Multiple sequence alignment - TraesCS3A01G315100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G315100 chr3A 100.000 3349 0 0 1 3349 556361111 556357763 0.000000e+00 6185.0
1 TraesCS3A01G315100 chr3A 100.000 3335 0 0 3734 7068 556357378 556354044 0.000000e+00 6159.0
2 TraesCS3A01G315100 chr3A 84.925 398 32 9 6689 7066 556341111 556340722 1.860000e-100 377.0
3 TraesCS3A01G315100 chr3A 82.781 302 28 10 6777 7067 556261221 556260933 1.520000e-61 248.0
4 TraesCS3A01G315100 chr3A 83.051 236 31 6 2248 2478 144472413 144472644 9.290000e-49 206.0
5 TraesCS3A01G315100 chr3B 91.155 3369 170 59 4 3310 561568034 561571336 0.000000e+00 4453.0
6 TraesCS3A01G315100 chr3B 93.505 2371 113 22 3917 6276 561589562 561591902 0.000000e+00 3487.0
7 TraesCS3A01G315100 chr3B 88.594 377 27 7 6703 7066 561840348 561840721 1.810000e-120 444.0
8 TraesCS3A01G315100 chr3B 86.133 375 21 11 6706 7066 561592152 561592509 6.690000e-100 375.0
9 TraesCS3A01G315100 chr3B 84.588 279 20 11 6781 7048 561888840 561889106 9.100000e-64 255.0
10 TraesCS3A01G315100 chr3B 84.434 212 24 6 6154 6357 561812556 561812766 4.320000e-47 200.0
11 TraesCS3A01G315100 chr3B 82.857 105 16 2 3065 3168 783280717 783280820 7.550000e-15 93.5
12 TraesCS3A01G315100 chr3D 90.186 2629 174 36 441 3064 429630081 429632630 0.000000e+00 3349.0
13 TraesCS3A01G315100 chr3D 94.105 1374 55 11 4790 6151 429632631 429633990 0.000000e+00 2065.0
14 TraesCS3A01G315100 chr3D 90.667 525 25 9 6558 7066 429636690 429637206 0.000000e+00 676.0
15 TraesCS3A01G315100 chr3D 84.590 305 22 11 6773 7067 429647136 429647425 5.400000e-71 279.0
16 TraesCS3A01G315100 chr3D 78.832 274 49 8 3065 3335 538377908 538378175 7.290000e-40 176.0
17 TraesCS3A01G315100 chr3D 78.049 246 42 12 3067 3312 38366600 38366367 2.050000e-30 145.0
18 TraesCS3A01G315100 chr3D 76.471 289 46 17 3065 3349 452628101 452627831 3.440000e-28 137.0
19 TraesCS3A01G315100 chr7D 87.361 989 121 2 3768 4753 173198037 173197050 0.000000e+00 1131.0
20 TraesCS3A01G315100 chr7D 86.288 897 117 5 3882 4774 621300969 621300075 0.000000e+00 970.0
21 TraesCS3A01G315100 chr7D 88.000 250 28 2 3752 4000 510380130 510380378 1.930000e-75 294.0
22 TraesCS3A01G315100 chr7D 85.227 264 36 1 3737 4000 96570915 96570655 1.170000e-67 268.0
23 TraesCS3A01G315100 chr7D 79.720 286 49 7 3065 3349 495331780 495332057 1.560000e-46 198.0
24 TraesCS3A01G315100 chr7D 77.003 287 48 14 3065 3349 609899515 609899245 1.590000e-31 148.0
25 TraesCS3A01G315100 chr2D 86.606 881 113 4 3887 4764 493073642 493074520 0.000000e+00 968.0
26 TraesCS3A01G315100 chr2D 81.311 305 36 8 3065 3349 563158685 563158988 1.980000e-55 228.0
27 TraesCS3A01G315100 chr2D 78.367 245 43 7 3107 3349 315110347 315110583 4.420000e-32 150.0
28 TraesCS3A01G315100 chr2D 76.389 288 48 15 3065 3349 636041954 636041684 3.440000e-28 137.0
29 TraesCS3A01G315100 chr1D 83.909 1013 153 7 3776 4784 120020646 120019640 0.000000e+00 959.0
30 TraesCS3A01G315100 chr1D 85.403 918 129 5 3869 4783 484432314 484433229 0.000000e+00 948.0
31 TraesCS3A01G315100 chr1D 81.791 335 40 13 2248 2577 1851712 1852030 1.960000e-65 261.0
32 TraesCS3A01G315100 chr1A 84.270 979 143 8 3765 4737 297698569 297699542 0.000000e+00 944.0
33 TraesCS3A01G315100 chr5D 85.398 904 126 5 3887 4786 72904377 72905278 0.000000e+00 933.0
34 TraesCS3A01G315100 chr1B 83.519 989 141 15 3800 4782 354507257 354506285 0.000000e+00 904.0
35 TraesCS3A01G315100 chr6A 79.920 498 57 20 2112 2577 48656047 48655561 6.840000e-85 326.0
36 TraesCS3A01G315100 chr6A 84.146 246 29 6 2343 2583 23689545 23689305 5.510000e-56 230.0
37 TraesCS3A01G315100 chr2A 81.908 304 41 10 2248 2543 748900207 748899910 1.970000e-60 244.0
38 TraesCS3A01G315100 chr4A 82.609 276 45 1 3737 4012 736608610 736608338 2.550000e-59 241.0
39 TraesCS3A01G315100 chr5B 80.636 346 36 15 5180 5524 441129501 441129816 9.160000e-59 239.0
40 TraesCS3A01G315100 chr6D 84.746 236 27 6 2248 2478 429164263 429164032 1.980000e-55 228.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G315100 chr3A 556354044 556361111 7067 True 6172 6185 100.000000 1 7068 2 chr3A.!!$R3 7067
1 TraesCS3A01G315100 chr3B 561568034 561571336 3302 False 4453 4453 91.155000 4 3310 1 chr3B.!!$F1 3306
2 TraesCS3A01G315100 chr3B 561589562 561592509 2947 False 1931 3487 89.819000 3917 7066 2 chr3B.!!$F6 3149
3 TraesCS3A01G315100 chr3D 429630081 429637206 7125 False 2030 3349 91.652667 441 7066 3 chr3D.!!$F3 6625
4 TraesCS3A01G315100 chr7D 173197050 173198037 987 True 1131 1131 87.361000 3768 4753 1 chr7D.!!$R2 985
5 TraesCS3A01G315100 chr7D 621300075 621300969 894 True 970 970 86.288000 3882 4774 1 chr7D.!!$R4 892
6 TraesCS3A01G315100 chr2D 493073642 493074520 878 False 968 968 86.606000 3887 4764 1 chr2D.!!$F2 877
7 TraesCS3A01G315100 chr1D 120019640 120020646 1006 True 959 959 83.909000 3776 4784 1 chr1D.!!$R1 1008
8 TraesCS3A01G315100 chr1D 484432314 484433229 915 False 948 948 85.403000 3869 4783 1 chr1D.!!$F2 914
9 TraesCS3A01G315100 chr1A 297698569 297699542 973 False 944 944 84.270000 3765 4737 1 chr1A.!!$F1 972
10 TraesCS3A01G315100 chr5D 72904377 72905278 901 False 933 933 85.398000 3887 4786 1 chr5D.!!$F1 899
11 TraesCS3A01G315100 chr1B 354506285 354507257 972 True 904 904 83.519000 3800 4782 1 chr1B.!!$R1 982

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 365 0.036875 CCCTTCAGTTCTCCACCCAC 59.963 60.0 0.00 0.0 0.00 4.61 F
438 483 0.456824 CTACCATCGGATCCATCGCG 60.457 60.0 13.41 0.0 0.00 5.87 F
2168 2216 0.249238 GCTCATTCGCTCTCCGATGT 60.249 55.0 0.00 0.0 46.81 3.06 F
2597 2647 0.325203 TGATCACCCCCTCGTCATGA 60.325 55.0 0.00 0.0 0.00 3.07 F
3973 4040 0.803117 CTAGTTCCGACTGCGAGTCA 59.197 55.0 14.09 0.0 45.30 3.41 F
4404 4474 0.654683 GATGTGCTCATCAGTTCGCC 59.345 55.0 20.95 0.0 46.78 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2168 2216 0.176219 GCCATGCCATAAGCTGCAAA 59.824 50.0 1.02 0.00 44.23 3.68 R
2287 2335 7.630242 TTCTTGCAATTAACCCTATCTTCAG 57.370 36.0 0.00 0.00 0.00 3.02 R
3963 4030 0.613292 ATGTCTCCCTGACTCGCAGT 60.613 55.0 0.00 0.00 45.54 4.40 R
3990 4057 0.673644 CCATCGGCTCGGTTTTCACT 60.674 55.0 0.00 0.00 0.00 3.41 R
5622 5701 0.028637 GAGCTGCGGCATTTCTTAGC 59.971 55.0 21.93 0.95 41.70 3.09 R
6231 7707 1.101635 GCTCCCCCTGAAAATACCGC 61.102 60.0 0.00 0.00 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.901840 CACCGATTCCGCCATGGG 60.902 66.667 15.13 3.37 38.76 4.00
78 85 4.865761 CGGCGAGGCGATTTCCGA 62.866 66.667 13.92 0.00 42.43 4.55
87 94 1.011904 CGATTTCCGATGCACTGCG 60.012 57.895 0.00 0.00 41.76 5.18
88 95 1.297893 GATTTCCGATGCACTGCGC 60.298 57.895 0.00 0.00 42.89 6.09
97 104 0.179129 ATGCACTGCGCTTTATTGCC 60.179 50.000 9.73 0.00 43.06 4.52
116 123 0.725117 CGTCATTTTACCTGGACGCC 59.275 55.000 0.00 0.00 45.18 5.68
134 141 0.890996 CCAAGCTCACTCACCCAACC 60.891 60.000 0.00 0.00 0.00 3.77
138 145 2.122769 TCACTCACCCAACCCCGA 60.123 61.111 0.00 0.00 0.00 5.14
142 149 2.852075 TCACCCAACCCCGAAGCT 60.852 61.111 0.00 0.00 0.00 3.74
164 172 2.483106 TCGTCTTGGTCTACAGTTCGAG 59.517 50.000 0.00 0.00 0.00 4.04
181 191 3.818787 GCCTGGTGCGCCATCTTG 61.819 66.667 21.54 7.96 45.05 3.02
183 193 1.078497 CCTGGTGCGCCATCTTGTA 60.078 57.895 21.54 0.00 45.05 2.41
192 202 5.339990 GTGCGCCATCTTGTACAATTAAAT 58.660 37.500 9.13 0.00 0.00 1.40
194 204 6.020678 GTGCGCCATCTTGTACAATTAAATTC 60.021 38.462 9.13 0.00 0.00 2.17
197 207 5.171337 GCCATCTTGTACAATTAAATTCGCG 59.829 40.000 9.13 0.00 0.00 5.87
208 218 7.758495 ACAATTAAATTCGCGGTTAGAGATTT 58.242 30.769 6.13 4.86 0.00 2.17
213 223 3.322211 TCGCGGTTAGAGATTTTTGGA 57.678 42.857 6.13 0.00 0.00 3.53
238 260 9.512435 GAGATTTCCATAATTTTGTCTGATGTG 57.488 33.333 0.00 0.00 0.00 3.21
239 261 8.472413 AGATTTCCATAATTTTGTCTGATGTGG 58.528 33.333 0.00 0.00 0.00 4.17
240 262 5.581126 TCCATAATTTTGTCTGATGTGGC 57.419 39.130 0.00 0.00 0.00 5.01
248 270 0.462759 GTCTGATGTGGCTGGTAGGC 60.463 60.000 0.00 0.00 41.77 3.93
256 294 1.609783 GGCTGGTAGGCAAGATGGT 59.390 57.895 0.00 0.00 40.97 3.55
272 310 3.131933 AGATGGTGTCGATGGAAGAGAAG 59.868 47.826 0.00 0.00 0.00 2.85
273 311 2.248248 TGGTGTCGATGGAAGAGAAGT 58.752 47.619 0.00 0.00 0.00 3.01
278 316 1.478510 TCGATGGAAGAGAAGTGAGCC 59.521 52.381 0.00 0.00 0.00 4.70
282 320 1.270907 GGAAGAGAAGTGAGCCAGGA 58.729 55.000 0.00 0.00 0.00 3.86
283 321 1.836802 GGAAGAGAAGTGAGCCAGGAT 59.163 52.381 0.00 0.00 0.00 3.24
294 332 2.768344 CCAGGATACGGCACCCCT 60.768 66.667 0.00 0.00 46.39 4.79
324 362 1.685820 CCCCCTTCAGTTCTCCACC 59.314 63.158 0.00 0.00 0.00 4.61
327 365 0.036875 CCCTTCAGTTCTCCACCCAC 59.963 60.000 0.00 0.00 0.00 4.61
337 375 2.306847 TCTCCACCCACTTTCTTTTGC 58.693 47.619 0.00 0.00 0.00 3.68
341 379 2.204237 CACCCACTTTCTTTTGCAAGC 58.796 47.619 0.00 0.00 0.00 4.01
365 403 5.203060 CTGGAAGCCCTGTAGATTAGTAC 57.797 47.826 0.00 0.00 0.00 2.73
366 404 4.616553 TGGAAGCCCTGTAGATTAGTACA 58.383 43.478 0.00 0.00 0.00 2.90
367 405 5.216622 TGGAAGCCCTGTAGATTAGTACAT 58.783 41.667 0.00 0.00 32.45 2.29
368 406 5.304614 TGGAAGCCCTGTAGATTAGTACATC 59.695 44.000 0.00 0.00 32.45 3.06
371 409 7.380423 AAGCCCTGTAGATTAGTACATCATT 57.620 36.000 0.00 0.00 32.45 2.57
372 410 7.380423 AGCCCTGTAGATTAGTACATCATTT 57.620 36.000 0.00 0.00 32.45 2.32
373 411 8.492415 AGCCCTGTAGATTAGTACATCATTTA 57.508 34.615 0.00 0.00 32.45 1.40
374 412 8.589338 AGCCCTGTAGATTAGTACATCATTTAG 58.411 37.037 0.00 0.00 32.45 1.85
375 413 7.332182 GCCCTGTAGATTAGTACATCATTTAGC 59.668 40.741 0.00 0.00 32.45 3.09
376 414 8.367911 CCCTGTAGATTAGTACATCATTTAGCA 58.632 37.037 0.00 0.00 32.45 3.49
417 462 5.217978 ACCAACAATTTCTTGTGATGCAT 57.782 34.783 0.00 0.00 44.83 3.96
419 464 6.158598 ACCAACAATTTCTTGTGATGCATAC 58.841 36.000 0.00 0.00 44.83 2.39
423 468 7.088589 ACAATTTCTTGTGATGCATACTACC 57.911 36.000 0.00 0.00 43.92 3.18
425 470 7.340232 ACAATTTCTTGTGATGCATACTACCAT 59.660 33.333 0.00 0.00 43.92 3.55
426 471 6.925610 TTTCTTGTGATGCATACTACCATC 57.074 37.500 0.00 0.00 38.60 3.51
428 473 3.385193 TGTGATGCATACTACCATCGG 57.615 47.619 0.00 0.00 40.48 4.18
429 474 2.962421 TGTGATGCATACTACCATCGGA 59.038 45.455 0.00 0.00 40.48 4.55
432 477 3.195610 TGATGCATACTACCATCGGATCC 59.804 47.826 0.00 0.00 40.48 3.36
433 478 2.604139 TGCATACTACCATCGGATCCA 58.396 47.619 13.41 0.00 0.00 3.41
434 479 3.173151 TGCATACTACCATCGGATCCAT 58.827 45.455 13.41 1.55 0.00 3.41
435 480 3.195610 TGCATACTACCATCGGATCCATC 59.804 47.826 13.41 0.00 0.00 3.51
436 481 3.735208 GCATACTACCATCGGATCCATCG 60.735 52.174 13.41 0.00 0.00 3.84
437 482 0.603569 ACTACCATCGGATCCATCGC 59.396 55.000 13.41 0.00 0.00 4.58
438 483 0.456824 CTACCATCGGATCCATCGCG 60.457 60.000 13.41 0.00 0.00 5.87
439 484 2.486636 TACCATCGGATCCATCGCGC 62.487 60.000 13.41 0.00 0.00 6.86
440 485 2.356194 CATCGGATCCATCGCGCA 60.356 61.111 13.41 0.00 0.00 6.09
441 486 2.356313 ATCGGATCCATCGCGCAC 60.356 61.111 13.41 0.00 0.00 5.34
442 487 3.150647 ATCGGATCCATCGCGCACA 62.151 57.895 13.41 0.00 0.00 4.57
443 488 3.333189 CGGATCCATCGCGCACAG 61.333 66.667 13.41 0.00 0.00 3.66
444 489 2.202932 GGATCCATCGCGCACAGT 60.203 61.111 8.75 0.00 0.00 3.55
445 490 1.815421 GGATCCATCGCGCACAGTT 60.815 57.895 8.75 0.00 0.00 3.16
446 491 1.638467 GATCCATCGCGCACAGTTC 59.362 57.895 8.75 0.00 0.00 3.01
447 492 1.079197 ATCCATCGCGCACAGTTCA 60.079 52.632 8.75 0.00 0.00 3.18
450 495 1.568612 CCATCGCGCACAGTTCAACT 61.569 55.000 8.75 0.00 0.00 3.16
453 498 1.067693 TCGCGCACAGTTCAACTATG 58.932 50.000 8.75 0.00 0.00 2.23
456 501 2.343101 GCGCACAGTTCAACTATGGTA 58.657 47.619 0.30 0.00 0.00 3.25
458 503 3.585862 CGCACAGTTCAACTATGGTAGT 58.414 45.455 0.00 0.00 41.73 2.73
463 508 7.148474 CGCACAGTTCAACTATGGTAGTAAATT 60.148 37.037 0.00 0.00 38.26 1.82
513 558 2.621338 CGCAGCTGGTTCATTCTTCTA 58.379 47.619 17.12 0.00 0.00 2.10
516 561 4.678044 CGCAGCTGGTTCATTCTTCTAGTA 60.678 45.833 17.12 0.00 0.00 1.82
517 562 4.568760 GCAGCTGGTTCATTCTTCTAGTAC 59.431 45.833 17.12 0.00 0.00 2.73
533 578 9.371136 TCTTCTAGTACAAATATGTTCAGCTTG 57.629 33.333 0.00 0.00 41.05 4.01
534 579 9.155975 CTTCTAGTACAAATATGTTCAGCTTGT 57.844 33.333 0.00 0.00 41.05 3.16
535 580 9.502091 TTCTAGTACAAATATGTTCAGCTTGTT 57.498 29.630 0.00 0.00 41.05 2.83
549 594 9.062524 TGTTCAGCTTGTTTTATACTGTATTGT 57.937 29.630 5.52 0.00 0.00 2.71
550 595 9.329913 GTTCAGCTTGTTTTATACTGTATTGTG 57.670 33.333 5.52 0.00 0.00 3.33
551 596 7.526608 TCAGCTTGTTTTATACTGTATTGTGC 58.473 34.615 5.52 2.51 0.00 4.57
552 597 7.174080 TCAGCTTGTTTTATACTGTATTGTGCA 59.826 33.333 5.52 0.00 0.00 4.57
553 598 7.807433 CAGCTTGTTTTATACTGTATTGTGCAA 59.193 33.333 5.52 6.53 0.00 4.08
554 599 8.023128 AGCTTGTTTTATACTGTATTGTGCAAG 58.977 33.333 19.08 19.08 33.71 4.01
555 600 7.807907 GCTTGTTTTATACTGTATTGTGCAAGT 59.192 33.333 21.47 0.00 33.29 3.16
556 601 9.329913 CTTGTTTTATACTGTATTGTGCAAGTC 57.670 33.333 5.52 0.00 0.00 3.01
557 602 8.384607 TGTTTTATACTGTATTGTGCAAGTCA 57.615 30.769 5.52 0.00 0.00 3.41
558 603 8.841300 TGTTTTATACTGTATTGTGCAAGTCAA 58.159 29.630 5.52 0.00 0.00 3.18
559 604 9.113876 GTTTTATACTGTATTGTGCAAGTCAAC 57.886 33.333 5.52 0.00 0.00 3.18
569 614 1.486310 TGCAAGTCAACCAGTCAGTCT 59.514 47.619 0.00 0.00 0.00 3.24
613 658 1.212751 GGAACCGTGGAAAGCATGC 59.787 57.895 10.51 10.51 0.00 4.06
614 659 1.212751 GAACCGTGGAAAGCATGCC 59.787 57.895 15.66 0.00 0.00 4.40
615 660 2.212900 GAACCGTGGAAAGCATGCCC 62.213 60.000 15.66 9.46 0.00 5.36
639 684 5.125417 CCCCTAATTATTTGTGGTCAGTGTG 59.875 44.000 0.00 0.00 0.00 3.82
640 685 5.710099 CCCTAATTATTTGTGGTCAGTGTGT 59.290 40.000 0.00 0.00 0.00 3.72
643 688 5.689383 ATTATTTGTGGTCAGTGTGTGTC 57.311 39.130 0.00 0.00 0.00 3.67
763 808 2.560105 GGAATCTTCAAAGCTGGCAACT 59.440 45.455 0.00 0.00 37.61 3.16
765 810 1.609208 TCTTCAAAGCTGGCAACTCC 58.391 50.000 0.00 0.00 37.61 3.85
767 812 1.172180 TTCAAAGCTGGCAACTCCGG 61.172 55.000 0.00 0.00 44.43 5.14
787 832 2.237143 GGATGTTCATGGTCTGTGGAGA 59.763 50.000 0.00 0.00 0.00 3.71
788 833 3.118112 GGATGTTCATGGTCTGTGGAGAT 60.118 47.826 0.00 0.00 0.00 2.75
791 836 5.282055 TGTTCATGGTCTGTGGAGATATC 57.718 43.478 0.00 0.00 0.00 1.63
799 844 3.005684 GTCTGTGGAGATATCTGCTGGAG 59.994 52.174 22.88 15.55 35.18 3.86
806 851 4.514816 GGAGATATCTGCTGGAGAAAAAGC 59.485 45.833 16.38 0.00 39.96 3.51
817 862 4.526970 TGGAGAAAAAGCTCATACCATCC 58.473 43.478 0.00 0.00 36.62 3.51
822 867 2.634815 AAGCTCATACCATCCTGCAG 57.365 50.000 6.78 6.78 0.00 4.41
831 876 0.940126 CCATCCTGCAGCGATTACAC 59.060 55.000 8.66 0.00 0.00 2.90
849 894 4.634012 ACACCAAGTATTCTGCTTACCA 57.366 40.909 0.00 0.00 0.00 3.25
855 900 5.121811 CAAGTATTCTGCTTACCATGCTCT 58.878 41.667 0.00 0.00 0.00 4.09
859 904 0.531532 CTGCTTACCATGCTCTCCCG 60.532 60.000 0.00 0.00 0.00 5.14
867 912 0.933097 CATGCTCTCCCGTTGATTCG 59.067 55.000 0.00 0.00 0.00 3.34
871 916 2.167693 TGCTCTCCCGTTGATTCGTTAT 59.832 45.455 0.00 0.00 0.00 1.89
872 917 2.795470 GCTCTCCCGTTGATTCGTTATC 59.205 50.000 0.00 0.00 0.00 1.75
873 918 3.043586 CTCTCCCGTTGATTCGTTATCG 58.956 50.000 0.00 0.00 35.94 2.92
897 942 4.439426 CGAGAAACTCACAGAGGTATGGAG 60.439 50.000 0.00 0.00 33.35 3.86
900 945 5.362430 AGAAACTCACAGAGGTATGGAGATC 59.638 44.000 0.00 0.00 33.35 2.75
901 946 3.571590 ACTCACAGAGGTATGGAGATCC 58.428 50.000 0.00 0.00 33.35 3.36
907 952 4.289934 ACAGAGGTATGGAGATCCGAGATA 59.710 45.833 0.00 0.00 39.43 1.98
909 954 5.890985 CAGAGGTATGGAGATCCGAGATATT 59.109 44.000 0.00 0.00 39.43 1.28
934 979 8.375493 TCTTATGTTATGTCCTCCTTTAGTGT 57.625 34.615 0.00 0.00 0.00 3.55
935 980 9.483489 TCTTATGTTATGTCCTCCTTTAGTGTA 57.517 33.333 0.00 0.00 0.00 2.90
965 1013 3.751518 TCTCCCTCTTAACTGTTTTGGC 58.248 45.455 0.00 0.00 0.00 4.52
1139 1187 7.643625 AATGAATCCATTTCTGATGGGCAGAG 61.644 42.308 5.30 0.00 42.39 3.35
1557 1605 2.735663 GAGCTATGATGATCCAGCAACG 59.264 50.000 15.64 0.00 32.21 4.10
1598 1646 7.360361 GGTTTTGGACCGAGCATAATTAATAG 58.640 38.462 0.00 0.00 39.00 1.73
1822 1870 5.432157 GTTCACTGAACATAACACAGTTCG 58.568 41.667 15.77 0.00 45.34 3.95
1989 2037 4.560108 GCAGCACAAGACCAATCAAATTCT 60.560 41.667 0.00 0.00 0.00 2.40
2096 2144 1.233019 CAGAAGCTGTCAGTTGTGGG 58.767 55.000 0.93 0.00 0.00 4.61
2168 2216 0.249238 GCTCATTCGCTCTCCGATGT 60.249 55.000 0.00 0.00 46.81 3.06
2597 2647 0.325203 TGATCACCCCCTCGTCATGA 60.325 55.000 0.00 0.00 0.00 3.07
2878 2928 7.333423 TGTGTTTAGCCAAGTAATGATAGTGAC 59.667 37.037 0.00 0.00 0.00 3.67
2991 3042 2.489938 TAGTTGCAACATCCTCCACC 57.510 50.000 30.11 0.04 0.00 4.61
3023 3074 3.244976 GTGTGGCAAATATGTTGTGCTC 58.755 45.455 0.00 0.00 38.36 4.26
3095 3146 2.696759 CGCCCAAAAACCTAGCCGG 61.697 63.158 0.00 0.00 39.35 6.13
3096 3147 3.001902 GCCCAAAAACCTAGCCGGC 62.002 63.158 21.89 21.89 35.61 6.13
3100 3151 3.931190 AAAAACCTAGCCGGCGGGG 62.931 63.158 33.40 31.73 35.61 5.73
3129 3180 4.400251 CTCCTCCCCTCCCACCGT 62.400 72.222 0.00 0.00 0.00 4.83
3194 3258 1.482954 TCCTCTCACCTGCATCTCAG 58.517 55.000 0.00 0.00 42.49 3.35
3227 3291 3.390521 CCTAGGCGTGAGGTGGCA 61.391 66.667 0.00 0.00 0.00 4.92
3228 3292 2.735772 CCTAGGCGTGAGGTGGCAT 61.736 63.158 0.00 0.00 0.00 4.40
3754 3818 4.643387 GGCGGTGGTTGCTCCTGT 62.643 66.667 0.80 0.00 37.07 4.00
3755 3819 3.050275 GCGGTGGTTGCTCCTGTC 61.050 66.667 0.80 0.00 37.07 3.51
3756 3820 2.738521 CGGTGGTTGCTCCTGTCG 60.739 66.667 0.80 0.00 37.07 4.35
3757 3821 2.358737 GGTGGTTGCTCCTGTCGG 60.359 66.667 0.80 0.00 37.07 4.79
3758 3822 3.050275 GTGGTTGCTCCTGTCGGC 61.050 66.667 0.80 0.00 37.07 5.54
3759 3823 4.680237 TGGTTGCTCCTGTCGGCG 62.680 66.667 0.00 0.00 37.07 6.46
3902 3969 0.898320 CGGTGGTGGTCATCTCTTCT 59.102 55.000 0.00 0.00 0.00 2.85
3904 3971 1.677217 GGTGGTGGTCATCTCTTCTGC 60.677 57.143 0.00 0.00 0.00 4.26
3963 4030 2.228059 GGATCCGTCATCTAGTTCCGA 58.772 52.381 0.00 0.00 0.00 4.55
3973 4040 0.803117 CTAGTTCCGACTGCGAGTCA 59.197 55.000 14.09 0.00 45.30 3.41
3990 4057 1.555075 GTCAGGGAGACATAGTTGCCA 59.445 52.381 0.00 0.00 46.77 4.92
4169 4237 1.478510 TCTCTCTTGGGAGCATCGTTC 59.521 52.381 0.00 0.00 39.31 3.95
4284 4352 3.194861 GTGCTACGATTTGTCATGCCTA 58.805 45.455 0.00 0.00 0.00 3.93
4404 4474 0.654683 GATGTGCTCATCAGTTCGCC 59.345 55.000 20.95 0.00 46.78 5.54
4504 4574 3.006728 AAGATGGGTCGGCGGGAA 61.007 61.111 7.21 0.00 0.00 3.97
4505 4575 2.530958 GAAGATGGGTCGGCGGGAAA 62.531 60.000 7.21 0.00 0.00 3.13
4951 5027 1.160137 GACTTGCAGCGAATTCAGGT 58.840 50.000 6.22 1.36 0.00 4.00
5110 5186 7.841222 AGCTTGGATTTCTTCCTATTTGGTATT 59.159 33.333 0.00 0.00 45.68 1.89
5174 5251 3.795688 TCTTCCATGCCTTCTTGAACT 57.204 42.857 0.00 0.00 0.00 3.01
5209 5286 3.401033 TTGCAAGACCAATCGAGAAGA 57.599 42.857 0.00 0.00 0.00 2.87
5254 5331 6.260050 TGCGTCTTAACATAATTGAAGGGATC 59.740 38.462 0.00 0.00 0.00 3.36
5293 5370 0.901827 TCCACAAGCATTCTCGGCTA 59.098 50.000 0.00 0.00 41.66 3.93
5365 5442 7.955185 ACTGATATGAACCCTAAGATCTCAGAT 59.045 37.037 0.00 0.00 32.71 2.90
5493 5570 7.180229 TGGAAGAACCACTATACTGAGAAATGA 59.820 37.037 0.00 0.00 44.64 2.57
5550 5629 1.978617 CATGGCCCCCGAATATGCC 60.979 63.158 0.00 0.00 44.27 4.40
5614 5693 1.067821 GGGTACTGCTTCTGGAGATCG 59.932 57.143 0.00 0.00 35.49 3.69
5622 5701 1.135915 CTTCTGGAGATCGTCAGTGGG 59.864 57.143 14.83 6.16 33.13 4.61
5642 5721 1.372582 CTAAGAAATGCCGCAGCTCA 58.627 50.000 0.00 0.00 40.80 4.26
5683 5762 1.450211 CTCCTTGGTCACGTGGGTT 59.550 57.895 17.00 0.00 0.00 4.11
5691 5770 2.171027 TGGTCACGTGGGTTAAAGTTCT 59.829 45.455 17.00 0.00 0.00 3.01
5701 5780 4.753107 TGGGTTAAAGTTCTAACAAGCTCG 59.247 41.667 0.00 0.00 34.10 5.03
5762 5843 4.818534 TTTGATGTCTGCAACTGAACTC 57.181 40.909 0.00 0.00 0.00 3.01
5803 5884 2.803155 AAGAAGGCAGATGGCGCGAA 62.803 55.000 12.10 0.00 46.16 4.70
5937 6018 6.073548 GCCGAAGTCATTTCCATGATTACTAG 60.074 42.308 0.00 0.00 41.64 2.57
6050 6131 7.909121 GCTCTCTGAATGATTTGTCAATTACTG 59.091 37.037 0.00 0.00 0.00 2.74
6073 6154 3.511477 CCTGGATGGCAGGTAGTACTAT 58.489 50.000 5.75 0.00 35.19 2.12
6074 6155 3.511934 CCTGGATGGCAGGTAGTACTATC 59.488 52.174 5.75 5.31 35.19 2.08
6075 6156 3.507411 TGGATGGCAGGTAGTACTATCC 58.493 50.000 9.63 10.11 34.60 2.59
6076 6157 3.116900 TGGATGGCAGGTAGTACTATCCA 60.117 47.826 14.59 14.59 40.00 3.41
6077 6158 4.097418 GGATGGCAGGTAGTACTATCCAT 58.903 47.826 19.77 19.77 36.39 3.41
6078 6159 4.532521 GGATGGCAGGTAGTACTATCCATT 59.467 45.833 20.25 10.94 34.89 3.16
6084 6176 7.450634 TGGCAGGTAGTACTATCCATTAGTAAG 59.549 40.741 9.63 0.00 43.40 2.34
6099 6191 7.015877 TCCATTAGTAAGGAGTGTTACAGTTGT 59.984 37.037 0.00 0.00 35.65 3.32
6157 6249 7.510407 TGTTATCCCATCATATTAAACGGACA 58.490 34.615 0.00 0.00 0.00 4.02
6159 6251 4.385825 TCCCATCATATTAAACGGACAGC 58.614 43.478 0.00 0.00 0.00 4.40
6160 6252 4.133820 CCCATCATATTAAACGGACAGCA 58.866 43.478 0.00 0.00 0.00 4.41
6161 6253 4.024048 CCCATCATATTAAACGGACAGCAC 60.024 45.833 0.00 0.00 0.00 4.40
6182 7658 5.003096 ACTTTGAAGTGATCCCAGGAATT 57.997 39.130 0.00 0.00 37.98 2.17
6183 7659 5.397360 ACTTTGAAGTGATCCCAGGAATTT 58.603 37.500 0.00 0.00 37.98 1.82
6184 7660 5.478332 ACTTTGAAGTGATCCCAGGAATTTC 59.522 40.000 0.00 0.00 37.98 2.17
6185 7661 4.934797 TGAAGTGATCCCAGGAATTTCT 57.065 40.909 0.00 0.00 0.00 2.52
6186 7662 4.592942 TGAAGTGATCCCAGGAATTTCTG 58.407 43.478 6.78 6.78 34.70 3.02
6187 7663 4.289410 TGAAGTGATCCCAGGAATTTCTGA 59.711 41.667 15.83 0.00 36.93 3.27
6188 7664 4.934797 AGTGATCCCAGGAATTTCTGAA 57.065 40.909 15.83 3.34 36.93 3.02
6189 7665 4.853007 AGTGATCCCAGGAATTTCTGAAG 58.147 43.478 15.83 6.37 36.93 3.02
6190 7666 4.290722 AGTGATCCCAGGAATTTCTGAAGT 59.709 41.667 15.83 0.00 36.93 3.01
6191 7667 4.397417 GTGATCCCAGGAATTTCTGAAGTG 59.603 45.833 15.83 0.00 36.93 3.16
6192 7668 2.795329 TCCCAGGAATTTCTGAAGTGC 58.205 47.619 15.83 0.00 36.93 4.40
6193 7669 2.376518 TCCCAGGAATTTCTGAAGTGCT 59.623 45.455 15.83 0.00 36.93 4.40
6194 7670 2.751806 CCCAGGAATTTCTGAAGTGCTC 59.248 50.000 15.83 0.00 36.93 4.26
6195 7671 2.417933 CCAGGAATTTCTGAAGTGCTCG 59.582 50.000 15.83 0.00 36.93 5.03
6196 7672 3.329386 CAGGAATTTCTGAAGTGCTCGA 58.671 45.455 8.15 0.00 36.93 4.04
6197 7673 3.937706 CAGGAATTTCTGAAGTGCTCGAT 59.062 43.478 8.15 0.00 36.93 3.59
6198 7674 4.033817 CAGGAATTTCTGAAGTGCTCGATC 59.966 45.833 8.15 0.00 36.93 3.69
6199 7675 4.081198 AGGAATTTCTGAAGTGCTCGATCT 60.081 41.667 0.00 0.00 23.90 2.75
6200 7676 4.269844 GGAATTTCTGAAGTGCTCGATCTC 59.730 45.833 0.00 0.00 0.00 2.75
6201 7677 3.942130 TTTCTGAAGTGCTCGATCTCA 57.058 42.857 0.00 0.00 0.00 3.27
6247 7723 0.033503 AAGGCGGTATTTTCAGGGGG 60.034 55.000 0.00 0.00 0.00 5.40
6249 7725 0.465642 GGCGGTATTTTCAGGGGGAG 60.466 60.000 0.00 0.00 0.00 4.30
6254 7730 2.644676 GTATTTTCAGGGGGAGCTGTC 58.355 52.381 0.00 0.00 0.00 3.51
6260 7736 1.542375 AGGGGGAGCTGTCATTGGT 60.542 57.895 0.00 0.00 0.00 3.67
6302 8072 7.852945 CAGTTCTAGTTTAACAAAACTGCTCTG 59.147 37.037 17.50 11.01 42.47 3.35
6306 8076 9.555727 TCTAGTTTAACAAAACTGCTCTGTAAT 57.444 29.630 12.54 0.00 42.47 1.89
6316 8086 1.065926 TGCTCTGTAATCTGCACCCAG 60.066 52.381 0.00 0.00 40.54 4.45
6326 8096 0.468029 CTGCACCCAGAAACCACCTT 60.468 55.000 0.00 0.00 41.77 3.50
6327 8097 0.754957 TGCACCCAGAAACCACCTTG 60.755 55.000 0.00 0.00 0.00 3.61
6328 8098 0.467290 GCACCCAGAAACCACCTTGA 60.467 55.000 0.00 0.00 0.00 3.02
6330 8100 0.179029 ACCCAGAAACCACCTTGACG 60.179 55.000 0.00 0.00 0.00 4.35
6333 8103 2.485835 CCCAGAAACCACCTTGACGTTA 60.486 50.000 0.00 0.00 0.00 3.18
6343 8117 4.022068 CCACCTTGACGTTACTGGTACTAA 60.022 45.833 4.29 0.00 0.00 2.24
6357 8131 5.900123 ACTGGTACTAATATCTGGCTGAGTT 59.100 40.000 0.00 0.76 0.00 3.01
6358 8132 6.041069 ACTGGTACTAATATCTGGCTGAGTTC 59.959 42.308 0.00 0.00 0.00 3.01
6359 8133 6.136857 TGGTACTAATATCTGGCTGAGTTCT 58.863 40.000 0.00 0.00 0.00 3.01
6361 8135 6.926272 GGTACTAATATCTGGCTGAGTTCTTG 59.074 42.308 0.00 0.00 0.00 3.02
6362 8136 5.923204 ACTAATATCTGGCTGAGTTCTTGG 58.077 41.667 0.00 0.00 0.00 3.61
6363 8137 5.663106 ACTAATATCTGGCTGAGTTCTTGGA 59.337 40.000 0.00 0.00 0.00 3.53
6364 8138 5.643421 AATATCTGGCTGAGTTCTTGGAT 57.357 39.130 0.00 0.00 0.00 3.41
6365 8139 6.753913 AATATCTGGCTGAGTTCTTGGATA 57.246 37.500 0.00 0.00 0.00 2.59
6366 8140 6.753913 ATATCTGGCTGAGTTCTTGGATAA 57.246 37.500 0.00 0.00 0.00 1.75
6367 8141 4.908601 TCTGGCTGAGTTCTTGGATAAA 57.091 40.909 0.00 0.00 0.00 1.40
6368 8142 5.241403 TCTGGCTGAGTTCTTGGATAAAA 57.759 39.130 0.00 0.00 0.00 1.52
6369 8143 5.003804 TCTGGCTGAGTTCTTGGATAAAAC 58.996 41.667 0.00 0.00 0.00 2.43
6370 8144 4.724399 TGGCTGAGTTCTTGGATAAAACA 58.276 39.130 0.00 0.00 0.00 2.83
6371 8145 5.324409 TGGCTGAGTTCTTGGATAAAACAT 58.676 37.500 0.00 0.00 0.00 2.71
6373 8147 6.945435 TGGCTGAGTTCTTGGATAAAACATAA 59.055 34.615 0.00 0.00 0.00 1.90
6374 8148 7.450014 TGGCTGAGTTCTTGGATAAAACATAAA 59.550 33.333 0.00 0.00 0.00 1.40
6375 8149 8.470002 GGCTGAGTTCTTGGATAAAACATAAAT 58.530 33.333 0.00 0.00 0.00 1.40
6376 8150 9.508567 GCTGAGTTCTTGGATAAAACATAAATC 57.491 33.333 0.00 0.00 0.00 2.17
6398 8172 6.523676 TCAAATTCCATTTCTTTTTGTCGC 57.476 33.333 0.00 0.00 0.00 5.19
6399 8173 6.279882 TCAAATTCCATTTCTTTTTGTCGCT 58.720 32.000 0.00 0.00 0.00 4.93
6400 8174 6.760770 TCAAATTCCATTTCTTTTTGTCGCTT 59.239 30.769 0.00 0.00 0.00 4.68
6402 8176 8.547069 CAAATTCCATTTCTTTTTGTCGCTTTA 58.453 29.630 0.00 0.00 0.00 1.85
6403 8177 8.831715 AATTCCATTTCTTTTTGTCGCTTTAT 57.168 26.923 0.00 0.00 0.00 1.40
6404 8178 8.831715 ATTCCATTTCTTTTTGTCGCTTTATT 57.168 26.923 0.00 0.00 0.00 1.40
6405 8179 9.921637 ATTCCATTTCTTTTTGTCGCTTTATTA 57.078 25.926 0.00 0.00 0.00 0.98
6406 8180 8.736751 TCCATTTCTTTTTGTCGCTTTATTAC 57.263 30.769 0.00 0.00 0.00 1.89
6407 8181 8.353684 TCCATTTCTTTTTGTCGCTTTATTACA 58.646 29.630 0.00 0.00 0.00 2.41
6409 8183 9.993881 CATTTCTTTTTGTCGCTTTATTACAAG 57.006 29.630 0.00 0.00 34.80 3.16
6414 8188 9.820229 CTTTTTGTCGCTTTATTACAAGTATGA 57.180 29.630 0.00 0.00 34.80 2.15
6415 8189 9.601971 TTTTTGTCGCTTTATTACAAGTATGAC 57.398 29.630 0.00 0.00 34.80 3.06
6416 8190 8.542497 TTTGTCGCTTTATTACAAGTATGACT 57.458 30.769 0.00 0.00 34.80 3.41
6418 8192 6.533723 TGTCGCTTTATTACAAGTATGACTGG 59.466 38.462 0.00 0.00 0.00 4.00
6419 8193 6.755141 GTCGCTTTATTACAAGTATGACTGGA 59.245 38.462 0.00 0.00 0.00 3.86
6420 8194 6.978659 TCGCTTTATTACAAGTATGACTGGAG 59.021 38.462 0.00 0.00 0.00 3.86
6422 8196 7.048512 GCTTTATTACAAGTATGACTGGAGGT 58.951 38.462 0.00 0.00 0.00 3.85
6425 8199 3.594603 ACAAGTATGACTGGAGGTTCG 57.405 47.619 0.00 0.00 0.00 3.95
6427 8201 3.769844 ACAAGTATGACTGGAGGTTCGAT 59.230 43.478 0.00 0.00 0.00 3.59
6428 8202 4.115516 CAAGTATGACTGGAGGTTCGATG 58.884 47.826 0.00 0.00 0.00 3.84
6429 8203 3.366396 AGTATGACTGGAGGTTCGATGT 58.634 45.455 0.00 0.00 0.00 3.06
6430 8204 3.769844 AGTATGACTGGAGGTTCGATGTT 59.230 43.478 0.00 0.00 0.00 2.71
6432 8206 2.766313 TGACTGGAGGTTCGATGTTTG 58.234 47.619 0.00 0.00 0.00 2.93
6433 8207 2.076863 GACTGGAGGTTCGATGTTTGG 58.923 52.381 0.00 0.00 0.00 3.28
6434 8208 1.697432 ACTGGAGGTTCGATGTTTGGA 59.303 47.619 0.00 0.00 0.00 3.53
6435 8209 2.076863 CTGGAGGTTCGATGTTTGGAC 58.923 52.381 0.00 0.00 0.00 4.02
6436 8210 1.271163 TGGAGGTTCGATGTTTGGACC 60.271 52.381 0.00 0.00 0.00 4.46
6437 8211 1.076332 GAGGTTCGATGTTTGGACCG 58.924 55.000 0.00 0.00 0.00 4.79
6438 8212 0.395312 AGGTTCGATGTTTGGACCGT 59.605 50.000 0.00 0.00 0.00 4.83
6439 8213 0.794473 GGTTCGATGTTTGGACCGTC 59.206 55.000 0.00 0.00 0.00 4.79
6440 8214 1.504359 GTTCGATGTTTGGACCGTCA 58.496 50.000 0.00 0.00 0.00 4.35
6442 8216 0.389757 TCGATGTTTGGACCGTCACA 59.610 50.000 0.00 0.00 0.00 3.58
6443 8217 1.202545 TCGATGTTTGGACCGTCACAA 60.203 47.619 0.00 0.00 0.00 3.33
6444 8218 1.070175 CGATGTTTGGACCGTCACAAC 60.070 52.381 0.00 3.31 0.00 3.32
6445 8219 2.218603 GATGTTTGGACCGTCACAACT 58.781 47.619 0.00 0.00 0.00 3.16
6448 8222 1.329599 GTTTGGACCGTCACAACTCAC 59.670 52.381 0.00 0.00 0.00 3.51
6449 8223 0.537653 TTGGACCGTCACAACTCACA 59.462 50.000 0.00 0.00 0.00 3.58
6450 8224 0.104120 TGGACCGTCACAACTCACAG 59.896 55.000 0.00 0.00 0.00 3.66
6451 8225 0.600255 GGACCGTCACAACTCACAGG 60.600 60.000 0.00 0.00 0.00 4.00
6454 8228 1.068127 ACCGTCACAACTCACAGGTAC 59.932 52.381 0.00 0.00 0.00 3.34
6455 8229 1.340248 CCGTCACAACTCACAGGTACT 59.660 52.381 0.00 0.00 43.88 2.73
6456 8230 2.607282 CCGTCACAACTCACAGGTACTC 60.607 54.545 0.00 0.00 34.60 2.59
6457 8231 2.034179 CGTCACAACTCACAGGTACTCA 59.966 50.000 0.00 0.00 34.60 3.41
6458 8232 3.490249 CGTCACAACTCACAGGTACTCAA 60.490 47.826 0.00 0.00 34.60 3.02
6459 8233 4.051922 GTCACAACTCACAGGTACTCAAG 58.948 47.826 0.00 0.00 34.60 3.02
6460 8234 3.704566 TCACAACTCACAGGTACTCAAGT 59.295 43.478 0.00 0.00 34.60 3.16
6462 8236 4.508124 CACAACTCACAGGTACTCAAGTTC 59.492 45.833 0.00 0.00 34.60 3.01
6463 8237 4.058817 CAACTCACAGGTACTCAAGTTCC 58.941 47.826 0.00 0.00 34.60 3.62
6464 8238 3.577919 ACTCACAGGTACTCAAGTTCCT 58.422 45.455 2.73 2.73 45.11 3.36
6468 8242 1.729586 AGGTACTCAAGTTCCTGCCA 58.270 50.000 7.46 0.00 43.03 4.92
6470 8244 1.348036 GGTACTCAAGTTCCTGCCACT 59.652 52.381 0.00 0.00 33.34 4.00
6471 8245 2.224548 GGTACTCAAGTTCCTGCCACTT 60.225 50.000 0.00 0.00 34.67 3.16
6472 8246 2.736670 ACTCAAGTTCCTGCCACTTT 57.263 45.000 0.00 0.00 31.83 2.66
6473 8247 2.576615 ACTCAAGTTCCTGCCACTTTC 58.423 47.619 0.00 0.00 31.83 2.62
6474 8248 2.173569 ACTCAAGTTCCTGCCACTTTCT 59.826 45.455 0.00 0.00 31.83 2.52
6475 8249 2.551459 CTCAAGTTCCTGCCACTTTCTG 59.449 50.000 0.00 0.00 31.83 3.02
6476 8250 1.000938 CAAGTTCCTGCCACTTTCTGC 60.001 52.381 0.00 0.00 31.83 4.26
6477 8251 0.183492 AGTTCCTGCCACTTTCTGCA 59.817 50.000 0.00 0.00 35.86 4.41
6482 8256 2.719376 TGCCACTTTCTGCAGGAAC 58.281 52.632 15.13 0.00 33.13 3.62
6483 8257 0.183492 TGCCACTTTCTGCAGGAACT 59.817 50.000 15.13 0.00 43.88 3.01
6485 8259 1.807142 GCCACTTTCTGCAGGAACTAC 59.193 52.381 15.13 0.00 36.02 2.73
6486 8260 2.551071 GCCACTTTCTGCAGGAACTACT 60.551 50.000 15.13 0.00 36.02 2.57
6487 8261 3.744660 CCACTTTCTGCAGGAACTACTT 58.255 45.455 15.13 0.00 36.02 2.24
6489 8263 3.499918 CACTTTCTGCAGGAACTACTTGG 59.500 47.826 15.13 0.00 36.02 3.61
6490 8264 2.859165 TTCTGCAGGAACTACTTGGG 57.141 50.000 15.13 0.00 36.02 4.12
6491 8265 2.024176 TCTGCAGGAACTACTTGGGA 57.976 50.000 15.13 0.00 36.02 4.37
6492 8266 2.334977 TCTGCAGGAACTACTTGGGAA 58.665 47.619 15.13 0.00 36.02 3.97
6524 8299 0.179240 GCTGCGTTCTCGTGTGATTG 60.179 55.000 0.00 0.00 39.49 2.67
6525 8300 1.139989 CTGCGTTCTCGTGTGATTGT 58.860 50.000 0.00 0.00 39.49 2.71
6527 8302 2.923655 CTGCGTTCTCGTGTGATTGTAT 59.076 45.455 0.00 0.00 39.49 2.29
6610 9009 3.498777 TCGCGGATACAAGATCTAGAGTG 59.501 47.826 6.13 0.00 0.00 3.51
6625 9024 6.007485 TCTAGAGTGACTGATACACTGGAT 57.993 41.667 0.00 0.00 46.57 3.41
6644 9043 0.317160 TACTGAACTGCACTGACCGG 59.683 55.000 0.00 0.00 0.00 5.28
6732 9206 6.285224 TCAATTCGTTCTTGTTTCTCCACTA 58.715 36.000 0.00 0.00 0.00 2.74
6771 9245 4.574599 ACATGGAGCAAGACAGTTTTTC 57.425 40.909 0.00 0.00 0.00 2.29
6788 9274 1.581934 TTCAAGTGAGCAACGTGAGG 58.418 50.000 7.89 0.00 46.03 3.86
6816 9302 2.588464 TTAGGCCCGGTCAAAATCAA 57.412 45.000 0.00 0.00 0.00 2.57
6843 9329 4.378030 GCGGTCGAAGAATATTACAGTACG 59.622 45.833 0.00 0.00 39.69 3.67
6917 9404 3.595173 TGTTAGGAACGACATGTCCATG 58.405 45.455 20.03 8.85 44.15 3.66
6974 9461 2.989639 CCGTCTCCAAGGCCATGA 59.010 61.111 10.18 0.00 0.00 3.07
7001 9488 0.107993 CATGGCGTCACACTCTCCAT 60.108 55.000 0.00 0.00 37.99 3.41
7011 9498 2.294791 CACACTCTCCATCCTATCGACC 59.705 54.545 0.00 0.00 0.00 4.79
7015 9502 3.117474 ACTCTCCATCCTATCGACCTTCA 60.117 47.826 0.00 0.00 0.00 3.02
7028 9515 0.039074 ACCTTCAAGTGTCGAGCTCG 60.039 55.000 30.03 30.03 41.45 5.03
7063 9551 2.203084 GGGCGAGGGCTAAGCTTC 60.203 66.667 0.00 0.00 39.81 3.86
7064 9552 2.736826 GGGCGAGGGCTAAGCTTCT 61.737 63.158 0.00 0.00 39.81 2.85
7065 9553 1.227409 GGCGAGGGCTAAGCTTCTC 60.227 63.158 0.00 2.12 39.81 2.87
7066 9554 1.681486 GGCGAGGGCTAAGCTTCTCT 61.681 60.000 0.00 0.00 39.81 3.10
7067 9555 0.176910 GCGAGGGCTAAGCTTCTCTT 59.823 55.000 0.00 0.00 38.79 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.901840 CCATGGCGGAATCGGTGG 60.902 66.667 0.00 0.00 36.56 4.61
62 69 2.280186 ATCGGAAATCGCCTCGCC 60.280 61.111 0.00 0.00 39.05 5.54
87 94 4.798387 CAGGTAAAATGACGGCAATAAAGC 59.202 41.667 0.00 0.00 0.00 3.51
88 95 5.124776 TCCAGGTAAAATGACGGCAATAAAG 59.875 40.000 0.00 0.00 0.00 1.85
116 123 0.890996 GGGTTGGGTGAGTGAGCTTG 60.891 60.000 0.00 0.00 0.00 4.01
138 145 2.628657 ACTGTAGACCAAGACGAAGCTT 59.371 45.455 0.00 0.00 0.00 3.74
142 149 2.880268 TCGAACTGTAGACCAAGACGAA 59.120 45.455 0.00 0.00 0.00 3.85
181 191 7.225523 TCTCTAACCGCGAATTTAATTGTAC 57.774 36.000 8.23 0.00 0.00 2.90
183 193 6.920569 ATCTCTAACCGCGAATTTAATTGT 57.079 33.333 8.23 0.00 0.00 2.71
192 202 3.666274 TCCAAAAATCTCTAACCGCGAA 58.334 40.909 8.23 0.00 0.00 4.70
194 204 3.259064 TCTCCAAAAATCTCTAACCGCG 58.741 45.455 0.00 0.00 0.00 6.46
213 223 8.472413 CCACATCAGACAAAATTATGGAAATCT 58.528 33.333 0.00 0.00 0.00 2.40
221 243 5.018809 ACCAGCCACATCAGACAAAATTAT 58.981 37.500 0.00 0.00 0.00 1.28
231 253 0.035152 TTGCCTACCAGCCACATCAG 60.035 55.000 0.00 0.00 0.00 2.90
234 256 0.921896 ATCTTGCCTACCAGCCACAT 59.078 50.000 0.00 0.00 0.00 3.21
238 260 0.749454 CACCATCTTGCCTACCAGCC 60.749 60.000 0.00 0.00 0.00 4.85
239 261 0.035056 ACACCATCTTGCCTACCAGC 60.035 55.000 0.00 0.00 0.00 4.85
240 262 1.740380 CGACACCATCTTGCCTACCAG 60.740 57.143 0.00 0.00 0.00 4.00
248 270 3.118992 TCTCTTCCATCGACACCATCTTG 60.119 47.826 0.00 0.00 0.00 3.02
251 273 3.118956 ACTTCTCTTCCATCGACACCATC 60.119 47.826 0.00 0.00 0.00 3.51
256 294 2.094494 GCTCACTTCTCTTCCATCGACA 60.094 50.000 0.00 0.00 0.00 4.35
278 316 2.808206 GGAGGGGTGCCGTATCCTG 61.808 68.421 0.00 0.00 0.00 3.86
282 320 4.103928 AGGGGAGGGGTGCCGTAT 62.104 66.667 0.00 0.00 0.00 3.06
283 321 4.791069 GAGGGGAGGGGTGCCGTA 62.791 72.222 0.00 0.00 0.00 4.02
312 350 2.408565 AGAAAGTGGGTGGAGAACTGA 58.591 47.619 0.00 0.00 0.00 3.41
317 355 2.306847 GCAAAAGAAAGTGGGTGGAGA 58.693 47.619 0.00 0.00 0.00 3.71
324 362 0.854705 GCGCTTGCAAAAGAAAGTGG 59.145 50.000 0.00 0.00 38.92 4.00
327 365 1.134226 CCAGCGCTTGCAAAAGAAAG 58.866 50.000 7.50 0.00 42.66 2.62
341 379 0.179000 AATCTACAGGGCTTCCAGCG 59.821 55.000 0.00 0.00 43.62 5.18
350 388 8.367911 TGCTAAATGATGTACTAATCTACAGGG 58.632 37.037 0.00 0.00 30.12 4.45
360 398 9.002600 CCATGCTAATTGCTAAATGATGTACTA 57.997 33.333 0.00 0.00 43.37 1.82
361 399 7.503566 ACCATGCTAATTGCTAAATGATGTACT 59.496 33.333 0.00 0.00 43.37 2.73
363 401 7.822161 ACCATGCTAATTGCTAAATGATGTA 57.178 32.000 0.00 0.00 43.37 2.29
364 402 6.720112 ACCATGCTAATTGCTAAATGATGT 57.280 33.333 0.00 0.00 43.37 3.06
365 403 8.355169 AGTTACCATGCTAATTGCTAAATGATG 58.645 33.333 0.00 0.00 43.37 3.07
366 404 8.469309 AGTTACCATGCTAATTGCTAAATGAT 57.531 30.769 0.00 0.00 43.37 2.45
367 405 7.880160 AGTTACCATGCTAATTGCTAAATGA 57.120 32.000 0.00 0.00 43.37 2.57
368 406 8.840321 AGTAGTTACCATGCTAATTGCTAAATG 58.160 33.333 0.00 0.00 43.37 2.32
371 409 8.882415 GTAGTAGTTACCATGCTAATTGCTAA 57.118 34.615 3.70 0.00 43.37 3.09
390 435 7.023575 GCATCACAAGAAATTGTTGGTAGTAG 58.976 38.462 7.76 0.00 31.86 2.57
392 437 5.301551 TGCATCACAAGAAATTGTTGGTAGT 59.698 36.000 7.76 0.00 31.86 2.73
395 440 4.669206 TGCATCACAAGAAATTGTTGGT 57.331 36.364 7.76 0.00 31.86 3.67
396 441 6.392354 AGTATGCATCACAAGAAATTGTTGG 58.608 36.000 0.19 0.00 31.86 3.77
398 443 7.176515 TGGTAGTATGCATCACAAGAAATTGTT 59.823 33.333 0.19 0.00 31.86 2.83
401 446 7.254898 CGATGGTAGTATGCATCACAAGAAATT 60.255 37.037 0.19 0.00 0.00 1.82
402 447 6.203530 CGATGGTAGTATGCATCACAAGAAAT 59.796 38.462 0.19 0.00 0.00 2.17
403 448 5.523552 CGATGGTAGTATGCATCACAAGAAA 59.476 40.000 0.19 0.00 0.00 2.52
404 449 5.049828 CGATGGTAGTATGCATCACAAGAA 58.950 41.667 0.19 0.00 0.00 2.52
405 450 4.501400 CCGATGGTAGTATGCATCACAAGA 60.501 45.833 0.19 0.00 0.00 3.02
417 462 1.816835 GCGATGGATCCGATGGTAGTA 59.183 52.381 7.39 0.00 0.00 1.82
419 464 0.456824 CGCGATGGATCCGATGGTAG 60.457 60.000 7.39 0.00 0.00 3.18
423 468 2.356194 TGCGCGATGGATCCGATG 60.356 61.111 12.10 0.00 0.00 3.84
425 470 3.773262 CTGTGCGCGATGGATCCGA 62.773 63.158 12.10 0.00 0.00 4.55
426 471 3.333189 CTGTGCGCGATGGATCCG 61.333 66.667 12.10 0.00 0.00 4.18
428 473 1.083806 TGAACTGTGCGCGATGGATC 61.084 55.000 12.10 0.19 0.00 3.36
429 474 0.673333 TTGAACTGTGCGCGATGGAT 60.673 50.000 12.10 0.00 0.00 3.41
432 477 1.067693 TAGTTGAACTGTGCGCGATG 58.932 50.000 12.10 0.00 0.00 3.84
433 478 1.660607 CATAGTTGAACTGTGCGCGAT 59.339 47.619 12.10 0.00 30.78 4.58
434 479 1.067693 CATAGTTGAACTGTGCGCGA 58.932 50.000 12.10 0.00 30.78 5.87
435 480 0.095245 CCATAGTTGAACTGTGCGCG 59.905 55.000 15.50 0.00 36.21 6.86
436 481 1.156736 ACCATAGTTGAACTGTGCGC 58.843 50.000 15.50 0.00 36.21 6.09
437 482 3.585862 ACTACCATAGTTGAACTGTGCG 58.414 45.455 15.50 11.44 36.21 5.34
438 483 7.611213 ATTTACTACCATAGTTGAACTGTGC 57.389 36.000 15.50 0.00 40.14 4.57
483 528 4.695231 CAGCTGCGCCTGTGCAAC 62.695 66.667 4.18 2.36 45.74 4.17
509 554 9.502091 AACAAGCTGAACATATTTGTACTAGAA 57.498 29.630 0.00 0.00 34.06 2.10
527 572 7.304735 TGCACAATACAGTATAAAACAAGCTG 58.695 34.615 0.00 0.00 0.00 4.24
528 573 7.447374 TGCACAATACAGTATAAAACAAGCT 57.553 32.000 0.00 0.00 0.00 3.74
530 575 9.329913 GACTTGCACAATACAGTATAAAACAAG 57.670 33.333 17.01 17.01 36.56 3.16
531 576 8.841300 TGACTTGCACAATACAGTATAAAACAA 58.159 29.630 0.00 0.00 0.00 2.83
533 578 9.113876 GTTGACTTGCACAATACAGTATAAAAC 57.886 33.333 0.00 0.00 0.00 2.43
534 579 8.293867 GGTTGACTTGCACAATACAGTATAAAA 58.706 33.333 0.00 0.00 0.00 1.52
535 580 7.445707 TGGTTGACTTGCACAATACAGTATAAA 59.554 33.333 0.00 0.00 0.00 1.40
537 582 6.468543 TGGTTGACTTGCACAATACAGTATA 58.531 36.000 0.00 0.00 0.00 1.47
539 584 4.709250 TGGTTGACTTGCACAATACAGTA 58.291 39.130 0.00 0.00 0.00 2.74
540 585 3.550820 TGGTTGACTTGCACAATACAGT 58.449 40.909 0.00 0.00 0.00 3.55
542 587 3.550820 ACTGGTTGACTTGCACAATACA 58.449 40.909 0.00 0.00 0.00 2.29
543 588 3.563808 TGACTGGTTGACTTGCACAATAC 59.436 43.478 0.00 0.00 0.00 1.89
544 589 3.814625 TGACTGGTTGACTTGCACAATA 58.185 40.909 0.00 0.00 0.00 1.90
545 590 2.620115 CTGACTGGTTGACTTGCACAAT 59.380 45.455 0.00 0.00 0.00 2.71
546 591 2.016318 CTGACTGGTTGACTTGCACAA 58.984 47.619 0.00 0.00 0.00 3.33
547 592 1.065491 ACTGACTGGTTGACTTGCACA 60.065 47.619 0.00 0.00 0.00 4.57
548 593 1.599542 GACTGACTGGTTGACTTGCAC 59.400 52.381 0.00 0.00 0.00 4.57
549 594 1.486310 AGACTGACTGGTTGACTTGCA 59.514 47.619 0.00 0.00 0.00 4.08
550 595 2.139118 GAGACTGACTGGTTGACTTGC 58.861 52.381 0.00 0.00 0.00 4.01
551 596 2.760374 GGAGACTGACTGGTTGACTTG 58.240 52.381 0.00 0.00 0.00 3.16
552 597 1.341531 CGGAGACTGACTGGTTGACTT 59.658 52.381 0.00 0.00 0.00 3.01
553 598 0.962489 CGGAGACTGACTGGTTGACT 59.038 55.000 0.00 0.00 0.00 3.41
554 599 0.038159 CCGGAGACTGACTGGTTGAC 60.038 60.000 0.00 0.00 0.00 3.18
555 600 0.469331 ACCGGAGACTGACTGGTTGA 60.469 55.000 9.46 0.00 43.52 3.18
556 601 0.038159 GACCGGAGACTGACTGGTTG 60.038 60.000 9.46 0.00 45.63 3.77
557 602 0.469331 TGACCGGAGACTGACTGGTT 60.469 55.000 9.46 0.00 45.63 3.67
559 604 0.679505 TTTGACCGGAGACTGACTGG 59.320 55.000 9.46 0.00 39.46 4.00
569 614 2.298163 GAGGTAGTGAGTTTTGACCGGA 59.702 50.000 9.46 0.00 35.24 5.14
614 659 4.644685 CACTGACCACAAATAATTAGGGGG 59.355 45.833 2.25 2.25 0.00 5.40
615 660 5.125417 CACACTGACCACAAATAATTAGGGG 59.875 44.000 0.00 0.00 0.00 4.79
639 684 9.171701 GTCTGTAGAAGAATAATCATACGACAC 57.828 37.037 0.00 0.00 36.40 3.67
640 685 8.899771 TGTCTGTAGAAGAATAATCATACGACA 58.100 33.333 0.00 0.00 36.40 4.35
669 714 1.272928 TGCTGGGATGTGACTCTCTCT 60.273 52.381 0.00 0.00 0.00 3.10
670 715 1.189752 TGCTGGGATGTGACTCTCTC 58.810 55.000 0.00 0.00 0.00 3.20
671 716 1.876849 ATGCTGGGATGTGACTCTCT 58.123 50.000 0.00 0.00 0.00 3.10
672 717 2.093288 TCAATGCTGGGATGTGACTCTC 60.093 50.000 0.00 0.00 0.00 3.20
763 808 1.066215 CACAGACCATGAACATCCGGA 60.066 52.381 6.61 6.61 0.00 5.14
765 810 1.066215 TCCACAGACCATGAACATCCG 60.066 52.381 0.00 0.00 0.00 4.18
767 812 3.616956 TCTCCACAGACCATGAACATC 57.383 47.619 0.00 0.00 0.00 3.06
787 832 5.108187 TGAGCTTTTTCTCCAGCAGATAT 57.892 39.130 0.00 0.00 38.61 1.63
788 833 4.558226 TGAGCTTTTTCTCCAGCAGATA 57.442 40.909 0.00 0.00 38.61 1.98
791 836 3.376546 GGTATGAGCTTTTTCTCCAGCAG 59.623 47.826 0.00 0.00 38.61 4.24
799 844 3.696051 TGCAGGATGGTATGAGCTTTTTC 59.304 43.478 0.00 0.00 35.86 2.29
806 851 0.390492 TCGCTGCAGGATGGTATGAG 59.610 55.000 17.12 0.00 35.86 2.90
817 862 1.442769 ACTTGGTGTAATCGCTGCAG 58.557 50.000 10.11 10.11 0.00 4.41
822 867 3.871594 AGCAGAATACTTGGTGTAATCGC 59.128 43.478 0.00 0.00 36.45 4.58
831 876 4.202441 AGCATGGTAAGCAGAATACTTGG 58.798 43.478 0.00 0.00 0.00 3.61
849 894 0.537188 ACGAATCAACGGGAGAGCAT 59.463 50.000 0.00 0.00 37.61 3.79
855 900 1.563111 GCGATAACGAATCAACGGGA 58.437 50.000 0.00 0.00 42.66 5.14
859 904 4.031426 AGTTTCTCGCGATAACGAATCAAC 59.969 41.667 21.22 12.28 42.39 3.18
867 912 3.499048 TCTGTGAGTTTCTCGCGATAAC 58.501 45.455 20.39 20.39 43.13 1.89
871 916 0.241213 CCTCTGTGAGTTTCTCGCGA 59.759 55.000 9.26 9.26 43.13 5.87
872 917 0.039074 ACCTCTGTGAGTTTCTCGCG 60.039 55.000 0.00 0.00 43.13 5.87
873 918 3.182967 CATACCTCTGTGAGTTTCTCGC 58.817 50.000 3.72 3.72 40.91 5.03
897 942 9.522804 GGACATAACATAAGAATATCTCGGATC 57.477 37.037 0.00 0.00 0.00 3.36
900 945 7.976734 GGAGGACATAACATAAGAATATCTCGG 59.023 40.741 0.00 0.00 0.00 4.63
901 946 8.744652 AGGAGGACATAACATAAGAATATCTCG 58.255 37.037 0.00 0.00 0.00 4.04
907 952 9.838339 CACTAAAGGAGGACATAACATAAGAAT 57.162 33.333 0.00 0.00 0.00 2.40
909 954 8.375493 ACACTAAAGGAGGACATAACATAAGA 57.625 34.615 0.00 0.00 0.00 2.10
921 966 7.011382 AGAGAAAGAGTTACACTAAAGGAGGA 58.989 38.462 0.00 0.00 0.00 3.71
930 975 5.005628 AGAGGGAGAGAAAGAGTTACACT 57.994 43.478 0.00 0.00 0.00 3.55
931 976 5.731957 AAGAGGGAGAGAAAGAGTTACAC 57.268 43.478 0.00 0.00 0.00 2.90
932 977 7.011382 AGTTAAGAGGGAGAGAAAGAGTTACA 58.989 38.462 0.00 0.00 0.00 2.41
934 979 7.011382 ACAGTTAAGAGGGAGAGAAAGAGTTA 58.989 38.462 0.00 0.00 0.00 2.24
935 980 5.841783 ACAGTTAAGAGGGAGAGAAAGAGTT 59.158 40.000 0.00 0.00 0.00 3.01
965 1013 5.240121 AGCATAAACTGGGAAAATTGCAAG 58.760 37.500 4.94 0.00 0.00 4.01
1229 1277 3.128589 CCATACAACCGTTCCATTTGGAG 59.871 47.826 0.00 0.00 46.36 3.86
1276 1324 7.886629 ACTTAAGTACACCGGACTTATCATA 57.113 36.000 9.46 0.00 38.76 2.15
1557 1605 5.303333 TCCAAAACCAAAAGTGTAATCTCCC 59.697 40.000 0.00 0.00 0.00 4.30
1822 1870 2.823154 TCCACAATTTGGTTTCCGGATC 59.177 45.455 4.15 1.12 46.97 3.36
1989 2037 0.690762 GTCTGGTGCACCCTTTCCTA 59.309 55.000 32.62 11.58 34.29 2.94
2096 2144 6.258507 ACAGGCAAATTCACATTCACTTTTTC 59.741 34.615 0.00 0.00 0.00 2.29
2168 2216 0.176219 GCCATGCCATAAGCTGCAAA 59.824 50.000 1.02 0.00 44.23 3.68
2287 2335 7.630242 TTCTTGCAATTAACCCTATCTTCAG 57.370 36.000 0.00 0.00 0.00 3.02
2494 2544 9.376075 AGACATGTCATGTTCTTTAACTATGAG 57.624 33.333 27.02 0.00 45.03 2.90
2617 2667 0.534412 CTGTGTCTTCGCTCTCCCAT 59.466 55.000 0.00 0.00 0.00 4.00
2991 3042 4.771590 ATTTGCCACACATGACTAACAG 57.228 40.909 0.00 0.00 0.00 3.16
3023 3074 6.690194 ATTTGCCTAACTGCTTGATCTAAG 57.310 37.500 0.00 0.00 39.49 2.18
3100 3151 3.844090 GAGGAGGGAGAGCGTGCC 61.844 72.222 0.00 0.00 36.73 5.01
3737 3801 4.643387 ACAGGAGCAACCACCGCC 62.643 66.667 2.96 0.00 42.04 6.13
3738 3802 3.050275 GACAGGAGCAACCACCGC 61.050 66.667 2.96 0.00 42.04 5.68
3739 3803 2.738521 CGACAGGAGCAACCACCG 60.739 66.667 2.96 0.04 42.04 4.94
3740 3804 2.358737 CCGACAGGAGCAACCACC 60.359 66.667 2.96 0.00 42.04 4.61
3741 3805 3.050275 GCCGACAGGAGCAACCAC 61.050 66.667 2.96 0.00 42.04 4.16
3742 3806 4.680237 CGCCGACAGGAGCAACCA 62.680 66.667 2.96 0.00 42.04 3.67
3815 3882 2.362369 CCATCAGTCCCTCCACGCT 61.362 63.158 0.00 0.00 0.00 5.07
3826 3893 4.148825 GCCGCCGAGACCATCAGT 62.149 66.667 0.00 0.00 0.00 3.41
3963 4030 0.613292 ATGTCTCCCTGACTCGCAGT 60.613 55.000 0.00 0.00 45.54 4.40
3973 4040 1.556911 CACTGGCAACTATGTCTCCCT 59.443 52.381 0.00 0.00 37.61 4.20
3990 4057 0.673644 CCATCGGCTCGGTTTTCACT 60.674 55.000 0.00 0.00 0.00 3.41
4183 4251 2.507992 CGCCTGCCTCTGTCTTCG 60.508 66.667 0.00 0.00 0.00 3.79
4338 4406 3.969250 ATGCCGCCAAGTACCACCG 62.969 63.158 0.00 0.00 0.00 4.94
4504 4574 2.062971 AGAAGGCGCCATCATCATTT 57.937 45.000 31.30 13.68 0.00 2.32
4505 4575 2.062971 AAGAAGGCGCCATCATCATT 57.937 45.000 31.30 15.38 0.00 2.57
4951 5027 6.989155 TTCTTAAACTCTGGTAGTCCTTGA 57.011 37.500 0.00 0.00 37.50 3.02
5254 5331 5.006746 GTGGAGATAAATAAGACCTTGTGCG 59.993 44.000 0.00 0.00 0.00 5.34
5293 5370 5.779241 TCAGGTCCCTGTGAATAATTCTT 57.221 39.130 12.88 0.00 43.96 2.52
5365 5442 7.769970 GGATCAAATATTCTTGCCATTCCAAAA 59.230 33.333 0.00 0.00 0.00 2.44
5550 5629 4.264253 TGACAGAGAAAATACCTGCCATG 58.736 43.478 0.00 0.00 0.00 3.66
5614 5693 1.745653 GGCATTTCTTAGCCCACTGAC 59.254 52.381 0.00 0.00 45.18 3.51
5622 5701 0.028637 GAGCTGCGGCATTTCTTAGC 59.971 55.000 21.93 0.95 41.70 3.09
5642 5721 4.569865 GGTTTAGGGAGTTTCCATGTCCAT 60.570 45.833 2.09 0.00 38.64 3.41
5691 5770 8.869897 CAATTATAGAACAGTTCGAGCTTGTTA 58.130 33.333 13.82 4.33 34.02 2.41
5701 5780 9.431887 TCAGGTACAACAATTATAGAACAGTTC 57.568 33.333 5.00 5.00 0.00 3.01
5732 5811 9.230122 TCAGTTGCAGACATCAAATTAGAATAA 57.770 29.630 0.00 0.00 0.00 1.40
5762 5843 2.829003 CAGCTCCCATGCCTGCAG 60.829 66.667 6.78 6.78 0.00 4.41
5937 6018 1.737735 GGCAAGGTGGCATTTTCGC 60.738 57.895 0.00 0.00 43.14 4.70
6061 6142 9.233649 CTCCTTACTAATGGATAGTACTACCTG 57.766 40.741 4.31 4.52 44.80 4.00
6073 6154 7.015877 ACAACTGTAACACTCCTTACTAATGGA 59.984 37.037 0.00 0.00 0.00 3.41
6074 6155 7.159372 ACAACTGTAACACTCCTTACTAATGG 58.841 38.462 0.00 0.00 0.00 3.16
6075 6156 8.603242 AACAACTGTAACACTCCTTACTAATG 57.397 34.615 0.00 0.00 0.00 1.90
6076 6157 9.269453 GAAACAACTGTAACACTCCTTACTAAT 57.731 33.333 0.00 0.00 0.00 1.73
6077 6158 8.480501 AGAAACAACTGTAACACTCCTTACTAA 58.519 33.333 0.00 0.00 0.00 2.24
6078 6159 7.924412 CAGAAACAACTGTAACACTCCTTACTA 59.076 37.037 0.00 0.00 33.73 1.82
6084 6176 6.619801 ATTCAGAAACAACTGTAACACTCC 57.380 37.500 0.00 0.00 38.79 3.85
6121 6213 7.803487 ATGATGGGATAACATGATACTCTCA 57.197 36.000 0.00 0.00 38.53 3.27
6139 6231 4.816385 AGTGCTGTCCGTTTAATATGATGG 59.184 41.667 0.00 0.00 0.00 3.51
6143 6235 6.176975 TCAAAGTGCTGTCCGTTTAATATG 57.823 37.500 0.00 0.00 0.00 1.78
6151 6243 3.780624 ACTTCAAAGTGCTGTCCGT 57.219 47.368 0.00 0.00 37.98 4.69
6160 6252 4.664688 ATTCCTGGGATCACTTCAAAGT 57.335 40.909 0.00 0.00 40.60 2.66
6161 6253 5.713861 AGAAATTCCTGGGATCACTTCAAAG 59.286 40.000 0.00 0.00 0.00 2.77
6182 7658 3.942130 TTGAGATCGAGCACTTCAGAA 57.058 42.857 2.38 0.00 0.00 3.02
6183 7659 3.507622 TCTTTGAGATCGAGCACTTCAGA 59.492 43.478 2.38 0.00 0.00 3.27
6184 7660 3.842820 TCTTTGAGATCGAGCACTTCAG 58.157 45.455 2.38 0.00 0.00 3.02
6185 7661 3.942130 TCTTTGAGATCGAGCACTTCA 57.058 42.857 2.38 0.00 0.00 3.02
6186 7662 8.581057 TTAATATCTTTGAGATCGAGCACTTC 57.419 34.615 2.38 0.00 36.20 3.01
6187 7663 9.553064 AATTAATATCTTTGAGATCGAGCACTT 57.447 29.630 2.38 0.00 36.20 3.16
6188 7664 8.986847 CAATTAATATCTTTGAGATCGAGCACT 58.013 33.333 2.38 0.00 36.20 4.40
6189 7665 8.768955 ACAATTAATATCTTTGAGATCGAGCAC 58.231 33.333 2.38 0.00 36.20 4.40
6190 7666 8.893219 ACAATTAATATCTTTGAGATCGAGCA 57.107 30.769 2.38 0.00 36.20 4.26
6191 7667 8.982685 TGACAATTAATATCTTTGAGATCGAGC 58.017 33.333 0.00 0.00 36.20 5.03
6231 7707 1.101635 GCTCCCCCTGAAAATACCGC 61.102 60.000 0.00 0.00 0.00 5.68
6247 7723 7.320443 TGTCAAAATATACCAATGACAGCTC 57.680 36.000 3.01 0.00 43.79 4.09
6284 7760 7.113544 GCAGATTACAGAGCAGTTTTGTTAAAC 59.886 37.037 0.00 0.00 43.19 2.01
6285 7761 7.138736 GCAGATTACAGAGCAGTTTTGTTAAA 58.861 34.615 0.00 0.00 0.00 1.52
6286 7762 6.262049 TGCAGATTACAGAGCAGTTTTGTTAA 59.738 34.615 0.00 0.00 32.48 2.01
6287 7763 5.762711 TGCAGATTACAGAGCAGTTTTGTTA 59.237 36.000 0.00 0.00 32.48 2.41
6288 7764 4.580167 TGCAGATTACAGAGCAGTTTTGTT 59.420 37.500 0.00 0.00 32.48 2.83
6289 7765 4.023707 GTGCAGATTACAGAGCAGTTTTGT 60.024 41.667 0.00 0.00 37.72 2.83
6290 7766 4.470462 GTGCAGATTACAGAGCAGTTTTG 58.530 43.478 0.00 0.00 37.72 2.44
6302 8072 2.488153 GTGGTTTCTGGGTGCAGATTAC 59.512 50.000 0.00 0.00 0.00 1.89
6306 8076 1.150536 GGTGGTTTCTGGGTGCAGA 59.849 57.895 0.00 0.00 0.00 4.26
6316 8086 2.546789 CCAGTAACGTCAAGGTGGTTTC 59.453 50.000 0.00 0.00 0.00 2.78
6326 8096 6.238842 GCCAGATATTAGTACCAGTAACGTCA 60.239 42.308 0.00 0.00 0.00 4.35
6327 8097 6.016443 AGCCAGATATTAGTACCAGTAACGTC 60.016 42.308 0.00 0.00 0.00 4.34
6328 8098 5.832060 AGCCAGATATTAGTACCAGTAACGT 59.168 40.000 0.00 0.00 0.00 3.99
6330 8100 7.014422 ACTCAGCCAGATATTAGTACCAGTAAC 59.986 40.741 0.00 0.00 0.00 2.50
6333 8103 5.459505 ACTCAGCCAGATATTAGTACCAGT 58.540 41.667 0.00 0.00 0.00 4.00
6343 8117 6.753913 TTATCCAAGAACTCAGCCAGATAT 57.246 37.500 0.00 0.00 0.00 1.63
6380 8154 9.187455 GTAATAAAGCGACAAAAAGAAATGGAA 57.813 29.630 0.00 0.00 0.00 3.53
6381 8155 8.353684 TGTAATAAAGCGACAAAAAGAAATGGA 58.646 29.630 0.00 0.00 0.00 3.41
6382 8156 8.514136 TGTAATAAAGCGACAAAAAGAAATGG 57.486 30.769 0.00 0.00 0.00 3.16
6383 8157 9.993881 CTTGTAATAAAGCGACAAAAAGAAATG 57.006 29.630 0.00 0.00 32.94 2.32
6384 8158 9.744468 ACTTGTAATAAAGCGACAAAAAGAAAT 57.256 25.926 0.00 0.00 32.94 2.17
6387 8161 9.820229 CATACTTGTAATAAAGCGACAAAAAGA 57.180 29.630 0.00 0.00 32.94 2.52
6388 8162 9.820229 TCATACTTGTAATAAAGCGACAAAAAG 57.180 29.630 0.00 0.00 32.94 2.27
6389 8163 9.601971 GTCATACTTGTAATAAAGCGACAAAAA 57.398 29.630 0.00 0.00 32.94 1.94
6390 8164 8.995220 AGTCATACTTGTAATAAAGCGACAAAA 58.005 29.630 0.00 0.00 32.94 2.44
6391 8165 8.440059 CAGTCATACTTGTAATAAAGCGACAAA 58.560 33.333 0.00 0.00 32.94 2.83
6392 8166 7.064134 CCAGTCATACTTGTAATAAAGCGACAA 59.936 37.037 0.00 0.00 31.50 3.18
6393 8167 6.533723 CCAGTCATACTTGTAATAAAGCGACA 59.466 38.462 0.00 0.00 31.50 4.35
6395 8169 6.869695 TCCAGTCATACTTGTAATAAAGCGA 58.130 36.000 0.00 0.00 0.00 4.93
6396 8170 6.201044 CCTCCAGTCATACTTGTAATAAAGCG 59.799 42.308 0.00 0.00 0.00 4.68
6398 8172 9.099454 GAACCTCCAGTCATACTTGTAATAAAG 57.901 37.037 0.00 0.00 0.00 1.85
6399 8173 7.762615 CGAACCTCCAGTCATACTTGTAATAAA 59.237 37.037 0.00 0.00 0.00 1.40
6400 8174 7.123098 TCGAACCTCCAGTCATACTTGTAATAA 59.877 37.037 0.00 0.00 0.00 1.40
6402 8176 5.421056 TCGAACCTCCAGTCATACTTGTAAT 59.579 40.000 0.00 0.00 0.00 1.89
6403 8177 4.768448 TCGAACCTCCAGTCATACTTGTAA 59.232 41.667 0.00 0.00 0.00 2.41
6404 8178 4.338012 TCGAACCTCCAGTCATACTTGTA 58.662 43.478 0.00 0.00 0.00 2.41
6405 8179 3.162666 TCGAACCTCCAGTCATACTTGT 58.837 45.455 0.00 0.00 0.00 3.16
6406 8180 3.868757 TCGAACCTCCAGTCATACTTG 57.131 47.619 0.00 0.00 0.00 3.16
6407 8181 3.769844 ACATCGAACCTCCAGTCATACTT 59.230 43.478 0.00 0.00 0.00 2.24
6409 8183 3.802948 ACATCGAACCTCCAGTCATAC 57.197 47.619 0.00 0.00 0.00 2.39
6411 8185 3.338249 CAAACATCGAACCTCCAGTCAT 58.662 45.455 0.00 0.00 0.00 3.06
6412 8186 2.549992 CCAAACATCGAACCTCCAGTCA 60.550 50.000 0.00 0.00 0.00 3.41
6414 8188 1.697432 TCCAAACATCGAACCTCCAGT 59.303 47.619 0.00 0.00 0.00 4.00
6415 8189 2.076863 GTCCAAACATCGAACCTCCAG 58.923 52.381 0.00 0.00 0.00 3.86
6416 8190 1.271163 GGTCCAAACATCGAACCTCCA 60.271 52.381 0.00 0.00 0.00 3.86
6418 8192 1.076332 CGGTCCAAACATCGAACCTC 58.924 55.000 0.00 0.00 0.00 3.85
6419 8193 0.395312 ACGGTCCAAACATCGAACCT 59.605 50.000 0.00 0.00 0.00 3.50
6420 8194 0.794473 GACGGTCCAAACATCGAACC 59.206 55.000 0.00 0.00 0.00 3.62
6422 8196 1.202545 TGTGACGGTCCAAACATCGAA 60.203 47.619 5.55 0.00 0.00 3.71
6425 8199 2.218603 AGTTGTGACGGTCCAAACATC 58.781 47.619 19.13 10.95 0.00 3.06
6427 8201 1.066071 TGAGTTGTGACGGTCCAAACA 60.066 47.619 19.13 15.19 0.00 2.83
6428 8202 1.329599 GTGAGTTGTGACGGTCCAAAC 59.670 52.381 5.55 9.86 0.00 2.93
6429 8203 1.066071 TGTGAGTTGTGACGGTCCAAA 60.066 47.619 5.55 0.00 0.00 3.28
6430 8204 0.537653 TGTGAGTTGTGACGGTCCAA 59.462 50.000 5.55 6.80 0.00 3.53
6432 8206 0.600255 CCTGTGAGTTGTGACGGTCC 60.600 60.000 5.55 0.00 0.00 4.46
6433 8207 0.104304 ACCTGTGAGTTGTGACGGTC 59.896 55.000 0.00 0.00 0.00 4.79
6434 8208 1.068127 GTACCTGTGAGTTGTGACGGT 59.932 52.381 0.00 0.00 0.00 4.83
6435 8209 1.340248 AGTACCTGTGAGTTGTGACGG 59.660 52.381 0.00 0.00 0.00 4.79
6436 8210 2.034179 TGAGTACCTGTGAGTTGTGACG 59.966 50.000 0.00 0.00 0.00 4.35
6437 8211 3.728076 TGAGTACCTGTGAGTTGTGAC 57.272 47.619 0.00 0.00 0.00 3.67
6438 8212 3.704566 ACTTGAGTACCTGTGAGTTGTGA 59.295 43.478 0.00 0.00 0.00 3.58
6439 8213 4.060038 ACTTGAGTACCTGTGAGTTGTG 57.940 45.455 0.00 0.00 0.00 3.33
6440 8214 4.443034 GGAACTTGAGTACCTGTGAGTTGT 60.443 45.833 0.00 0.00 0.00 3.32
6442 8216 3.967987 AGGAACTTGAGTACCTGTGAGTT 59.032 43.478 0.00 0.00 27.25 3.01
6443 8217 3.322254 CAGGAACTTGAGTACCTGTGAGT 59.678 47.826 0.00 0.00 43.16 3.41
6444 8218 3.919216 CAGGAACTTGAGTACCTGTGAG 58.081 50.000 0.00 0.00 43.16 3.51
6449 8223 1.348036 GTGGCAGGAACTTGAGTACCT 59.652 52.381 0.00 0.00 34.60 3.08
6450 8224 1.348036 AGTGGCAGGAACTTGAGTACC 59.652 52.381 0.00 0.00 34.60 3.34
6451 8225 2.841442 AGTGGCAGGAACTTGAGTAC 57.159 50.000 0.00 0.00 34.60 2.73
6454 8228 2.551459 CAGAAAGTGGCAGGAACTTGAG 59.449 50.000 0.00 0.00 37.90 3.02
6455 8229 2.575532 CAGAAAGTGGCAGGAACTTGA 58.424 47.619 0.00 0.00 37.90 3.02
6456 8230 1.000938 GCAGAAAGTGGCAGGAACTTG 60.001 52.381 0.00 0.00 37.90 3.16
6457 8231 1.322442 GCAGAAAGTGGCAGGAACTT 58.678 50.000 0.00 0.00 39.55 2.66
6458 8232 0.183492 TGCAGAAAGTGGCAGGAACT 59.817 50.000 0.00 0.00 43.88 3.01
6459 8233 2.719376 TGCAGAAAGTGGCAGGAAC 58.281 52.632 0.00 0.00 34.58 3.62
6464 8238 0.183492 AGTTCCTGCAGAAAGTGGCA 59.817 50.000 17.39 0.00 35.85 4.92
6466 8240 3.409026 AGTAGTTCCTGCAGAAAGTGG 57.591 47.619 17.39 0.00 35.85 4.00
6467 8241 3.499918 CCAAGTAGTTCCTGCAGAAAGTG 59.500 47.826 17.39 0.00 35.85 3.16
6468 8242 3.496870 CCCAAGTAGTTCCTGCAGAAAGT 60.497 47.826 17.39 6.81 35.85 2.66
6470 8244 2.708861 TCCCAAGTAGTTCCTGCAGAAA 59.291 45.455 17.39 0.00 35.85 2.52
6471 8245 2.334977 TCCCAAGTAGTTCCTGCAGAA 58.665 47.619 17.39 4.81 0.00 3.02
6472 8246 2.024176 TCCCAAGTAGTTCCTGCAGA 57.976 50.000 17.39 0.00 0.00 4.26
6473 8247 2.859165 TTCCCAAGTAGTTCCTGCAG 57.141 50.000 6.78 6.78 0.00 4.41
6474 8248 3.806949 AATTCCCAAGTAGTTCCTGCA 57.193 42.857 0.00 0.00 0.00 4.41
6475 8249 4.082190 GGAAAATTCCCAAGTAGTTCCTGC 60.082 45.833 0.43 0.00 41.62 4.85
6476 8250 4.156008 CGGAAAATTCCCAAGTAGTTCCTG 59.844 45.833 6.61 0.00 44.67 3.86
6477 8251 4.202535 ACGGAAAATTCCCAAGTAGTTCCT 60.203 41.667 6.61 0.00 44.67 3.36
6478 8252 4.077108 ACGGAAAATTCCCAAGTAGTTCC 58.923 43.478 6.61 0.00 44.67 3.62
6479 8253 5.702209 TGTACGGAAAATTCCCAAGTAGTTC 59.298 40.000 6.61 0.00 44.67 3.01
6481 8255 4.999311 GTGTACGGAAAATTCCCAAGTAGT 59.001 41.667 6.61 0.82 44.67 2.73
6482 8256 4.092383 CGTGTACGGAAAATTCCCAAGTAG 59.908 45.833 6.61 0.00 44.67 2.57
6483 8257 3.995705 CGTGTACGGAAAATTCCCAAGTA 59.004 43.478 6.61 1.25 44.67 2.24
6485 8259 2.413634 GCGTGTACGGAAAATTCCCAAG 60.414 50.000 6.61 3.26 44.67 3.61
6486 8260 1.536331 GCGTGTACGGAAAATTCCCAA 59.464 47.619 6.61 0.00 44.67 4.12
6487 8261 1.158434 GCGTGTACGGAAAATTCCCA 58.842 50.000 6.61 0.00 44.67 4.37
6489 8263 1.465187 GCAGCGTGTACGGAAAATTCC 60.465 52.381 6.55 1.92 44.05 3.01
6490 8264 1.785518 CGCAGCGTGTACGGAAAATTC 60.786 52.381 6.65 0.00 40.23 2.17
6491 8265 0.165079 CGCAGCGTGTACGGAAAATT 59.835 50.000 6.65 0.00 40.23 1.82
6492 8266 0.947180 ACGCAGCGTGTACGGAAAAT 60.947 50.000 22.28 0.00 39.18 1.82
6545 8320 2.435805 GCAGGAGAACCATGTGATCCTA 59.564 50.000 5.88 0.00 38.34 2.94
6547 8322 1.065199 TGCAGGAGAACCATGTGATCC 60.065 52.381 0.00 0.00 38.94 3.36
6548 8323 2.408271 TGCAGGAGAACCATGTGATC 57.592 50.000 0.00 0.00 38.94 2.92
6550 8325 1.340308 CCATGCAGGAGAACCATGTGA 60.340 52.381 0.00 0.00 41.22 3.58
6551 8326 1.100510 CCATGCAGGAGAACCATGTG 58.899 55.000 0.00 0.00 41.22 3.21
6553 8328 2.715749 TACCATGCAGGAGAACCATG 57.284 50.000 0.00 0.00 41.22 3.66
6555 8330 2.195727 TCATACCATGCAGGAGAACCA 58.804 47.619 0.00 0.00 41.22 3.67
6556 8331 3.281727 TTCATACCATGCAGGAGAACC 57.718 47.619 0.00 0.00 41.22 3.62
6580 8979 5.760253 AGATCTTGTATCCGCGATCAATTTT 59.240 36.000 8.23 0.00 35.81 1.82
6584 8983 4.760204 TCTAGATCTTGTATCCGCGATCAA 59.240 41.667 8.23 6.37 35.81 2.57
6586 8985 4.393680 ACTCTAGATCTTGTATCCGCGATC 59.606 45.833 8.23 0.00 34.05 3.69
6591 8990 5.760743 TCAGTCACTCTAGATCTTGTATCCG 59.239 44.000 0.00 0.00 0.00 4.18
6598 8997 6.545666 CCAGTGTATCAGTCACTCTAGATCTT 59.454 42.308 0.00 0.00 43.14 2.40
6610 9009 6.269315 CAGTTCAGTATCCAGTGTATCAGTC 58.731 44.000 0.00 0.00 0.00 3.51
6621 9020 2.028112 GGTCAGTGCAGTTCAGTATCCA 60.028 50.000 0.00 0.00 0.00 3.41
6625 9024 0.317160 CCGGTCAGTGCAGTTCAGTA 59.683 55.000 0.00 0.00 0.00 2.74
6644 9043 5.065346 TGTTGTCTATCAGTCTCGATCTGTC 59.935 44.000 14.45 5.73 34.86 3.51
6707 9181 5.765182 AGTGGAGAAACAAGAACGAATTGAT 59.235 36.000 0.00 0.00 0.00 2.57
6710 9184 6.934645 TGATAGTGGAGAAACAAGAACGAATT 59.065 34.615 0.00 0.00 0.00 2.17
6732 9206 0.673644 GTTGGTGGTAGCGCAGTGAT 60.674 55.000 11.47 0.00 0.00 3.06
6771 9245 0.532862 ACCCTCACGTTGCTCACTTG 60.533 55.000 0.00 0.00 0.00 3.16
6788 9274 4.089408 TGACCGGGCCTAATATTTTACC 57.911 45.455 3.83 0.00 0.00 2.85
6816 9302 2.304751 AATATTCTTCGACCGCCGTT 57.695 45.000 0.00 0.00 39.75 4.44
6843 9329 4.517285 TGTGATTCCTATGGAACTGCTTC 58.483 43.478 0.71 0.00 45.07 3.86
6974 9461 3.632080 TGACGCCATGGTTCCGGT 61.632 61.111 14.67 3.97 0.00 5.28
6986 9473 1.103803 TAGGATGGAGAGTGTGACGC 58.896 55.000 0.00 0.00 0.00 5.19
7011 9498 1.332178 GACGAGCTCGACACTTGAAG 58.668 55.000 40.58 9.75 43.02 3.02
7015 9502 0.870393 TAACGACGAGCTCGACACTT 59.130 50.000 40.58 27.21 46.14 3.16
7028 9515 3.302028 CGCCCTTTTTATAGCGTAACGAC 60.302 47.826 0.00 0.00 43.45 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.