCTTCCT 59.108 41.667 0.00 0.00 0.00 3.36
3426 6905 4.889409 TCCCACATGAATTTAGATGCTTCC 59.111 41.667 0.00 0.00 0.00 3.46
3427 6906 6.645790 ATCCCACATGAATTTAGATGCTTC 57.354 37.500 0.00 0.00 0.00 3.86
3428 6907 6.183360 CCAATCCCACATGAATTTAGATGCTT 60.183 38.462 0.00 0.00 0.00 3.91
3429 6908 5.303589 CCAATCCCACATGAATTTAGATGCT 59.696 40.000 0.00 0.00 0.00 3.79
3430 6909 5.069516 ACCAATCCCACATGAATTTAGATGC 59.930 40.000 0.00 0.00 0.00 3.91
3431 6910 6.321945 TCACCAATCCCACATGAATTTAGATG 59.678 38.462 0.00 0.00 0.00 2.90
3438 6917 4.212716 CATCTCACCAATCCCACATGAAT 58.787 43.478 0.00 0.00 0.00 2.57
3449 6928 2.821969 GCACTTGTTCCATCTCACCAAT 59.178 45.455 0.00 0.00 0.00 3.16
3467 6946 6.419413 CGAGAGAACAATTCTATCCTTAGCAC 59.581 42.308 7.44 0.00 43.32 4.40
3470 6949 6.041069 ACCCGAGAGAACAATTCTATCCTTAG 59.959 42.308 7.44 0.00 43.32 2.18
3471 6950 5.897824 ACCCGAGAGAACAATTCTATCCTTA 59.102 40.000 7.44 0.00 43.32 2.69
3472 6951 4.717280 ACCCGAGAGAACAATTCTATCCTT 59.283 41.667 7.44 0.00 43.32 3.36
3473 6952 4.290942 ACCCGAGAGAACAATTCTATCCT 58.709 43.478 7.44 0.00 43.32 3.24
3474 6953 4.674281 ACCCGAGAGAACAATTCTATCC 57.326 45.455 7.44 0.00 43.32 2.59
3475 6954 6.675728 GCAAAACCCGAGAGAACAATTCTATC 60.676 42.308 3.61 3.61 42.93 2.08
3476 6955 5.123979 GCAAAACCCGAGAGAACAATTCTAT 59.876 40.000 0.00 0.00 40.87 1.98
3477 6956 4.454504 GCAAAACCCGAGAGAACAATTCTA 59.545 41.667 0.00 0.00 40.87 2.10
3478 6957 3.253432 GCAAAACCCGAGAGAACAATTCT 59.747 43.478 0.00 0.00 44.21 2.40
3479 6958 3.004315 TGCAAAACCCGAGAGAACAATTC 59.996 43.478 0.00 0.00 0.00 2.17
3480 6959 2.955660 TGCAAAACCCGAGAGAACAATT 59.044 40.909 0.00 0.00 0.00 2.32
3481 6960 2.554032 CTGCAAAACCCGAGAGAACAAT 59.446 45.455 0.00 0.00 0.00 2.71
3482 6961 1.946768 CTGCAAAACCCGAGAGAACAA 59.053 47.619 0.00 0.00 0.00 2.83
3483 6962 1.134220 ACTGCAAAACCCGAGAGAACA 60.134 47.619 0.00 0.00 0.00 3.18
3484 6963 1.264288 CACTGCAAAACCCGAGAGAAC 59.736 52.381 0.00 0.00 0.00 3.01
3485 6964 1.140052 TCACTGCAAAACCCGAGAGAA 59.860 47.619 0.00 0.00 0.00 2.87
3486 6965 0.756294 TCACTGCAAAACCCGAGAGA 59.244 50.000 0.00 0.00 0.00 3.10
3487 6966 1.466167 CATCACTGCAAAACCCGAGAG 59.534 52.381 0.00 0.00 0.00 3.20
3488 6967 1.202758 ACATCACTGCAAAACCCGAGA 60.203 47.619 0.00 0.00 0.00 4.04
3489 6968 1.069022 CACATCACTGCAAAACCCGAG 60.069 52.381 0.00 0.00 0.00 4.63
3490 6969 0.950836 CACATCACTGCAAAACCCGA 59.049 50.000 0.00 0.00 0.00 5.14
3491 6970 0.664166 GCACATCACTGCAAAACCCG 60.664 55.000 0.00 0.00 37.11 5.28
3492 6971 0.664166 CGCACATCACTGCAAAACCC 60.664 55.000 0.00 0.00 36.94 4.11
3493 6972 0.310543 TCGCACATCACTGCAAAACC 59.689 50.000 0.00 0.00 36.94 3.27
3494 6973 2.336554 ATCGCACATCACTGCAAAAC 57.663 45.000 0.00 0.00 36.94 2.43
3495 6974 2.665245 CGAATCGCACATCACTGCAAAA 60.665 45.455 0.00 0.00 36.94 2.44
3496 6975 1.136000 CGAATCGCACATCACTGCAAA 60.136 47.619 0.00 0.00 36.94 3.68
3497 6976 0.443478 CGAATCGCACATCACTGCAA 59.557 50.000 0.00 0.00 36.94 4.08
3498 6977 0.389687 TCGAATCGCACATCACTGCA 60.390 50.000 0.00 0.00 36.94 4.41
3499 6978 0.721154 TTCGAATCGCACATCACTGC 59.279 50.000 0.00 0.00 0.00 4.40
3500 6979 2.157474 TGTTTCGAATCGCACATCACTG 59.843 45.455 0.00 0.00 0.00 3.66
3501 6980 2.412870 TGTTTCGAATCGCACATCACT 58.587 42.857 0.00 0.00 0.00 3.41
3502 6981 2.873170 TGTTTCGAATCGCACATCAC 57.127 45.000 0.00 0.00 0.00 3.06
3503 6982 2.805671 ACTTGTTTCGAATCGCACATCA 59.194 40.909 0.00 0.00 0.00 3.07
3504 6983 3.155998 CACTTGTTTCGAATCGCACATC 58.844 45.455 0.00 0.00 0.00 3.06
3505 6984 2.665519 GCACTTGTTTCGAATCGCACAT 60.666 45.455 0.00 0.00 0.00 3.21
3506 6985 1.333702 GCACTTGTTTCGAATCGCACA 60.334 47.619 0.00 0.16 0.00 4.57
3507 6986 1.069906 AGCACTTGTTTCGAATCGCAC 60.070 47.619 0.00 0.00 0.00 5.34
3508 6987 1.225855 AGCACTTGTTTCGAATCGCA 58.774 45.000 0.00 0.00 0.00 5.10
3509 6988 3.408150 CTTAGCACTTGTTTCGAATCGC 58.592 45.455 0.00 0.00 0.00 4.58
3510 6989 3.678072 TCCTTAGCACTTGTTTCGAATCG 59.322 43.478 0.00 0.00 0.00 3.34
3511 6990 5.803020 ATCCTTAGCACTTGTTTCGAATC 57.197 39.130 0.00 0.00 0.00 2.52
3512 6991 6.640518 TCTATCCTTAGCACTTGTTTCGAAT 58.359 36.000 0.00 0.00 0.00 3.34
3513 6992 6.032956 TCTATCCTTAGCACTTGTTTCGAA 57.967 37.500 0.00 0.00 0.00 3.71
3514 6993 5.654603 TCTATCCTTAGCACTTGTTTCGA 57.345 39.130 0.00 0.00 0.00 3.71
3515 6994 6.910536 ATTCTATCCTTAGCACTTGTTTCG 57.089 37.500 0.00 0.00 0.00 3.46
3516 6995 8.045176 ACAATTCTATCCTTAGCACTTGTTTC 57.955 34.615 0.00 0.00 0.00 2.78
3517 6996 8.409358 AACAATTCTATCCTTAGCACTTGTTT 57.591 30.769 0.00 0.00 32.83 2.83
3631 7111 0.473755 TCACAGCTGCAAAAGGGAGA 59.526 50.000 15.27 0.00 37.05 3.71
3632 7112 1.000938 GTTCACAGCTGCAAAAGGGAG 60.001 52.381 15.27 0.00 38.13 4.30
3666 7146 6.697019 GCACACTTAACTGTCAATTGTCAATT 59.303 34.615 4.91 4.91 0.00 2.32
3681 7161 6.024049 GTCAATTATGAGCAGCACACTTAAC 58.976 40.000 0.00 0.00 35.88 2.01
3703 7183 5.112686 CAACCCTTGCTTAGACTCATAGTC 58.887 45.833 0.00 0.00 45.38 2.59
3728 7208 2.496899 TCAGGGGAGAAAATGAGTGC 57.503 50.000 0.00 0.00 0.00 4.40
3739 7220 0.266152 ACCAGGGTAGATCAGGGGAG 59.734 60.000 0.00 0.00 0.00 4.30
3740 7221 0.722676 AACCAGGGTAGATCAGGGGA 59.277 55.000 0.00 0.00 0.00 4.81
3747 7228 4.202803 GGAGGGAGTATAACCAGGGTAGAT 60.203 50.000 0.00 0.00 0.00 1.98
3753 7234 2.083628 ACGGAGGGAGTATAACCAGG 57.916 55.000 0.00 0.00 0.00 4.45
3763 7244 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3764 7245 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3765 7246 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3766 7247 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.