Multiple sequence alignment - TraesCS3A01G313100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G313100 chr3A 100.000 2984 0 0 1 2984 552642681 552639698 0.000000e+00 5511.0
1 TraesCS3A01G313100 chr3A 91.304 115 10 0 724 838 117944539 117944653 1.110000e-34 158.0
2 TraesCS3A01G313100 chr3D 87.527 1852 129 48 913 2736 103621061 103622838 0.000000e+00 2047.0
3 TraesCS3A01G313100 chr3D 87.172 686 56 14 42 709 103620249 103620920 0.000000e+00 750.0
4 TraesCS3A01G313100 chr3D 81.197 117 21 1 2794 2909 103622941 103623057 3.170000e-15 93.5
5 TraesCS3A01G313100 chr3B 88.378 1566 103 32 855 2403 154195641 154197144 0.000000e+00 1810.0
6 TraesCS3A01G313100 chr3B 89.574 470 32 5 116 572 154194934 154195399 5.540000e-162 580.0
7 TraesCS3A01G313100 chr2D 85.375 253 25 8 1413 1659 527272546 527272300 4.940000e-63 252.0
8 TraesCS3A01G313100 chr2A 84.524 252 29 7 1413 1659 672265664 672265418 1.070000e-59 241.0
9 TraesCS3A01G313100 chr2A 94.000 50 1 2 796 843 609215849 609215800 1.150000e-09 75.0
10 TraesCS3A01G313100 chr2A 93.478 46 3 0 793 838 609215847 609215892 5.340000e-08 69.4
11 TraesCS3A01G313100 chr2B 82.869 251 33 9 1415 1660 623869950 623869705 1.800000e-52 217.0
12 TraesCS3A01G313100 chr2B 92.373 118 8 1 727 843 42279866 42279749 1.840000e-37 167.0
13 TraesCS3A01G313100 chr2B 91.964 112 9 0 727 838 580891875 580891986 1.110000e-34 158.0
14 TraesCS3A01G313100 chr6D 91.304 115 5 1 729 838 457677713 457677827 5.150000e-33 152.0
15 TraesCS3A01G313100 chr1D 89.831 118 9 1 724 841 417624874 417624760 6.660000e-32 148.0
16 TraesCS3A01G313100 chr5A 88.793 116 12 1 724 838 215147004 215146889 1.120000e-29 141.0
17 TraesCS3A01G313100 chr5D 95.349 86 1 2 714 797 281210936 281210852 1.870000e-27 134.0
18 TraesCS3A01G313100 chr5B 94.253 87 3 1 718 802 681345103 681345017 6.710000e-27 132.0
19 TraesCS3A01G313100 chr4A 80.571 175 25 9 1414 1582 703941884 703941713 3.120000e-25 126.0
20 TraesCS3A01G313100 chr4A 81.690 142 17 8 1414 1549 704153888 704153750 3.140000e-20 110.0
21 TraesCS3A01G313100 chr4A 75.581 258 39 23 1414 1654 703932264 703932514 4.070000e-19 106.0
22 TraesCS3A01G313100 chr4A 90.741 54 5 0 793 846 701286349 701286402 4.130000e-09 73.1
23 TraesCS3A01G313100 chr4B 92.135 89 6 1 714 802 314423945 314423858 1.120000e-24 124.0
24 TraesCS3A01G313100 chr7D 75.486 257 41 20 1414 1654 27453271 27453521 4.070000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G313100 chr3A 552639698 552642681 2983 True 5511.0 5511 100.000000 1 2984 1 chr3A.!!$R1 2983
1 TraesCS3A01G313100 chr3D 103620249 103623057 2808 False 963.5 2047 85.298667 42 2909 3 chr3D.!!$F1 2867
2 TraesCS3A01G313100 chr3B 154194934 154197144 2210 False 1195.0 1810 88.976000 116 2403 2 chr3B.!!$F1 2287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 385 0.032515 TAAGACTCATCCCCAGCCGA 60.033 55.0 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2338 0.036671 CAAGTAGTCCCAACCGACCC 60.037 60.0 0.0 0.0 32.91 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 8.996651 TGTAATCTTCCTTTCTTTTTCTTCCT 57.003 30.769 0.00 0.00 0.00 3.36
39 40 9.421399 TGTAATCTTCCTTTCTTTTTCTTCCTT 57.579 29.630 0.00 0.00 0.00 3.36
122 125 3.131396 ACGTTTGTGACATCAACTCCTC 58.869 45.455 0.00 0.00 0.00 3.71
132 135 7.602644 TGTGACATCAACTCCTCTATTTAACAC 59.397 37.037 0.00 0.00 0.00 3.32
350 365 2.543067 AAATCTCCCCCGCAGACAGC 62.543 60.000 0.00 0.00 40.87 4.40
365 380 2.111384 GACAGCTAAGACTCATCCCCA 58.889 52.381 0.00 0.00 0.00 4.96
370 385 0.032515 TAAGACTCATCCCCAGCCGA 60.033 55.000 0.00 0.00 0.00 5.54
390 405 2.540265 ACTGAGAGCAAACCAGACAG 57.460 50.000 0.00 0.00 0.00 3.51
418 433 6.201997 CCAAACAGTAAAATAAACCAGCCAAC 59.798 38.462 0.00 0.00 0.00 3.77
557 573 3.046285 CGTCACAAACGTGAAACATGT 57.954 42.857 0.00 0.00 44.79 3.21
568 584 6.811253 ACGTGAAACATGTGGTACAAATAT 57.189 33.333 0.00 0.00 31.16 1.28
572 588 9.433317 CGTGAAACATGTGGTACAAATATAATC 57.567 33.333 0.00 0.00 31.16 1.75
619 741 6.903340 ATTACAGTGGGGTTTTATCCTACT 57.097 37.500 0.00 0.00 45.20 2.57
620 742 8.396619 AATTACAGTGGGGTTTTATCCTACTA 57.603 34.615 0.00 0.00 42.96 1.82
629 751 6.183361 GGGGTTTTATCCTACTATTGCCCTTA 60.183 42.308 0.00 0.00 33.26 2.69
630 752 6.940867 GGGTTTTATCCTACTATTGCCCTTAG 59.059 42.308 0.00 0.00 0.00 2.18
687 812 8.048534 AGTTCTACTGTGCTATAGACGTTTTA 57.951 34.615 3.21 0.00 0.00 1.52
688 813 8.684520 AGTTCTACTGTGCTATAGACGTTTTAT 58.315 33.333 3.21 0.00 0.00 1.40
689 814 9.298774 GTTCTACTGTGCTATAGACGTTTTATT 57.701 33.333 3.21 0.00 0.00 1.40
733 858 9.802210 ATGGAGTATACTATAGTACTACTCCCT 57.198 37.037 36.58 32.04 45.79 4.20
734 859 9.265862 TGGAGTATACTATAGTACTACTCCCTC 57.734 40.741 36.58 27.12 45.79 4.30
735 860 8.704668 GGAGTATACTATAGTACTACTCCCTCC 58.295 44.444 34.28 25.79 43.96 4.30
736 861 8.305046 AGTATACTATAGTACTACTCCCTCCG 57.695 42.308 14.82 0.00 32.72 4.63
737 862 7.898636 AGTATACTATAGTACTACTCCCTCCGT 59.101 40.741 14.82 0.00 32.72 4.69
738 863 5.903198 ACTATAGTACTACTCCCTCCGTT 57.097 43.478 4.31 0.00 0.00 4.44
739 864 6.259346 ACTATAGTACTACTCCCTCCGTTT 57.741 41.667 4.31 0.00 0.00 3.60
740 865 6.295249 ACTATAGTACTACTCCCTCCGTTTC 58.705 44.000 4.31 0.00 0.00 2.78
741 866 3.446442 AGTACTACTCCCTCCGTTTCA 57.554 47.619 0.00 0.00 0.00 2.69
742 867 3.771216 AGTACTACTCCCTCCGTTTCAA 58.229 45.455 0.00 0.00 0.00 2.69
743 868 4.154942 AGTACTACTCCCTCCGTTTCAAA 58.845 43.478 0.00 0.00 0.00 2.69
744 869 4.776308 AGTACTACTCCCTCCGTTTCAAAT 59.224 41.667 0.00 0.00 0.00 2.32
745 870 4.635699 ACTACTCCCTCCGTTTCAAATT 57.364 40.909 0.00 0.00 0.00 1.82
746 871 5.750352 ACTACTCCCTCCGTTTCAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
747 872 5.485620 ACTACTCCCTCCGTTTCAAATTAC 58.514 41.667 0.00 0.00 0.00 1.89
748 873 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
749 874 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
750 875 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
751 876 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
752 877 3.370061 CCCTCCGTTTCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
753 878 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
754 879 3.641648 TCCGTTTCAAATTACTCGTCGT 58.358 40.909 0.00 0.00 0.00 4.34
755 880 3.426191 TCCGTTTCAAATTACTCGTCGTG 59.574 43.478 0.00 0.00 0.00 4.35
756 881 3.422603 CCGTTTCAAATTACTCGTCGTGG 60.423 47.826 0.00 0.00 0.00 4.94
757 882 3.182972 CGTTTCAAATTACTCGTCGTGGT 59.817 43.478 0.00 0.00 0.00 4.16
758 883 4.318263 CGTTTCAAATTACTCGTCGTGGTT 60.318 41.667 0.00 0.00 0.00 3.67
759 884 5.504392 GTTTCAAATTACTCGTCGTGGTTT 58.496 37.500 0.00 0.00 0.00 3.27
760 885 5.738118 TTCAAATTACTCGTCGTGGTTTT 57.262 34.783 0.00 0.00 0.00 2.43
761 886 6.841443 TTCAAATTACTCGTCGTGGTTTTA 57.159 33.333 0.00 0.00 0.00 1.52
762 887 6.456447 TCAAATTACTCGTCGTGGTTTTAG 57.544 37.500 0.00 0.00 0.00 1.85
763 888 5.984926 TCAAATTACTCGTCGTGGTTTTAGT 59.015 36.000 0.00 0.00 0.00 2.24
764 889 6.479660 TCAAATTACTCGTCGTGGTTTTAGTT 59.520 34.615 0.00 0.00 0.00 2.24
765 890 6.849588 AATTACTCGTCGTGGTTTTAGTTT 57.150 33.333 0.00 0.00 0.00 2.66
766 891 7.945033 AATTACTCGTCGTGGTTTTAGTTTA 57.055 32.000 0.00 0.00 0.00 2.01
767 892 7.945033 ATTACTCGTCGTGGTTTTAGTTTAA 57.055 32.000 0.00 0.00 0.00 1.52
768 893 7.763172 TTACTCGTCGTGGTTTTAGTTTAAA 57.237 32.000 0.00 0.00 0.00 1.52
769 894 6.849588 ACTCGTCGTGGTTTTAGTTTAAAT 57.150 33.333 0.00 0.00 0.00 1.40
770 895 7.250445 ACTCGTCGTGGTTTTAGTTTAAATT 57.750 32.000 0.00 0.00 0.00 1.82
771 896 7.696755 ACTCGTCGTGGTTTTAGTTTAAATTT 58.303 30.769 0.00 0.00 0.00 1.82
772 897 8.825745 ACTCGTCGTGGTTTTAGTTTAAATTTA 58.174 29.630 0.00 0.00 0.00 1.40
773 898 9.649024 CTCGTCGTGGTTTTAGTTTAAATTTAA 57.351 29.630 6.54 6.54 0.00 1.52
774 899 9.994432 TCGTCGTGGTTTTAGTTTAAATTTAAA 57.006 25.926 17.45 17.45 0.00 1.52
789 914 9.994432 TTTAAATTTAAACTAAAACCACGACGA 57.006 25.926 17.45 0.00 0.00 4.20
790 915 9.649024 TTAAATTTAAACTAAAACCACGACGAG 57.351 29.630 8.20 0.00 0.00 4.18
791 916 6.849588 ATTTAAACTAAAACCACGACGAGT 57.150 33.333 0.00 0.00 0.00 4.18
792 917 7.945033 ATTTAAACTAAAACCACGACGAGTA 57.055 32.000 0.00 0.00 0.00 2.59
793 918 7.763172 TTTAAACTAAAACCACGACGAGTAA 57.237 32.000 0.00 0.00 0.00 2.24
794 919 7.945033 TTAAACTAAAACCACGACGAGTAAT 57.055 32.000 0.00 0.00 0.00 1.89
795 920 6.849588 AAACTAAAACCACGACGAGTAATT 57.150 33.333 0.00 1.08 0.00 1.40
796 921 6.849588 AACTAAAACCACGACGAGTAATTT 57.150 33.333 0.00 0.34 0.00 1.82
797 922 6.849588 ACTAAAACCACGACGAGTAATTTT 57.150 33.333 0.00 3.46 34.99 1.82
798 923 6.652245 ACTAAAACCACGACGAGTAATTTTG 58.348 36.000 0.00 1.74 33.65 2.44
799 924 5.738118 AAAACCACGACGAGTAATTTTGA 57.262 34.783 0.00 0.00 31.68 2.69
800 925 5.738118 AAACCACGACGAGTAATTTTGAA 57.262 34.783 0.00 0.00 0.00 2.69
801 926 4.720530 ACCACGACGAGTAATTTTGAAC 57.279 40.909 0.00 0.00 0.00 3.18
802 927 4.374399 ACCACGACGAGTAATTTTGAACT 58.626 39.130 0.00 0.00 0.00 3.01
803 928 5.531634 ACCACGACGAGTAATTTTGAACTA 58.468 37.500 0.00 0.00 0.00 2.24
804 929 5.984926 ACCACGACGAGTAATTTTGAACTAA 59.015 36.000 0.00 0.00 0.00 2.24
805 930 6.479660 ACCACGACGAGTAATTTTGAACTAAA 59.520 34.615 0.00 0.00 0.00 1.85
806 931 7.011295 ACCACGACGAGTAATTTTGAACTAAAA 59.989 33.333 0.00 0.00 42.10 1.52
807 932 7.319615 CCACGACGAGTAATTTTGAACTAAAAC 59.680 37.037 0.00 0.00 40.80 2.43
808 933 7.319615 CACGACGAGTAATTTTGAACTAAAACC 59.680 37.037 0.00 0.00 40.80 3.27
809 934 7.011295 ACGACGAGTAATTTTGAACTAAAACCA 59.989 33.333 0.00 0.00 40.80 3.67
810 935 7.319615 CGACGAGTAATTTTGAACTAAAACCAC 59.680 37.037 0.00 0.00 40.80 4.16
811 936 7.127686 ACGAGTAATTTTGAACTAAAACCACG 58.872 34.615 0.00 0.00 40.80 4.94
812 937 7.011295 ACGAGTAATTTTGAACTAAAACCACGA 59.989 33.333 0.00 0.00 40.80 4.35
813 938 8.013378 CGAGTAATTTTGAACTAAAACCACGAT 58.987 33.333 0.00 0.00 40.80 3.73
814 939 9.113876 GAGTAATTTTGAACTAAAACCACGATG 57.886 33.333 0.00 0.00 40.80 3.84
815 940 8.842280 AGTAATTTTGAACTAAAACCACGATGA 58.158 29.630 0.00 0.00 40.80 2.92
816 941 9.113876 GTAATTTTGAACTAAAACCACGATGAG 57.886 33.333 0.00 0.00 40.80 2.90
817 942 6.687081 TTTTGAACTAAAACCACGATGAGT 57.313 33.333 0.00 0.00 33.48 3.41
818 943 7.789273 TTTTGAACTAAAACCACGATGAGTA 57.211 32.000 0.00 0.00 33.48 2.59
819 944 7.789273 TTTGAACTAAAACCACGATGAGTAA 57.211 32.000 0.00 0.00 0.00 2.24
820 945 7.972832 TTGAACTAAAACCACGATGAGTAAT 57.027 32.000 0.00 0.00 0.00 1.89
821 946 7.972832 TGAACTAAAACCACGATGAGTAATT 57.027 32.000 0.00 0.00 0.00 1.40
822 947 8.385898 TGAACTAAAACCACGATGAGTAATTT 57.614 30.769 0.00 0.00 0.00 1.82
823 948 9.491675 TGAACTAAAACCACGATGAGTAATTTA 57.508 29.630 0.00 0.00 0.00 1.40
824 949 9.968743 GAACTAAAACCACGATGAGTAATTTAG 57.031 33.333 0.00 0.00 37.40 1.85
825 950 9.715121 AACTAAAACCACGATGAGTAATTTAGA 57.285 29.630 8.45 0.00 36.27 2.10
826 951 9.715121 ACTAAAACCACGATGAGTAATTTAGAA 57.285 29.630 8.45 0.00 36.27 2.10
829 954 7.553881 AACCACGATGAGTAATTTAGAATGG 57.446 36.000 0.00 0.00 0.00 3.16
830 955 6.884832 ACCACGATGAGTAATTTAGAATGGA 58.115 36.000 0.00 0.00 0.00 3.41
831 956 6.986817 ACCACGATGAGTAATTTAGAATGGAG 59.013 38.462 0.00 0.00 0.00 3.86
832 957 6.425114 CCACGATGAGTAATTTAGAATGGAGG 59.575 42.308 0.00 0.00 0.00 4.30
833 958 6.425114 CACGATGAGTAATTTAGAATGGAGGG 59.575 42.308 0.00 0.00 0.00 4.30
834 959 6.326583 ACGATGAGTAATTTAGAATGGAGGGA 59.673 38.462 0.00 0.00 0.00 4.20
835 960 6.870965 CGATGAGTAATTTAGAATGGAGGGAG 59.129 42.308 0.00 0.00 0.00 4.30
836 961 7.472100 CGATGAGTAATTTAGAATGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
837 962 8.798975 ATGAGTAATTTAGAATGGAGGGAGTA 57.201 34.615 0.00 0.00 0.00 2.59
838 963 8.251383 TGAGTAATTTAGAATGGAGGGAGTAG 57.749 38.462 0.00 0.00 0.00 2.57
839 964 7.844779 TGAGTAATTTAGAATGGAGGGAGTAGT 59.155 37.037 0.00 0.00 0.00 2.73
840 965 8.625467 AGTAATTTAGAATGGAGGGAGTAGTT 57.375 34.615 0.00 0.00 0.00 2.24
841 966 9.059023 AGTAATTTAGAATGGAGGGAGTAGTTT 57.941 33.333 0.00 0.00 0.00 2.66
842 967 9.682465 GTAATTTAGAATGGAGGGAGTAGTTTT 57.318 33.333 0.00 0.00 0.00 2.43
843 968 8.581253 AATTTAGAATGGAGGGAGTAGTTTTG 57.419 34.615 0.00 0.00 0.00 2.44
844 969 6.945636 TTAGAATGGAGGGAGTAGTTTTGA 57.054 37.500 0.00 0.00 0.00 2.69
845 970 5.843019 AGAATGGAGGGAGTAGTTTTGAA 57.157 39.130 0.00 0.00 0.00 2.69
846 971 5.810095 AGAATGGAGGGAGTAGTTTTGAAG 58.190 41.667 0.00 0.00 0.00 3.02
847 972 5.548056 AGAATGGAGGGAGTAGTTTTGAAGA 59.452 40.000 0.00 0.00 0.00 2.87
848 973 4.891992 TGGAGGGAGTAGTTTTGAAGAG 57.108 45.455 0.00 0.00 0.00 2.85
849 974 3.583086 TGGAGGGAGTAGTTTTGAAGAGG 59.417 47.826 0.00 0.00 0.00 3.69
850 975 3.601435 GAGGGAGTAGTTTTGAAGAGGC 58.399 50.000 0.00 0.00 0.00 4.70
851 976 2.028020 AGGGAGTAGTTTTGAAGAGGCG 60.028 50.000 0.00 0.00 0.00 5.52
852 977 2.289506 GGGAGTAGTTTTGAAGAGGCGT 60.290 50.000 0.00 0.00 0.00 5.68
853 978 2.737252 GGAGTAGTTTTGAAGAGGCGTG 59.263 50.000 0.00 0.00 0.00 5.34
867 992 2.427360 GCGTGCTGCATTGTGAAAG 58.573 52.632 5.27 0.00 45.45 2.62
868 993 0.318107 GCGTGCTGCATTGTGAAAGT 60.318 50.000 5.27 0.00 45.45 2.66
870 995 1.782569 CGTGCTGCATTGTGAAAGTTG 59.217 47.619 5.27 0.00 0.00 3.16
877 1002 2.352127 GCATTGTGAAAGTTGAGGGAGC 60.352 50.000 0.00 0.00 0.00 4.70
878 1004 3.152341 CATTGTGAAAGTTGAGGGAGCT 58.848 45.455 0.00 0.00 0.00 4.09
883 1009 4.591498 TGTGAAAGTTGAGGGAGCTAAGTA 59.409 41.667 0.00 0.00 0.00 2.24
889 1015 3.454371 TGAGGGAGCTAAGTAAATCGC 57.546 47.619 0.00 0.00 0.00 4.58
905 1031 4.437682 AATCGCTGGGAGGAATTGAATA 57.562 40.909 0.00 0.00 0.00 1.75
938 1145 2.509916 GAGAGGGAGGCATGCAGG 59.490 66.667 21.36 0.00 0.00 4.85
939 1146 3.771110 GAGAGGGAGGCATGCAGGC 62.771 68.421 21.36 16.47 44.61 4.85
964 1171 4.778143 GGCAATGCCGGTCCGTCT 62.778 66.667 9.14 0.00 39.62 4.18
967 1174 1.811266 CAATGCCGGTCCGTCTCTG 60.811 63.158 11.06 0.00 0.00 3.35
968 1175 1.982395 AATGCCGGTCCGTCTCTGA 60.982 57.895 11.06 0.00 0.00 3.27
1063 1273 0.534873 GTTGCCTCCACTCTCCTCTC 59.465 60.000 0.00 0.00 0.00 3.20
1064 1274 0.616111 TTGCCTCCACTCTCCTCTCC 60.616 60.000 0.00 0.00 0.00 3.71
1065 1275 1.309688 GCCTCCACTCTCCTCTCCT 59.690 63.158 0.00 0.00 0.00 3.69
1066 1276 0.755327 GCCTCCACTCTCCTCTCCTC 60.755 65.000 0.00 0.00 0.00 3.71
1067 1277 0.926293 CCTCCACTCTCCTCTCCTCT 59.074 60.000 0.00 0.00 0.00 3.69
1079 1289 4.580868 TCCTCTCCTCTACATATACAGCG 58.419 47.826 0.00 0.00 0.00 5.18
1085 1295 1.616865 TCTACATATACAGCGCCACCC 59.383 52.381 2.29 0.00 0.00 4.61
1099 1311 1.394151 CACCCTCCCTCTTCCCTCT 59.606 63.158 0.00 0.00 0.00 3.69
1102 1314 1.236708 CCCTCCCTCTTCCCTCTCTA 58.763 60.000 0.00 0.00 0.00 2.43
1103 1315 1.133294 CCCTCCCTCTTCCCTCTCTAC 60.133 61.905 0.00 0.00 0.00 2.59
1105 1317 2.178984 CCTCCCTCTTCCCTCTCTACAT 59.821 54.545 0.00 0.00 0.00 2.29
1107 1319 3.135279 TCCCTCTTCCCTCTCTACATCT 58.865 50.000 0.00 0.00 0.00 2.90
1109 1321 3.496331 CCTCTTCCCTCTCTACATCTCC 58.504 54.545 0.00 0.00 0.00 3.71
1115 1327 2.225017 CCCTCTCTACATCTCCCTCCTC 60.225 59.091 0.00 0.00 0.00 3.71
1121 1333 1.826054 CATCTCCCTCCTCGCTCGT 60.826 63.158 0.00 0.00 0.00 4.18
1137 1353 3.929417 CTCGTAGTAACTCGAGTCCTG 57.071 52.381 20.33 7.28 45.37 3.86
1268 1488 0.392193 GAGTCCTCGTCCACGTCCTA 60.392 60.000 0.00 0.00 40.80 2.94
1381 1601 2.520741 GCGAGGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
1698 1921 4.383861 CAGTGCTGCTCCGCCTCA 62.384 66.667 0.00 0.00 0.00 3.86
1699 1922 3.630013 AGTGCTGCTCCGCCTCAA 61.630 61.111 0.00 0.00 0.00 3.02
1700 1923 3.426568 GTGCTGCTCCGCCTCAAC 61.427 66.667 0.00 0.00 0.00 3.18
1701 1924 4.704833 TGCTGCTCCGCCTCAACC 62.705 66.667 0.00 0.00 0.00 3.77
1714 1937 1.073319 TCAACCTCAACCTCCCCCA 60.073 57.895 0.00 0.00 0.00 4.96
1823 2046 4.479993 CCAGCCGAGCCAGGGAAG 62.480 72.222 0.00 0.00 0.00 3.46
1958 2181 3.414193 TCTCGACCCCCTCGGCTA 61.414 66.667 0.00 0.00 43.16 3.93
1962 2185 2.686106 GACCCCCTCGGCTACCAA 60.686 66.667 0.00 0.00 33.26 3.67
1989 2212 5.562298 TCCTGTGGGAGTATTAATTAGGC 57.438 43.478 0.00 0.00 36.57 3.93
1990 2213 5.224441 TCCTGTGGGAGTATTAATTAGGCT 58.776 41.667 0.00 0.00 36.57 4.58
1991 2214 5.670361 TCCTGTGGGAGTATTAATTAGGCTT 59.330 40.000 0.00 0.00 36.57 4.35
1992 2215 5.765182 CCTGTGGGAGTATTAATTAGGCTTG 59.235 44.000 0.00 0.00 33.58 4.01
1993 2216 5.130350 TGTGGGAGTATTAATTAGGCTTGC 58.870 41.667 0.00 0.00 0.00 4.01
1995 2218 5.239525 GTGGGAGTATTAATTAGGCTTGCTG 59.760 44.000 0.00 0.00 0.00 4.41
1996 2219 5.104109 TGGGAGTATTAATTAGGCTTGCTGT 60.104 40.000 0.00 0.00 0.00 4.40
1999 2222 7.501225 GGGAGTATTAATTAGGCTTGCTGTAAA 59.499 37.037 0.00 0.00 0.00 2.01
2001 2224 9.717892 GAGTATTAATTAGGCTTGCTGTAAAAC 57.282 33.333 0.00 0.00 0.00 2.43
2002 2225 9.238368 AGTATTAATTAGGCTTGCTGTAAAACA 57.762 29.630 0.00 0.00 0.00 2.83
2003 2226 9.285770 GTATTAATTAGGCTTGCTGTAAAACAC 57.714 33.333 0.00 0.00 0.00 3.32
2004 2227 4.783764 ATTAGGCTTGCTGTAAAACACC 57.216 40.909 0.00 0.00 0.00 4.16
2005 2228 1.328279 AGGCTTGCTGTAAAACACCC 58.672 50.000 0.00 0.00 0.00 4.61
2006 2229 0.039527 GGCTTGCTGTAAAACACCCG 60.040 55.000 0.00 0.00 0.00 5.28
2007 2230 0.663269 GCTTGCTGTAAAACACCCGC 60.663 55.000 0.00 0.00 0.00 6.13
2008 2231 0.039527 CTTGCTGTAAAACACCCGCC 60.040 55.000 0.00 0.00 0.00 6.13
2021 2244 1.453928 CCCGCCCCTTGATTTCCTC 60.454 63.158 0.00 0.00 0.00 3.71
2022 2245 1.609783 CCGCCCCTTGATTTCCTCT 59.390 57.895 0.00 0.00 0.00 3.69
2023 2246 0.464554 CCGCCCCTTGATTTCCTCTC 60.465 60.000 0.00 0.00 0.00 3.20
2052 2276 3.855858 TCTTTTCTTGGTTTTGTGTGGC 58.144 40.909 0.00 0.00 0.00 5.01
2064 2288 3.762407 TTGTGTGGCTTTCTAGTGCTA 57.238 42.857 0.00 0.00 0.00 3.49
2092 2316 5.989551 AATGAAGCACATTTTTCGCTTTT 57.010 30.435 0.00 0.00 45.60 2.27
2107 2331 2.638673 GCTTTTTCATTTGGTTTGCGC 58.361 42.857 0.00 0.00 0.00 6.09
2108 2332 2.031437 GCTTTTTCATTTGGTTTGCGCA 59.969 40.909 5.66 5.66 0.00 6.09
2109 2333 3.606422 CTTTTTCATTTGGTTTGCGCAC 58.394 40.909 11.12 0.00 0.00 5.34
2111 2335 0.101399 TTCATTTGGTTTGCGCACGT 59.899 45.000 11.12 0.00 0.00 4.49
2112 2336 0.101399 TCATTTGGTTTGCGCACGTT 59.899 45.000 11.12 0.00 0.00 3.99
2114 2338 0.932585 ATTTGGTTTGCGCACGTTCG 60.933 50.000 11.12 2.39 0.00 3.95
2115 2339 2.921538 TTTGGTTTGCGCACGTTCGG 62.922 55.000 11.12 0.00 0.00 4.30
2117 2341 3.944233 GTTTGCGCACGTTCGGGT 61.944 61.111 11.12 0.00 0.00 5.28
2118 2342 3.641986 TTTGCGCACGTTCGGGTC 61.642 61.111 11.12 0.00 0.00 4.46
2123 2349 3.708734 GCACGTTCGGGTCGGTTG 61.709 66.667 0.00 0.00 0.00 3.77
2138 2364 3.006217 GTCGGTTGGGACTACTTGTAAGT 59.994 47.826 2.51 2.51 42.91 2.24
2255 2483 5.617529 GCTTTAGGTTACCGCAAAATTACGT 60.618 40.000 0.00 0.00 0.00 3.57
2265 2493 6.440436 ACCGCAAAATTACGTGTTTTCTTAT 58.560 32.000 0.00 0.00 0.00 1.73
2266 2494 6.361214 ACCGCAAAATTACGTGTTTTCTTATG 59.639 34.615 0.00 0.00 0.00 1.90
2277 2505 6.086222 CGTGTTTTCTTATGGGTGAAATGAG 58.914 40.000 0.00 0.00 33.04 2.90
2281 2509 3.889815 TCTTATGGGTGAAATGAGCCAG 58.110 45.455 0.00 0.00 46.43 4.85
2304 2532 3.464907 CTCAACATGATAGCTCTGGTGG 58.535 50.000 0.00 0.00 0.00 4.61
2313 2541 0.693049 AGCTCTGGTGGTACTTTGGG 59.307 55.000 0.00 0.00 0.00 4.12
2331 2559 1.742831 GGGCATGCGATGTAGTTTTCA 59.257 47.619 12.44 0.00 0.00 2.69
2332 2560 2.358898 GGGCATGCGATGTAGTTTTCAT 59.641 45.455 12.44 0.00 0.00 2.57
2344 2572 8.788813 CGATGTAGTTTTCATGAATTAACTTGC 58.211 33.333 23.73 18.33 33.28 4.01
2347 2575 8.417106 TGTAGTTTTCATGAATTAACTTGCCAA 58.583 29.630 23.73 8.79 33.28 4.52
2355 2583 4.202202 TGAATTAACTTGCCAAACCACCTG 60.202 41.667 0.00 0.00 0.00 4.00
2366 2594 4.588899 CCAAACCACCTGAGATATGTGAA 58.411 43.478 0.00 0.00 31.66 3.18
2404 2632 4.619973 TGATGTTGGCTTGCTTGTTTTAG 58.380 39.130 0.00 0.00 0.00 1.85
2405 2633 3.451141 TGTTGGCTTGCTTGTTTTAGG 57.549 42.857 0.00 0.00 0.00 2.69
2410 2638 2.360801 GGCTTGCTTGTTTTAGGACACA 59.639 45.455 0.00 0.00 0.00 3.72
2414 2649 5.735922 GCTTGCTTGTTTTAGGACACATCAA 60.736 40.000 0.00 0.00 0.00 2.57
2419 2654 6.198966 GCTTGTTTTAGGACACATCAACTTTG 59.801 38.462 0.00 0.00 0.00 2.77
2421 2656 7.164230 TGTTTTAGGACACATCAACTTTGTT 57.836 32.000 0.00 0.00 0.00 2.83
2429 2664 6.183360 GGACACATCAACTTTGTTGAACCTAA 60.183 38.462 15.61 0.00 33.32 2.69
2444 2680 7.861176 TTGAACCTAATTATTTCAACAACGC 57.139 32.000 14.22 0.00 34.96 4.84
2445 2681 6.081049 TGAACCTAATTATTTCAACAACGCG 58.919 36.000 3.53 3.53 0.00 6.01
2446 2682 4.408694 ACCTAATTATTTCAACAACGCGC 58.591 39.130 5.73 0.00 0.00 6.86
2447 2683 3.477090 CCTAATTATTTCAACAACGCGCG 59.523 43.478 30.96 30.96 0.00 6.86
2448 2684 1.889891 ATTATTTCAACAACGCGCGG 58.110 45.000 35.22 19.92 0.00 6.46
2449 2685 0.866427 TTATTTCAACAACGCGCGGA 59.134 45.000 35.22 18.42 0.00 5.54
2450 2686 1.080298 TATTTCAACAACGCGCGGAT 58.920 45.000 35.22 20.10 0.00 4.18
2456 2692 1.837747 CAACAACGCGCGGATAAATTC 59.162 47.619 35.22 0.00 0.00 2.17
2463 2699 2.030457 CGCGCGGATAAATTCAAACTCT 59.970 45.455 24.84 0.00 0.00 3.24
2465 2701 4.029043 GCGCGGATAAATTCAAACTCTTC 58.971 43.478 8.83 0.00 0.00 2.87
2471 2707 6.314784 GGATAAATTCAAACTCTTCGTGGTG 58.685 40.000 0.00 0.00 0.00 4.17
2485 2721 4.106029 TCGTGGTGTAAGCTATTGACTC 57.894 45.455 0.00 0.00 33.76 3.36
2487 2723 4.219944 TCGTGGTGTAAGCTATTGACTCTT 59.780 41.667 0.00 0.00 33.76 2.85
2511 2747 9.967346 CTTACTGAGCAGTAACTTATATTGCTA 57.033 33.333 16.74 0.00 45.82 3.49
2513 2749 8.879342 ACTGAGCAGTAACTTATATTGCTAAG 57.121 34.615 13.04 13.04 45.08 2.18
2568 2806 3.324556 TCTGATGACATGACTTGGTGTGA 59.675 43.478 0.00 0.00 0.00 3.58
2572 2810 2.298729 TGACATGACTTGGTGTGATCGA 59.701 45.455 0.00 0.00 0.00 3.59
2573 2811 3.055891 TGACATGACTTGGTGTGATCGAT 60.056 43.478 0.00 0.00 0.00 3.59
2580 2818 6.873997 TGACTTGGTGTGATCGATATTAGTT 58.126 36.000 0.00 0.00 0.00 2.24
2584 2822 5.423886 TGGTGTGATCGATATTAGTTTGCA 58.576 37.500 0.00 0.00 0.00 4.08
2609 2847 1.448119 CGATAGAGCACGCCTCCTCA 61.448 60.000 0.50 0.00 41.74 3.86
2610 2848 0.965439 GATAGAGCACGCCTCCTCAT 59.035 55.000 0.50 0.00 41.74 2.90
2612 2850 1.195115 TAGAGCACGCCTCCTCATTT 58.805 50.000 0.50 0.00 41.74 2.32
2615 2853 0.613260 AGCACGCCTCCTCATTTGTA 59.387 50.000 0.00 0.00 0.00 2.41
2616 2854 0.727398 GCACGCCTCCTCATTTGTAC 59.273 55.000 0.00 0.00 0.00 2.90
2617 2855 1.369625 CACGCCTCCTCATTTGTACC 58.630 55.000 0.00 0.00 0.00 3.34
2622 2860 2.357154 GCCTCCTCATTTGTACCCATGT 60.357 50.000 0.00 0.00 0.00 3.21
2644 2883 5.591067 TGTATCTTGGGTTTGTTTTCGAGTT 59.409 36.000 0.00 0.00 0.00 3.01
2648 2887 6.731164 TCTTGGGTTTGTTTTCGAGTTTATC 58.269 36.000 0.00 0.00 0.00 1.75
2696 2935 5.416013 TCAACCACAACATGTGTCTAAACAA 59.584 36.000 0.00 0.00 46.45 2.83
2742 2981 9.335211 TCCTTAATTACTCTATCCCTAATTCCC 57.665 37.037 0.00 0.00 0.00 3.97
2743 2982 9.340223 CCTTAATTACTCTATCCCTAATTCCCT 57.660 37.037 0.00 0.00 0.00 4.20
2747 2986 9.860393 AATTACTCTATCCCTAATTCCCTATGT 57.140 33.333 0.00 0.00 0.00 2.29
2749 2988 9.992442 TTACTCTATCCCTAATTCCCTATGTAG 57.008 37.037 0.00 0.00 0.00 2.74
2753 3027 9.716556 TCTATCCCTAATTCCCTATGTAGAATC 57.283 37.037 0.00 0.00 31.54 2.52
2756 3030 8.380742 TCCCTAATTCCCTATGTAGAATCATC 57.619 38.462 0.00 0.00 31.54 2.92
2765 3039 8.406297 TCCCTATGTAGAATCATCGATATTTCG 58.594 37.037 0.00 0.00 46.87 3.46
2768 3042 6.340962 TGTAGAATCATCGATATTTCGGGT 57.659 37.500 0.00 0.00 45.53 5.28
2775 3049 1.760613 TCGATATTTCGGGTTGGAGCT 59.239 47.619 5.72 0.00 45.53 4.09
2784 3058 0.687354 GGGTTGGAGCTGAAGAGTCA 59.313 55.000 0.00 0.00 0.00 3.41
2786 3060 2.501723 GGGTTGGAGCTGAAGAGTCATA 59.498 50.000 0.00 0.00 31.85 2.15
2787 3061 3.135530 GGGTTGGAGCTGAAGAGTCATAT 59.864 47.826 0.00 0.00 31.85 1.78
2790 3064 5.649831 GGTTGGAGCTGAAGAGTCATATTTT 59.350 40.000 0.00 0.00 31.85 1.82
2792 3066 6.992063 TGGAGCTGAAGAGTCATATTTTTC 57.008 37.500 0.00 0.00 31.85 2.29
2793 3067 6.715280 TGGAGCTGAAGAGTCATATTTTTCT 58.285 36.000 0.00 0.00 31.85 2.52
2795 3069 7.335422 TGGAGCTGAAGAGTCATATTTTTCTTC 59.665 37.037 0.00 10.70 43.57 2.87
2797 3071 8.266392 AGCTGAAGAGTCATATTTTTCTTCTG 57.734 34.615 15.49 15.39 43.62 3.02
2799 3073 8.725148 GCTGAAGAGTCATATTTTTCTTCTGAA 58.275 33.333 19.76 0.00 43.62 3.02
2801 3075 9.784531 TGAAGAGTCATATTTTTCTTCTGAAGT 57.215 29.630 16.43 0.38 43.62 3.01
2803 3077 8.558973 AGAGTCATATTTTTCTTCTGAAGTGG 57.441 34.615 16.43 0.00 33.28 4.00
2805 3079 8.103948 AGTCATATTTTTCTTCTGAAGTGGTG 57.896 34.615 16.43 7.88 33.28 4.17
2806 3080 7.175641 AGTCATATTTTTCTTCTGAAGTGGTGG 59.824 37.037 16.43 2.13 33.28 4.61
2807 3081 4.590850 ATTTTTCTTCTGAAGTGGTGGC 57.409 40.909 16.43 0.00 33.28 5.01
2808 3082 1.593196 TTTCTTCTGAAGTGGTGGCG 58.407 50.000 16.43 0.00 33.28 5.69
2811 3085 1.140052 TCTTCTGAAGTGGTGGCGAAA 59.860 47.619 16.43 0.00 0.00 3.46
2843 3127 4.484297 CATCGATTGATGCACGCG 57.516 55.556 10.05 3.53 45.06 6.01
2844 3128 1.720107 CATCGATTGATGCACGCGC 60.720 57.895 5.73 0.00 45.06 6.86
2860 3144 1.576421 CGCACCTGAAGAACCTTGC 59.424 57.895 0.00 0.00 0.00 4.01
2864 3148 2.226674 GCACCTGAAGAACCTTGCTAAC 59.773 50.000 0.00 0.00 0.00 2.34
2875 3159 6.749139 AGAACCTTGCTAACCATTTTTCTTC 58.251 36.000 0.00 0.00 0.00 2.87
2878 3162 3.196007 TGCTAACCATTTTTCTTCGCG 57.804 42.857 0.00 0.00 0.00 5.87
2881 3165 3.360758 GCTAACCATTTTTCTTCGCGTTG 59.639 43.478 5.77 0.00 0.00 4.10
2882 3166 2.415697 ACCATTTTTCTTCGCGTTGG 57.584 45.000 5.77 4.48 0.00 3.77
2884 3168 2.287368 ACCATTTTTCTTCGCGTTGGTC 60.287 45.455 5.77 0.00 30.38 4.02
2904 3188 2.564062 TCGACCAACTAATTTCGACCCT 59.436 45.455 0.00 0.00 35.64 4.34
2905 3189 2.671396 CGACCAACTAATTTCGACCCTG 59.329 50.000 0.00 0.00 33.20 4.45
2906 3190 3.615592 CGACCAACTAATTTCGACCCTGA 60.616 47.826 0.00 0.00 33.20 3.86
2907 3191 3.933332 GACCAACTAATTTCGACCCTGAG 59.067 47.826 0.00 0.00 0.00 3.35
2908 3192 3.581332 ACCAACTAATTTCGACCCTGAGA 59.419 43.478 0.00 0.00 0.00 3.27
2909 3193 4.225267 ACCAACTAATTTCGACCCTGAGAT 59.775 41.667 0.00 0.00 0.00 2.75
2910 3194 5.186198 CCAACTAATTTCGACCCTGAGATT 58.814 41.667 0.00 0.00 0.00 2.40
2911 3195 5.648092 CCAACTAATTTCGACCCTGAGATTT 59.352 40.000 0.00 0.00 0.00 2.17
2912 3196 6.151144 CCAACTAATTTCGACCCTGAGATTTT 59.849 38.462 0.00 0.00 0.00 1.82
2913 3197 7.309194 CCAACTAATTTCGACCCTGAGATTTTT 60.309 37.037 0.00 0.00 0.00 1.94
2914 3198 7.379098 ACTAATTTCGACCCTGAGATTTTTC 57.621 36.000 0.00 0.00 0.00 2.29
2915 3199 4.946784 ATTTCGACCCTGAGATTTTTCG 57.053 40.909 0.00 0.00 0.00 3.46
2916 3200 3.396260 TTCGACCCTGAGATTTTTCGT 57.604 42.857 0.00 0.00 0.00 3.85
2917 3201 2.683968 TCGACCCTGAGATTTTTCGTG 58.316 47.619 0.00 0.00 0.00 4.35
2918 3202 2.297880 TCGACCCTGAGATTTTTCGTGA 59.702 45.455 0.00 0.00 0.00 4.35
2919 3203 3.064207 CGACCCTGAGATTTTTCGTGAA 58.936 45.455 0.00 0.00 0.00 3.18
2920 3204 3.120649 CGACCCTGAGATTTTTCGTGAAC 60.121 47.826 0.00 0.00 0.00 3.18
2921 3205 2.806244 ACCCTGAGATTTTTCGTGAACG 59.194 45.455 0.00 0.00 41.45 3.95
2933 3217 2.683968 TCGTGAACGAATCAAAGAGGG 58.316 47.619 2.48 0.00 46.30 4.30
2934 3218 1.732259 CGTGAACGAATCAAAGAGGGG 59.268 52.381 0.00 0.00 40.50 4.79
2935 3219 2.611971 CGTGAACGAATCAAAGAGGGGA 60.612 50.000 0.00 0.00 40.50 4.81
2936 3220 3.408634 GTGAACGAATCAAAGAGGGGAA 58.591 45.455 0.00 0.00 40.50 3.97
2937 3221 3.437049 GTGAACGAATCAAAGAGGGGAAG 59.563 47.826 0.00 0.00 40.50 3.46
2938 3222 3.072476 TGAACGAATCAAAGAGGGGAAGT 59.928 43.478 0.00 0.00 34.30 3.01
2939 3223 4.285003 TGAACGAATCAAAGAGGGGAAGTA 59.715 41.667 0.00 0.00 34.30 2.24
2940 3224 4.473477 ACGAATCAAAGAGGGGAAGTAG 57.527 45.455 0.00 0.00 0.00 2.57
2941 3225 3.838903 ACGAATCAAAGAGGGGAAGTAGT 59.161 43.478 0.00 0.00 0.00 2.73
2942 3226 5.021458 ACGAATCAAAGAGGGGAAGTAGTA 58.979 41.667 0.00 0.00 0.00 1.82
2943 3227 5.661759 ACGAATCAAAGAGGGGAAGTAGTAT 59.338 40.000 0.00 0.00 0.00 2.12
2944 3228 6.837568 ACGAATCAAAGAGGGGAAGTAGTATA 59.162 38.462 0.00 0.00 0.00 1.47
2945 3229 7.509659 ACGAATCAAAGAGGGGAAGTAGTATAT 59.490 37.037 0.00 0.00 0.00 0.86
2946 3230 9.021807 CGAATCAAAGAGGGGAAGTAGTATATA 57.978 37.037 0.00 0.00 0.00 0.86
2971 3255 8.934023 ATATATTTTTGCGAATAAGAGGGGAA 57.066 30.769 0.00 0.00 0.00 3.97
2972 3256 5.582689 ATTTTTGCGAATAAGAGGGGAAG 57.417 39.130 0.00 0.00 0.00 3.46
2973 3257 3.713826 TTTGCGAATAAGAGGGGAAGT 57.286 42.857 0.00 0.00 0.00 3.01
2974 3258 4.829872 TTTGCGAATAAGAGGGGAAGTA 57.170 40.909 0.00 0.00 0.00 2.24
2975 3259 4.402056 TTGCGAATAAGAGGGGAAGTAG 57.598 45.455 0.00 0.00 0.00 2.57
2976 3260 3.371965 TGCGAATAAGAGGGGAAGTAGT 58.628 45.455 0.00 0.00 0.00 2.73
2977 3261 4.539726 TGCGAATAAGAGGGGAAGTAGTA 58.460 43.478 0.00 0.00 0.00 1.82
2978 3262 5.145564 TGCGAATAAGAGGGGAAGTAGTAT 58.854 41.667 0.00 0.00 0.00 2.12
2979 3263 6.309357 TGCGAATAAGAGGGGAAGTAGTATA 58.691 40.000 0.00 0.00 0.00 1.47
2980 3264 6.952358 TGCGAATAAGAGGGGAAGTAGTATAT 59.048 38.462 0.00 0.00 0.00 0.86
2981 3265 8.111545 TGCGAATAAGAGGGGAAGTAGTATATA 58.888 37.037 0.00 0.00 0.00 0.86
2982 3266 8.964772 GCGAATAAGAGGGGAAGTAGTATATAA 58.035 37.037 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.421399 AGGAAGAAAAAGAAAGGAAGATTACAA 57.579 29.630 0.00 0.00 0.00 2.41
13 14 8.996651 AGGAAGAAAAAGAAAGGAAGATTACA 57.003 30.769 0.00 0.00 0.00 2.41
17 18 9.813826 TCATAAGGAAGAAAAAGAAAGGAAGAT 57.186 29.630 0.00 0.00 0.00 2.40
18 19 9.813826 ATCATAAGGAAGAAAAAGAAAGGAAGA 57.186 29.630 0.00 0.00 0.00 2.87
99 100 2.869801 GGAGTTGATGTCACAAACGTGA 59.130 45.455 0.00 0.00 41.13 4.35
132 135 6.479095 AAATTGGGCAAATATGTGAAAACG 57.521 33.333 0.00 0.00 0.00 3.60
147 150 3.066380 CACCAGTTTGCTTAAATTGGGC 58.934 45.455 15.62 0.00 41.98 5.36
277 280 0.251297 TGCTCCCCAATTGACAGGTG 60.251 55.000 7.12 6.89 0.00 4.00
322 325 1.619807 GGGGGAGATTTCGGGTTCGA 61.620 60.000 0.00 0.00 44.44 3.71
350 365 0.390860 CGGCTGGGGATGAGTCTTAG 59.609 60.000 0.00 0.00 0.00 2.18
365 380 0.603975 GGTTTGCTCTCAGTTCGGCT 60.604 55.000 0.00 0.00 0.00 5.52
370 385 2.435805 TCTGTCTGGTTTGCTCTCAGTT 59.564 45.455 0.00 0.00 0.00 3.16
390 405 6.422701 GGCTGGTTTATTTTACTGTTTGGTTC 59.577 38.462 0.00 0.00 0.00 3.62
418 433 0.599060 TGTTGACTGTGCATGCCATG 59.401 50.000 16.68 0.00 0.00 3.66
454 469 9.260002 GTGCCACAAATTATCCCATTTATTTAG 57.740 33.333 0.00 0.00 0.00 1.85
600 722 5.531287 GCAATAGTAGGATAAAACCCCACTG 59.469 44.000 0.00 0.00 31.29 3.66
634 756 7.621428 AATGATCATTTCTCACTCGATGTTT 57.379 32.000 15.36 0.00 0.00 2.83
655 780 9.672086 GTCTATAGCACAGTAGAACTAGAAATG 57.328 37.037 0.00 0.00 0.00 2.32
663 788 8.853469 ATAAAACGTCTATAGCACAGTAGAAC 57.147 34.615 0.00 0.00 0.00 3.01
709 834 8.704668 GGAGGGAGTAGTACTATAGTATACTCC 58.295 44.444 35.09 35.09 45.73 3.85
710 835 8.413229 CGGAGGGAGTAGTACTATAGTATACTC 58.587 44.444 28.57 28.57 38.74 2.59
711 836 7.898636 ACGGAGGGAGTAGTACTATAGTATACT 59.101 40.741 22.01 22.01 35.76 2.12
712 837 8.073467 ACGGAGGGAGTAGTACTATAGTATAC 57.927 42.308 15.53 16.23 32.54 1.47
713 838 8.671987 AACGGAGGGAGTAGTACTATAGTATA 57.328 38.462 15.53 6.86 32.54 1.47
714 839 7.566658 AACGGAGGGAGTAGTACTATAGTAT 57.433 40.000 15.53 7.72 32.54 2.12
715 840 7.071196 TGAAACGGAGGGAGTAGTACTATAGTA 59.929 40.741 8.59 8.59 0.00 1.82
716 841 5.903198 AACGGAGGGAGTAGTACTATAGT 57.097 43.478 10.87 10.87 0.00 2.12
717 842 6.294473 TGAAACGGAGGGAGTAGTACTATAG 58.706 44.000 5.75 0.00 0.00 1.31
718 843 6.252599 TGAAACGGAGGGAGTAGTACTATA 57.747 41.667 5.75 0.00 0.00 1.31
719 844 5.121380 TGAAACGGAGGGAGTAGTACTAT 57.879 43.478 5.75 0.00 0.00 2.12
720 845 4.574674 TGAAACGGAGGGAGTAGTACTA 57.425 45.455 1.88 0.00 0.00 1.82
721 846 3.446442 TGAAACGGAGGGAGTAGTACT 57.554 47.619 1.37 1.37 0.00 2.73
722 847 4.525912 TTTGAAACGGAGGGAGTAGTAC 57.474 45.455 0.00 0.00 0.00 2.73
723 848 5.750352 AATTTGAAACGGAGGGAGTAGTA 57.250 39.130 0.00 0.00 0.00 1.82
724 849 4.635699 AATTTGAAACGGAGGGAGTAGT 57.364 40.909 0.00 0.00 0.00 2.73
725 850 5.731591 AGTAATTTGAAACGGAGGGAGTAG 58.268 41.667 0.00 0.00 0.00 2.57
726 851 5.622914 CGAGTAATTTGAAACGGAGGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
727 852 4.576879 GAGTAATTTGAAACGGAGGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
728 853 3.617263 CGAGTAATTTGAAACGGAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
729 854 3.007182 ACGAGTAATTTGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
730 855 3.332034 ACGAGTAATTTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
731 856 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
732 857 3.671928 ACGACGAGTAATTTGAAACGGAG 59.328 43.478 0.00 0.00 0.00 4.63
733 858 3.426191 CACGACGAGTAATTTGAAACGGA 59.574 43.478 0.00 0.00 0.00 4.69
734 859 3.422603 CCACGACGAGTAATTTGAAACGG 60.423 47.826 0.00 0.00 0.00 4.44
735 860 3.182972 ACCACGACGAGTAATTTGAAACG 59.817 43.478 0.00 0.00 0.00 3.60
736 861 4.720530 ACCACGACGAGTAATTTGAAAC 57.279 40.909 0.00 0.00 0.00 2.78
737 862 5.738118 AAACCACGACGAGTAATTTGAAA 57.262 34.783 0.00 0.00 0.00 2.69
738 863 5.738118 AAAACCACGACGAGTAATTTGAA 57.262 34.783 0.00 0.00 0.00 2.69
739 864 5.984926 ACTAAAACCACGACGAGTAATTTGA 59.015 36.000 0.00 0.00 0.00 2.69
740 865 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
741 866 6.849588 AACTAAAACCACGACGAGTAATTT 57.150 33.333 0.00 0.34 0.00 1.82
742 867 6.849588 AAACTAAAACCACGACGAGTAATT 57.150 33.333 0.00 1.08 0.00 1.40
743 868 7.945033 TTAAACTAAAACCACGACGAGTAAT 57.055 32.000 0.00 0.00 0.00 1.89
744 869 7.763172 TTTAAACTAAAACCACGACGAGTAA 57.237 32.000 0.00 0.00 0.00 2.24
745 870 7.945033 ATTTAAACTAAAACCACGACGAGTA 57.055 32.000 0.00 0.00 0.00 2.59
746 871 6.849588 ATTTAAACTAAAACCACGACGAGT 57.150 33.333 0.00 0.00 0.00 4.18
747 872 9.649024 TTAAATTTAAACTAAAACCACGACGAG 57.351 29.630 8.20 0.00 0.00 4.18
748 873 9.994432 TTTAAATTTAAACTAAAACCACGACGA 57.006 25.926 17.45 0.00 0.00 4.20
763 888 9.994432 TCGTCGTGGTTTTAGTTTAAATTTAAA 57.006 25.926 17.45 17.45 0.00 1.52
764 889 9.649024 CTCGTCGTGGTTTTAGTTTAAATTTAA 57.351 29.630 6.54 6.54 0.00 1.52
765 890 8.825745 ACTCGTCGTGGTTTTAGTTTAAATTTA 58.174 29.630 0.00 0.00 0.00 1.40
766 891 7.696755 ACTCGTCGTGGTTTTAGTTTAAATTT 58.303 30.769 0.00 0.00 0.00 1.82
767 892 7.250445 ACTCGTCGTGGTTTTAGTTTAAATT 57.750 32.000 0.00 0.00 0.00 1.82
768 893 6.849588 ACTCGTCGTGGTTTTAGTTTAAAT 57.150 33.333 0.00 0.00 0.00 1.40
769 894 7.763172 TTACTCGTCGTGGTTTTAGTTTAAA 57.237 32.000 0.00 0.00 0.00 1.52
770 895 7.945033 ATTACTCGTCGTGGTTTTAGTTTAA 57.055 32.000 0.00 0.00 0.00 1.52
771 896 7.945033 AATTACTCGTCGTGGTTTTAGTTTA 57.055 32.000 0.00 0.00 0.00 2.01
772 897 6.849588 AATTACTCGTCGTGGTTTTAGTTT 57.150 33.333 0.00 0.00 0.00 2.66
773 898 6.849588 AAATTACTCGTCGTGGTTTTAGTT 57.150 33.333 0.00 0.00 0.00 2.24
774 899 6.479660 TCAAAATTACTCGTCGTGGTTTTAGT 59.520 34.615 0.00 0.00 0.00 2.24
775 900 6.879962 TCAAAATTACTCGTCGTGGTTTTAG 58.120 36.000 0.00 0.00 0.00 1.85
776 901 6.841443 TCAAAATTACTCGTCGTGGTTTTA 57.159 33.333 0.00 0.00 0.00 1.52
777 902 5.738118 TCAAAATTACTCGTCGTGGTTTT 57.262 34.783 0.00 1.53 0.00 2.43
778 903 5.295045 AGTTCAAAATTACTCGTCGTGGTTT 59.705 36.000 0.00 0.00 0.00 3.27
779 904 4.812626 AGTTCAAAATTACTCGTCGTGGTT 59.187 37.500 0.00 0.00 0.00 3.67
780 905 4.374399 AGTTCAAAATTACTCGTCGTGGT 58.626 39.130 0.00 0.00 0.00 4.16
781 906 4.985044 AGTTCAAAATTACTCGTCGTGG 57.015 40.909 0.00 0.00 0.00 4.94
782 907 7.319615 GGTTTTAGTTCAAAATTACTCGTCGTG 59.680 37.037 0.00 0.00 38.36 4.35
783 908 7.011295 TGGTTTTAGTTCAAAATTACTCGTCGT 59.989 33.333 0.00 0.00 38.36 4.34
784 909 7.319615 GTGGTTTTAGTTCAAAATTACTCGTCG 59.680 37.037 0.00 0.00 38.36 5.12
785 910 7.319615 CGTGGTTTTAGTTCAAAATTACTCGTC 59.680 37.037 0.00 0.00 38.36 4.20
786 911 7.011295 TCGTGGTTTTAGTTCAAAATTACTCGT 59.989 33.333 0.00 0.00 38.36 4.18
787 912 7.346695 TCGTGGTTTTAGTTCAAAATTACTCG 58.653 34.615 0.00 0.00 38.36 4.18
788 913 9.113876 CATCGTGGTTTTAGTTCAAAATTACTC 57.886 33.333 0.00 0.00 38.36 2.59
789 914 8.842280 TCATCGTGGTTTTAGTTCAAAATTACT 58.158 29.630 0.00 0.00 38.36 2.24
790 915 9.113876 CTCATCGTGGTTTTAGTTCAAAATTAC 57.886 33.333 0.00 0.00 38.36 1.89
791 916 8.842280 ACTCATCGTGGTTTTAGTTCAAAATTA 58.158 29.630 0.00 0.00 38.36 1.40
792 917 7.712797 ACTCATCGTGGTTTTAGTTCAAAATT 58.287 30.769 0.00 0.00 38.36 1.82
793 918 7.272037 ACTCATCGTGGTTTTAGTTCAAAAT 57.728 32.000 0.00 0.00 38.36 1.82
794 919 6.687081 ACTCATCGTGGTTTTAGTTCAAAA 57.313 33.333 0.00 0.00 33.66 2.44
795 920 7.789273 TTACTCATCGTGGTTTTAGTTCAAA 57.211 32.000 0.00 0.00 0.00 2.69
796 921 7.972832 ATTACTCATCGTGGTTTTAGTTCAA 57.027 32.000 0.00 0.00 0.00 2.69
797 922 7.972832 AATTACTCATCGTGGTTTTAGTTCA 57.027 32.000 0.00 0.00 0.00 3.18
798 923 9.968743 CTAAATTACTCATCGTGGTTTTAGTTC 57.031 33.333 0.00 0.00 0.00 3.01
799 924 9.715121 TCTAAATTACTCATCGTGGTTTTAGTT 57.285 29.630 0.00 0.00 31.59 2.24
800 925 9.715121 TTCTAAATTACTCATCGTGGTTTTAGT 57.285 29.630 0.00 0.00 31.59 2.24
803 928 8.458843 CCATTCTAAATTACTCATCGTGGTTTT 58.541 33.333 0.00 0.00 0.00 2.43
804 929 7.827236 TCCATTCTAAATTACTCATCGTGGTTT 59.173 33.333 0.00 0.00 0.00 3.27
805 930 7.335627 TCCATTCTAAATTACTCATCGTGGTT 58.664 34.615 0.00 0.00 0.00 3.67
806 931 6.884832 TCCATTCTAAATTACTCATCGTGGT 58.115 36.000 0.00 0.00 0.00 4.16
807 932 6.425114 CCTCCATTCTAAATTACTCATCGTGG 59.575 42.308 0.00 0.00 0.00 4.94
808 933 6.425114 CCCTCCATTCTAAATTACTCATCGTG 59.575 42.308 0.00 0.00 0.00 4.35
809 934 6.326583 TCCCTCCATTCTAAATTACTCATCGT 59.673 38.462 0.00 0.00 0.00 3.73
810 935 6.759272 TCCCTCCATTCTAAATTACTCATCG 58.241 40.000 0.00 0.00 0.00 3.84
811 936 7.740805 ACTCCCTCCATTCTAAATTACTCATC 58.259 38.462 0.00 0.00 0.00 2.92
812 937 7.698163 ACTCCCTCCATTCTAAATTACTCAT 57.302 36.000 0.00 0.00 0.00 2.90
813 938 7.844779 ACTACTCCCTCCATTCTAAATTACTCA 59.155 37.037 0.00 0.00 0.00 3.41
814 939 8.252624 ACTACTCCCTCCATTCTAAATTACTC 57.747 38.462 0.00 0.00 0.00 2.59
815 940 8.625467 AACTACTCCCTCCATTCTAAATTACT 57.375 34.615 0.00 0.00 0.00 2.24
816 941 9.682465 AAAACTACTCCCTCCATTCTAAATTAC 57.318 33.333 0.00 0.00 0.00 1.89
817 942 9.681062 CAAAACTACTCCCTCCATTCTAAATTA 57.319 33.333 0.00 0.00 0.00 1.40
818 943 8.390921 TCAAAACTACTCCCTCCATTCTAAATT 58.609 33.333 0.00 0.00 0.00 1.82
819 944 7.928873 TCAAAACTACTCCCTCCATTCTAAAT 58.071 34.615 0.00 0.00 0.00 1.40
820 945 7.324388 TCAAAACTACTCCCTCCATTCTAAA 57.676 36.000 0.00 0.00 0.00 1.85
821 946 6.945636 TCAAAACTACTCCCTCCATTCTAA 57.054 37.500 0.00 0.00 0.00 2.10
822 947 6.729100 TCTTCAAAACTACTCCCTCCATTCTA 59.271 38.462 0.00 0.00 0.00 2.10
823 948 5.548056 TCTTCAAAACTACTCCCTCCATTCT 59.452 40.000 0.00 0.00 0.00 2.40
824 949 5.805728 TCTTCAAAACTACTCCCTCCATTC 58.194 41.667 0.00 0.00 0.00 2.67
825 950 5.280727 CCTCTTCAAAACTACTCCCTCCATT 60.281 44.000 0.00 0.00 0.00 3.16
826 951 4.226168 CCTCTTCAAAACTACTCCCTCCAT 59.774 45.833 0.00 0.00 0.00 3.41
827 952 3.583086 CCTCTTCAAAACTACTCCCTCCA 59.417 47.826 0.00 0.00 0.00 3.86
828 953 3.620226 GCCTCTTCAAAACTACTCCCTCC 60.620 52.174 0.00 0.00 0.00 4.30
829 954 3.601435 GCCTCTTCAAAACTACTCCCTC 58.399 50.000 0.00 0.00 0.00 4.30
830 955 2.028020 CGCCTCTTCAAAACTACTCCCT 60.028 50.000 0.00 0.00 0.00 4.20
831 956 2.289506 ACGCCTCTTCAAAACTACTCCC 60.290 50.000 0.00 0.00 0.00 4.30
832 957 2.737252 CACGCCTCTTCAAAACTACTCC 59.263 50.000 0.00 0.00 0.00 3.85
833 958 2.157863 GCACGCCTCTTCAAAACTACTC 59.842 50.000 0.00 0.00 0.00 2.59
834 959 2.143925 GCACGCCTCTTCAAAACTACT 58.856 47.619 0.00 0.00 0.00 2.57
835 960 2.096218 CAGCACGCCTCTTCAAAACTAC 60.096 50.000 0.00 0.00 0.00 2.73
836 961 2.143122 CAGCACGCCTCTTCAAAACTA 58.857 47.619 0.00 0.00 0.00 2.24
837 962 0.947244 CAGCACGCCTCTTCAAAACT 59.053 50.000 0.00 0.00 0.00 2.66
838 963 0.661483 GCAGCACGCCTCTTCAAAAC 60.661 55.000 0.00 0.00 32.94 2.43
839 964 1.100463 TGCAGCACGCCTCTTCAAAA 61.100 50.000 0.00 0.00 41.33 2.44
840 965 0.890542 ATGCAGCACGCCTCTTCAAA 60.891 50.000 0.00 0.00 41.33 2.69
841 966 0.890542 AATGCAGCACGCCTCTTCAA 60.891 50.000 0.00 0.00 41.33 2.69
842 967 1.302752 AATGCAGCACGCCTCTTCA 60.303 52.632 0.00 0.00 41.33 3.02
843 968 1.136147 CAATGCAGCACGCCTCTTC 59.864 57.895 0.00 0.00 41.33 2.87
844 969 1.601759 ACAATGCAGCACGCCTCTT 60.602 52.632 0.00 0.00 41.33 2.85
845 970 2.033141 ACAATGCAGCACGCCTCT 59.967 55.556 0.00 0.00 41.33 3.69
846 971 1.855213 TTCACAATGCAGCACGCCTC 61.855 55.000 0.00 0.00 41.33 4.70
847 972 1.454572 TTTCACAATGCAGCACGCCT 61.455 50.000 0.00 0.00 41.33 5.52
848 973 1.005294 CTTTCACAATGCAGCACGCC 61.005 55.000 0.00 0.00 41.33 5.68
849 974 0.318107 ACTTTCACAATGCAGCACGC 60.318 50.000 0.00 0.00 42.89 5.34
850 975 1.782569 CAACTTTCACAATGCAGCACG 59.217 47.619 0.00 0.00 0.00 5.34
851 976 3.047796 CTCAACTTTCACAATGCAGCAC 58.952 45.455 0.00 0.00 0.00 4.40
852 977 2.034939 CCTCAACTTTCACAATGCAGCA 59.965 45.455 0.00 0.00 0.00 4.41
853 978 2.608752 CCCTCAACTTTCACAATGCAGC 60.609 50.000 0.00 0.00 0.00 5.25
858 983 3.515602 AGCTCCCTCAACTTTCACAAT 57.484 42.857 0.00 0.00 0.00 2.71
861 986 4.009370 ACTTAGCTCCCTCAACTTTCAC 57.991 45.455 0.00 0.00 0.00 3.18
867 992 3.556365 GCGATTTACTTAGCTCCCTCAAC 59.444 47.826 0.00 0.00 0.00 3.18
868 993 3.451178 AGCGATTTACTTAGCTCCCTCAA 59.549 43.478 0.00 0.00 34.48 3.02
870 995 3.385577 CAGCGATTTACTTAGCTCCCTC 58.614 50.000 0.00 0.00 37.94 4.30
877 1002 4.402056 TTCCTCCCAGCGATTTACTTAG 57.598 45.455 0.00 0.00 0.00 2.18
878 1004 5.104693 TCAATTCCTCCCAGCGATTTACTTA 60.105 40.000 0.00 0.00 0.00 2.24
883 1009 2.806945 TCAATTCCTCCCAGCGATTT 57.193 45.000 0.00 0.00 0.00 2.17
889 1015 6.043706 ACACCTAGATATTCAATTCCTCCCAG 59.956 42.308 0.00 0.00 0.00 4.45
905 1031 2.158385 CCTCTCCTGGCTACACCTAGAT 60.158 54.545 0.00 0.00 40.22 1.98
950 1157 1.949847 CTCAGAGACGGACCGGCATT 61.950 60.000 24.57 6.31 37.34 3.56
951 1158 2.362503 TCAGAGACGGACCGGCAT 60.363 61.111 24.57 7.15 37.34 4.40
964 1171 3.432467 GGTCGTATGGTCTCTCTCTCAGA 60.432 52.174 0.00 0.00 0.00 3.27
967 1174 2.158726 AGGGTCGTATGGTCTCTCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
968 1175 1.847737 AGGGTCGTATGGTCTCTCTCT 59.152 52.381 0.00 0.00 0.00 3.10
981 1188 5.003804 GCCATGATCAATAATTAGGGTCGT 58.996 41.667 0.00 0.00 28.09 4.34
1063 1273 2.352814 GGTGGCGCTGTATATGTAGAGG 60.353 54.545 7.64 0.00 0.00 3.69
1064 1274 2.352814 GGGTGGCGCTGTATATGTAGAG 60.353 54.545 7.64 0.00 0.00 2.43
1065 1275 1.616865 GGGTGGCGCTGTATATGTAGA 59.383 52.381 7.64 0.00 0.00 2.59
1066 1276 1.618837 AGGGTGGCGCTGTATATGTAG 59.381 52.381 7.64 0.00 0.00 2.74
1067 1277 1.616865 GAGGGTGGCGCTGTATATGTA 59.383 52.381 7.64 0.00 0.00 2.29
1079 1289 3.412408 GGGAAGAGGGAGGGTGGC 61.412 72.222 0.00 0.00 0.00 5.01
1085 1295 3.140144 AGATGTAGAGAGGGAAGAGGGAG 59.860 52.174 0.00 0.00 0.00 4.30
1099 1311 0.847373 AGCGAGGAGGGAGATGTAGA 59.153 55.000 0.00 0.00 0.00 2.59
1102 1314 1.826054 CGAGCGAGGAGGGAGATGT 60.826 63.158 0.00 0.00 0.00 3.06
1103 1315 0.535328 TACGAGCGAGGAGGGAGATG 60.535 60.000 0.00 0.00 0.00 2.90
1105 1317 1.146485 CTACGAGCGAGGAGGGAGA 59.854 63.158 0.00 0.00 0.00 3.71
1107 1319 0.543277 TTACTACGAGCGAGGAGGGA 59.457 55.000 0.00 0.00 0.00 4.20
1109 1321 1.598601 GAGTTACTACGAGCGAGGAGG 59.401 57.143 0.00 0.00 0.00 4.30
1137 1353 4.459089 GAGGACCGTGCAGGGAGC 62.459 72.222 31.22 20.67 46.96 4.70
1201 1417 1.801913 CGCAGAGAGCACCACGTAC 60.802 63.158 0.00 0.00 46.13 3.67
1260 1480 1.139095 GGAGGAAGCGTAGGACGTG 59.861 63.158 0.00 0.00 44.73 4.49
1268 1488 1.313812 CGTGGAGTAGGAGGAAGCGT 61.314 60.000 0.00 0.00 0.00 5.07
1270 1490 0.456628 GACGTGGAGTAGGAGGAAGC 59.543 60.000 0.00 0.00 0.00 3.86
1313 1533 3.121030 CGTCCTGCCGCTTCTTGG 61.121 66.667 0.00 0.00 0.00 3.61
1362 1582 4.144727 TCCTCCTCCTCCTCGCCC 62.145 72.222 0.00 0.00 0.00 6.13
1363 1583 2.520741 CTCCTCCTCCTCCTCGCC 60.521 72.222 0.00 0.00 0.00 5.54
1364 1584 2.520741 CCTCCTCCTCCTCCTCGC 60.521 72.222 0.00 0.00 0.00 5.03
1365 1585 2.520741 GCCTCCTCCTCCTCCTCG 60.521 72.222 0.00 0.00 0.00 4.63
1366 1586 2.520741 CGCCTCCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
1367 1587 4.150454 CCGCCTCCTCCTCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
1696 1919 1.073319 TGGGGGAGGTTGAGGTTGA 60.073 57.895 0.00 0.00 0.00 3.18
1697 1920 1.074951 GTGGGGGAGGTTGAGGTTG 59.925 63.158 0.00 0.00 0.00 3.77
1698 1921 2.160853 GGTGGGGGAGGTTGAGGTT 61.161 63.158 0.00 0.00 0.00 3.50
1699 1922 2.531942 GGTGGGGGAGGTTGAGGT 60.532 66.667 0.00 0.00 0.00 3.85
1700 1923 3.717294 CGGTGGGGGAGGTTGAGG 61.717 72.222 0.00 0.00 0.00 3.86
1701 1924 4.410400 GCGGTGGGGGAGGTTGAG 62.410 72.222 0.00 0.00 0.00 3.02
1776 1999 3.781770 CTCATGCTCCGGCTCGTCC 62.782 68.421 0.00 0.00 39.59 4.79
1842 2065 4.457496 ACCATCTCCACCTGCGCG 62.457 66.667 0.00 0.00 0.00 6.86
1845 2068 1.021390 CGAACACCATCTCCACCTGC 61.021 60.000 0.00 0.00 0.00 4.85
1951 2174 0.684805 AGGAGAGGTTGGTAGCCGAG 60.685 60.000 0.00 0.00 0.00 4.63
1958 2181 1.238938 TCCCACAGGAGAGGTTGGT 59.761 57.895 0.00 0.00 37.19 3.67
1983 2206 4.783764 GGTGTTTTACAGCAAGCCTAAT 57.216 40.909 4.30 0.00 45.26 1.73
1992 2215 2.632544 GGGGCGGGTGTTTTACAGC 61.633 63.158 0.59 0.59 45.20 4.40
1993 2216 0.538746 AAGGGGCGGGTGTTTTACAG 60.539 55.000 0.00 0.00 0.00 2.74
1995 2218 0.537828 TCAAGGGGCGGGTGTTTTAC 60.538 55.000 0.00 0.00 0.00 2.01
1996 2219 0.406361 ATCAAGGGGCGGGTGTTTTA 59.594 50.000 0.00 0.00 0.00 1.52
1999 2222 0.898326 GAAATCAAGGGGCGGGTGTT 60.898 55.000 0.00 0.00 0.00 3.32
2001 2224 2.052104 GGAAATCAAGGGGCGGGTG 61.052 63.158 0.00 0.00 0.00 4.61
2002 2225 2.211468 GAGGAAATCAAGGGGCGGGT 62.211 60.000 0.00 0.00 0.00 5.28
2003 2226 1.453928 GAGGAAATCAAGGGGCGGG 60.454 63.158 0.00 0.00 0.00 6.13
2004 2227 0.464554 GAGAGGAAATCAAGGGGCGG 60.465 60.000 0.00 0.00 0.00 6.13
2005 2228 0.543749 AGAGAGGAAATCAAGGGGCG 59.456 55.000 0.00 0.00 0.00 6.13
2006 2229 2.240921 AGAAGAGAGGAAATCAAGGGGC 59.759 50.000 0.00 0.00 0.00 5.80
2007 2230 4.227073 AGAAGAAGAGAGGAAATCAAGGGG 59.773 45.833 0.00 0.00 0.00 4.79
2008 2231 5.434182 AGAAGAAGAGAGGAAATCAAGGG 57.566 43.478 0.00 0.00 0.00 3.95
2021 2244 8.246871 ACAAAACCAAGAAAAGAAGAAGAAGAG 58.753 33.333 0.00 0.00 0.00 2.85
2022 2245 8.028938 CACAAAACCAAGAAAAGAAGAAGAAGA 58.971 33.333 0.00 0.00 0.00 2.87
2023 2246 7.814587 ACACAAAACCAAGAAAAGAAGAAGAAG 59.185 33.333 0.00 0.00 0.00 2.85
2052 2276 8.721478 TGCTTCATTTTAAGTAGCACTAGAAAG 58.279 33.333 0.00 0.00 36.96 2.62
2092 2316 0.101399 ACGTGCGCAAACCAAATGAA 59.899 45.000 14.00 0.00 0.00 2.57
2107 2331 3.039588 CCAACCGACCCGAACGTG 61.040 66.667 0.00 0.00 0.00 4.49
2108 2332 4.303993 CCCAACCGACCCGAACGT 62.304 66.667 0.00 0.00 0.00 3.99
2109 2333 3.993584 TCCCAACCGACCCGAACG 61.994 66.667 0.00 0.00 0.00 3.95
2111 2335 1.228831 TAGTCCCAACCGACCCGAA 60.229 57.895 0.00 0.00 32.91 4.30
2112 2336 1.978617 GTAGTCCCAACCGACCCGA 60.979 63.158 0.00 0.00 32.91 5.14
2114 2338 0.036671 CAAGTAGTCCCAACCGACCC 60.037 60.000 0.00 0.00 32.91 4.46
2115 2339 0.683412 ACAAGTAGTCCCAACCGACC 59.317 55.000 0.00 0.00 32.91 4.79
2117 2341 3.233507 ACTTACAAGTAGTCCCAACCGA 58.766 45.455 0.00 0.00 37.52 4.69
2118 2342 3.672767 ACTTACAAGTAGTCCCAACCG 57.327 47.619 0.00 0.00 37.52 4.44
2123 2349 6.465084 ACATCTCAAACTTACAAGTAGTCCC 58.535 40.000 0.00 0.00 38.57 4.46
2138 2364 6.922957 GCTAAATTGGTCACAAACATCTCAAA 59.077 34.615 0.00 0.00 40.55 2.69
2208 2436 7.901002 AGCCCGCGTAATTTTATTTTATTTTG 58.099 30.769 4.92 0.00 0.00 2.44
2209 2437 8.481974 AAGCCCGCGTAATTTTATTTTATTTT 57.518 26.923 4.92 0.00 0.00 1.82
2210 2438 8.481974 AAAGCCCGCGTAATTTTATTTTATTT 57.518 26.923 4.92 0.00 0.00 1.40
2211 2439 9.240159 CTAAAGCCCGCGTAATTTTATTTTATT 57.760 29.630 4.92 0.00 0.00 1.40
2212 2440 7.863877 CCTAAAGCCCGCGTAATTTTATTTTAT 59.136 33.333 4.92 0.00 0.00 1.40
2213 2441 7.148103 ACCTAAAGCCCGCGTAATTTTATTTTA 60.148 33.333 4.92 0.00 0.00 1.52
2214 2442 6.037726 CCTAAAGCCCGCGTAATTTTATTTT 58.962 36.000 4.92 0.00 0.00 1.82
2215 2443 5.125900 ACCTAAAGCCCGCGTAATTTTATTT 59.874 36.000 4.92 0.00 0.00 1.40
2216 2444 4.641541 ACCTAAAGCCCGCGTAATTTTATT 59.358 37.500 4.92 0.00 0.00 1.40
2217 2445 4.201657 ACCTAAAGCCCGCGTAATTTTAT 58.798 39.130 4.92 0.00 0.00 1.40
2218 2446 3.608796 ACCTAAAGCCCGCGTAATTTTA 58.391 40.909 4.92 3.98 0.00 1.52
2219 2447 2.439409 ACCTAAAGCCCGCGTAATTTT 58.561 42.857 4.92 2.92 0.00 1.82
2220 2448 2.118313 ACCTAAAGCCCGCGTAATTT 57.882 45.000 4.92 5.13 0.00 1.82
2226 2454 2.169146 CGGTAACCTAAAGCCCGCG 61.169 63.158 0.00 0.00 0.00 6.46
2255 2483 5.047377 GGCTCATTTCACCCATAAGAAAACA 60.047 40.000 0.00 0.00 37.30 2.83
2265 2493 1.304381 GGCTGGCTCATTTCACCCA 60.304 57.895 0.00 0.00 0.00 4.51
2266 2494 1.000396 AGGCTGGCTCATTTCACCC 60.000 57.895 0.00 0.00 0.00 4.61
2277 2505 0.950116 GCTATCATGTTGAGGCTGGC 59.050 55.000 0.00 0.00 0.00 4.85
2281 2509 2.158842 ACCAGAGCTATCATGTTGAGGC 60.159 50.000 0.00 0.00 32.06 4.70
2304 2532 1.094785 ACATCGCATGCCCAAAGTAC 58.905 50.000 13.15 0.00 0.00 2.73
2313 2541 4.277257 TCATGAAAACTACATCGCATGC 57.723 40.909 7.91 7.91 34.64 4.06
2331 2559 4.592778 AGGTGGTTTGGCAAGTTAATTCAT 59.407 37.500 0.00 0.00 0.00 2.57
2332 2560 3.964031 AGGTGGTTTGGCAAGTTAATTCA 59.036 39.130 0.00 0.00 0.00 2.57
2344 2572 4.220693 TCACATATCTCAGGTGGTTTGG 57.779 45.455 0.00 0.00 39.44 3.28
2347 2575 3.264193 TGCTTCACATATCTCAGGTGGTT 59.736 43.478 0.00 0.00 39.44 3.67
2366 2594 4.530710 ACATCAATGTCAAGCAATTGCT 57.469 36.364 27.21 27.21 45.84 3.91
2381 2609 3.540314 AAACAAGCAAGCCAACATCAA 57.460 38.095 0.00 0.00 0.00 2.57
2382 2610 3.540314 AAAACAAGCAAGCCAACATCA 57.460 38.095 0.00 0.00 0.00 3.07
2404 2632 4.097892 AGGTTCAACAAAGTTGATGTGTCC 59.902 41.667 12.75 10.32 33.32 4.02
2405 2633 5.248870 AGGTTCAACAAAGTTGATGTGTC 57.751 39.130 12.75 3.04 33.32 3.67
2421 2656 6.081049 CGCGTTGTTGAAATAATTAGGTTCA 58.919 36.000 0.00 9.30 0.00 3.18
2429 2664 1.465387 TCCGCGCGTTGTTGAAATAAT 59.535 42.857 29.95 0.00 0.00 1.28
2444 2680 4.201685 ACGAAGAGTTTGAATTTATCCGCG 60.202 41.667 0.00 0.00 0.00 6.46
2445 2681 5.022021 CACGAAGAGTTTGAATTTATCCGC 58.978 41.667 0.00 0.00 0.00 5.54
2446 2682 5.121768 ACCACGAAGAGTTTGAATTTATCCG 59.878 40.000 0.00 0.00 0.00 4.18
2447 2683 6.072673 ACACCACGAAGAGTTTGAATTTATCC 60.073 38.462 0.00 0.00 0.00 2.59
2448 2684 6.899114 ACACCACGAAGAGTTTGAATTTATC 58.101 36.000 0.00 0.00 0.00 1.75
2449 2685 6.877611 ACACCACGAAGAGTTTGAATTTAT 57.122 33.333 0.00 0.00 0.00 1.40
2450 2686 7.519328 GCTTACACCACGAAGAGTTTGAATTTA 60.519 37.037 0.00 0.00 0.00 1.40
2456 2692 3.131396 AGCTTACACCACGAAGAGTTTG 58.869 45.455 0.00 0.00 0.00 2.93
2463 2699 4.219944 AGAGTCAATAGCTTACACCACGAA 59.780 41.667 0.00 0.00 0.00 3.85
2465 2701 4.111375 AGAGTCAATAGCTTACACCACG 57.889 45.455 0.00 0.00 0.00 4.94
2471 2707 6.565234 TGCTCAGTAAGAGTCAATAGCTTAC 58.435 40.000 0.00 0.00 46.47 2.34
2487 2723 9.967346 CTTAGCAATATAAGTTACTGCTCAGTA 57.033 33.333 15.59 5.69 42.21 2.74
2513 2749 1.352156 AACGAAAGCGATCGACCTGC 61.352 55.000 21.57 0.00 45.48 4.85
2547 2785 3.667360 TCACACCAAGTCATGTCATCAG 58.333 45.455 0.00 0.00 0.00 2.90
2568 2806 7.889589 TCGATCAATGCAAACTAATATCGAT 57.110 32.000 2.16 2.16 39.06 3.59
2572 2810 8.877779 GCTCTATCGATCAATGCAAACTAATAT 58.122 33.333 0.00 0.00 0.00 1.28
2573 2811 7.872483 TGCTCTATCGATCAATGCAAACTAATA 59.128 33.333 0.00 0.00 0.00 0.98
2580 2818 2.796593 CGTGCTCTATCGATCAATGCAA 59.203 45.455 0.00 0.00 0.00 4.08
2584 2822 1.615883 AGGCGTGCTCTATCGATCAAT 59.384 47.619 0.00 0.00 0.00 2.57
2601 2839 2.301346 CATGGGTACAAATGAGGAGGC 58.699 52.381 0.00 0.00 0.00 4.70
2617 2855 5.048364 TCGAAAACAAACCCAAGATACATGG 60.048 40.000 0.00 0.00 37.71 3.66
2622 2860 6.702716 AAACTCGAAAACAAACCCAAGATA 57.297 33.333 0.00 0.00 0.00 1.98
2644 2883 6.878923 ACATGAGAGACATTTGAAACCGATAA 59.121 34.615 0.00 0.00 37.07 1.75
2648 2887 6.668541 ATACATGAGAGACATTTGAAACCG 57.331 37.500 0.00 0.00 37.07 4.44
2659 2898 5.700832 TGTTGTGGTTGAATACATGAGAGAC 59.299 40.000 0.00 0.00 0.00 3.36
2660 2899 5.863965 TGTTGTGGTTGAATACATGAGAGA 58.136 37.500 0.00 0.00 0.00 3.10
2661 2900 6.149973 ACATGTTGTGGTTGAATACATGAGAG 59.850 38.462 17.43 0.00 45.46 3.20
2716 2955 9.335211 GGGAATTAGGGATAGAGTAATTAAGGA 57.665 37.037 0.00 0.00 0.00 3.36
2724 2963 9.360470 TCTACATAGGGAATTAGGGATAGAGTA 57.640 37.037 0.00 0.00 0.00 2.59
2765 3039 0.687354 TGACTCTTCAGCTCCAACCC 59.313 55.000 0.00 0.00 0.00 4.11
2768 3042 7.170965 AGAAAAATATGACTCTTCAGCTCCAA 58.829 34.615 0.00 0.00 34.35 3.53
2775 3049 9.784531 ACTTCAGAAGAAAAATATGACTCTTCA 57.215 29.630 17.56 2.45 44.06 3.02
2784 3058 5.106157 CGCCACCACTTCAGAAGAAAAATAT 60.106 40.000 17.56 0.00 32.35 1.28
2786 3060 3.004734 CGCCACCACTTCAGAAGAAAAAT 59.995 43.478 17.56 0.00 32.35 1.82
2787 3061 2.357637 CGCCACCACTTCAGAAGAAAAA 59.642 45.455 17.56 0.00 32.35 1.94
2790 3064 0.756294 TCGCCACCACTTCAGAAGAA 59.244 50.000 17.56 0.00 0.00 2.52
2792 3066 1.593196 TTTCGCCACCACTTCAGAAG 58.407 50.000 8.77 8.77 0.00 2.85
2793 3067 1.673920 GTTTTCGCCACCACTTCAGAA 59.326 47.619 0.00 0.00 0.00 3.02
2795 3069 1.308998 AGTTTTCGCCACCACTTCAG 58.691 50.000 0.00 0.00 0.00 3.02
2797 3071 1.001706 GGAAGTTTTCGCCACCACTTC 60.002 52.381 2.84 2.84 42.97 3.01
2799 3073 1.164041 CGGAAGTTTTCGCCACCACT 61.164 55.000 0.00 0.00 0.00 4.00
2801 3075 1.894756 CCGGAAGTTTTCGCCACCA 60.895 57.895 0.00 0.00 0.00 4.17
2803 3077 2.254350 GCCGGAAGTTTTCGCCAC 59.746 61.111 5.05 0.00 0.00 5.01
2805 3079 2.671963 AGGCCGGAAGTTTTCGCC 60.672 61.111 5.05 0.00 36.71 5.54
2806 3080 0.390735 TAGAGGCCGGAAGTTTTCGC 60.391 55.000 5.05 0.00 0.00 4.70
2807 3081 1.337447 TGTAGAGGCCGGAAGTTTTCG 60.337 52.381 5.05 0.00 0.00 3.46
2808 3082 2.467566 TGTAGAGGCCGGAAGTTTTC 57.532 50.000 5.05 0.00 0.00 2.29
2811 3085 0.460311 CGATGTAGAGGCCGGAAGTT 59.540 55.000 5.05 0.00 0.00 2.66
2840 3124 1.961277 AAGGTTCTTCAGGTGCGCG 60.961 57.895 0.00 0.00 0.00 6.86
2843 3127 2.185004 TAGCAAGGTTCTTCAGGTGC 57.815 50.000 0.00 0.00 0.00 5.01
2844 3128 2.814336 GGTTAGCAAGGTTCTTCAGGTG 59.186 50.000 0.00 0.00 0.00 4.00
2846 3130 3.140325 TGGTTAGCAAGGTTCTTCAGG 57.860 47.619 0.00 0.00 0.00 3.86
2860 3144 3.911964 CCAACGCGAAGAAAAATGGTTAG 59.088 43.478 15.93 0.00 0.00 2.34
2864 3148 2.315901 GACCAACGCGAAGAAAAATGG 58.684 47.619 15.93 9.95 0.00 3.16
2884 3168 2.671396 CAGGGTCGAAATTAGTTGGTCG 59.329 50.000 0.00 0.00 34.85 4.79
2891 3175 6.092259 ACGAAAAATCTCAGGGTCGAAATTAG 59.908 38.462 0.00 0.00 32.98 1.73
2894 3178 4.154195 CACGAAAAATCTCAGGGTCGAAAT 59.846 41.667 0.00 0.00 32.98 2.17
2898 3182 2.683968 TCACGAAAAATCTCAGGGTCG 58.316 47.619 0.00 0.00 34.77 4.79
2914 3198 1.732259 CCCCTCTTTGATTCGTTCACG 59.268 52.381 0.00 0.00 41.45 4.35
2915 3199 3.053831 TCCCCTCTTTGATTCGTTCAC 57.946 47.619 0.00 0.00 32.84 3.18
2916 3200 3.072476 ACTTCCCCTCTTTGATTCGTTCA 59.928 43.478 0.00 0.00 0.00 3.18
2917 3201 3.676093 ACTTCCCCTCTTTGATTCGTTC 58.324 45.455 0.00 0.00 0.00 3.95
2918 3202 3.790089 ACTTCCCCTCTTTGATTCGTT 57.210 42.857 0.00 0.00 0.00 3.85
2919 3203 3.838903 ACTACTTCCCCTCTTTGATTCGT 59.161 43.478 0.00 0.00 0.00 3.85
2920 3204 4.473477 ACTACTTCCCCTCTTTGATTCG 57.527 45.455 0.00 0.00 0.00 3.34
2946 3230 8.934023 TTCCCCTCTTATTCGCAAAAATATAT 57.066 30.769 0.00 0.00 0.00 0.86
2947 3231 7.996644 ACTTCCCCTCTTATTCGCAAAAATATA 59.003 33.333 0.00 0.00 0.00 0.86
2948 3232 6.833933 ACTTCCCCTCTTATTCGCAAAAATAT 59.166 34.615 0.00 0.00 0.00 1.28
2949 3233 6.184789 ACTTCCCCTCTTATTCGCAAAAATA 58.815 36.000 0.00 0.00 0.00 1.40
2950 3234 5.016831 ACTTCCCCTCTTATTCGCAAAAAT 58.983 37.500 0.00 0.00 0.00 1.82
2951 3235 4.403734 ACTTCCCCTCTTATTCGCAAAAA 58.596 39.130 0.00 0.00 0.00 1.94
2952 3236 4.028993 ACTTCCCCTCTTATTCGCAAAA 57.971 40.909 0.00 0.00 0.00 2.44
2953 3237 3.713826 ACTTCCCCTCTTATTCGCAAA 57.286 42.857 0.00 0.00 0.00 3.68
2954 3238 3.773119 ACTACTTCCCCTCTTATTCGCAA 59.227 43.478 0.00 0.00 0.00 4.85
2955 3239 3.371965 ACTACTTCCCCTCTTATTCGCA 58.628 45.455 0.00 0.00 0.00 5.10
2956 3240 5.725325 ATACTACTTCCCCTCTTATTCGC 57.275 43.478 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.