Multiple sequence alignment - TraesCS3A01G315200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G315200 chr3A 100.000 2415 0 0 1 2415 556368075 556365661 0.000000e+00 4460
1 TraesCS3A01G315200 chr3A 98.077 156 2 1 2195 2349 142927731 142927576 1.100000e-68 270
2 TraesCS3A01G315200 chr3A 84.713 157 12 8 969 1115 556678411 556678565 1.930000e-31 147
3 TraesCS3A01G315200 chr3D 89.633 791 48 14 16 791 429622735 429623506 0.000000e+00 976
4 TraesCS3A01G315200 chr3D 88.174 575 46 10 1136 1703 429623989 429624548 0.000000e+00 665
5 TraesCS3A01G315200 chr3D 95.172 290 14 0 1911 2200 584170875 584171164 2.190000e-125 459
6 TraesCS3A01G315200 chr3D 89.189 333 23 9 793 1125 429623612 429623931 1.040000e-108 403
7 TraesCS3A01G315200 chr3B 91.781 657 36 8 129 775 561548019 561548667 0.000000e+00 898
8 TraesCS3A01G315200 chr3B 87.570 539 39 11 1181 1703 561563190 561563716 1.240000e-167 599
9 TraesCS3A01G315200 chr3B 85.545 422 31 16 783 1178 561550129 561550546 4.800000e-112 414
10 TraesCS3A01G315200 chr3B 97.403 154 4 0 2196 2349 828516430 828516583 1.840000e-66 263
11 TraesCS3A01G315200 chr3B 95.152 165 6 1 2187 2349 172696264 172696428 2.380000e-65 259
12 TraesCS3A01G315200 chr3B 97.015 67 2 0 2349 2415 65268520 65268454 1.960000e-21 113
13 TraesCS3A01G315200 chr4A 95.862 290 12 0 1911 2200 30348886 30348597 1.010000e-128 470
14 TraesCS3A01G315200 chr4A 94.444 288 16 0 1913 2200 30346571 30346284 6.130000e-121 444
15 TraesCS3A01G315200 chr7A 95.517 290 13 0 1911 2200 42916167 42915878 4.700000e-127 464
16 TraesCS3A01G315200 chr7A 95.775 71 2 1 2346 2415 611895518 611895588 1.960000e-21 113
17 TraesCS3A01G315200 chr2A 94.483 290 16 0 1911 2200 603663106 603662817 4.740000e-122 448
18 TraesCS3A01G315200 chr2A 97.452 157 3 1 2194 2349 174870624 174870468 1.420000e-67 267
19 TraesCS3A01G315200 chr2A 96.815 157 3 1 2195 2349 734926994 734927150 6.620000e-66 261
20 TraesCS3A01G315200 chr2A 97.059 68 2 0 2348 2415 718251794 718251861 5.460000e-22 115
21 TraesCS3A01G315200 chr5A 94.138 290 17 0 1911 2200 31624497 31624786 2.200000e-120 442
22 TraesCS3A01G315200 chr5A 94.138 290 17 0 1911 2200 31742481 31742770 2.200000e-120 442
23 TraesCS3A01G315200 chr5A 94.138 290 17 0 1911 2200 31831688 31831977 2.200000e-120 442
24 TraesCS3A01G315200 chr5A 93.793 290 18 0 1911 2200 31931774 31932063 1.030000e-118 436
25 TraesCS3A01G315200 chr5A 97.059 68 2 0 2348 2415 681379971 681379904 5.460000e-22 115
26 TraesCS3A01G315200 chrUn 96.835 158 3 1 2194 2349 8585625 8585782 1.840000e-66 263
27 TraesCS3A01G315200 chrUn 96.835 158 3 1 2194 2349 305850544 305850387 1.840000e-66 263
28 TraesCS3A01G315200 chrUn 96.835 158 3 1 2194 2349 305854815 305854658 1.840000e-66 263
29 TraesCS3A01G315200 chrUn 97.015 67 2 0 2349 2415 77422106 77422040 1.960000e-21 113
30 TraesCS3A01G315200 chrUn 97.015 67 2 0 2349 2415 341147076 341147010 1.960000e-21 113
31 TraesCS3A01G315200 chrUn 97.015 67 2 0 2349 2415 352588556 352588622 1.960000e-21 113
32 TraesCS3A01G315200 chr6B 95.706 163 6 1 2182 2343 100963747 100963909 6.620000e-66 261
33 TraesCS3A01G315200 chr7B 95.775 71 2 1 2345 2414 641462304 641462234 1.960000e-21 113
34 TraesCS3A01G315200 chr1A 97.015 67 2 0 2349 2415 11308361 11308427 1.960000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G315200 chr3A 556365661 556368075 2414 True 4460.000000 4460 100.000000 1 2415 1 chr3A.!!$R2 2414
1 TraesCS3A01G315200 chr3D 429622735 429624548 1813 False 681.333333 976 88.998667 16 1703 3 chr3D.!!$F2 1687
2 TraesCS3A01G315200 chr3B 561548019 561550546 2527 False 656.000000 898 88.663000 129 1178 2 chr3B.!!$F4 1049
3 TraesCS3A01G315200 chr3B 561563190 561563716 526 False 599.000000 599 87.570000 1181 1703 1 chr3B.!!$F2 522
4 TraesCS3A01G315200 chr4A 30346284 30348886 2602 True 457.000000 470 95.153000 1911 2200 2 chr4A.!!$R1 289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.03254 GCCTTCAAAGCACAACCCTG 59.967 55.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 3420 0.030908 CTCAATCCTACGCCTCGACC 59.969 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.277857 CTTAGTGATTTCGGTCCCATACT 57.722 43.478 0.00 0.00 0.00 2.12
23 24 3.543680 AGTGATTTCGGTCCCATACTG 57.456 47.619 0.00 0.00 35.61 2.74
24 25 3.104512 AGTGATTTCGGTCCCATACTGA 58.895 45.455 0.00 0.00 41.93 3.41
31 32 2.574369 TCGGTCCCATACTGAACCAAAT 59.426 45.455 0.00 0.00 40.65 2.32
39 40 5.364778 CCATACTGAACCAAATATCCGTGA 58.635 41.667 0.00 0.00 0.00 4.35
63 64 3.294493 GCCGGCCTTCAAAGCACA 61.294 61.111 18.11 0.00 0.00 4.57
69 70 0.032540 GCCTTCAAAGCACAACCCTG 59.967 55.000 0.00 0.00 0.00 4.45
70 71 0.032540 CCTTCAAAGCACAACCCTGC 59.967 55.000 0.00 0.00 37.44 4.85
71 72 0.746063 CTTCAAAGCACAACCCTGCA 59.254 50.000 0.00 0.00 39.86 4.41
72 73 0.746063 TTCAAAGCACAACCCTGCAG 59.254 50.000 6.78 6.78 39.86 4.41
73 74 1.300388 CAAAGCACAACCCTGCAGC 60.300 57.895 8.66 0.00 39.86 5.25
74 75 2.848858 AAAGCACAACCCTGCAGCG 61.849 57.895 8.66 1.40 39.86 5.18
75 76 3.772853 AAGCACAACCCTGCAGCGA 62.773 57.895 8.66 0.00 39.86 4.93
76 77 3.286751 GCACAACCCTGCAGCGAA 61.287 61.111 8.66 0.00 37.11 4.70
77 78 2.629656 GCACAACCCTGCAGCGAAT 61.630 57.895 8.66 0.00 37.11 3.34
78 79 1.305219 GCACAACCCTGCAGCGAATA 61.305 55.000 8.66 0.00 37.11 1.75
79 80 0.447801 CACAACCCTGCAGCGAATAC 59.552 55.000 8.66 0.00 0.00 1.89
83 84 1.069765 CCCTGCAGCGAATACGGAT 59.930 57.895 8.66 0.00 40.15 4.18
106 107 3.084039 GACAAATGCTCACCTCATGGAA 58.916 45.455 0.00 0.00 37.04 3.53
108 109 2.426024 CAAATGCTCACCTCATGGAAGG 59.574 50.000 0.00 0.00 42.55 3.46
109 110 0.549950 ATGCTCACCTCATGGAAGGG 59.450 55.000 5.50 0.35 41.04 3.95
110 111 1.452833 GCTCACCTCATGGAAGGGC 60.453 63.158 5.50 0.00 41.04 5.19
111 112 1.919600 GCTCACCTCATGGAAGGGCT 61.920 60.000 5.50 0.00 41.04 5.19
125 132 4.154347 GGCTGCGAGAGGACCCAG 62.154 72.222 0.00 0.00 0.00 4.45
156 165 0.885596 TTACTTTGTTGGACCGGGCG 60.886 55.000 6.32 0.00 0.00 6.13
292 310 7.644157 GGCTATTTGATACGATTTTGTTCCTTC 59.356 37.037 0.00 0.00 0.00 3.46
448 466 1.685517 TCATCTGCTAAGCGCTCATCT 59.314 47.619 12.06 0.00 40.11 2.90
503 521 1.960689 TCATGTGAGAAGACCGTGACA 59.039 47.619 0.00 0.00 0.00 3.58
519 538 4.151070 CGTGACATCTGATTTGTTTTCCG 58.849 43.478 0.00 0.00 0.00 4.30
525 544 5.241506 ACATCTGATTTGTTTTCCGTGTGAT 59.758 36.000 0.00 0.00 0.00 3.06
564 583 1.672030 GGCTTGCCATTTTGCCACC 60.672 57.895 6.79 0.00 44.34 4.61
654 681 6.016777 AGGCAGTCTAACTCAAATTTGTGAAG 60.017 38.462 23.24 18.60 0.00 3.02
668 695 1.202830 TGTGAAGTGTTTACCGGCCAT 60.203 47.619 0.00 0.00 0.00 4.40
744 771 4.260497 GGAGTCGTTCCACAAACAAGTTAC 60.260 45.833 4.22 0.00 46.01 2.50
777 804 1.474077 GCCAGCTTTGGTGTTATCCTG 59.526 52.381 0.00 0.00 0.00 3.86
784 2265 5.882557 AGCTTTGGTGTTATCCTGAACATAG 59.117 40.000 0.00 0.00 41.21 2.23
787 2268 5.097742 TGGTGTTATCCTGAACATAGGTG 57.902 43.478 0.00 0.00 41.21 4.00
861 2342 4.809426 TCACCTCTTGACTTTCGAGTTTTC 59.191 41.667 0.00 0.00 0.00 2.29
865 2346 5.334414 CCTCTTGACTTTCGAGTTTTCATGG 60.334 44.000 0.00 0.00 0.00 3.66
912 2393 1.473434 GGGCTAACCTTCTCATCACCG 60.473 57.143 0.00 0.00 35.85 4.94
915 2396 2.271800 CTAACCTTCTCATCACCGCAC 58.728 52.381 0.00 0.00 0.00 5.34
931 2412 1.391157 GCACCACCACCAAAGCAGAA 61.391 55.000 0.00 0.00 0.00 3.02
934 2415 1.463553 CCACCACCAAAGCAGAACCC 61.464 60.000 0.00 0.00 0.00 4.11
944 2425 2.656947 AGCAGAACCCTAACAAGCAA 57.343 45.000 0.00 0.00 0.00 3.91
947 2428 2.226674 GCAGAACCCTAACAAGCAACTC 59.773 50.000 0.00 0.00 0.00 3.01
961 2442 1.941325 CAACTCTCCACTAATCCGCC 58.059 55.000 0.00 0.00 0.00 6.13
981 2462 1.795286 CTATCATTCCTTCCTTCGCGC 59.205 52.381 0.00 0.00 0.00 6.86
986 2467 2.511600 CCTTCCTTCGCGCCGATT 60.512 61.111 0.00 0.00 35.23 3.34
993 2481 2.563086 CTTCGCGCCGATTGACAACC 62.563 60.000 0.00 0.00 35.23 3.77
1020 2508 2.048127 GCGAAGAACCACGGAGCT 60.048 61.111 0.00 0.00 0.00 4.09
1118 2609 1.324718 CTGAACGAAGGTACGTGTCG 58.675 55.000 0.00 14.30 45.83 4.35
1121 2612 1.909532 GAACGAAGGTACGTGTCGATG 59.090 52.381 19.51 0.00 45.83 3.84
1125 2616 0.169672 AAGGTACGTGTCGATGGACG 59.830 55.000 11.60 11.60 46.49 4.79
1132 2674 0.524862 GTGTCGATGGACGTGTACCT 59.475 55.000 0.00 0.00 46.49 3.08
1147 2689 5.091431 CGTGTACCTTACTACTGCAACTAC 58.909 45.833 0.00 0.00 0.00 2.73
1159 2702 5.157940 ACTGCAACTACATCTTGATCTGT 57.842 39.130 0.00 0.00 0.00 3.41
1169 2712 8.268605 ACTACATCTTGATCTGTACTCTGACTA 58.731 37.037 0.00 0.00 0.00 2.59
1178 2721 4.001652 CTGTACTCTGACTACTGGAACGA 58.998 47.826 0.00 0.00 0.00 3.85
1291 2834 4.821589 CTGAAGGCGGGCGAGACC 62.822 72.222 0.00 0.00 37.93 3.85
1365 2908 3.499737 CCCCAACATCGACTGCGC 61.500 66.667 0.00 0.00 37.46 6.09
1419 2962 1.757306 CCTCCACTGCTTGACCAGT 59.243 57.895 0.00 0.00 46.47 4.00
1420 2963 0.321122 CCTCCACTGCTTGACCAGTC 60.321 60.000 0.00 0.00 43.85 3.51
1449 2996 2.961721 CCGTGCATCGATCACCGG 60.962 66.667 16.95 14.07 42.86 5.28
1455 3009 1.359117 CATCGATCACCGGTAGCGT 59.641 57.895 6.87 0.00 39.14 5.07
1464 3018 2.132762 CACCGGTAGCGTTATGAATCC 58.867 52.381 6.87 0.00 0.00 3.01
1468 3022 2.767505 GGTAGCGTTATGAATCCAGGG 58.232 52.381 0.00 0.00 0.00 4.45
1470 3024 0.474184 AGCGTTATGAATCCAGGGGG 59.526 55.000 0.00 0.00 0.00 5.40
1471 3025 0.182775 GCGTTATGAATCCAGGGGGT 59.817 55.000 0.00 0.00 34.93 4.95
1482 3038 2.284995 AGGGGGTGTGCTCTCCTC 60.285 66.667 6.81 2.63 0.00 3.71
1489 3045 1.066787 GGTGTGCTCTCCTCCTTGTAC 60.067 57.143 0.00 0.00 0.00 2.90
1521 3079 1.660575 GTGTGCTTGCTGCTTGCTG 60.661 57.895 15.63 0.00 43.37 4.41
1523 3081 2.910479 TGCTTGCTGCTTGCTGCT 60.910 55.556 21.38 0.00 43.37 4.24
1565 3123 2.783135 CTGCTTGGTGTTATCTGGTGT 58.217 47.619 0.00 0.00 0.00 4.16
1566 3124 2.485426 CTGCTTGGTGTTATCTGGTGTG 59.515 50.000 0.00 0.00 0.00 3.82
1567 3125 2.105649 TGCTTGGTGTTATCTGGTGTGA 59.894 45.455 0.00 0.00 0.00 3.58
1568 3126 3.146066 GCTTGGTGTTATCTGGTGTGAA 58.854 45.455 0.00 0.00 0.00 3.18
1569 3127 3.058224 GCTTGGTGTTATCTGGTGTGAAC 60.058 47.826 0.00 0.00 0.00 3.18
1570 3128 4.389374 CTTGGTGTTATCTGGTGTGAACT 58.611 43.478 0.00 0.00 0.00 3.01
1571 3129 4.002906 TGGTGTTATCTGGTGTGAACTC 57.997 45.455 0.00 0.00 0.00 3.01
1581 3139 2.965831 TGGTGTGAACTCTGAAGTAGCT 59.034 45.455 0.00 0.00 33.48 3.32
1584 3142 2.255316 GTGAACTCTGAAGTAGCTCGC 58.745 52.381 0.00 0.00 33.48 5.03
1606 3164 2.161808 CGGTGTGTGTTTGTTGTACCAA 59.838 45.455 0.00 0.00 0.00 3.67
1607 3165 3.503891 GGTGTGTGTTTGTTGTACCAAC 58.496 45.455 0.22 0.22 0.00 3.77
1608 3166 3.165124 GTGTGTGTTTGTTGTACCAACG 58.835 45.455 2.98 0.00 0.00 4.10
1609 3167 3.072211 TGTGTGTTTGTTGTACCAACGA 58.928 40.909 0.00 0.00 0.00 3.85
1614 3172 1.588674 TTGTTGTACCAACGAGCTGG 58.411 50.000 0.00 0.00 42.68 4.85
1635 3193 2.604914 GTCGTGCCTGATTATCAGTGTG 59.395 50.000 19.37 6.97 42.80 3.82
1641 3199 4.263462 TGCCTGATTATCAGTGTGTTTCCT 60.263 41.667 19.37 0.00 42.80 3.36
1644 3202 6.623767 GCCTGATTATCAGTGTGTTTCCTTTC 60.624 42.308 19.37 0.00 42.80 2.62
1649 3207 3.551846 TCAGTGTGTTTCCTTTCCTTCC 58.448 45.455 0.00 0.00 0.00 3.46
1652 3210 4.036852 CAGTGTGTTTCCTTTCCTTCCTTC 59.963 45.833 0.00 0.00 0.00 3.46
1674 3232 0.249699 TCAATTCGTCCGTGTGCTGT 60.250 50.000 0.00 0.00 0.00 4.40
1678 3236 3.337889 CGTCCGTGTGCTGTGGTG 61.338 66.667 0.00 0.00 0.00 4.17
1684 3242 0.879839 CGTGTGCTGTGGTGATGTGA 60.880 55.000 0.00 0.00 0.00 3.58
1687 3245 1.140652 TGTGCTGTGGTGATGTGAGAA 59.859 47.619 0.00 0.00 0.00 2.87
1688 3246 2.224597 TGTGCTGTGGTGATGTGAGAAT 60.225 45.455 0.00 0.00 0.00 2.40
1706 3265 5.117406 AGAATGGTCTCCAAATTACTCCC 57.883 43.478 0.00 0.00 36.95 4.30
1707 3266 4.790790 AGAATGGTCTCCAAATTACTCCCT 59.209 41.667 0.00 0.00 36.95 4.20
1708 3267 5.254032 AGAATGGTCTCCAAATTACTCCCTT 59.746 40.000 0.00 0.00 36.95 3.95
1709 3268 5.536497 ATGGTCTCCAAATTACTCCCTTT 57.464 39.130 0.00 0.00 36.95 3.11
1710 3269 4.662278 TGGTCTCCAAATTACTCCCTTTG 58.338 43.478 0.00 0.00 33.20 2.77
1711 3270 4.105697 TGGTCTCCAAATTACTCCCTTTGT 59.894 41.667 0.00 0.00 31.83 2.83
1712 3271 4.459337 GGTCTCCAAATTACTCCCTTTGTG 59.541 45.833 0.00 0.00 31.83 3.33
1713 3272 5.313712 GTCTCCAAATTACTCCCTTTGTGA 58.686 41.667 0.00 0.00 31.83 3.58
1714 3273 5.768164 GTCTCCAAATTACTCCCTTTGTGAA 59.232 40.000 0.00 0.00 31.83 3.18
1715 3274 6.264518 GTCTCCAAATTACTCCCTTTGTGAAA 59.735 38.462 0.00 0.00 31.83 2.69
1716 3275 6.836527 TCTCCAAATTACTCCCTTTGTGAAAA 59.163 34.615 0.00 0.00 31.83 2.29
1717 3276 7.343316 TCTCCAAATTACTCCCTTTGTGAAAAA 59.657 33.333 0.00 0.00 31.83 1.94
1754 3313 9.344309 GCGTTTAGATCATTAAGATAGAGTACC 57.656 37.037 0.00 0.00 37.00 3.34
1766 3325 9.976511 TTAAGATAGAGTACCAAATTACCATCG 57.023 33.333 0.00 0.00 0.00 3.84
1767 3326 7.598759 AGATAGAGTACCAAATTACCATCGT 57.401 36.000 0.00 0.00 0.00 3.73
1768 3327 8.019656 AGATAGAGTACCAAATTACCATCGTT 57.980 34.615 0.00 0.00 0.00 3.85
1769 3328 7.926555 AGATAGAGTACCAAATTACCATCGTTG 59.073 37.037 0.00 0.00 0.00 4.10
1770 3329 4.634443 AGAGTACCAAATTACCATCGTTGC 59.366 41.667 0.00 0.00 0.00 4.17
1771 3330 4.328536 AGTACCAAATTACCATCGTTGCA 58.671 39.130 0.00 0.00 0.00 4.08
1772 3331 3.569250 ACCAAATTACCATCGTTGCAC 57.431 42.857 0.00 0.00 0.00 4.57
1773 3332 2.230266 ACCAAATTACCATCGTTGCACC 59.770 45.455 0.00 0.00 0.00 5.01
1774 3333 2.491693 CCAAATTACCATCGTTGCACCT 59.508 45.455 0.00 0.00 0.00 4.00
1775 3334 3.692101 CCAAATTACCATCGTTGCACCTA 59.308 43.478 0.00 0.00 0.00 3.08
1776 3335 4.156922 CCAAATTACCATCGTTGCACCTAA 59.843 41.667 0.00 0.00 0.00 2.69
1777 3336 5.331902 CAAATTACCATCGTTGCACCTAAG 58.668 41.667 0.00 0.00 0.00 2.18
1778 3337 3.688694 TTACCATCGTTGCACCTAAGT 57.311 42.857 0.00 0.00 0.00 2.24
1779 3338 2.561478 ACCATCGTTGCACCTAAGTT 57.439 45.000 0.00 0.00 0.00 2.66
1780 3339 2.858745 ACCATCGTTGCACCTAAGTTT 58.141 42.857 0.00 0.00 0.00 2.66
1781 3340 2.552315 ACCATCGTTGCACCTAAGTTTG 59.448 45.455 0.00 0.00 0.00 2.93
1782 3341 2.811431 CCATCGTTGCACCTAAGTTTGA 59.189 45.455 0.00 0.00 0.00 2.69
1783 3342 3.440173 CCATCGTTGCACCTAAGTTTGAT 59.560 43.478 0.00 0.00 0.00 2.57
1784 3343 4.437390 CCATCGTTGCACCTAAGTTTGATC 60.437 45.833 0.00 0.00 0.00 2.92
1785 3344 2.734606 TCGTTGCACCTAAGTTTGATCG 59.265 45.455 0.00 0.00 0.00 3.69
1786 3345 2.724839 CGTTGCACCTAAGTTTGATCGC 60.725 50.000 0.00 0.00 0.00 4.58
1787 3346 2.177394 TGCACCTAAGTTTGATCGCA 57.823 45.000 0.00 0.00 0.00 5.10
1788 3347 2.499197 TGCACCTAAGTTTGATCGCAA 58.501 42.857 0.00 0.00 0.00 4.85
1789 3348 2.225491 TGCACCTAAGTTTGATCGCAAC 59.775 45.455 0.26 0.26 32.79 4.17
1790 3349 2.225491 GCACCTAAGTTTGATCGCAACA 59.775 45.455 9.58 0.00 32.79 3.33
1791 3350 3.667960 GCACCTAAGTTTGATCGCAACAG 60.668 47.826 9.58 0.91 32.79 3.16
1792 3351 3.745975 CACCTAAGTTTGATCGCAACAGA 59.254 43.478 9.58 0.00 32.79 3.41
1793 3352 4.393062 CACCTAAGTTTGATCGCAACAGAT 59.607 41.667 9.58 0.26 32.79 2.90
1794 3353 5.003804 ACCTAAGTTTGATCGCAACAGATT 58.996 37.500 9.58 0.14 32.79 2.40
1795 3354 5.473504 ACCTAAGTTTGATCGCAACAGATTT 59.526 36.000 9.58 0.00 32.79 2.17
1796 3355 6.016276 ACCTAAGTTTGATCGCAACAGATTTT 60.016 34.615 9.58 0.00 32.79 1.82
1797 3356 6.863126 CCTAAGTTTGATCGCAACAGATTTTT 59.137 34.615 9.58 0.00 32.79 1.94
1825 3384 6.662414 TTTTTAGAATCGATCGCAACAGAT 57.338 33.333 11.09 0.00 0.00 2.90
1826 3385 7.764695 TTTTTAGAATCGATCGCAACAGATA 57.235 32.000 11.09 0.00 0.00 1.98
1827 3386 7.764695 TTTTAGAATCGATCGCAACAGATAA 57.235 32.000 11.09 0.52 0.00 1.75
1828 3387 6.993175 TTAGAATCGATCGCAACAGATAAG 57.007 37.500 11.09 0.00 0.00 1.73
1829 3388 4.302455 AGAATCGATCGCAACAGATAAGG 58.698 43.478 11.09 0.00 0.00 2.69
1830 3389 4.038042 AGAATCGATCGCAACAGATAAGGA 59.962 41.667 11.09 0.00 0.00 3.36
1831 3390 3.355626 TCGATCGCAACAGATAAGGAG 57.644 47.619 11.09 0.00 0.00 3.69
1832 3391 2.034685 TCGATCGCAACAGATAAGGAGG 59.965 50.000 11.09 0.00 0.00 4.30
1833 3392 2.034685 CGATCGCAACAGATAAGGAGGA 59.965 50.000 0.26 0.00 0.00 3.71
1834 3393 2.961526 TCGCAACAGATAAGGAGGAC 57.038 50.000 0.00 0.00 0.00 3.85
1835 3394 1.480954 TCGCAACAGATAAGGAGGACC 59.519 52.381 0.00 0.00 0.00 4.46
1836 3395 1.473434 CGCAACAGATAAGGAGGACCC 60.473 57.143 0.00 0.00 36.73 4.46
1837 3396 1.559682 GCAACAGATAAGGAGGACCCA 59.440 52.381 0.00 0.00 37.41 4.51
1838 3397 2.026262 GCAACAGATAAGGAGGACCCAA 60.026 50.000 0.00 0.00 37.41 4.12
1839 3398 3.878778 CAACAGATAAGGAGGACCCAAG 58.121 50.000 0.00 0.00 37.41 3.61
1840 3399 1.840635 ACAGATAAGGAGGACCCAAGC 59.159 52.381 0.00 0.00 37.41 4.01
1841 3400 1.839994 CAGATAAGGAGGACCCAAGCA 59.160 52.381 0.00 0.00 37.41 3.91
1842 3401 1.840635 AGATAAGGAGGACCCAAGCAC 59.159 52.381 0.00 0.00 37.41 4.40
1843 3402 0.919710 ATAAGGAGGACCCAAGCACC 59.080 55.000 0.00 0.00 37.41 5.01
1844 3403 0.178873 TAAGGAGGACCCAAGCACCT 60.179 55.000 0.00 0.00 37.41 4.00
1845 3404 1.492993 AAGGAGGACCCAAGCACCTC 61.493 60.000 0.00 0.00 46.44 3.85
1846 3405 1.920835 GGAGGACCCAAGCACCTCT 60.921 63.158 0.00 0.00 46.39 3.69
1847 3406 1.599576 GAGGACCCAAGCACCTCTC 59.400 63.158 0.00 0.00 44.54 3.20
1848 3407 1.904990 GAGGACCCAAGCACCTCTCC 61.905 65.000 0.00 0.00 44.54 3.71
1849 3408 2.224159 GGACCCAAGCACCTCTCCA 61.224 63.158 0.00 0.00 0.00 3.86
1850 3409 1.566298 GGACCCAAGCACCTCTCCAT 61.566 60.000 0.00 0.00 0.00 3.41
1851 3410 1.204146 GACCCAAGCACCTCTCCATA 58.796 55.000 0.00 0.00 0.00 2.74
1852 3411 1.139853 GACCCAAGCACCTCTCCATAG 59.860 57.143 0.00 0.00 0.00 2.23
1853 3412 0.179034 CCCAAGCACCTCTCCATAGC 60.179 60.000 0.00 0.00 0.00 2.97
1854 3413 0.179034 CCAAGCACCTCTCCATAGCC 60.179 60.000 0.00 0.00 0.00 3.93
1855 3414 0.835941 CAAGCACCTCTCCATAGCCT 59.164 55.000 0.00 0.00 0.00 4.58
1856 3415 1.211457 CAAGCACCTCTCCATAGCCTT 59.789 52.381 0.00 0.00 0.00 4.35
1857 3416 1.127343 AGCACCTCTCCATAGCCTTC 58.873 55.000 0.00 0.00 0.00 3.46
1858 3417 0.249657 GCACCTCTCCATAGCCTTCG 60.250 60.000 0.00 0.00 0.00 3.79
1859 3418 0.249657 CACCTCTCCATAGCCTTCGC 60.250 60.000 0.00 0.00 0.00 4.70
1860 3419 1.369321 CCTCTCCATAGCCTTCGCC 59.631 63.158 0.00 0.00 34.57 5.54
1861 3420 1.006805 CTCTCCATAGCCTTCGCCG 60.007 63.158 0.00 0.00 34.57 6.46
1862 3421 2.029666 CTCCATAGCCTTCGCCGG 59.970 66.667 0.00 0.00 34.57 6.13
1863 3422 2.762459 TCCATAGCCTTCGCCGGT 60.762 61.111 1.90 0.00 34.57 5.28
1864 3423 2.280186 CCATAGCCTTCGCCGGTC 60.280 66.667 1.90 0.00 34.57 4.79
1865 3424 2.658593 CATAGCCTTCGCCGGTCG 60.659 66.667 1.90 7.73 40.15 4.79
1866 3425 2.831742 ATAGCCTTCGCCGGTCGA 60.832 61.111 15.44 15.44 46.88 4.20
1876 3435 2.905880 CCGGTCGAGGCGTAGGAT 60.906 66.667 0.00 0.00 0.00 3.24
1877 3436 2.487532 CCGGTCGAGGCGTAGGATT 61.488 63.158 0.00 0.00 0.00 3.01
1878 3437 1.299165 CGGTCGAGGCGTAGGATTG 60.299 63.158 0.00 0.00 0.00 2.67
1879 3438 1.721664 CGGTCGAGGCGTAGGATTGA 61.722 60.000 0.00 0.00 0.00 2.57
1880 3439 0.030908 GGTCGAGGCGTAGGATTGAG 59.969 60.000 0.00 0.00 0.00 3.02
1881 3440 0.595310 GTCGAGGCGTAGGATTGAGC 60.595 60.000 0.00 0.00 0.00 4.26
1884 3443 2.280186 GGCGTAGGATTGAGCCGG 60.280 66.667 0.00 0.00 40.17 6.13
1885 3444 2.280186 GCGTAGGATTGAGCCGGG 60.280 66.667 2.18 0.00 0.00 5.73
1886 3445 2.421739 CGTAGGATTGAGCCGGGG 59.578 66.667 2.18 0.00 0.00 5.73
1887 3446 2.131709 CGTAGGATTGAGCCGGGGA 61.132 63.158 2.18 0.00 0.00 4.81
1888 3447 1.749033 GTAGGATTGAGCCGGGGAG 59.251 63.158 2.18 0.00 0.00 4.30
1889 3448 2.140792 TAGGATTGAGCCGGGGAGC 61.141 63.158 2.18 0.00 0.00 4.70
1890 3449 4.570874 GGATTGAGCCGGGGAGCC 62.571 72.222 2.18 0.00 0.00 4.70
1891 3450 3.483869 GATTGAGCCGGGGAGCCT 61.484 66.667 2.18 0.00 0.00 4.58
1892 3451 3.764160 GATTGAGCCGGGGAGCCTG 62.764 68.421 2.18 0.00 0.00 4.85
1900 3459 3.462678 GGGGAGCCTGGACGACTC 61.463 72.222 0.00 0.00 0.00 3.36
1901 3460 2.363147 GGGAGCCTGGACGACTCT 60.363 66.667 0.00 0.00 0.00 3.24
1902 3461 2.419739 GGGAGCCTGGACGACTCTC 61.420 68.421 0.00 0.00 0.00 3.20
1903 3462 1.379309 GGAGCCTGGACGACTCTCT 60.379 63.158 0.00 0.00 0.00 3.10
1904 3463 1.662438 GGAGCCTGGACGACTCTCTG 61.662 65.000 0.00 0.00 0.00 3.35
1905 3464 0.678366 GAGCCTGGACGACTCTCTGA 60.678 60.000 0.00 0.00 0.00 3.27
1906 3465 0.033601 AGCCTGGACGACTCTCTGAT 60.034 55.000 0.00 0.00 0.00 2.90
1907 3466 0.102120 GCCTGGACGACTCTCTGATG 59.898 60.000 0.00 0.00 0.00 3.07
1908 3467 1.756430 CCTGGACGACTCTCTGATGA 58.244 55.000 0.00 0.00 0.00 2.92
1909 3468 2.095461 CCTGGACGACTCTCTGATGAA 58.905 52.381 0.00 0.00 0.00 2.57
1927 3486 2.066262 GAAATGAAAGCACGACCTCGA 58.934 47.619 0.78 0.00 43.02 4.04
1931 3490 0.662374 GAAAGCACGACCTCGAACGA 60.662 55.000 11.99 0.00 43.02 3.85
1945 3504 1.127951 CGAACGAGCCGCTAATTTTGT 59.872 47.619 0.00 0.00 0.00 2.83
1957 3516 5.220854 CCGCTAATTTTGTCCGATCTTTCAT 60.221 40.000 0.00 0.00 0.00 2.57
1968 3527 4.641541 TCCGATCTTTCATGATGCAACAAT 59.358 37.500 0.00 0.00 0.00 2.71
2015 3574 8.561738 AAAGTTTCCAATTACACGAGATACAT 57.438 30.769 0.00 0.00 0.00 2.29
2020 3579 6.054941 TCCAATTACACGAGATACATGCAAT 58.945 36.000 0.00 0.00 0.00 3.56
2029 3588 6.476706 CACGAGATACATGCAATCTGAAACTA 59.523 38.462 14.21 0.00 33.82 2.24
2065 3624 3.118408 TGACTAGCAATACCTCGGCAAAT 60.118 43.478 0.00 0.00 0.00 2.32
2084 3643 0.035152 TAAGGCACCTCTCGTCGGTA 60.035 55.000 0.00 0.00 32.37 4.02
2212 4138 9.883293 TGATAGAAAATCTCTACTCCTAATGGA 57.117 33.333 0.00 0.00 39.52 3.41
2228 4154 0.888619 TGGAGCAGTTGGTAGTCTCG 59.111 55.000 0.00 0.00 0.00 4.04
2229 4155 0.458716 GGAGCAGTTGGTAGTCTCGC 60.459 60.000 0.00 0.00 0.00 5.03
2231 4157 0.969894 AGCAGTTGGTAGTCTCGCTT 59.030 50.000 0.00 0.00 0.00 4.68
2232 4158 1.344763 AGCAGTTGGTAGTCTCGCTTT 59.655 47.619 0.00 0.00 0.00 3.51
2233 4159 1.727335 GCAGTTGGTAGTCTCGCTTTC 59.273 52.381 0.00 0.00 0.00 2.62
2234 4160 2.866460 GCAGTTGGTAGTCTCGCTTTCA 60.866 50.000 0.00 0.00 0.00 2.69
2235 4161 2.989840 CAGTTGGTAGTCTCGCTTTCAG 59.010 50.000 0.00 0.00 0.00 3.02
2236 4162 2.028930 AGTTGGTAGTCTCGCTTTCAGG 60.029 50.000 0.00 0.00 0.00 3.86
2237 4163 1.629043 TGGTAGTCTCGCTTTCAGGT 58.371 50.000 0.00 0.00 0.00 4.00
2238 4164 1.968493 TGGTAGTCTCGCTTTCAGGTT 59.032 47.619 0.00 0.00 0.00 3.50
2241 4167 3.813724 GGTAGTCTCGCTTTCAGGTTTTT 59.186 43.478 0.00 0.00 0.00 1.94
2242 4168 4.083961 GGTAGTCTCGCTTTCAGGTTTTTC 60.084 45.833 0.00 0.00 0.00 2.29
2243 4169 3.809905 AGTCTCGCTTTCAGGTTTTTCT 58.190 40.909 0.00 0.00 0.00 2.52
2244 4170 4.200092 AGTCTCGCTTTCAGGTTTTTCTT 58.800 39.130 0.00 0.00 0.00 2.52
2245 4171 4.273724 AGTCTCGCTTTCAGGTTTTTCTTC 59.726 41.667 0.00 0.00 0.00 2.87
2246 4172 3.247648 TCTCGCTTTCAGGTTTTTCTTCG 59.752 43.478 0.00 0.00 0.00 3.79
2247 4173 2.940410 TCGCTTTCAGGTTTTTCTTCGT 59.060 40.909 0.00 0.00 0.00 3.85
2248 4174 3.001939 TCGCTTTCAGGTTTTTCTTCGTC 59.998 43.478 0.00 0.00 0.00 4.20
2249 4175 3.629058 GCTTTCAGGTTTTTCTTCGTCC 58.371 45.455 0.00 0.00 0.00 4.79
2251 4177 3.284793 TTCAGGTTTTTCTTCGTCCCA 57.715 42.857 0.00 0.00 0.00 4.37
2255 4181 1.335810 GGTTTTTCTTCGTCCCACCAC 59.664 52.381 0.00 0.00 0.00 4.16
2256 4182 2.294979 GTTTTTCTTCGTCCCACCACT 58.705 47.619 0.00 0.00 0.00 4.00
2257 4183 2.686405 GTTTTTCTTCGTCCCACCACTT 59.314 45.455 0.00 0.00 0.00 3.16
2258 4184 2.721425 TTTCTTCGTCCCACCACTTT 57.279 45.000 0.00 0.00 0.00 2.66
2264 4190 1.666872 GTCCCACCACTTTCGTCCG 60.667 63.158 0.00 0.00 0.00 4.79
2268 4194 0.816421 CCACCACTTTCGTCCGGTTT 60.816 55.000 0.00 0.00 0.00 3.27
2290 4216 6.949578 TTTTTCGTAGGTTAACCATCGTAG 57.050 37.500 26.26 11.00 38.89 3.51
2294 4220 6.455360 TCGTAGGTTAACCATCGTAGATTT 57.545 37.500 26.26 4.26 45.12 2.17
2320 4872 2.190578 GCCTCCCCCACTTCATCG 59.809 66.667 0.00 0.00 0.00 3.84
2321 4873 2.911143 CCTCCCCCACTTCATCGG 59.089 66.667 0.00 0.00 0.00 4.18
2323 4875 1.562672 CCTCCCCCACTTCATCGGTT 61.563 60.000 0.00 0.00 0.00 4.44
2328 4880 3.010808 TCCCCCACTTCATCGGTTTATTT 59.989 43.478 0.00 0.00 0.00 1.40
2331 4883 4.461081 CCCCACTTCATCGGTTTATTTTCA 59.539 41.667 0.00 0.00 0.00 2.69
2332 4884 5.399013 CCCACTTCATCGGTTTATTTTCAC 58.601 41.667 0.00 0.00 0.00 3.18
2333 4885 5.183140 CCCACTTCATCGGTTTATTTTCACT 59.817 40.000 0.00 0.00 0.00 3.41
2334 4886 6.294508 CCCACTTCATCGGTTTATTTTCACTT 60.295 38.462 0.00 0.00 0.00 3.16
2335 4887 6.801862 CCACTTCATCGGTTTATTTTCACTTC 59.198 38.462 0.00 0.00 0.00 3.01
2336 4888 7.359595 CACTTCATCGGTTTATTTTCACTTCA 58.640 34.615 0.00 0.00 0.00 3.02
2337 4889 7.323656 CACTTCATCGGTTTATTTTCACTTCAC 59.676 37.037 0.00 0.00 0.00 3.18
2338 4890 6.249035 TCATCGGTTTATTTTCACTTCACC 57.751 37.500 0.00 0.00 0.00 4.02
2339 4891 5.182380 TCATCGGTTTATTTTCACTTCACCC 59.818 40.000 0.00 0.00 0.00 4.61
2340 4892 4.721132 TCGGTTTATTTTCACTTCACCCT 58.279 39.130 0.00 0.00 0.00 4.34
2342 4894 4.760204 CGGTTTATTTTCACTTCACCCTCT 59.240 41.667 0.00 0.00 0.00 3.69
2343 4895 5.106673 CGGTTTATTTTCACTTCACCCTCTC 60.107 44.000 0.00 0.00 0.00 3.20
2344 4896 5.768164 GGTTTATTTTCACTTCACCCTCTCA 59.232 40.000 0.00 0.00 0.00 3.27
2345 4897 6.294010 GGTTTATTTTCACTTCACCCTCTCAC 60.294 42.308 0.00 0.00 0.00 3.51
2346 4898 3.924114 TTTTCACTTCACCCTCTCACA 57.076 42.857 0.00 0.00 0.00 3.58
2347 4899 2.910688 TTCACTTCACCCTCTCACAC 57.089 50.000 0.00 0.00 0.00 3.82
2348 4900 1.788229 TCACTTCACCCTCTCACACA 58.212 50.000 0.00 0.00 0.00 3.72
2350 4902 1.051812 ACTTCACCCTCTCACACAGG 58.948 55.000 0.00 0.00 0.00 4.00
2354 4906 2.667418 CCCTCTCACACAGGGCTG 59.333 66.667 0.00 0.00 44.59 4.85
2355 4907 2.667418 CCTCTCACACAGGGCTGG 59.333 66.667 0.00 0.00 34.19 4.85
2356 4908 2.667418 CTCTCACACAGGGCTGGG 59.333 66.667 0.00 0.00 40.54 4.45
2357 4909 3.618780 CTCTCACACAGGGCTGGGC 62.619 68.421 0.00 0.00 37.55 5.36
2358 4910 3.957586 CTCACACAGGGCTGGGCA 61.958 66.667 0.00 0.00 37.55 5.36
2360 4912 2.283388 CACACAGGGCTGGGCATT 60.283 61.111 0.00 0.00 37.55 3.56
2361 4913 2.036256 ACACAGGGCTGGGCATTC 59.964 61.111 0.00 0.00 37.55 2.67
2362 4914 3.136123 CACAGGGCTGGGCATTCG 61.136 66.667 0.00 0.00 34.19 3.34
2363 4915 4.431131 ACAGGGCTGGGCATTCGG 62.431 66.667 0.00 0.00 34.19 4.30
2367 4919 1.379309 GGGCTGGGCATTCGGTTTA 60.379 57.895 0.00 0.00 0.00 2.01
2368 4920 0.755327 GGGCTGGGCATTCGGTTTAT 60.755 55.000 0.00 0.00 0.00 1.40
2370 4922 2.514803 GGCTGGGCATTCGGTTTATAT 58.485 47.619 0.00 0.00 0.00 0.86
2371 4923 2.228822 GGCTGGGCATTCGGTTTATATG 59.771 50.000 0.00 0.00 0.00 1.78
2372 4924 2.228822 GCTGGGCATTCGGTTTATATGG 59.771 50.000 0.00 0.00 0.00 2.74
2373 4925 3.486383 CTGGGCATTCGGTTTATATGGT 58.514 45.455 0.00 0.00 0.00 3.55
2374 4926 3.888930 CTGGGCATTCGGTTTATATGGTT 59.111 43.478 0.00 0.00 0.00 3.67
2376 4928 3.886505 GGGCATTCGGTTTATATGGTTCA 59.113 43.478 0.00 0.00 0.00 3.18
2377 4929 4.522789 GGGCATTCGGTTTATATGGTTCAT 59.477 41.667 0.00 0.00 0.00 2.57
2378 4930 5.708230 GGGCATTCGGTTTATATGGTTCATA 59.292 40.000 0.00 0.00 0.00 2.15
2379 4931 6.349033 GGGCATTCGGTTTATATGGTTCATAC 60.349 42.308 0.00 0.00 0.00 2.39
2380 4932 6.349033 GGCATTCGGTTTATATGGTTCATACC 60.349 42.308 0.00 0.00 45.26 2.73
2393 4945 5.147767 GGTTCATACCGTTCGGTTTATTC 57.852 43.478 21.64 10.15 39.52 1.75
2394 4946 4.259930 GGTTCATACCGTTCGGTTTATTCG 60.260 45.833 21.64 3.35 39.52 3.34
2395 4947 3.446799 TCATACCGTTCGGTTTATTCGG 58.553 45.455 21.64 0.00 45.53 4.30
2398 4950 1.431496 CCGTTCGGTTTATTCGGTGT 58.569 50.000 2.82 0.00 36.99 4.16
2400 4952 2.223845 CCGTTCGGTTTATTCGGTGTTT 59.776 45.455 2.82 0.00 36.99 2.83
2401 4953 3.303924 CCGTTCGGTTTATTCGGTGTTTT 60.304 43.478 2.82 0.00 36.99 2.43
2402 4954 4.084118 CCGTTCGGTTTATTCGGTGTTTTA 60.084 41.667 2.82 0.00 36.99 1.52
2403 4955 5.390779 CCGTTCGGTTTATTCGGTGTTTTAT 60.391 40.000 2.82 0.00 36.99 1.40
2404 4956 6.183360 CCGTTCGGTTTATTCGGTGTTTTATA 60.183 38.462 2.82 0.00 36.99 0.98
2405 4957 7.232994 CGTTCGGTTTATTCGGTGTTTTATAA 58.767 34.615 0.00 0.00 0.00 0.98
2406 4958 7.904461 CGTTCGGTTTATTCGGTGTTTTATAAT 59.096 33.333 0.00 0.00 0.00 1.28
2410 4962 8.726836 CGGTTTATTCGGTGTTTTATAATTTCG 58.273 33.333 0.00 0.00 0.00 3.46
2411 4963 9.012448 GGTTTATTCGGTGTTTTATAATTTCGG 57.988 33.333 0.00 0.00 0.00 4.30
2412 4964 9.558648 GTTTATTCGGTGTTTTATAATTTCGGT 57.441 29.630 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.712829 TCAGTATGGGACCGAAATCACTAA 59.287 41.667 0.00 0.00 36.16 2.24
2 3 4.283337 TCAGTATGGGACCGAAATCACTA 58.717 43.478 0.00 0.00 36.16 2.74
3 4 3.104512 TCAGTATGGGACCGAAATCACT 58.895 45.455 0.00 0.00 36.16 3.41
4 5 3.536956 TCAGTATGGGACCGAAATCAC 57.463 47.619 0.00 0.00 36.16 3.06
5 6 3.370103 GGTTCAGTATGGGACCGAAATCA 60.370 47.826 0.00 0.00 34.13 2.57
6 7 3.203716 GGTTCAGTATGGGACCGAAATC 58.796 50.000 0.00 0.00 34.13 2.17
7 8 2.574369 TGGTTCAGTATGGGACCGAAAT 59.426 45.455 0.00 0.00 42.90 2.17
8 9 1.979308 TGGTTCAGTATGGGACCGAAA 59.021 47.619 0.00 0.00 42.90 3.46
9 10 1.646912 TGGTTCAGTATGGGACCGAA 58.353 50.000 0.00 0.00 42.90 4.30
10 11 1.646912 TTGGTTCAGTATGGGACCGA 58.353 50.000 0.00 0.00 42.90 4.69
11 12 2.483014 TTTGGTTCAGTATGGGACCG 57.517 50.000 0.00 0.00 42.90 4.79
12 13 5.070685 GGATATTTGGTTCAGTATGGGACC 58.929 45.833 0.00 0.00 41.21 4.46
13 14 4.755123 CGGATATTTGGTTCAGTATGGGAC 59.245 45.833 0.00 0.00 36.16 4.46
14 15 4.410883 ACGGATATTTGGTTCAGTATGGGA 59.589 41.667 0.00 0.00 36.16 4.37
15 16 4.515191 CACGGATATTTGGTTCAGTATGGG 59.485 45.833 0.00 0.00 36.16 4.00
16 17 5.364778 TCACGGATATTTGGTTCAGTATGG 58.635 41.667 0.00 0.00 36.16 2.74
17 18 6.918892 TTCACGGATATTTGGTTCAGTATG 57.081 37.500 0.00 0.00 37.54 2.39
18 19 6.017109 GCATTCACGGATATTTGGTTCAGTAT 60.017 38.462 0.00 0.00 0.00 2.12
19 20 5.295787 GCATTCACGGATATTTGGTTCAGTA 59.704 40.000 0.00 0.00 0.00 2.74
20 21 4.096382 GCATTCACGGATATTTGGTTCAGT 59.904 41.667 0.00 0.00 0.00 3.41
21 22 4.601019 GCATTCACGGATATTTGGTTCAG 58.399 43.478 0.00 0.00 0.00 3.02
22 23 3.064682 CGCATTCACGGATATTTGGTTCA 59.935 43.478 0.00 0.00 0.00 3.18
23 24 3.617669 CGCATTCACGGATATTTGGTTC 58.382 45.455 0.00 0.00 0.00 3.62
24 25 3.691049 CGCATTCACGGATATTTGGTT 57.309 42.857 0.00 0.00 0.00 3.67
49 50 1.115326 AGGGTTGTGCTTTGAAGGCC 61.115 55.000 0.00 0.00 0.00 5.19
55 56 1.300388 GCTGCAGGGTTGTGCTTTG 60.300 57.895 17.12 0.00 44.32 2.77
63 64 1.449601 CCGTATTCGCTGCAGGGTT 60.450 57.895 27.76 19.18 35.54 4.11
69 70 0.594028 TGTCGATCCGTATTCGCTGC 60.594 55.000 0.00 0.00 36.56 5.25
70 71 1.835121 TTGTCGATCCGTATTCGCTG 58.165 50.000 0.00 0.00 36.56 5.18
71 72 2.572191 TTTGTCGATCCGTATTCGCT 57.428 45.000 0.00 0.00 36.56 4.93
72 73 2.659291 GCATTTGTCGATCCGTATTCGC 60.659 50.000 0.00 0.00 36.56 4.70
73 74 2.794910 AGCATTTGTCGATCCGTATTCG 59.205 45.455 0.00 0.00 37.94 3.34
74 75 3.802139 TGAGCATTTGTCGATCCGTATTC 59.198 43.478 0.00 0.00 0.00 1.75
75 76 3.555956 GTGAGCATTTGTCGATCCGTATT 59.444 43.478 0.00 0.00 0.00 1.89
76 77 3.123804 GTGAGCATTTGTCGATCCGTAT 58.876 45.455 0.00 0.00 0.00 3.06
77 78 2.536365 GTGAGCATTTGTCGATCCGTA 58.464 47.619 0.00 0.00 0.00 4.02
78 79 1.359848 GTGAGCATTTGTCGATCCGT 58.640 50.000 0.00 0.00 0.00 4.69
79 80 0.652592 GGTGAGCATTTGTCGATCCG 59.347 55.000 0.00 0.00 0.00 4.18
83 84 2.349590 CATGAGGTGAGCATTTGTCGA 58.650 47.619 0.00 0.00 0.00 4.20
108 109 4.154347 CTGGGTCCTCTCGCAGCC 62.154 72.222 0.00 0.00 40.40 4.85
110 111 2.947532 TTGCTGGGTCCTCTCGCAG 61.948 63.158 6.43 6.43 46.44 5.18
111 112 2.922503 TTGCTGGGTCCTCTCGCA 60.923 61.111 0.00 0.00 0.00 5.10
125 132 6.363357 GTCCAACAAAGTAATCTTCATGTTGC 59.637 38.462 14.66 4.85 43.58 4.17
292 310 1.300481 TAGCTCGTCTCCGACATGAG 58.700 55.000 0.00 0.00 38.40 2.90
448 466 6.445786 AGACCTTAACCCTTAACCATGATGTA 59.554 38.462 0.00 0.00 0.00 2.29
503 521 5.964958 ATCACACGGAAAACAAATCAGAT 57.035 34.783 0.00 0.00 0.00 2.90
519 538 1.654105 CGCCGTCTAAGACAATCACAC 59.346 52.381 0.00 0.00 32.09 3.82
525 544 2.098607 CAGGATACGCCGTCTAAGACAA 59.901 50.000 0.00 0.00 43.43 3.18
580 599 0.679002 CCAATGCTGTGTCCAGGAGG 60.679 60.000 0.00 0.00 42.74 4.30
654 681 0.253894 AGGGTATGGCCGGTAAACAC 59.746 55.000 1.90 0.00 38.44 3.32
668 695 2.753043 GACGCCGGAGACAGGGTA 60.753 66.667 13.83 0.00 0.00 3.69
744 771 3.663176 CTGGCTGTGTTGTGGGCG 61.663 66.667 0.00 0.00 0.00 6.13
787 2268 0.928229 CGCAACGTAAGGGTGATAGC 59.072 55.000 0.00 0.00 46.39 2.97
861 2342 4.955925 TTTATAGCGTGTCAAACCCATG 57.044 40.909 0.00 0.00 0.00 3.66
865 2346 4.082949 AGCCTTTTTATAGCGTGTCAAACC 60.083 41.667 0.00 0.00 0.00 3.27
912 2393 1.391157 TTCTGCTTTGGTGGTGGTGC 61.391 55.000 0.00 0.00 0.00 5.01
915 2396 1.463553 GGGTTCTGCTTTGGTGGTGG 61.464 60.000 0.00 0.00 0.00 4.61
931 2412 2.054799 TGGAGAGTTGCTTGTTAGGGT 58.945 47.619 0.00 0.00 0.00 4.34
934 2415 5.582665 GGATTAGTGGAGAGTTGCTTGTTAG 59.417 44.000 0.00 0.00 0.00 2.34
944 2425 2.750141 TAGGCGGATTAGTGGAGAGT 57.250 50.000 0.00 0.00 0.00 3.24
947 2428 4.499183 GAATGATAGGCGGATTAGTGGAG 58.501 47.826 0.00 0.00 0.00 3.86
961 2442 1.795286 GCGCGAAGGAAGGAATGATAG 59.205 52.381 12.10 0.00 0.00 2.08
981 2462 1.522668 TTGCAGAGGTTGTCAATCGG 58.477 50.000 0.00 0.00 0.00 4.18
986 2467 1.236616 CGCCATTGCAGAGGTTGTCA 61.237 55.000 8.13 0.00 37.32 3.58
993 2481 0.449388 GGTTCTTCGCCATTGCAGAG 59.551 55.000 0.00 0.00 37.32 3.35
1030 2518 1.586564 CGAGAAGGGACGCGATCAC 60.587 63.158 15.93 8.13 35.31 3.06
1118 2609 4.732938 GCAGTAGTAAGGTACACGTCCATC 60.733 50.000 0.00 0.00 0.00 3.51
1121 2612 2.489329 TGCAGTAGTAAGGTACACGTCC 59.511 50.000 0.00 0.00 0.00 4.79
1125 2616 6.017400 TGTAGTTGCAGTAGTAAGGTACAC 57.983 41.667 0.00 0.00 0.00 2.90
1126 2617 6.662234 AGATGTAGTTGCAGTAGTAAGGTACA 59.338 38.462 0.00 0.00 30.14 2.90
1132 2674 7.976175 CAGATCAAGATGTAGTTGCAGTAGTAA 59.024 37.037 0.00 0.00 0.00 2.24
1147 2689 7.416817 CAGTAGTCAGAGTACAGATCAAGATG 58.583 42.308 16.40 0.80 0.00 2.90
1159 2702 3.434641 CGTTCGTTCCAGTAGTCAGAGTA 59.565 47.826 0.00 0.00 0.00 2.59
1169 2712 2.105528 ACGCACGTTCGTTCCAGT 59.894 55.556 7.60 0.00 40.07 4.00
1291 2834 4.785512 AGCGCGACGGAGAAGCAG 62.786 66.667 12.10 0.00 33.84 4.24
1365 2908 2.434359 GGCCGACGAAGGTCTTGG 60.434 66.667 0.00 0.00 41.16 3.61
1439 2986 1.002142 CATAACGCTACCGGTGATCGA 60.002 52.381 19.93 3.20 42.43 3.59
1449 2996 2.550208 CCCCCTGGATTCATAACGCTAC 60.550 54.545 0.00 0.00 0.00 3.58
1455 3009 1.064017 GCACACCCCCTGGATTCATAA 60.064 52.381 0.00 0.00 34.81 1.90
1464 3018 2.608988 AGGAGAGCACACCCCCTG 60.609 66.667 0.00 0.00 0.00 4.45
1468 3022 1.298014 CAAGGAGGAGAGCACACCC 59.702 63.158 0.00 0.00 0.00 4.61
1470 3024 1.066787 GGTACAAGGAGGAGAGCACAC 60.067 57.143 0.00 0.00 0.00 3.82
1471 3025 1.203187 AGGTACAAGGAGGAGAGCACA 60.203 52.381 0.00 0.00 0.00 4.57
1482 3038 2.286365 TTGCAAGGGAAGGTACAAGG 57.714 50.000 0.00 0.00 0.00 3.61
1533 3091 2.161808 CACCAAGCAGCATCTCTCAAAG 59.838 50.000 0.00 0.00 0.00 2.77
1535 3093 1.072806 ACACCAAGCAGCATCTCTCAA 59.927 47.619 0.00 0.00 0.00 3.02
1545 3103 2.485426 CACACCAGATAACACCAAGCAG 59.515 50.000 0.00 0.00 0.00 4.24
1565 3123 1.202582 GGCGAGCTACTTCAGAGTTCA 59.797 52.381 0.00 0.00 37.33 3.18
1566 3124 1.795889 CGGCGAGCTACTTCAGAGTTC 60.796 57.143 0.00 0.00 37.33 3.01
1567 3125 0.171455 CGGCGAGCTACTTCAGAGTT 59.829 55.000 0.00 0.00 37.33 3.01
1568 3126 1.658686 CCGGCGAGCTACTTCAGAGT 61.659 60.000 9.30 0.00 39.97 3.24
1569 3127 1.064946 CCGGCGAGCTACTTCAGAG 59.935 63.158 9.30 0.00 0.00 3.35
1570 3128 1.677966 ACCGGCGAGCTACTTCAGA 60.678 57.895 9.30 0.00 0.00 3.27
1571 3129 1.517257 CACCGGCGAGCTACTTCAG 60.517 63.158 9.30 0.00 0.00 3.02
1581 3139 1.745864 AACAAACACACACCGGCGA 60.746 52.632 9.30 0.00 0.00 5.54
1584 3142 1.064357 GGTACAACAAACACACACCGG 59.936 52.381 0.00 0.00 0.00 5.28
1608 3166 0.175760 TAATCAGGCACGACCAGCTC 59.824 55.000 0.00 0.00 43.14 4.09
1609 3167 0.833287 ATAATCAGGCACGACCAGCT 59.167 50.000 0.00 0.00 43.14 4.24
1635 3193 3.181433 TGAGGGAAGGAAGGAAAGGAAAC 60.181 47.826 0.00 0.00 0.00 2.78
1641 3199 3.073946 ACGAATTGAGGGAAGGAAGGAAA 59.926 43.478 0.00 0.00 0.00 3.13
1644 3202 2.633488 GACGAATTGAGGGAAGGAAGG 58.367 52.381 0.00 0.00 0.00 3.46
1649 3207 1.337823 ACACGGACGAATTGAGGGAAG 60.338 52.381 0.00 0.00 0.00 3.46
1652 3210 1.635663 GCACACGGACGAATTGAGGG 61.636 60.000 0.00 0.00 0.00 4.30
1674 3232 3.616956 GAGACCATTCTCACATCACCA 57.383 47.619 0.00 0.00 46.84 4.17
1684 3242 4.790790 AGGGAGTAATTTGGAGACCATTCT 59.209 41.667 0.00 0.00 31.53 2.40
1687 3245 5.222337 ACAAAGGGAGTAATTTGGAGACCAT 60.222 40.000 3.08 0.00 40.05 3.55
1688 3246 4.105697 ACAAAGGGAGTAATTTGGAGACCA 59.894 41.667 3.08 0.00 40.05 4.02
1728 3287 9.344309 GGTACTCTATCTTAATGATCTAAACGC 57.656 37.037 0.00 0.00 36.65 4.84
1740 3299 9.976511 CGATGGTAATTTGGTACTCTATCTTAA 57.023 33.333 0.00 0.00 0.00 1.85
1741 3300 9.139734 ACGATGGTAATTTGGTACTCTATCTTA 57.860 33.333 0.00 0.00 0.00 2.10
1742 3301 8.019656 ACGATGGTAATTTGGTACTCTATCTT 57.980 34.615 0.00 0.00 0.00 2.40
1743 3302 7.598759 ACGATGGTAATTTGGTACTCTATCT 57.401 36.000 0.00 0.00 0.00 1.98
1744 3303 7.307219 GCAACGATGGTAATTTGGTACTCTATC 60.307 40.741 0.00 0.00 0.00 2.08
1745 3304 6.482308 GCAACGATGGTAATTTGGTACTCTAT 59.518 38.462 0.00 0.00 0.00 1.98
1746 3305 5.813672 GCAACGATGGTAATTTGGTACTCTA 59.186 40.000 0.00 0.00 0.00 2.43
1747 3306 4.634443 GCAACGATGGTAATTTGGTACTCT 59.366 41.667 0.00 0.00 0.00 3.24
1748 3307 4.393680 TGCAACGATGGTAATTTGGTACTC 59.606 41.667 0.00 0.00 0.00 2.59
1749 3308 4.155280 GTGCAACGATGGTAATTTGGTACT 59.845 41.667 0.00 0.00 0.00 2.73
1750 3309 4.408694 GTGCAACGATGGTAATTTGGTAC 58.591 43.478 0.00 0.00 0.00 3.34
1751 3310 3.440872 GGTGCAACGATGGTAATTTGGTA 59.559 43.478 0.00 0.00 38.12 3.25
1752 3311 2.230266 GGTGCAACGATGGTAATTTGGT 59.770 45.455 0.00 0.00 38.12 3.67
1753 3312 2.491693 AGGTGCAACGATGGTAATTTGG 59.508 45.455 0.00 0.00 38.12 3.28
1754 3313 3.848272 AGGTGCAACGATGGTAATTTG 57.152 42.857 0.00 0.00 38.12 2.32
1755 3314 5.007682 ACTTAGGTGCAACGATGGTAATTT 58.992 37.500 0.00 0.00 38.12 1.82
1756 3315 4.585879 ACTTAGGTGCAACGATGGTAATT 58.414 39.130 0.00 0.00 38.12 1.40
1757 3316 4.216411 ACTTAGGTGCAACGATGGTAAT 57.784 40.909 0.00 0.00 38.12 1.89
1758 3317 3.688694 ACTTAGGTGCAACGATGGTAA 57.311 42.857 0.00 0.00 38.12 2.85
1759 3318 3.688694 AACTTAGGTGCAACGATGGTA 57.311 42.857 0.00 0.00 38.12 3.25
1760 3319 2.552315 CAAACTTAGGTGCAACGATGGT 59.448 45.455 0.00 0.00 38.12 3.55
1761 3320 2.811431 TCAAACTTAGGTGCAACGATGG 59.189 45.455 0.00 0.00 38.12 3.51
1762 3321 4.651994 GATCAAACTTAGGTGCAACGATG 58.348 43.478 0.00 0.00 38.12 3.84
1763 3322 3.370978 CGATCAAACTTAGGTGCAACGAT 59.629 43.478 0.00 0.00 38.12 3.73
1764 3323 2.734606 CGATCAAACTTAGGTGCAACGA 59.265 45.455 0.00 0.00 38.12 3.85
1765 3324 2.724839 GCGATCAAACTTAGGTGCAACG 60.725 50.000 0.00 0.00 38.12 4.10
1766 3325 2.225491 TGCGATCAAACTTAGGTGCAAC 59.775 45.455 0.00 0.00 0.00 4.17
1767 3326 2.499197 TGCGATCAAACTTAGGTGCAA 58.501 42.857 0.00 0.00 0.00 4.08
1768 3327 2.177394 TGCGATCAAACTTAGGTGCA 57.823 45.000 0.00 0.00 0.00 4.57
1769 3328 2.225491 TGTTGCGATCAAACTTAGGTGC 59.775 45.455 9.10 0.00 33.37 5.01
1770 3329 3.745975 TCTGTTGCGATCAAACTTAGGTG 59.254 43.478 9.10 0.00 33.37 4.00
1771 3330 4.002906 TCTGTTGCGATCAAACTTAGGT 57.997 40.909 9.10 0.00 33.37 3.08
1772 3331 5.551760 AATCTGTTGCGATCAAACTTAGG 57.448 39.130 9.10 0.14 33.37 2.69
1773 3332 7.858052 AAAAATCTGTTGCGATCAAACTTAG 57.142 32.000 9.10 1.28 33.37 2.18
1802 3361 6.662414 ATCTGTTGCGATCGATTCTAAAAA 57.338 33.333 21.57 0.00 0.00 1.94
1803 3362 7.042725 CCTTATCTGTTGCGATCGATTCTAAAA 60.043 37.037 21.57 2.62 0.00 1.52
1804 3363 6.420903 CCTTATCTGTTGCGATCGATTCTAAA 59.579 38.462 21.57 1.92 0.00 1.85
1805 3364 5.920840 CCTTATCTGTTGCGATCGATTCTAA 59.079 40.000 21.57 5.65 0.00 2.10
1806 3365 5.240844 TCCTTATCTGTTGCGATCGATTCTA 59.759 40.000 21.57 0.00 0.00 2.10
1807 3366 4.038042 TCCTTATCTGTTGCGATCGATTCT 59.962 41.667 21.57 0.00 0.00 2.40
1808 3367 4.299155 TCCTTATCTGTTGCGATCGATTC 58.701 43.478 21.57 8.06 0.00 2.52
1809 3368 4.302455 CTCCTTATCTGTTGCGATCGATT 58.698 43.478 21.57 0.00 0.00 3.34
1810 3369 3.305676 CCTCCTTATCTGTTGCGATCGAT 60.306 47.826 21.57 0.00 0.00 3.59
1811 3370 2.034685 CCTCCTTATCTGTTGCGATCGA 59.965 50.000 21.57 0.59 0.00 3.59
1812 3371 2.034685 TCCTCCTTATCTGTTGCGATCG 59.965 50.000 11.69 11.69 0.00 3.69
1813 3372 3.385577 GTCCTCCTTATCTGTTGCGATC 58.614 50.000 0.00 0.00 0.00 3.69
1814 3373 2.103263 GGTCCTCCTTATCTGTTGCGAT 59.897 50.000 0.00 0.00 0.00 4.58
1815 3374 1.480954 GGTCCTCCTTATCTGTTGCGA 59.519 52.381 0.00 0.00 0.00 5.10
1816 3375 1.473434 GGGTCCTCCTTATCTGTTGCG 60.473 57.143 0.00 0.00 0.00 4.85
1817 3376 1.559682 TGGGTCCTCCTTATCTGTTGC 59.440 52.381 0.00 0.00 36.20 4.17
1818 3377 3.878778 CTTGGGTCCTCCTTATCTGTTG 58.121 50.000 0.00 0.00 36.20 3.33
1819 3378 2.239907 GCTTGGGTCCTCCTTATCTGTT 59.760 50.000 0.00 0.00 36.20 3.16
1820 3379 1.840635 GCTTGGGTCCTCCTTATCTGT 59.159 52.381 0.00 0.00 36.20 3.41
1821 3380 1.839994 TGCTTGGGTCCTCCTTATCTG 59.160 52.381 0.00 0.00 36.20 2.90
1822 3381 1.840635 GTGCTTGGGTCCTCCTTATCT 59.159 52.381 0.00 0.00 36.20 1.98
1823 3382 1.134068 GGTGCTTGGGTCCTCCTTATC 60.134 57.143 0.00 0.00 36.20 1.75
1824 3383 0.919710 GGTGCTTGGGTCCTCCTTAT 59.080 55.000 0.00 0.00 36.20 1.73
1825 3384 0.178873 AGGTGCTTGGGTCCTCCTTA 60.179 55.000 0.00 0.00 36.20 2.69
1826 3385 1.464198 AGGTGCTTGGGTCCTCCTT 60.464 57.895 0.00 0.00 36.20 3.36
1827 3386 1.920835 GAGGTGCTTGGGTCCTCCT 60.921 63.158 0.00 0.00 41.09 3.69
1828 3387 1.904990 GAGAGGTGCTTGGGTCCTCC 61.905 65.000 6.80 0.00 46.15 4.30
1829 3388 1.599576 GAGAGGTGCTTGGGTCCTC 59.400 63.158 0.00 0.00 45.56 3.71
1830 3389 1.920835 GGAGAGGTGCTTGGGTCCT 60.921 63.158 0.00 0.00 0.00 3.85
1831 3390 1.566298 ATGGAGAGGTGCTTGGGTCC 61.566 60.000 0.00 0.00 0.00 4.46
1832 3391 1.139853 CTATGGAGAGGTGCTTGGGTC 59.860 57.143 0.00 0.00 0.00 4.46
1833 3392 1.207791 CTATGGAGAGGTGCTTGGGT 58.792 55.000 0.00 0.00 0.00 4.51
1834 3393 0.179034 GCTATGGAGAGGTGCTTGGG 60.179 60.000 0.00 0.00 0.00 4.12
1835 3394 0.179034 GGCTATGGAGAGGTGCTTGG 60.179 60.000 0.00 0.00 0.00 3.61
1836 3395 0.835941 AGGCTATGGAGAGGTGCTTG 59.164 55.000 0.00 0.00 0.00 4.01
1837 3396 1.488393 GAAGGCTATGGAGAGGTGCTT 59.512 52.381 0.00 0.00 0.00 3.91
1838 3397 1.127343 GAAGGCTATGGAGAGGTGCT 58.873 55.000 0.00 0.00 0.00 4.40
1839 3398 0.249657 CGAAGGCTATGGAGAGGTGC 60.250 60.000 0.00 0.00 0.00 5.01
1840 3399 0.249657 GCGAAGGCTATGGAGAGGTG 60.250 60.000 0.00 0.00 35.83 4.00
1841 3400 2.128729 GCGAAGGCTATGGAGAGGT 58.871 57.895 0.00 0.00 35.83 3.85
1859 3418 2.487532 AATCCTACGCCTCGACCGG 61.488 63.158 0.00 0.00 0.00 5.28
1860 3419 1.299165 CAATCCTACGCCTCGACCG 60.299 63.158 0.00 0.00 0.00 4.79
1861 3420 0.030908 CTCAATCCTACGCCTCGACC 59.969 60.000 0.00 0.00 0.00 4.79
1862 3421 0.595310 GCTCAATCCTACGCCTCGAC 60.595 60.000 0.00 0.00 0.00 4.20
1863 3422 1.734137 GCTCAATCCTACGCCTCGA 59.266 57.895 0.00 0.00 0.00 4.04
1864 3423 1.300233 GGCTCAATCCTACGCCTCG 60.300 63.158 0.00 0.00 39.42 4.63
1865 3424 1.300233 CGGCTCAATCCTACGCCTC 60.300 63.158 0.00 0.00 40.34 4.70
1866 3425 2.797278 CCGGCTCAATCCTACGCCT 61.797 63.158 0.00 0.00 40.34 5.52
1867 3426 2.280186 CCGGCTCAATCCTACGCC 60.280 66.667 0.00 0.00 39.14 5.68
1868 3427 2.280186 CCCGGCTCAATCCTACGC 60.280 66.667 0.00 0.00 0.00 4.42
1869 3428 2.088674 CTCCCCGGCTCAATCCTACG 62.089 65.000 0.00 0.00 0.00 3.51
1870 3429 1.749033 CTCCCCGGCTCAATCCTAC 59.251 63.158 0.00 0.00 0.00 3.18
1871 3430 2.140792 GCTCCCCGGCTCAATCCTA 61.141 63.158 0.00 0.00 0.00 2.94
1872 3431 3.483869 GCTCCCCGGCTCAATCCT 61.484 66.667 0.00 0.00 0.00 3.24
1873 3432 4.570874 GGCTCCCCGGCTCAATCC 62.571 72.222 0.00 0.00 34.85 3.01
1883 3442 3.462678 GAGTCGTCCAGGCTCCCC 61.463 72.222 0.00 0.00 45.56 4.81
1887 3446 0.033601 ATCAGAGAGTCGTCCAGGCT 60.034 55.000 0.00 0.00 37.62 4.58
1888 3447 0.102120 CATCAGAGAGTCGTCCAGGC 59.898 60.000 0.00 0.00 0.00 4.85
1889 3448 1.756430 TCATCAGAGAGTCGTCCAGG 58.244 55.000 0.00 0.00 0.00 4.45
1890 3449 3.857549 TTTCATCAGAGAGTCGTCCAG 57.142 47.619 0.00 0.00 0.00 3.86
1891 3450 3.763897 TCATTTCATCAGAGAGTCGTCCA 59.236 43.478 0.00 0.00 0.00 4.02
1892 3451 4.377839 TCATTTCATCAGAGAGTCGTCC 57.622 45.455 0.00 0.00 0.00 4.79
1893 3452 5.220378 GCTTTCATTTCATCAGAGAGTCGTC 60.220 44.000 0.00 0.00 0.00 4.20
1894 3453 4.629200 GCTTTCATTTCATCAGAGAGTCGT 59.371 41.667 0.00 0.00 0.00 4.34
1895 3454 4.628766 TGCTTTCATTTCATCAGAGAGTCG 59.371 41.667 0.00 0.00 0.00 4.18
1896 3455 5.445673 CGTGCTTTCATTTCATCAGAGAGTC 60.446 44.000 0.00 0.00 0.00 3.36
1897 3456 4.391216 CGTGCTTTCATTTCATCAGAGAGT 59.609 41.667 0.00 0.00 0.00 3.24
1898 3457 4.628766 TCGTGCTTTCATTTCATCAGAGAG 59.371 41.667 0.00 0.00 0.00 3.20
1899 3458 4.389992 GTCGTGCTTTCATTTCATCAGAGA 59.610 41.667 0.00 0.00 0.00 3.10
1900 3459 4.436584 GGTCGTGCTTTCATTTCATCAGAG 60.437 45.833 0.00 0.00 0.00 3.35
1901 3460 3.436704 GGTCGTGCTTTCATTTCATCAGA 59.563 43.478 0.00 0.00 0.00 3.27
1902 3461 3.438087 AGGTCGTGCTTTCATTTCATCAG 59.562 43.478 0.00 0.00 0.00 2.90
1903 3462 3.411446 AGGTCGTGCTTTCATTTCATCA 58.589 40.909 0.00 0.00 0.00 3.07
1904 3463 3.484229 CGAGGTCGTGCTTTCATTTCATC 60.484 47.826 0.00 0.00 34.11 2.92
1905 3464 2.416547 CGAGGTCGTGCTTTCATTTCAT 59.583 45.455 0.00 0.00 34.11 2.57
1906 3465 1.798223 CGAGGTCGTGCTTTCATTTCA 59.202 47.619 0.00 0.00 34.11 2.69
1907 3466 2.066262 TCGAGGTCGTGCTTTCATTTC 58.934 47.619 0.00 0.00 40.80 2.17
1908 3467 2.163818 TCGAGGTCGTGCTTTCATTT 57.836 45.000 0.00 0.00 40.80 2.32
1909 3468 1.798813 GTTCGAGGTCGTGCTTTCATT 59.201 47.619 0.00 0.00 40.80 2.57
1927 3486 1.467342 GGACAAAATTAGCGGCTCGTT 59.533 47.619 5.39 0.00 0.00 3.85
1931 3490 1.940613 GATCGGACAAAATTAGCGGCT 59.059 47.619 7.98 7.98 0.00 5.52
1945 3504 3.608796 TGTTGCATCATGAAAGATCGGA 58.391 40.909 0.00 0.00 0.00 4.55
1957 3516 5.878332 ATTTAGTCACGATTGTTGCATCA 57.122 34.783 0.00 0.00 0.00 3.07
2005 3564 5.423015 AGTTTCAGATTGCATGTATCTCGT 58.577 37.500 8.86 0.00 30.05 4.18
2015 3574 6.488344 TGTTGTTACCATAGTTTCAGATTGCA 59.512 34.615 0.00 0.00 0.00 4.08
2020 3579 7.225931 GTCAGTTGTTGTTACCATAGTTTCAGA 59.774 37.037 0.00 0.00 0.00 3.27
2029 3588 4.968259 TGCTAGTCAGTTGTTGTTACCAT 58.032 39.130 0.00 0.00 0.00 3.55
2065 3624 0.035152 TACCGACGAGAGGTGCCTTA 60.035 55.000 0.00 0.00 42.83 2.69
2084 3643 1.153823 GCGTGCTGGTGACGTCTAT 60.154 57.895 17.92 0.00 39.08 1.98
2114 3673 3.692406 GGCTTGAGGTCCGTCGGT 61.692 66.667 11.88 0.00 0.00 4.69
2203 3762 3.450904 ACTACCAACTGCTCCATTAGGA 58.549 45.455 0.00 0.00 43.21 2.94
2204 3763 3.452627 AGACTACCAACTGCTCCATTAGG 59.547 47.826 0.00 0.00 0.00 2.69
2205 3764 4.688021 GAGACTACCAACTGCTCCATTAG 58.312 47.826 0.00 0.00 0.00 1.73
2206 3765 3.130516 CGAGACTACCAACTGCTCCATTA 59.869 47.826 0.00 0.00 0.00 1.90
2207 3766 2.093973 CGAGACTACCAACTGCTCCATT 60.094 50.000 0.00 0.00 0.00 3.16
2212 4138 0.969894 AAGCGAGACTACCAACTGCT 59.030 50.000 0.00 0.00 0.00 4.24
2216 4142 2.288886 ACCTGAAAGCGAGACTACCAAC 60.289 50.000 0.00 0.00 0.00 3.77
2217 4143 1.968493 ACCTGAAAGCGAGACTACCAA 59.032 47.619 0.00 0.00 0.00 3.67
2219 4145 2.745515 AACCTGAAAGCGAGACTACC 57.254 50.000 0.00 0.00 0.00 3.18
2228 4154 3.550233 GGGACGAAGAAAAACCTGAAAGC 60.550 47.826 0.00 0.00 0.00 3.51
2229 4155 3.630312 TGGGACGAAGAAAAACCTGAAAG 59.370 43.478 0.00 0.00 0.00 2.62
2231 4157 2.946990 GTGGGACGAAGAAAAACCTGAA 59.053 45.455 0.00 0.00 0.00 3.02
2232 4158 2.567985 GTGGGACGAAGAAAAACCTGA 58.432 47.619 0.00 0.00 0.00 3.86
2233 4159 1.607148 GGTGGGACGAAGAAAAACCTG 59.393 52.381 0.00 0.00 0.00 4.00
2234 4160 1.213430 TGGTGGGACGAAGAAAAACCT 59.787 47.619 0.00 0.00 0.00 3.50
2235 4161 1.335810 GTGGTGGGACGAAGAAAAACC 59.664 52.381 0.00 0.00 0.00 3.27
2236 4162 2.294979 AGTGGTGGGACGAAGAAAAAC 58.705 47.619 0.00 0.00 0.00 2.43
2237 4163 2.721425 AGTGGTGGGACGAAGAAAAA 57.279 45.000 0.00 0.00 0.00 1.94
2238 4164 2.721425 AAGTGGTGGGACGAAGAAAA 57.279 45.000 0.00 0.00 0.00 2.29
2241 4167 0.032952 CGAAAGTGGTGGGACGAAGA 59.967 55.000 0.00 0.00 0.00 2.87
2242 4168 0.249741 ACGAAAGTGGTGGGACGAAG 60.250 55.000 0.00 0.00 46.97 3.79
2243 4169 1.824658 ACGAAAGTGGTGGGACGAA 59.175 52.632 0.00 0.00 46.97 3.85
2244 4170 3.541072 ACGAAAGTGGTGGGACGA 58.459 55.556 0.00 0.00 46.97 4.20
2268 4194 6.266168 TCTACGATGGTTAACCTACGAAAA 57.734 37.500 32.97 22.17 38.10 2.29
2294 4220 2.032987 GGGGGAGGCGACGAAAAA 59.967 61.111 0.00 0.00 0.00 1.94
2300 4226 2.595009 GATGAAGTGGGGGAGGCGAC 62.595 65.000 0.00 0.00 0.00 5.19
2301 4227 2.285368 ATGAAGTGGGGGAGGCGA 60.285 61.111 0.00 0.00 0.00 5.54
2302 4228 2.190578 GATGAAGTGGGGGAGGCG 59.809 66.667 0.00 0.00 0.00 5.52
2303 4229 2.190578 CGATGAAGTGGGGGAGGC 59.809 66.667 0.00 0.00 0.00 4.70
2304 4230 1.562672 AACCGATGAAGTGGGGGAGG 61.563 60.000 0.00 0.00 0.00 4.30
2306 4232 1.659022 TAAACCGATGAAGTGGGGGA 58.341 50.000 0.00 0.00 0.00 4.81
2307 4233 2.729028 ATAAACCGATGAAGTGGGGG 57.271 50.000 0.00 0.00 0.00 5.40
2308 4234 4.461081 TGAAAATAAACCGATGAAGTGGGG 59.539 41.667 0.00 0.00 0.00 4.96
2309 4235 5.183140 AGTGAAAATAAACCGATGAAGTGGG 59.817 40.000 0.00 0.00 0.00 4.61
2314 4866 6.294286 GGGTGAAGTGAAAATAAACCGATGAA 60.294 38.462 0.00 0.00 0.00 2.57
2320 4872 5.768164 TGAGAGGGTGAAGTGAAAATAAACC 59.232 40.000 0.00 0.00 0.00 3.27
2321 4873 6.262273 TGTGAGAGGGTGAAGTGAAAATAAAC 59.738 38.462 0.00 0.00 0.00 2.01
2323 4875 5.763204 GTGTGAGAGGGTGAAGTGAAAATAA 59.237 40.000 0.00 0.00 0.00 1.40
2328 4880 2.103094 CTGTGTGAGAGGGTGAAGTGAA 59.897 50.000 0.00 0.00 0.00 3.18
2331 4883 1.051812 CCTGTGTGAGAGGGTGAAGT 58.948 55.000 0.00 0.00 0.00 3.01
2332 4884 0.322975 CCCTGTGTGAGAGGGTGAAG 59.677 60.000 0.00 0.00 44.85 3.02
2333 4885 2.452116 CCCTGTGTGAGAGGGTGAA 58.548 57.895 0.00 0.00 44.85 3.18
2334 4886 4.215370 CCCTGTGTGAGAGGGTGA 57.785 61.111 0.00 0.00 44.85 4.02
2338 4890 2.667418 CCAGCCCTGTGTGAGAGG 59.333 66.667 0.00 0.00 0.00 3.69
2339 4891 2.667418 CCCAGCCCTGTGTGAGAG 59.333 66.667 0.00 0.00 0.00 3.20
2340 4892 3.640407 GCCCAGCCCTGTGTGAGA 61.640 66.667 0.00 0.00 0.00 3.27
2342 4894 2.769652 GAATGCCCAGCCCTGTGTGA 62.770 60.000 0.00 0.00 0.00 3.58
2343 4895 2.283388 AATGCCCAGCCCTGTGTG 60.283 61.111 0.00 0.00 0.00 3.82
2344 4896 2.036256 GAATGCCCAGCCCTGTGT 59.964 61.111 0.00 0.00 0.00 3.72
2345 4897 3.136123 CGAATGCCCAGCCCTGTG 61.136 66.667 0.00 0.00 0.00 3.66
2346 4898 4.431131 CCGAATGCCCAGCCCTGT 62.431 66.667 0.00 0.00 0.00 4.00
2347 4899 3.944250 AACCGAATGCCCAGCCCTG 62.944 63.158 0.00 0.00 0.00 4.45
2348 4900 1.858739 TAAACCGAATGCCCAGCCCT 61.859 55.000 0.00 0.00 0.00 5.19
2350 4902 1.975660 TATAAACCGAATGCCCAGCC 58.024 50.000 0.00 0.00 0.00 4.85
2351 4903 2.228822 CCATATAAACCGAATGCCCAGC 59.771 50.000 0.00 0.00 0.00 4.85
2353 4905 3.586470 ACCATATAAACCGAATGCCCA 57.414 42.857 0.00 0.00 0.00 5.36
2354 4906 3.886505 TGAACCATATAAACCGAATGCCC 59.113 43.478 0.00 0.00 0.00 5.36
2355 4907 5.705609 ATGAACCATATAAACCGAATGCC 57.294 39.130 0.00 0.00 0.00 4.40
2356 4908 6.608610 GGTATGAACCATATAAACCGAATGC 58.391 40.000 0.00 0.00 45.98 3.56
2380 4932 3.524763 AAACACCGAATAAACCGAACG 57.475 42.857 0.00 0.00 0.00 3.95
2381 4933 9.558648 AATTATAAAACACCGAATAAACCGAAC 57.441 29.630 0.00 0.00 0.00 3.95
2383 4935 9.771915 GAAATTATAAAACACCGAATAAACCGA 57.228 29.630 0.00 0.00 0.00 4.69
2384 4936 8.726836 CGAAATTATAAAACACCGAATAAACCG 58.273 33.333 0.00 0.00 0.00 4.44
2385 4937 9.012448 CCGAAATTATAAAACACCGAATAAACC 57.988 33.333 0.00 0.00 0.00 3.27
2386 4938 9.558648 ACCGAAATTATAAAACACCGAATAAAC 57.441 29.630 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.