Multiple sequence alignment - TraesCS3A01G312900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G312900 chr3A 100.000 6491 0 0 868 7358 552624505 552618015 0.000000e+00 11987
1 TraesCS3A01G312900 chr3A 100.000 488 0 0 1 488 552625372 552624885 0.000000e+00 902
2 TraesCS3A01G312900 chr3D 90.745 2388 149 30 4996 7356 103640234 103642576 0.000000e+00 3120
3 TraesCS3A01G312900 chr3D 87.908 1778 148 31 2870 4617 103638066 103639806 0.000000e+00 2030
4 TraesCS3A01G312900 chr3D 88.784 1275 116 18 873 2140 103636011 103637265 0.000000e+00 1537
5 TraesCS3A01G312900 chr3D 95.833 480 13 2 1 479 103635485 103635958 0.000000e+00 769
6 TraesCS3A01G312900 chr3D 83.102 722 71 17 2179 2873 103637265 103637962 1.760000e-170 610
7 TraesCS3A01G312900 chr3B 90.738 1544 90 23 5831 7351 154216143 154217656 0.000000e+00 2010
8 TraesCS3A01G312900 chr3B 84.895 1900 179 50 888 2738 154211093 154212933 0.000000e+00 1820
9 TraesCS3A01G312900 chr3B 86.150 1213 104 27 3715 4889 154213859 154215045 0.000000e+00 1251
10 TraesCS3A01G312900 chr3B 86.879 846 73 18 2876 3710 154212953 154213771 0.000000e+00 913
11 TraesCS3A01G312900 chr3B 96.875 480 14 1 1 479 154210540 154211019 0.000000e+00 802
12 TraesCS3A01G312900 chr3B 91.963 535 27 7 4998 5521 154215049 154215578 0.000000e+00 736
13 TraesCS3A01G312900 chr4A 97.391 115 2 1 4889 5002 274959065 274958951 2.090000e-45 195
14 TraesCS3A01G312900 chr6A 98.198 111 1 1 4891 5000 579148321 579148211 7.530000e-45 193
15 TraesCS3A01G312900 chr6A 95.041 121 3 3 4885 5003 2971535 2971416 3.510000e-43 187
16 TraesCS3A01G312900 chr6A 91.603 131 6 5 4871 4999 64543048 64543175 7.590000e-40 176
17 TraesCS3A01G312900 chr2B 98.198 111 1 1 4891 5000 672018323 672018433 7.530000e-45 193
18 TraesCS3A01G312900 chr7A 97.345 113 2 1 4890 5001 685837619 685837731 2.710000e-44 191
19 TraesCS3A01G312900 chr5B 94.400 125 5 2 4889 5011 622393441 622393565 2.710000e-44 191
20 TraesCS3A01G312900 chr5B 95.041 121 5 1 4884 5003 711156464 711156344 9.750000e-44 189
21 TraesCS3A01G312900 chr1A 88.591 149 11 3 4852 4999 58903700 58903843 7.590000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G312900 chr3A 552618015 552625372 7357 True 6444.500000 11987 100.000000 1 7358 2 chr3A.!!$R1 7357
1 TraesCS3A01G312900 chr3D 103635485 103642576 7091 False 1613.200000 3120 89.274400 1 7356 5 chr3D.!!$F1 7355
2 TraesCS3A01G312900 chr3B 154210540 154217656 7116 False 1255.333333 2010 89.583333 1 7351 6 chr3B.!!$F1 7350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 988 0.107268 AAGGCGTAACTGTTTCCGGT 59.893 50.0 0.00 0.0 0.00 5.28 F
1502 1516 0.096454 GTTTCCACGCGATGCTAACC 59.904 55.0 15.93 0.0 0.00 2.85 F
1599 1618 0.546747 TGGGGTCAGTTAGGTCCCAG 60.547 60.0 0.00 0.0 42.21 4.45 F
2726 2796 0.679002 CATGGCAAGACACTCCCAGG 60.679 60.0 0.00 0.0 0.00 4.45 F
2929 3108 0.037590 TATGGGGCACACTGGTTGTC 59.962 55.0 0.00 0.0 35.67 3.18 F
4721 5196 0.248012 TTGCAGCCTCATGCCATTTG 59.752 50.0 0.00 0.0 45.91 2.32 F
5359 5845 0.038166 TTGCTCGGCTCCCAGAAATT 59.962 50.0 0.00 0.0 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2662 2732 0.622136 TCACATCCTGCCTGCAGAAT 59.378 50.000 20.29 2.36 46.30 2.40 R
2706 2776 0.679002 CTGGGAGTGTCTTGCCATGG 60.679 60.000 7.63 7.63 37.96 3.66 R
2771 2842 0.899019 TGGCATCAGCATTGCAACAT 59.101 45.000 11.91 0.00 44.61 2.71 R
3666 3852 1.336755 ACGTTGTGGCAATTCAGGAAC 59.663 47.619 0.00 0.00 0.00 3.62 R
4893 5369 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85 R
5858 6603 0.944386 CCCACCTGTGTTCAAGTTCG 59.056 55.000 0.00 0.00 0.00 3.95 R
6974 7744 0.040499 TTCCCCCACTTACCAATGGC 59.960 55.000 0.00 0.00 34.37 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.738246 CACCTGCTGCTGCTGCTG 61.738 66.667 27.67 25.97 40.48 4.41
82 89 2.827642 GGGGACTGCTGCTGATGC 60.828 66.667 13.69 3.28 40.20 3.91
190 197 2.592993 TTGCGGGGTGGAGAAGAGG 61.593 63.158 0.00 0.00 0.00 3.69
475 483 2.424246 GAGGAGAGAAACCCTAGTGACG 59.576 54.545 0.00 0.00 31.84 4.35
479 487 0.243095 AGAAACCCTAGTGACGCGAC 59.757 55.000 15.93 7.62 0.00 5.19
481 489 2.482296 AAACCCTAGTGACGCGACCG 62.482 60.000 15.93 0.00 41.14 4.79
482 490 3.129502 CCCTAGTGACGCGACCGA 61.130 66.667 15.93 0.00 38.29 4.69
483 491 2.099831 CCTAGTGACGCGACCGAC 59.900 66.667 15.93 1.20 38.29 4.79
484 492 2.396955 CCTAGTGACGCGACCGACT 61.397 63.158 15.93 10.12 38.29 4.18
485 493 1.226046 CTAGTGACGCGACCGACTG 60.226 63.158 15.93 0.00 38.29 3.51
486 494 1.909141 CTAGTGACGCGACCGACTGT 61.909 60.000 15.93 0.00 38.29 3.55
487 495 1.904852 TAGTGACGCGACCGACTGTC 61.905 60.000 15.93 0.00 40.81 3.51
938 951 2.951229 CCCACTTGAGGGTTGTTAGT 57.049 50.000 0.00 0.00 44.24 2.24
940 953 4.360951 CCCACTTGAGGGTTGTTAGTAA 57.639 45.455 0.00 0.00 44.24 2.24
941 954 4.324267 CCCACTTGAGGGTTGTTAGTAAG 58.676 47.826 0.00 0.00 44.24 2.34
942 955 3.751698 CCACTTGAGGGTTGTTAGTAAGC 59.248 47.826 0.00 0.00 0.00 3.09
943 956 3.432252 CACTTGAGGGTTGTTAGTAAGCG 59.568 47.826 0.00 0.00 0.00 4.68
948 961 2.107031 AGGGTTGTTAGTAAGCGGGTTT 59.893 45.455 0.00 0.00 0.00 3.27
949 962 3.327464 AGGGTTGTTAGTAAGCGGGTTTA 59.673 43.478 0.00 0.00 0.00 2.01
950 963 3.436704 GGGTTGTTAGTAAGCGGGTTTAC 59.563 47.826 0.00 0.00 34.48 2.01
951 964 4.064388 GGTTGTTAGTAAGCGGGTTTACA 58.936 43.478 0.00 0.00 36.27 2.41
952 965 4.152938 GGTTGTTAGTAAGCGGGTTTACAG 59.847 45.833 0.00 0.00 36.27 2.74
953 966 4.605640 TGTTAGTAAGCGGGTTTACAGT 57.394 40.909 0.00 0.00 36.27 3.55
954 967 4.309099 TGTTAGTAAGCGGGTTTACAGTG 58.691 43.478 0.00 0.00 36.27 3.66
975 988 0.107268 AAGGCGTAACTGTTTCCGGT 59.893 50.000 0.00 0.00 0.00 5.28
977 990 0.881600 GGCGTAACTGTTTCCGGTGT 60.882 55.000 0.00 0.00 0.00 4.16
978 991 0.509929 GCGTAACTGTTTCCGGTGTC 59.490 55.000 0.00 0.00 0.00 3.67
979 992 1.855513 CGTAACTGTTTCCGGTGTCA 58.144 50.000 0.00 0.00 0.00 3.58
980 993 2.203401 CGTAACTGTTTCCGGTGTCAA 58.797 47.619 0.00 0.00 0.00 3.18
1247 1261 0.444651 CGAGTCTAGATCCGGATCGC 59.555 60.000 33.24 24.46 42.48 4.58
1369 1383 4.445452 TTCACAGTGAAGGTACGGTATC 57.555 45.455 12.24 0.00 31.83 2.24
1382 1396 3.814005 ACGGTATCTAATGACCACCAC 57.186 47.619 0.00 0.00 35.26 4.16
1392 1406 4.431416 AATGACCACCACTAGTGTTTCA 57.569 40.909 21.18 16.21 45.74 2.69
1401 1415 5.696724 CACCACTAGTGTTTCAGAGTAAAGG 59.303 44.000 21.18 3.51 41.93 3.11
1404 1418 6.766467 CCACTAGTGTTTCAGAGTAAAGGTTT 59.234 38.462 21.18 0.00 0.00 3.27
1411 1425 6.094881 TGTTTCAGAGTAAAGGTTTCCTTGTG 59.905 38.462 1.62 0.00 43.92 3.33
1417 1431 2.351706 AAGGTTTCCTTGTGCCGTAA 57.648 45.000 0.00 0.00 42.96 3.18
1425 1439 3.426615 TCCTTGTGCCGTAATGGAATTT 58.573 40.909 0.00 0.00 42.00 1.82
1427 1441 3.192422 CCTTGTGCCGTAATGGAATTTGA 59.808 43.478 0.00 0.00 42.00 2.69
1438 1452 6.465781 CGTAATGGAATTTGACAATTCGACTG 59.534 38.462 0.00 0.00 46.62 3.51
1446 1460 1.464997 GACAATTCGACTGGTTGGAGC 59.535 52.381 0.00 0.00 0.00 4.70
1450 1464 1.334160 TTCGACTGGTTGGAGCACTA 58.666 50.000 0.00 0.00 0.00 2.74
1493 1507 2.834689 GAAATGTACAGTTTCCACGCG 58.165 47.619 10.27 3.53 31.08 6.01
1502 1516 0.096454 GTTTCCACGCGATGCTAACC 59.904 55.000 15.93 0.00 0.00 2.85
1518 1532 1.362224 AACCTGACCATAGTGCCACT 58.638 50.000 1.54 1.54 0.00 4.00
1530 1544 3.912496 AGTGCCACTATGTGCTATGAA 57.088 42.857 0.00 0.00 31.34 2.57
1531 1545 4.428294 AGTGCCACTATGTGCTATGAAT 57.572 40.909 0.00 0.00 31.34 2.57
1532 1546 4.384056 AGTGCCACTATGTGCTATGAATC 58.616 43.478 0.00 0.00 31.34 2.52
1541 1555 7.011202 CACTATGTGCTATGAATCTATGATGCC 59.989 40.741 0.00 0.00 0.00 4.40
1545 1559 3.626670 GCTATGAATCTATGATGCCCAGC 59.373 47.826 0.00 0.00 0.00 4.85
1553 1567 0.549469 ATGATGCCCAGCAGTCATGA 59.451 50.000 11.24 0.00 43.65 3.07
1558 1572 3.084536 TGCCCAGCAGTCATGATTTTA 57.915 42.857 0.00 0.00 33.32 1.52
1569 1588 6.195983 GCAGTCATGATTTTAGCGATTTTCTG 59.804 38.462 0.00 0.00 0.00 3.02
1571 1590 8.390354 CAGTCATGATTTTAGCGATTTTCTGTA 58.610 33.333 0.00 0.00 0.00 2.74
1586 1605 4.799564 TTCTGTATTTGCATTTGGGGTC 57.200 40.909 0.00 0.00 0.00 4.46
1599 1618 0.546747 TGGGGTCAGTTAGGTCCCAG 60.547 60.000 0.00 0.00 42.21 4.45
1622 1641 2.610479 CGCAGGTCTCTCAAAAGCACTA 60.610 50.000 0.00 0.00 0.00 2.74
1681 1700 6.208402 TGCTGACCAAATAAGTTGATGCTTAA 59.792 34.615 0.00 0.00 39.87 1.85
1735 1754 4.891260 TCATCGCTGATTCATTGCTCTAT 58.109 39.130 0.00 0.00 0.00 1.98
1820 1839 8.350722 GTTTTTATATAACTTCTAGGCAAGGGC 58.649 37.037 0.00 0.00 40.13 5.19
1852 1871 6.483640 GGATACTAAAAATCATCGCTGTTCCT 59.516 38.462 0.00 0.00 0.00 3.36
1872 1891 7.549134 TGTTCCTTACTACAGTTGATATTGCTG 59.451 37.037 0.00 0.00 36.41 4.41
1942 1961 9.233232 CTCTTGTTGGTTGTTACTTTTGTTATC 57.767 33.333 0.00 0.00 0.00 1.75
1957 1976 8.241367 ACTTTTGTTATCGATTATTGGTTGACC 58.759 33.333 1.71 0.00 0.00 4.02
1960 1979 5.875910 TGTTATCGATTATTGGTTGACCGTT 59.124 36.000 1.71 0.00 39.43 4.44
1981 2000 5.820947 CGTTGGCTACTTACTGGGATTTATT 59.179 40.000 0.00 0.00 0.00 1.40
1997 2016 8.160106 TGGGATTTATTGGTATGCTTTTGTTTT 58.840 29.630 0.00 0.00 0.00 2.43
2014 2033 7.541122 TTTGTTTTTCTTCGGGTTTTATTGG 57.459 32.000 0.00 0.00 0.00 3.16
2024 2043 3.056891 CGGGTTTTATTGGTGTGCATTCT 60.057 43.478 0.00 0.00 0.00 2.40
2053 2072 9.431887 TGAAGAGCAAAGTAAAATAACTATCGT 57.568 29.630 0.00 0.00 0.00 3.73
2071 2090 4.829872 TCGTGTTTTATATCACCACCCT 57.170 40.909 0.00 0.00 0.00 4.34
2072 2091 4.509616 TCGTGTTTTATATCACCACCCTG 58.490 43.478 0.00 0.00 0.00 4.45
2073 2092 4.223255 TCGTGTTTTATATCACCACCCTGA 59.777 41.667 0.00 0.00 0.00 3.86
2074 2093 4.331717 CGTGTTTTATATCACCACCCTGAC 59.668 45.833 0.00 0.00 0.00 3.51
2076 2095 5.708230 GTGTTTTATATCACCACCCTGACAA 59.292 40.000 0.00 0.00 0.00 3.18
2077 2096 6.377146 GTGTTTTATATCACCACCCTGACAAT 59.623 38.462 0.00 0.00 0.00 2.71
2079 2098 7.554835 TGTTTTATATCACCACCCTGACAATAC 59.445 37.037 0.00 0.00 0.00 1.89
2080 2099 6.816616 TTATATCACCACCCTGACAATACA 57.183 37.500 0.00 0.00 0.00 2.29
2081 2100 5.912149 ATATCACCACCCTGACAATACAT 57.088 39.130 0.00 0.00 0.00 2.29
2083 2102 3.950397 TCACCACCCTGACAATACATTC 58.050 45.455 0.00 0.00 0.00 2.67
2084 2103 3.329225 TCACCACCCTGACAATACATTCA 59.671 43.478 0.00 0.00 0.00 2.57
2086 2105 4.156556 CACCACCCTGACAATACATTCAAG 59.843 45.833 0.00 0.00 0.00 3.02
2087 2106 4.202567 ACCACCCTGACAATACATTCAAGT 60.203 41.667 0.00 0.00 0.00 3.16
2105 2124 9.897744 CATTCAAGTTTTTGAGCACTTAATAGA 57.102 29.630 0.00 0.00 43.76 1.98
2117 2136 9.167311 TGAGCACTTAATAGAGAATTTTCTTCC 57.833 33.333 3.52 0.00 37.73 3.46
2119 2138 9.171877 AGCACTTAATAGAGAATTTTCTTCCTG 57.828 33.333 3.52 0.00 37.73 3.86
2131 2150 5.832539 TTTTCTTCCTGTCTGAATCTCCT 57.167 39.130 0.00 0.00 0.00 3.69
2140 2159 5.392767 TGTCTGAATCTCCTACAGTGTTC 57.607 43.478 0.00 0.00 33.93 3.18
2149 2168 4.021104 TCTCCTACAGTGTTCATTCTGTGG 60.021 45.833 0.00 5.15 43.46 4.17
2152 2171 5.305902 TCCTACAGTGTTCATTCTGTGGTTA 59.694 40.000 0.00 0.00 43.46 2.85
2185 2215 9.801714 GTATTCATGCAATGCTAAATTTTATGC 57.198 29.630 6.82 5.80 46.21 3.14
2186 2216 8.671384 ATTCATGCAATGCTAAATTTTATGCT 57.329 26.923 6.82 0.00 46.21 3.79
2187 2217 7.471657 TCATGCAATGCTAAATTTTATGCTG 57.528 32.000 6.82 8.55 46.21 4.41
2207 2237 7.352079 TGCTGTATTAGACTCATCTCAATCA 57.648 36.000 0.00 0.00 36.29 2.57
2229 2259 6.919721 TCATTTTCCAACATAACTTGTAGGC 58.080 36.000 0.00 0.00 37.68 3.93
2231 2261 7.885922 TCATTTTCCAACATAACTTGTAGGCTA 59.114 33.333 0.00 0.00 37.68 3.93
2240 2270 9.547753 AACATAACTTGTAGGCTATATCAGTTG 57.452 33.333 14.85 6.14 37.68 3.16
2246 2276 8.580720 ACTTGTAGGCTATATCAGTTGATGTAG 58.419 37.037 16.89 16.89 44.25 2.74
2265 2295 2.703190 GCAGTCGCTTAGTTTGATCG 57.297 50.000 0.00 0.00 34.30 3.69
2266 2296 2.259618 GCAGTCGCTTAGTTTGATCGA 58.740 47.619 0.00 0.00 34.30 3.59
2281 2312 8.142994 AGTTTGATCGATGTTATGATGTAACC 57.857 34.615 0.54 0.00 0.00 2.85
2293 2324 7.608761 TGTTATGATGTAACCTTTGTACCCTTC 59.391 37.037 0.00 0.00 0.00 3.46
2294 2325 5.570205 TGATGTAACCTTTGTACCCTTCA 57.430 39.130 0.00 0.00 0.00 3.02
2295 2326 5.942961 TGATGTAACCTTTGTACCCTTCAA 58.057 37.500 0.00 0.00 0.00 2.69
2298 2329 5.757988 TGTAACCTTTGTACCCTTCAACTT 58.242 37.500 0.00 0.00 0.00 2.66
2300 2331 5.592104 AACCTTTGTACCCTTCAACTTTG 57.408 39.130 0.00 0.00 0.00 2.77
2302 2333 4.643334 ACCTTTGTACCCTTCAACTTTGTC 59.357 41.667 0.00 0.00 0.00 3.18
2305 2336 3.815809 TGTACCCTTCAACTTTGTCCTG 58.184 45.455 0.00 0.00 0.00 3.86
2306 2337 1.692411 ACCCTTCAACTTTGTCCTGC 58.308 50.000 0.00 0.00 0.00 4.85
2307 2338 1.064017 ACCCTTCAACTTTGTCCTGCA 60.064 47.619 0.00 0.00 0.00 4.41
2308 2339 2.242043 CCCTTCAACTTTGTCCTGCAT 58.758 47.619 0.00 0.00 0.00 3.96
2309 2340 3.181434 ACCCTTCAACTTTGTCCTGCATA 60.181 43.478 0.00 0.00 0.00 3.14
2310 2341 3.191371 CCCTTCAACTTTGTCCTGCATAC 59.809 47.826 0.00 0.00 0.00 2.39
2322 2353 4.956075 TGTCCTGCATACTGAATCTGTCTA 59.044 41.667 0.00 0.00 0.00 2.59
2325 2356 7.287696 TGTCCTGCATACTGAATCTGTCTATTA 59.712 37.037 0.00 0.00 0.00 0.98
2326 2357 7.812191 GTCCTGCATACTGAATCTGTCTATTAG 59.188 40.741 0.00 0.00 0.00 1.73
2382 2413 2.503356 ACCCATCCAAGTTTGCAAAACA 59.497 40.909 14.67 0.00 0.00 2.83
2418 2449 7.394641 CCATGAGATTAGTAGCACCAGACTATA 59.605 40.741 0.00 0.00 0.00 1.31
2516 2584 3.193691 AGATCACTCACTGTTTCCTACCG 59.806 47.826 0.00 0.00 0.00 4.02
2517 2585 1.616865 TCACTCACTGTTTCCTACCGG 59.383 52.381 0.00 0.00 0.00 5.28
2533 2601 1.333636 CCGGAGCACTGAGGAGGAAT 61.334 60.000 0.00 0.00 0.00 3.01
2537 2605 3.574396 CGGAGCACTGAGGAGGAATATAA 59.426 47.826 0.00 0.00 0.00 0.98
2539 2607 4.591072 GGAGCACTGAGGAGGAATATAAGT 59.409 45.833 0.00 0.00 0.00 2.24
2546 2614 7.601886 CACTGAGGAGGAATATAAGTTATGCAG 59.398 40.741 5.61 0.00 0.00 4.41
2557 2625 3.131709 AGTTATGCAGCAAGTGTCAGT 57.868 42.857 0.00 0.00 0.00 3.41
2558 2626 3.480470 AGTTATGCAGCAAGTGTCAGTT 58.520 40.909 0.00 0.00 0.00 3.16
2559 2627 3.251729 AGTTATGCAGCAAGTGTCAGTTG 59.748 43.478 14.98 14.98 0.00 3.16
2641 2711 6.701340 AGCATAACATCGAGGCATAGAAATA 58.299 36.000 0.00 0.00 0.00 1.40
2654 2724 7.013220 AGGCATAGAAATAGTACTCCTGATCA 58.987 38.462 0.00 0.00 0.00 2.92
2679 2749 2.440627 TCATATTCTGCAGGCAGGATGT 59.559 45.455 22.37 14.60 41.95 3.06
2690 2760 3.256383 CAGGCAGGATGTGAACAATTTGA 59.744 43.478 2.79 0.00 39.31 2.69
2726 2796 0.679002 CATGGCAAGACACTCCCAGG 60.679 60.000 0.00 0.00 0.00 4.45
2739 2810 2.515523 CCAGGCCAGCAAGATCCG 60.516 66.667 5.01 0.00 0.00 4.18
2753 2824 2.315176 AGATCCGCATTGACTAGCTCT 58.685 47.619 0.00 0.00 0.00 4.09
2763 2834 6.222389 GCATTGACTAGCTCTGATATGAGTT 58.778 40.000 0.00 0.00 36.51 3.01
2770 2841 8.343168 ACTAGCTCTGATATGAGTTACATACC 57.657 38.462 0.00 0.00 43.12 2.73
2771 2842 7.945109 ACTAGCTCTGATATGAGTTACATACCA 59.055 37.037 0.00 0.00 43.12 3.25
2775 2846 7.875041 GCTCTGATATGAGTTACATACCATGTT 59.125 37.037 0.00 0.00 43.12 2.71
2786 2857 3.702548 ACATACCATGTTGCAATGCTGAT 59.297 39.130 6.82 0.00 41.63 2.90
2805 2876 2.571757 CCAGTGGCATTGCAGCAG 59.428 61.111 11.39 0.00 35.83 4.24
2806 2877 2.273179 CCAGTGGCATTGCAGCAGT 61.273 57.895 11.39 0.15 35.83 4.40
2813 2884 1.159285 GCATTGCAGCAGTCACTACA 58.841 50.000 3.15 0.00 0.00 2.74
2820 2891 0.246086 AGCAGTCACTACAGCAGAGC 59.754 55.000 0.00 0.00 40.38 4.09
2822 2893 1.405256 GCAGTCACTACAGCAGAGCAT 60.405 52.381 0.00 0.00 37.99 3.79
2832 2903 3.947868 ACAGCAGAGCATCAAGTGTATT 58.052 40.909 0.00 0.00 37.82 1.89
2842 2913 6.208644 AGCATCAAGTGTATTTTTGTGTGTC 58.791 36.000 0.00 0.00 0.00 3.67
2854 2925 4.829064 TTTGTGTGTCAAGTTATGAGCC 57.171 40.909 0.00 0.00 39.19 4.70
2873 2944 7.163001 TGAGCCATTATGCTAGTCATAGTAG 57.837 40.000 6.87 0.00 42.95 2.57
2929 3108 0.037590 TATGGGGCACACTGGTTGTC 59.962 55.000 0.00 0.00 35.67 3.18
2931 3110 2.110213 GGGCACACTGGTTGTCGA 59.890 61.111 0.00 0.00 35.67 4.20
2950 3129 2.419297 CGATTGCCTACTTGCTCCTCTT 60.419 50.000 0.00 0.00 0.00 2.85
2967 3146 8.497745 TGCTCCTCTTAGATTTCCTGATTTATT 58.502 33.333 0.00 0.00 0.00 1.40
3033 3212 8.868522 TTCAAATCATACCATGAATCCTATCC 57.131 34.615 0.00 0.00 43.50 2.59
3055 3234 4.976116 CCGAAGTTTTTCTTGGCAGTAAAG 59.024 41.667 0.00 0.00 36.40 1.85
3108 3287 6.349973 TGCTAATCTAAACTGCTTCATTCG 57.650 37.500 0.00 0.00 0.00 3.34
3195 3374 3.008049 CCACCTTATGATGGCCTAGGTAC 59.992 52.174 11.31 4.59 37.12 3.34
3207 3386 6.047511 TGGCCTAGGTACGTTTTACAATTA 57.952 37.500 11.31 0.00 0.00 1.40
3239 3418 9.685276 TGAGTCATTTAATCATGGAAGTTATGT 57.315 29.630 0.00 0.00 0.00 2.29
3265 3444 3.449377 GTGTTGTCCCCCTCAAAAGAAAA 59.551 43.478 0.00 0.00 0.00 2.29
3266 3445 3.704061 TGTTGTCCCCCTCAAAAGAAAAG 59.296 43.478 0.00 0.00 0.00 2.27
3304 3483 5.870978 GTCGGCAAACTGTATTCCTAAAGTA 59.129 40.000 0.00 0.00 0.00 2.24
3366 3546 4.036616 TGCACCATTGATGTGATTATTCCG 59.963 41.667 0.00 0.00 0.00 4.30
3378 3558 5.584649 TGTGATTATTCCGCTTCTTGGTAAG 59.415 40.000 0.00 0.00 0.00 2.34
3391 3571 7.686938 CGCTTCTTGGTAAGTAAACTTTAATCG 59.313 37.037 0.00 0.00 37.40 3.34
3396 3576 8.556213 TTGGTAAGTAAACTTTAATCGATGCT 57.444 30.769 0.00 0.00 37.40 3.79
3405 3585 6.604735 ACTTTAATCGATGCTTACCATGTC 57.395 37.500 0.00 0.00 33.29 3.06
3409 3589 1.768275 TCGATGCTTACCATGTCCCAT 59.232 47.619 0.00 0.00 33.29 4.00
3412 3592 3.748048 CGATGCTTACCATGTCCCATTAG 59.252 47.826 0.00 0.00 33.29 1.73
3413 3593 2.930950 TGCTTACCATGTCCCATTAGC 58.069 47.619 0.00 0.00 0.00 3.09
3414 3594 2.509548 TGCTTACCATGTCCCATTAGCT 59.490 45.455 0.00 0.00 0.00 3.32
3415 3595 3.714280 TGCTTACCATGTCCCATTAGCTA 59.286 43.478 0.00 0.00 0.00 3.32
3456 3641 5.622460 CGGTTCTGTCAGGTATATCCTATGC 60.622 48.000 0.00 0.00 46.24 3.14
3518 3704 3.951680 TGTCATAGCTAACGAGTGGATGA 59.048 43.478 0.00 0.00 0.00 2.92
3521 3707 4.645136 TCATAGCTAACGAGTGGATGACTT 59.355 41.667 0.00 0.00 33.83 3.01
3522 3708 3.238108 AGCTAACGAGTGGATGACTTG 57.762 47.619 0.00 0.00 41.48 3.16
3529 3715 3.006859 ACGAGTGGATGACTTGTGATTGA 59.993 43.478 0.00 0.00 46.21 2.57
3543 3729 4.136796 TGTGATTGAGTTTTGAGACCAGG 58.863 43.478 0.00 0.00 0.00 4.45
3552 3738 1.971149 TTGAGACCAGGGGATGACAT 58.029 50.000 0.00 0.00 0.00 3.06
3623 3809 1.518367 AGACAGGAGTTTGGAACCCA 58.482 50.000 0.00 0.00 0.00 4.51
3644 3830 6.716934 CCAGAATCACACTGGTATACTAGT 57.283 41.667 15.56 15.56 46.71 2.57
3651 3837 7.949690 TCACACTGGTATACTAGTACATGTT 57.050 36.000 20.13 0.00 35.39 2.71
3658 3844 9.298250 CTGGTATACTAGTACATGTTGTAGGAT 57.702 37.037 2.30 10.09 32.84 3.24
3665 3851 5.034200 AGTACATGTTGTAGGATAACCCCA 58.966 41.667 2.30 0.00 32.84 4.96
3666 3852 4.503714 ACATGTTGTAGGATAACCCCAG 57.496 45.455 0.00 0.00 36.73 4.45
3669 3855 4.563140 TGTTGTAGGATAACCCCAGTTC 57.437 45.455 0.00 0.00 37.42 3.01
3697 3887 3.773117 CACAACGTGGGCATTCTTC 57.227 52.632 0.00 0.00 0.00 2.87
3710 3900 4.271291 GGGCATTCTTCTTACTTCTTAGCG 59.729 45.833 0.00 0.00 0.00 4.26
3713 3903 6.037098 GCATTCTTCTTACTTCTTAGCGAGA 58.963 40.000 0.00 0.00 0.00 4.04
3736 4009 4.707030 TTATTGCAGCTGGAATTGTGAG 57.293 40.909 34.11 0.00 37.30 3.51
3737 4010 1.250328 TTGCAGCTGGAATTGTGAGG 58.750 50.000 17.55 0.00 0.00 3.86
3784 4057 7.410120 AGGCCTTAATCTGAAATTGGTAAAG 57.590 36.000 0.00 0.00 0.00 1.85
3787 4060 7.035612 GCCTTAATCTGAAATTGGTAAAGTGG 58.964 38.462 0.00 0.00 0.00 4.00
3840 4113 6.127196 GGATTACCAATATTGCAAACCTGGAA 60.127 38.462 23.45 15.67 35.23 3.53
3868 4141 1.593196 TGACAGAAGGTTTTGAGCCG 58.407 50.000 0.00 0.00 0.00 5.52
3880 4153 3.565764 TTTGAGCCGGATCAAGATCAT 57.434 42.857 31.60 0.00 40.16 2.45
3944 4217 9.997482 TTAACAATTTCGATCCTTTTACTATGC 57.003 29.630 0.00 0.00 0.00 3.14
3946 4219 6.315393 ACAATTTCGATCCTTTTACTATGCGT 59.685 34.615 0.00 0.00 0.00 5.24
3947 4220 5.712217 TTTCGATCCTTTTACTATGCGTG 57.288 39.130 0.00 0.00 0.00 5.34
3953 4226 5.002464 TCCTTTTACTATGCGTGAGTACC 57.998 43.478 0.00 0.00 0.00 3.34
3980 4255 3.659841 TCCTTAGGCACACCCATATGTA 58.340 45.455 1.24 0.00 36.11 2.29
3981 4256 3.389983 TCCTTAGGCACACCCATATGTAC 59.610 47.826 1.24 0.00 36.11 2.90
3998 4273 9.248291 CCATATGTACATCCAATTGCTAAAAAC 57.752 33.333 12.68 0.00 0.00 2.43
4002 4277 4.555262 ACATCCAATTGCTAAAAACGTGG 58.445 39.130 0.00 0.00 0.00 4.94
4118 4393 6.365970 ACATCACCACACTTCTCTCTTAAT 57.634 37.500 0.00 0.00 0.00 1.40
4347 4646 4.156477 GCCTTCAGTGAGTAGGATCCTAT 58.844 47.826 24.31 13.19 36.96 2.57
4348 4647 4.591072 GCCTTCAGTGAGTAGGATCCTATT 59.409 45.833 24.31 20.27 36.96 1.73
4353 4652 6.673583 TCAGTGAGTAGGATCCTATTCAGAA 58.326 40.000 35.14 24.13 42.92 3.02
4461 4760 3.578282 TGTCATGCCTGAACTCTCTAACA 59.422 43.478 0.00 0.00 31.85 2.41
4469 4768 6.166982 GCCTGAACTCTCTAACATGTAAGTT 58.833 40.000 0.00 4.60 35.55 2.66
4522 4821 3.976793 TTTTTGCACTTCTGAGCTCTG 57.023 42.857 16.19 15.06 0.00 3.35
4534 4841 7.332926 CACTTCTGAGCTCTGTATTTGTACAAT 59.667 37.037 16.19 2.67 0.00 2.71
4541 4848 8.934507 AGCTCTGTATTTGTACAATAAGTCTC 57.065 34.615 9.56 0.00 0.00 3.36
4571 4878 6.864342 TCTCCAGTAAAATAGACTCTTTCCG 58.136 40.000 0.00 0.00 0.00 4.30
4587 4894 8.425577 ACTCTTTCCGTCATTATATTTGACAG 57.574 34.615 15.02 7.12 42.90 3.51
4592 4899 6.781138 TCCGTCATTATATTTGACAGTTTGC 58.219 36.000 15.02 0.00 42.90 3.68
4609 4916 9.760660 GACAGTTTGCAGTAATTTACAATCTAG 57.239 33.333 9.15 0.00 0.00 2.43
4654 5129 4.583871 CTGGGCATTACTTGAGAGAGTTT 58.416 43.478 0.00 0.00 0.00 2.66
4718 5193 1.956629 GCTTTGCAGCCTCATGCCAT 61.957 55.000 0.00 0.00 45.91 4.40
4721 5196 0.248012 TTGCAGCCTCATGCCATTTG 59.752 50.000 0.00 0.00 45.91 2.32
4805 5280 6.532365 GCTATTTTACTGATTAGCGAGCTT 57.468 37.500 1.86 0.00 0.00 3.74
4808 5283 8.165428 GCTATTTTACTGATTAGCGAGCTTATG 58.835 37.037 1.86 0.00 0.00 1.90
4814 5289 5.874810 ACTGATTAGCGAGCTTATGTTTTCA 59.125 36.000 1.86 0.00 0.00 2.69
4889 5365 7.201644 GCTTTAGCTTGTTCTGAGCACAATATA 60.202 37.037 0.00 0.00 42.56 0.86
4890 5366 8.560355 TTTAGCTTGTTCTGAGCACAATATAA 57.440 30.769 0.00 0.00 42.56 0.98
4891 5367 6.674694 AGCTTGTTCTGAGCACAATATAAG 57.325 37.500 0.00 0.00 42.56 1.73
4892 5368 6.176183 AGCTTGTTCTGAGCACAATATAAGT 58.824 36.000 0.00 0.00 42.56 2.24
4893 5369 7.331026 AGCTTGTTCTGAGCACAATATAAGTA 58.669 34.615 0.00 0.00 42.56 2.24
4894 5370 7.278868 AGCTTGTTCTGAGCACAATATAAGTAC 59.721 37.037 0.00 0.00 42.56 2.73
4895 5371 7.278868 GCTTGTTCTGAGCACAATATAAGTACT 59.721 37.037 0.00 0.00 39.89 2.73
4896 5372 8.703604 TTGTTCTGAGCACAATATAAGTACTC 57.296 34.615 0.00 2.85 31.47 2.59
4897 5373 7.265673 TGTTCTGAGCACAATATAAGTACTCC 58.734 38.462 0.00 0.00 30.06 3.85
4898 5374 6.406692 TCTGAGCACAATATAAGTACTCCC 57.593 41.667 0.00 0.00 30.06 4.30
4899 5375 6.136857 TCTGAGCACAATATAAGTACTCCCT 58.863 40.000 0.00 0.00 30.06 4.20
4900 5376 6.265649 TCTGAGCACAATATAAGTACTCCCTC 59.734 42.308 0.00 0.00 30.06 4.30
4901 5377 5.304614 TGAGCACAATATAAGTACTCCCTCC 59.695 44.000 0.00 0.00 30.06 4.30
4902 5378 4.281182 AGCACAATATAAGTACTCCCTCCG 59.719 45.833 0.00 0.00 0.00 4.63
4903 5379 4.038883 GCACAATATAAGTACTCCCTCCGT 59.961 45.833 0.00 0.00 0.00 4.69
4904 5380 5.452917 GCACAATATAAGTACTCCCTCCGTT 60.453 44.000 0.00 0.00 0.00 4.44
4905 5381 6.214399 CACAATATAAGTACTCCCTCCGTTC 58.786 44.000 0.00 0.00 0.00 3.95
4906 5382 5.895534 ACAATATAAGTACTCCCTCCGTTCA 59.104 40.000 0.00 0.00 0.00 3.18
4907 5383 6.183360 ACAATATAAGTACTCCCTCCGTTCAC 60.183 42.308 0.00 0.00 0.00 3.18
4908 5384 2.305858 AAGTACTCCCTCCGTTCACT 57.694 50.000 0.00 0.00 0.00 3.41
4909 5385 2.305858 AGTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
4910 5386 2.606378 AGTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
4911 5387 2.970640 AGTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
4912 5388 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
4913 5389 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
4914 5390 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
4915 5391 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
4916 5392 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
4917 5393 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
4918 5394 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
4919 5395 4.124238 CCTCCGTTCACTTTTGTAAGTCA 58.876 43.478 0.00 0.00 42.67 3.41
4920 5396 4.755123 CCTCCGTTCACTTTTGTAAGTCAT 59.245 41.667 0.00 0.00 42.67 3.06
4921 5397 5.238650 CCTCCGTTCACTTTTGTAAGTCATT 59.761 40.000 0.00 0.00 42.67 2.57
4922 5398 6.238648 CCTCCGTTCACTTTTGTAAGTCATTT 60.239 38.462 0.00 0.00 42.67 2.32
4923 5399 6.721321 TCCGTTCACTTTTGTAAGTCATTTC 58.279 36.000 0.00 0.00 42.67 2.17
4924 5400 6.316640 TCCGTTCACTTTTGTAAGTCATTTCA 59.683 34.615 0.00 0.00 42.67 2.69
4925 5401 6.632834 CCGTTCACTTTTGTAAGTCATTTCAG 59.367 38.462 0.00 0.00 42.67 3.02
4926 5402 7.406553 CGTTCACTTTTGTAAGTCATTTCAGA 58.593 34.615 0.00 0.00 42.67 3.27
4927 5403 7.908082 CGTTCACTTTTGTAAGTCATTTCAGAA 59.092 33.333 0.00 0.00 42.67 3.02
4928 5404 9.567848 GTTCACTTTTGTAAGTCATTTCAGAAA 57.432 29.630 0.00 0.00 42.67 2.52
4930 5406 9.567848 TCACTTTTGTAAGTCATTTCAGAAAAC 57.432 29.630 0.00 0.00 42.67 2.43
4931 5407 9.573133 CACTTTTGTAAGTCATTTCAGAAAACT 57.427 29.630 0.00 0.00 42.67 2.66
4932 5408 9.788960 ACTTTTGTAAGTCATTTCAGAAAACTC 57.211 29.630 0.00 0.00 40.60 3.01
4933 5409 9.787532 CTTTTGTAAGTCATTTCAGAAAACTCA 57.212 29.630 0.00 0.00 0.00 3.41
4939 5415 8.652810 AAGTCATTTCAGAAAACTCAAAATGG 57.347 30.769 0.00 0.00 37.71 3.16
4940 5416 6.703165 AGTCATTTCAGAAAACTCAAAATGGC 59.297 34.615 0.00 0.00 40.47 4.40
4941 5417 6.703165 GTCATTTCAGAAAACTCAAAATGGCT 59.297 34.615 0.00 0.00 38.34 4.75
4942 5418 6.702723 TCATTTCAGAAAACTCAAAATGGCTG 59.297 34.615 0.00 0.00 37.71 4.85
4943 5419 5.596836 TTCAGAAAACTCAAAATGGCTGT 57.403 34.783 0.00 0.00 0.00 4.40
4944 5420 5.596836 TCAGAAAACTCAAAATGGCTGTT 57.403 34.783 0.00 0.00 0.00 3.16
4945 5421 5.976458 TCAGAAAACTCAAAATGGCTGTTT 58.024 33.333 0.00 0.00 33.04 2.83
4946 5422 6.405538 TCAGAAAACTCAAAATGGCTGTTTT 58.594 32.000 0.00 0.00 41.56 2.43
4947 5423 6.313411 TCAGAAAACTCAAAATGGCTGTTTTG 59.687 34.615 17.02 17.02 45.76 2.44
4948 5424 6.092533 CAGAAAACTCAAAATGGCTGTTTTGT 59.907 34.615 20.15 1.12 45.04 2.83
4949 5425 7.277539 CAGAAAACTCAAAATGGCTGTTTTGTA 59.722 33.333 20.15 11.32 45.04 2.41
4950 5426 6.902224 AAACTCAAAATGGCTGTTTTGTAC 57.098 33.333 20.15 0.00 45.04 2.90
4951 5427 5.590530 ACTCAAAATGGCTGTTTTGTACA 57.409 34.783 20.15 0.00 45.04 2.90
4952 5428 6.160576 ACTCAAAATGGCTGTTTTGTACAT 57.839 33.333 20.15 8.48 45.04 2.29
4953 5429 6.581712 ACTCAAAATGGCTGTTTTGTACATT 58.418 32.000 20.15 0.00 45.04 2.71
4954 5430 6.479660 ACTCAAAATGGCTGTTTTGTACATTG 59.520 34.615 20.15 0.00 45.04 2.82
4955 5431 6.344500 TCAAAATGGCTGTTTTGTACATTGT 58.656 32.000 20.15 0.00 45.04 2.71
4956 5432 6.478344 TCAAAATGGCTGTTTTGTACATTGTC 59.522 34.615 20.15 0.00 45.04 3.18
4957 5433 5.789643 AATGGCTGTTTTGTACATTGTCT 57.210 34.783 0.00 0.00 35.85 3.41
4958 5434 4.566545 TGGCTGTTTTGTACATTGTCTG 57.433 40.909 0.00 0.00 35.85 3.51
4959 5435 4.203226 TGGCTGTTTTGTACATTGTCTGA 58.797 39.130 0.00 0.00 35.85 3.27
4960 5436 4.642437 TGGCTGTTTTGTACATTGTCTGAA 59.358 37.500 0.00 0.00 35.85 3.02
4961 5437 5.126222 TGGCTGTTTTGTACATTGTCTGAAA 59.874 36.000 0.00 0.00 35.85 2.69
4962 5438 6.183360 TGGCTGTTTTGTACATTGTCTGAAAT 60.183 34.615 0.00 0.00 35.85 2.17
4963 5439 6.144402 GGCTGTTTTGTACATTGTCTGAAATG 59.856 38.462 0.00 9.50 42.21 2.32
4965 5441 7.096477 GCTGTTTTGTACATTGTCTGAAATGTC 60.096 37.037 16.13 11.24 45.47 3.06
4966 5442 7.995289 TGTTTTGTACATTGTCTGAAATGTCT 58.005 30.769 16.13 3.09 45.47 3.41
4967 5443 8.465999 TGTTTTGTACATTGTCTGAAATGTCTT 58.534 29.630 16.13 2.61 45.47 3.01
4968 5444 8.958043 GTTTTGTACATTGTCTGAAATGTCTTC 58.042 33.333 16.13 11.26 45.47 2.87
4969 5445 7.800155 TTGTACATTGTCTGAAATGTCTTCA 57.200 32.000 16.13 12.76 45.47 3.02
4970 5446 7.800155 TGTACATTGTCTGAAATGTCTTCAA 57.200 32.000 16.13 0.18 45.47 2.69
4971 5447 7.864686 TGTACATTGTCTGAAATGTCTTCAAG 58.135 34.615 16.13 0.00 45.47 3.02
4972 5448 6.323203 ACATTGTCTGAAATGTCTTCAAGG 57.677 37.500 10.41 0.00 45.47 3.61
4973 5449 5.829924 ACATTGTCTGAAATGTCTTCAAGGT 59.170 36.000 10.41 0.00 45.47 3.50
4974 5450 6.016777 ACATTGTCTGAAATGTCTTCAAGGTC 60.017 38.462 10.41 0.00 45.47 3.85
4975 5451 5.296151 TGTCTGAAATGTCTTCAAGGTCT 57.704 39.130 0.00 0.00 0.00 3.85
4976 5452 5.684704 TGTCTGAAATGTCTTCAAGGTCTT 58.315 37.500 0.00 0.00 0.00 3.01
4977 5453 6.826668 TGTCTGAAATGTCTTCAAGGTCTTA 58.173 36.000 0.00 0.00 0.00 2.10
4978 5454 7.453393 TGTCTGAAATGTCTTCAAGGTCTTAT 58.547 34.615 0.00 0.00 0.00 1.73
4979 5455 8.593679 TGTCTGAAATGTCTTCAAGGTCTTATA 58.406 33.333 0.00 0.00 0.00 0.98
4980 5456 9.436957 GTCTGAAATGTCTTCAAGGTCTTATAA 57.563 33.333 0.00 0.00 0.00 0.98
4986 5462 9.793259 AATGTCTTCAAGGTCTTATAAAAGTGA 57.207 29.630 0.00 0.00 34.13 3.41
4987 5463 9.793259 ATGTCTTCAAGGTCTTATAAAAGTGAA 57.207 29.630 0.00 0.00 34.13 3.18
4988 5464 9.052759 TGTCTTCAAGGTCTTATAAAAGTGAAC 57.947 33.333 0.00 0.00 34.13 3.18
4989 5465 9.052759 GTCTTCAAGGTCTTATAAAAGTGAACA 57.947 33.333 0.00 0.00 34.13 3.18
4990 5466 9.273016 TCTTCAAGGTCTTATAAAAGTGAACAG 57.727 33.333 0.00 0.00 34.13 3.16
4991 5467 9.273016 CTTCAAGGTCTTATAAAAGTGAACAGA 57.727 33.333 0.00 0.00 34.13 3.41
4992 5468 8.833231 TCAAGGTCTTATAAAAGTGAACAGAG 57.167 34.615 0.00 0.00 34.13 3.35
4993 5469 7.878127 TCAAGGTCTTATAAAAGTGAACAGAGG 59.122 37.037 0.00 0.00 34.13 3.69
4994 5470 6.712276 AGGTCTTATAAAAGTGAACAGAGGG 58.288 40.000 0.00 0.00 34.13 4.30
5000 5476 6.936968 ATAAAAGTGAACAGAGGGAGTAGT 57.063 37.500 0.00 0.00 0.00 2.73
5007 5483 6.070710 AGTGAACAGAGGGAGTAGTATTTTCC 60.071 42.308 0.00 0.00 0.00 3.13
5008 5484 5.783360 TGAACAGAGGGAGTAGTATTTTCCA 59.217 40.000 0.00 0.00 32.50 3.53
5036 5512 5.089970 TGGATCACGTTCTGATGATTCTT 57.910 39.130 0.00 0.00 39.96 2.52
5143 5627 9.362151 GAATATCCATGTGGGGTAAATCTTTAA 57.638 33.333 0.00 0.00 35.35 1.52
5171 5655 5.259632 ACTTCTGCCATCTATGCTCTTTTT 58.740 37.500 0.00 0.00 0.00 1.94
5203 5687 4.104086 TGGATGGTCTACATTTCAGTCCT 58.896 43.478 0.00 0.00 40.72 3.85
5212 5696 7.595502 GGTCTACATTTCAGTCCTACATAATCG 59.404 40.741 0.00 0.00 0.00 3.34
5248 5732 4.005650 TGGATCTTGTTCAGAATGTGCTC 58.994 43.478 0.00 0.00 37.40 4.26
5335 5821 1.873698 TACTGTTTGACAAGGCGACC 58.126 50.000 0.00 0.00 0.00 4.79
5359 5845 0.038166 TTGCTCGGCTCCCAGAAATT 59.962 50.000 0.00 0.00 0.00 1.82
5403 5889 4.555906 CGTGCCAAAAGTTACCAAGGTTAG 60.556 45.833 0.00 0.00 0.00 2.34
5456 5942 9.942850 TGACTTATGACTGAAATAAGTTCATCA 57.057 29.630 15.62 9.63 46.10 3.07
5477 5963 1.621814 TCTCCCCCTTTTCGTGTACAG 59.378 52.381 0.00 0.00 0.00 2.74
5546 6208 9.107177 CTGTCTTGTAGCAAGAGAATCAATAAT 57.893 33.333 11.32 0.00 37.82 1.28
5547 6209 8.886719 TGTCTTGTAGCAAGAGAATCAATAATG 58.113 33.333 11.32 0.00 37.82 1.90
5552 6215 9.013229 TGTAGCAAGAGAATCAATAATGTTGTT 57.987 29.630 0.00 0.00 37.82 2.83
5574 6237 8.335532 TGTTATTTTCACAACTGGAGGAATAG 57.664 34.615 0.00 0.00 0.00 1.73
5577 6240 2.265367 TCACAACTGGAGGAATAGCCA 58.735 47.619 0.00 0.00 40.02 4.75
5644 6307 9.899226 GACATTAAGAATTAGGAATATGGTTGC 57.101 33.333 0.00 0.00 0.00 4.17
5679 6342 9.810545 AAGAGCTTCATTATTCTACTTCTGTAC 57.189 33.333 0.00 0.00 0.00 2.90
5719 6382 3.257375 GGTTATTCCAGTTGTGGGAAACC 59.743 47.826 0.00 0.00 46.76 3.27
5796 6460 2.036571 GGGTGGCGGACCTAAAACG 61.037 63.158 3.71 0.00 45.33 3.60
5806 6470 2.418334 GGACCTAAAACGAGGCCTACAG 60.418 54.545 4.42 2.40 40.65 2.74
5808 6472 3.105283 ACCTAAAACGAGGCCTACAGAT 58.895 45.455 4.42 0.00 40.65 2.90
5858 6603 3.334054 AGCTTCCTGCCTGGTCCC 61.334 66.667 0.00 0.00 44.23 4.46
5880 6625 0.258774 ACTTGAACACAGGTGGGCTT 59.741 50.000 4.24 0.00 34.19 4.35
5882 6627 1.391157 TTGAACACAGGTGGGCTTGC 61.391 55.000 4.24 0.00 34.19 4.01
5883 6628 1.827789 GAACACAGGTGGGCTTGCA 60.828 57.895 4.24 0.00 34.19 4.08
5884 6629 1.152483 AACACAGGTGGGCTTGCAT 60.152 52.632 4.24 0.00 34.19 3.96
5885 6630 1.466025 AACACAGGTGGGCTTGCATG 61.466 55.000 4.24 0.00 34.19 4.06
5886 6631 1.904865 CACAGGTGGGCTTGCATGT 60.905 57.895 1.14 0.00 0.00 3.21
5893 6639 0.673333 TGGGCTTGCATGTACTCACG 60.673 55.000 1.14 0.00 0.00 4.35
5899 6645 0.389817 TGCATGTACTCACGCACCTC 60.390 55.000 0.00 0.00 37.85 3.85
5903 6649 1.801913 GTACTCACGCACCTCGCTG 60.802 63.158 0.00 0.00 43.23 5.18
5978 6724 5.300752 AGTGAAATAGTTGAGATATGGCCG 58.699 41.667 0.00 0.00 0.00 6.13
6010 6757 5.108187 AGCTGTGAAACCTGATGATATGT 57.892 39.130 0.00 0.00 34.36 2.29
6032 6787 3.747099 GTGCAATATGACACCACAGTC 57.253 47.619 0.00 0.00 38.99 3.51
6033 6788 3.338249 GTGCAATATGACACCACAGTCT 58.662 45.455 0.00 0.00 39.27 3.24
6058 6813 6.038492 TCCTTTCGTTTTAGTTCCGACAAAAT 59.962 34.615 0.00 0.00 0.00 1.82
6070 6826 1.334869 CGACAAAATATCAGGGCTGGC 59.665 52.381 0.00 0.00 0.00 4.85
6107 6863 4.439289 GCCTCAATCAAAGCACTGATTACC 60.439 45.833 11.62 0.64 42.79 2.85
6114 6870 3.895232 AAGCACTGATTACCGAGATGT 57.105 42.857 0.00 0.00 0.00 3.06
6133 6890 4.852134 TGTTAACACATCAAAGCTGCAT 57.148 36.364 3.59 0.00 0.00 3.96
6194 6951 5.172205 GTCTTCCTCACTGACCTTATTGTC 58.828 45.833 0.00 0.00 35.77 3.18
6228 6985 9.736414 ACTATATCAAGCATTAATGATGAGCTT 57.264 29.630 19.73 11.40 45.54 3.74
6261 7018 5.045213 TGGTATTGCTTTTGGGAGAGATGTA 60.045 40.000 0.00 0.00 0.00 2.29
6331 7088 2.095364 CAGCACTTTGATCTTGACAGGC 60.095 50.000 0.00 0.00 0.00 4.85
6351 7108 3.265791 GCGACTGATTGAATTCCTGTCT 58.734 45.455 2.27 0.00 0.00 3.41
6374 7131 4.097418 ACCTAGTTGTAAGTCAGCCAGAT 58.903 43.478 0.00 0.00 0.00 2.90
6467 7224 2.505407 TCCATTGTCTATCCCAGGTGTG 59.495 50.000 0.00 0.00 0.00 3.82
6493 7250 2.920724 TGAAGGTGACAATTCGGACA 57.079 45.000 0.00 0.00 0.00 4.02
6534 7291 3.394674 TGTGTGGAAGCGATTACTTCA 57.605 42.857 0.00 0.00 46.48 3.02
6540 7297 2.289565 GAAGCGATTACTTCAAGGGGG 58.710 52.381 0.00 0.00 44.50 5.40
6579 7339 0.322098 ATTCGATGGGTTTGGTCGCA 60.322 50.000 0.00 0.00 35.48 5.10
6633 7393 4.342772 GCGACAAATATGTTTTCGCATCT 58.657 39.130 24.65 0.00 44.13 2.90
6634 7394 4.793216 GCGACAAATATGTTTTCGCATCTT 59.207 37.500 24.65 0.00 44.13 2.40
6635 7395 5.963004 GCGACAAATATGTTTTCGCATCTTA 59.037 36.000 24.65 0.00 44.13 2.10
6636 7396 6.076092 GCGACAAATATGTTTTCGCATCTTAC 60.076 38.462 24.65 7.11 44.13 2.34
6637 7397 7.180079 CGACAAATATGTTTTCGCATCTTACT 58.820 34.615 6.59 0.00 40.74 2.24
6638 7398 8.325282 CGACAAATATGTTTTCGCATCTTACTA 58.675 33.333 6.59 0.00 40.74 1.82
6639 7399 9.638300 GACAAATATGTTTTCGCATCTTACTAG 57.362 33.333 0.00 0.00 40.74 2.57
6649 7409 6.279227 TCGCATCTTACTAGTTACTACGAC 57.721 41.667 0.00 0.00 0.00 4.34
6673 7433 5.709164 CCTGTCACTTCTTGAATTCTGGAAT 59.291 40.000 7.05 0.00 35.39 3.01
6683 7443 4.016444 TGAATTCTGGAATGTTACTGCCC 58.984 43.478 7.05 0.00 0.00 5.36
6689 7449 2.849943 TGGAATGTTACTGCCCCTGTAT 59.150 45.455 0.00 0.00 0.00 2.29
6707 7467 7.761704 CCCCTGTATAGATCTTGTAATGATTCG 59.238 40.741 0.00 0.00 29.94 3.34
6721 7481 2.201732 TGATTCGCCGACTATGCTTTC 58.798 47.619 0.00 0.00 0.00 2.62
6753 7521 2.158740 TCCAGACACCATTCGTTTCCAA 60.159 45.455 0.00 0.00 0.00 3.53
6756 7524 3.315191 CAGACACCATTCGTTTCCAAAGT 59.685 43.478 0.00 0.00 0.00 2.66
6764 7534 1.400142 TCGTTTCCAAAGTGCAGTGTG 59.600 47.619 4.56 4.56 0.00 3.82
6765 7535 1.132262 CGTTTCCAAAGTGCAGTGTGT 59.868 47.619 10.85 0.00 0.00 3.72
6778 7548 2.290641 GCAGTGTGTCTCGGAATTTGTT 59.709 45.455 0.00 0.00 0.00 2.83
6789 7559 2.747446 CGGAATTTGTTTGGATCTCGGT 59.253 45.455 0.00 0.00 0.00 4.69
6790 7560 3.426159 CGGAATTTGTTTGGATCTCGGTG 60.426 47.826 0.00 0.00 0.00 4.94
6861 7631 2.052782 AACCCCGTTCCATTATCTGC 57.947 50.000 0.00 0.00 0.00 4.26
6869 7639 1.985473 TCCATTATCTGCCACATGCC 58.015 50.000 0.00 0.00 40.16 4.40
6870 7640 0.963962 CCATTATCTGCCACATGCCC 59.036 55.000 0.00 0.00 40.16 5.36
6974 7744 2.101835 GCATTGCATTTGGCCACCG 61.102 57.895 3.88 0.00 43.89 4.94
6997 7767 3.506398 CATTGGTAAGTGGGGGAAAAGT 58.494 45.455 0.00 0.00 0.00 2.66
7040 7810 0.183492 AAAAGCTGACTGCCCAGTGA 59.817 50.000 5.53 0.00 42.66 3.41
7041 7811 0.250640 AAAGCTGACTGCCCAGTGAG 60.251 55.000 10.04 10.04 44.02 3.51
7072 7842 5.327737 TTGGTGGTGGGTTTAGAATAAGT 57.672 39.130 0.00 0.00 0.00 2.24
7097 7867 3.368427 GCTGGTTATTCAAAAGAAGGGGC 60.368 47.826 0.00 0.00 0.00 5.80
7116 7887 2.072298 GCGATGGGCTGATAAGATCAC 58.928 52.381 0.00 0.00 39.11 3.06
7118 7889 2.037641 CGATGGGCTGATAAGATCACCA 59.962 50.000 0.00 2.34 39.05 4.17
7261 8032 1.416772 GGTAGTGGGATAGGACAAGCC 59.583 57.143 0.00 0.00 0.00 4.35
7281 8052 2.166459 CCCTAGCTTTTTAGCTTTGGCC 59.834 50.000 4.84 0.00 43.52 5.36
7291 8062 7.095565 GCTTTTTAGCTTTGGCCGTTTTTAATA 60.096 33.333 0.00 0.00 39.73 0.98
7346 8117 4.389374 GAGTATCTCCTCTCCTCAGAGTG 58.611 52.174 0.00 0.00 44.49 3.51
7356 8127 3.580458 TCTCCTCAGAGTGGAAAAGGAAG 59.420 47.826 0.00 0.00 41.26 3.46
7357 8128 2.039084 TCCTCAGAGTGGAAAAGGAAGC 59.961 50.000 0.00 0.00 33.27 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 112 1.745264 GAGGAGAAGGCGAGGGATG 59.255 63.158 0.00 0.00 0.00 3.51
112 119 2.440430 TCGAGGGAGGAGAAGGCG 60.440 66.667 0.00 0.00 0.00 5.52
172 179 2.592993 CCTCTTCTCCACCCCGCAA 61.593 63.158 0.00 0.00 0.00 4.85
388 395 2.738521 CACCAGTCGCCGTTCCTG 60.739 66.667 0.00 0.00 0.00 3.86
451 458 2.763448 CACTAGGGTTTCTCTCCTCCTG 59.237 54.545 0.00 0.00 34.75 3.86
871 879 1.070615 TGAGCTGCCGTTGCTTACA 59.929 52.632 0.00 0.00 41.30 2.41
921 934 3.432252 CGCTTACTAACAACCCTCAAGTG 59.568 47.826 0.00 0.00 0.00 3.16
928 941 2.189594 AACCCGCTTACTAACAACCC 57.810 50.000 0.00 0.00 0.00 4.11
931 944 4.751098 CACTGTAAACCCGCTTACTAACAA 59.249 41.667 0.00 0.00 33.67 2.83
932 945 4.309099 CACTGTAAACCCGCTTACTAACA 58.691 43.478 0.00 0.00 33.67 2.41
933 946 3.681417 CCACTGTAAACCCGCTTACTAAC 59.319 47.826 0.00 0.00 33.67 2.34
934 947 3.577848 TCCACTGTAAACCCGCTTACTAA 59.422 43.478 0.00 0.00 33.67 2.24
935 948 3.164268 TCCACTGTAAACCCGCTTACTA 58.836 45.455 0.00 0.00 33.67 1.82
937 950 2.460757 TCCACTGTAAACCCGCTTAC 57.539 50.000 0.00 0.00 33.22 2.34
938 951 2.289819 CCTTCCACTGTAAACCCGCTTA 60.290 50.000 0.00 0.00 0.00 3.09
939 952 1.544759 CCTTCCACTGTAAACCCGCTT 60.545 52.381 0.00 0.00 0.00 4.68
940 953 0.036306 CCTTCCACTGTAAACCCGCT 59.964 55.000 0.00 0.00 0.00 5.52
941 954 1.583495 GCCTTCCACTGTAAACCCGC 61.583 60.000 0.00 0.00 0.00 6.13
942 955 1.296056 CGCCTTCCACTGTAAACCCG 61.296 60.000 0.00 0.00 0.00 5.28
943 956 0.250597 ACGCCTTCCACTGTAAACCC 60.251 55.000 0.00 0.00 0.00 4.11
948 961 1.965643 ACAGTTACGCCTTCCACTGTA 59.034 47.619 1.98 0.00 46.36 2.74
949 962 0.756903 ACAGTTACGCCTTCCACTGT 59.243 50.000 0.00 0.00 44.03 3.55
950 963 1.878953 AACAGTTACGCCTTCCACTG 58.121 50.000 0.00 0.00 42.08 3.66
951 964 2.490991 GAAACAGTTACGCCTTCCACT 58.509 47.619 0.00 0.00 0.00 4.00
952 965 1.534163 GGAAACAGTTACGCCTTCCAC 59.466 52.381 7.27 0.00 36.39 4.02
953 966 1.874739 CGGAAACAGTTACGCCTTCCA 60.875 52.381 11.06 0.00 33.44 3.53
954 967 0.794473 CGGAAACAGTTACGCCTTCC 59.206 55.000 0.00 3.41 33.44 3.46
980 993 4.570369 CCATTTTGCCTGTTCGAACTTTTT 59.430 37.500 27.32 3.58 0.00 1.94
988 1002 1.247567 ACCTCCATTTTGCCTGTTCG 58.752 50.000 0.00 0.00 0.00 3.95
989 1003 2.867647 GCAACCTCCATTTTGCCTGTTC 60.868 50.000 0.00 0.00 41.95 3.18
1200 1214 1.364171 GGATCTCACCCGTCGGATG 59.636 63.158 14.39 5.90 0.00 3.51
1233 1247 2.179517 GGCGCGATCCGGATCTAG 59.820 66.667 35.31 28.96 35.72 2.43
1367 1381 6.013725 TGAAACACTAGTGGTGGTCATTAGAT 60.014 38.462 26.12 0.66 46.43 1.98
1369 1383 5.547465 TGAAACACTAGTGGTGGTCATTAG 58.453 41.667 26.12 0.00 46.43 1.73
1382 1396 7.217906 AGGAAACCTTTACTCTGAAACACTAG 58.782 38.462 0.00 0.00 0.00 2.57
1392 1406 3.487372 GGCACAAGGAAACCTTTACTCT 58.513 45.455 0.00 0.00 41.69 3.24
1401 1415 2.156098 TCCATTACGGCACAAGGAAAC 58.844 47.619 0.00 0.00 33.14 2.78
1404 1418 2.799126 ATTCCATTACGGCACAAGGA 57.201 45.000 0.00 0.00 33.14 3.36
1411 1425 4.499040 CGAATTGTCAAATTCCATTACGGC 59.501 41.667 5.78 0.00 46.05 5.68
1417 1431 4.766891 ACCAGTCGAATTGTCAAATTCCAT 59.233 37.500 5.78 0.00 46.05 3.41
1425 1439 2.766313 CTCCAACCAGTCGAATTGTCA 58.234 47.619 0.00 0.00 0.00 3.58
1427 1441 1.202758 TGCTCCAACCAGTCGAATTGT 60.203 47.619 0.00 0.00 0.00 2.71
1446 1460 3.926527 TCTATTTCACACGCAGCTTAGTG 59.073 43.478 14.74 14.74 43.46 2.74
1450 1464 1.734465 GCTCTATTTCACACGCAGCTT 59.266 47.619 0.00 0.00 0.00 3.74
1490 1504 0.530650 ATGGTCAGGTTAGCATCGCG 60.531 55.000 0.00 0.00 32.22 5.87
1493 1507 3.134458 GCACTATGGTCAGGTTAGCATC 58.866 50.000 0.00 0.00 38.48 3.91
1518 1532 6.070078 TGGGCATCATAGATTCATAGCACATA 60.070 38.462 0.00 0.00 0.00 2.29
1524 1538 4.840271 TGCTGGGCATCATAGATTCATAG 58.160 43.478 0.00 0.00 31.71 2.23
1525 1539 4.287845 ACTGCTGGGCATCATAGATTCATA 59.712 41.667 0.00 0.00 38.13 2.15
1526 1540 3.074094 ACTGCTGGGCATCATAGATTCAT 59.926 43.478 0.00 0.00 38.13 2.57
1527 1541 2.440627 ACTGCTGGGCATCATAGATTCA 59.559 45.455 0.00 0.00 38.13 2.57
1528 1542 3.072944 GACTGCTGGGCATCATAGATTC 58.927 50.000 0.00 0.00 38.13 2.52
1529 1543 2.440627 TGACTGCTGGGCATCATAGATT 59.559 45.455 0.00 0.00 38.13 2.40
1530 1544 2.052468 TGACTGCTGGGCATCATAGAT 58.948 47.619 0.00 0.00 38.13 1.98
1531 1545 1.499368 TGACTGCTGGGCATCATAGA 58.501 50.000 0.00 0.00 38.13 1.98
1532 1546 2.152016 CATGACTGCTGGGCATCATAG 58.848 52.381 12.95 7.68 42.79 2.23
1541 1555 2.938451 TCGCTAAAATCATGACTGCTGG 59.062 45.455 0.00 0.00 0.00 4.85
1545 1559 7.246311 ACAGAAAATCGCTAAAATCATGACTG 58.754 34.615 0.00 0.00 0.00 3.51
1553 1567 8.931385 ATGCAAATACAGAAAATCGCTAAAAT 57.069 26.923 0.00 0.00 0.00 1.82
1558 1572 5.577945 CCAAATGCAAATACAGAAAATCGCT 59.422 36.000 0.00 0.00 0.00 4.93
1569 1588 4.535526 AACTGACCCCAAATGCAAATAC 57.464 40.909 0.00 0.00 0.00 1.89
1571 1590 3.515104 CCTAACTGACCCCAAATGCAAAT 59.485 43.478 0.00 0.00 0.00 2.32
1586 1605 0.108615 CTGCGTCTGGGACCTAACTG 60.109 60.000 0.00 0.00 0.00 3.16
1599 1618 0.793250 GCTTTTGAGAGACCTGCGTC 59.207 55.000 0.00 0.00 39.50 5.19
1670 1689 6.072508 TCCTTCACAATCTGTTAAGCATCAAC 60.073 38.462 0.00 0.00 31.96 3.18
1681 1700 3.392616 AGTGTTCCTCCTTCACAATCTGT 59.607 43.478 0.00 0.00 34.94 3.41
1735 1754 3.760738 TCCATATGAACACACCTTTGCA 58.239 40.909 3.65 0.00 0.00 4.08
1789 1808 9.832445 TGCCTAGAAGTTATATAAAAACCAGAG 57.168 33.333 0.00 0.00 0.00 3.35
1802 1821 3.891049 CTTGCCCTTGCCTAGAAGTTAT 58.109 45.455 0.00 0.00 36.33 1.89
1820 1839 6.662616 CGATGATTTTTAGTATCCTGGCTTG 58.337 40.000 0.00 0.00 0.00 4.01
1829 1848 7.865706 AAGGAACAGCGATGATTTTTAGTAT 57.134 32.000 8.12 0.00 0.00 2.12
1872 1891 8.845413 AGAACATAAGGAGCATCAAGATATTC 57.155 34.615 0.00 0.00 36.25 1.75
1881 1900 5.574443 GCAAAACAAGAACATAAGGAGCATC 59.426 40.000 0.00 0.00 0.00 3.91
1942 1961 2.477189 GCCAACGGTCAACCAATAATCG 60.477 50.000 0.00 0.00 35.14 3.34
1957 1976 2.981859 ATCCCAGTAAGTAGCCAACG 57.018 50.000 0.00 0.00 0.00 4.10
1960 1979 5.192923 ACCAATAAATCCCAGTAAGTAGCCA 59.807 40.000 0.00 0.00 0.00 4.75
1981 2000 5.285651 CCGAAGAAAAACAAAAGCATACCA 58.714 37.500 0.00 0.00 0.00 3.25
1997 2016 3.004944 GCACACCAATAAAACCCGAAGAA 59.995 43.478 0.00 0.00 0.00 2.52
2002 2021 3.056891 AGAATGCACACCAATAAAACCCG 60.057 43.478 0.00 0.00 0.00 5.28
2014 2033 4.952262 TGCTCTTCATAAGAATGCACAC 57.048 40.909 0.00 0.00 37.82 3.82
2053 2072 5.506730 TGTCAGGGTGGTGATATAAAACA 57.493 39.130 0.00 0.00 0.00 2.83
2071 2090 7.434897 GTGCTCAAAAACTTGAATGTATTGTCA 59.565 33.333 0.00 0.00 0.00 3.58
2072 2091 7.649306 AGTGCTCAAAAACTTGAATGTATTGTC 59.351 33.333 0.00 0.00 0.00 3.18
2073 2092 7.491682 AGTGCTCAAAAACTTGAATGTATTGT 58.508 30.769 0.00 0.00 0.00 2.71
2074 2093 7.935338 AGTGCTCAAAAACTTGAATGTATTG 57.065 32.000 0.00 0.00 0.00 1.90
2079 2098 9.897744 TCTATTAAGTGCTCAAAAACTTGAATG 57.102 29.630 0.00 0.00 37.23 2.67
2081 2100 9.337396 TCTCTATTAAGTGCTCAAAAACTTGAA 57.663 29.630 0.00 0.00 37.23 2.69
2105 2124 6.883756 GGAGATTCAGACAGGAAGAAAATTCT 59.116 38.462 0.00 0.00 39.74 2.40
2112 2131 4.935578 TGTAGGAGATTCAGACAGGAAGA 58.064 43.478 0.00 0.00 0.00 2.87
2117 2136 5.047731 TGAACACTGTAGGAGATTCAGACAG 60.048 44.000 0.00 0.00 42.58 3.51
2119 2138 5.392767 TGAACACTGTAGGAGATTCAGAC 57.607 43.478 0.00 0.00 31.13 3.51
2131 2150 9.733556 AATATTAACCACAGAATGAACACTGTA 57.266 29.630 0.00 0.00 44.07 2.74
2182 2212 7.960262 TGATTGAGATGAGTCTAATACAGCAT 58.040 34.615 0.00 0.00 33.97 3.79
2183 2213 7.352079 TGATTGAGATGAGTCTAATACAGCA 57.648 36.000 0.00 0.00 33.97 4.41
2184 2214 8.830201 AATGATTGAGATGAGTCTAATACAGC 57.170 34.615 0.00 0.00 33.97 4.40
2197 2227 9.865321 AAGTTATGTTGGAAAATGATTGAGATG 57.135 29.630 0.00 0.00 0.00 2.90
2198 2228 9.865321 CAAGTTATGTTGGAAAATGATTGAGAT 57.135 29.630 0.00 0.00 0.00 2.75
2229 2259 5.570973 GCGACTGCTACATCAACTGATATAG 59.429 44.000 1.36 1.36 35.29 1.31
2231 2261 4.302455 GCGACTGCTACATCAACTGATAT 58.698 43.478 0.00 0.00 38.39 1.63
2246 2276 2.259618 TCGATCAAACTAAGCGACTGC 58.740 47.619 0.00 0.00 43.24 4.40
2265 2295 7.773690 AGGGTACAAAGGTTACATCATAACATC 59.226 37.037 0.00 0.00 0.00 3.06
2266 2296 7.639378 AGGGTACAAAGGTTACATCATAACAT 58.361 34.615 0.00 0.00 0.00 2.71
2281 2312 4.887655 AGGACAAAGTTGAAGGGTACAAAG 59.112 41.667 0.00 0.00 0.00 2.77
2293 2324 5.413833 AGATTCAGTATGCAGGACAAAGTTG 59.586 40.000 4.50 0.00 34.76 3.16
2294 2325 5.413833 CAGATTCAGTATGCAGGACAAAGTT 59.586 40.000 4.50 0.00 34.76 2.66
2295 2326 4.940046 CAGATTCAGTATGCAGGACAAAGT 59.060 41.667 4.50 0.00 34.76 2.66
2298 2329 4.223700 AGACAGATTCAGTATGCAGGACAA 59.776 41.667 4.50 0.00 34.76 3.18
2300 2331 4.399004 AGACAGATTCAGTATGCAGGAC 57.601 45.455 0.00 0.00 34.76 3.85
2302 2333 7.665690 ACTAATAGACAGATTCAGTATGCAGG 58.334 38.462 0.00 0.00 34.76 4.85
2322 2353 8.368668 GGGATGCAGTGTAAGTAATAGACTAAT 58.631 37.037 0.00 0.00 36.04 1.73
2325 2356 5.900123 AGGGATGCAGTGTAAGTAATAGACT 59.100 40.000 0.00 0.00 38.59 3.24
2326 2357 5.986135 CAGGGATGCAGTGTAAGTAATAGAC 59.014 44.000 0.00 0.00 0.00 2.59
2331 2362 4.469586 TGATCAGGGATGCAGTGTAAGTAA 59.530 41.667 0.00 0.00 0.00 2.24
2332 2363 4.030216 TGATCAGGGATGCAGTGTAAGTA 58.970 43.478 0.00 0.00 0.00 2.24
2333 2364 2.840038 TGATCAGGGATGCAGTGTAAGT 59.160 45.455 0.00 0.00 0.00 2.24
2335 2366 3.455543 TGATGATCAGGGATGCAGTGTAA 59.544 43.478 0.09 0.00 0.00 2.41
2338 2369 2.632987 TGATGATCAGGGATGCAGTG 57.367 50.000 0.09 0.00 0.00 3.66
2339 2370 3.285484 GTTTGATGATCAGGGATGCAGT 58.715 45.455 0.09 0.00 0.00 4.40
2340 2371 3.066342 GTGTTTGATGATCAGGGATGCAG 59.934 47.826 0.09 0.00 0.00 4.41
2341 2372 3.018856 GTGTTTGATGATCAGGGATGCA 58.981 45.455 0.09 0.00 0.00 3.96
2342 2373 2.360165 GGTGTTTGATGATCAGGGATGC 59.640 50.000 0.09 0.00 0.00 3.91
2343 2374 2.954318 GGGTGTTTGATGATCAGGGATG 59.046 50.000 0.09 0.00 0.00 3.51
2344 2375 2.582172 TGGGTGTTTGATGATCAGGGAT 59.418 45.455 0.09 0.00 0.00 3.85
2345 2376 1.991813 TGGGTGTTTGATGATCAGGGA 59.008 47.619 0.09 0.00 0.00 4.20
2382 2413 5.365021 ACTAATCTCATGGCTACAGCTTT 57.635 39.130 0.54 0.00 41.70 3.51
2516 2584 4.591072 ACTTATATTCCTCCTCAGTGCTCC 59.409 45.833 0.00 0.00 0.00 4.70
2517 2585 5.799827 ACTTATATTCCTCCTCAGTGCTC 57.200 43.478 0.00 0.00 0.00 4.26
2533 2601 6.406370 ACTGACACTTGCTGCATAACTTATA 58.594 36.000 1.84 0.00 0.00 0.98
2537 2605 3.131709 ACTGACACTTGCTGCATAACT 57.868 42.857 1.84 0.00 0.00 2.24
2539 2607 2.030893 GCAACTGACACTTGCTGCATAA 60.031 45.455 1.84 0.00 40.79 1.90
2546 2614 3.259207 CAAGTAGCAACTGACACTTGC 57.741 47.619 10.75 10.75 40.82 4.01
2559 2627 5.748630 GGGCTAAAATTACATTGCAAGTAGC 59.251 40.000 4.94 7.74 45.96 3.58
2560 2628 6.862209 TGGGCTAAAATTACATTGCAAGTAG 58.138 36.000 4.94 0.00 0.00 2.57
2561 2629 6.842437 TGGGCTAAAATTACATTGCAAGTA 57.158 33.333 4.94 5.04 0.00 2.24
2562 2630 5.736951 TGGGCTAAAATTACATTGCAAGT 57.263 34.783 4.94 6.05 0.00 3.16
2563 2631 5.063817 GCTTGGGCTAAAATTACATTGCAAG 59.936 40.000 4.94 0.00 35.22 4.01
2596 2664 4.457257 GCTACAAGCAAGGGATGGATAATC 59.543 45.833 0.00 0.00 41.89 1.75
2654 2724 2.040012 CCTGCCTGCAGAATATGATCCT 59.960 50.000 20.29 0.00 46.30 3.24
2662 2732 0.622136 TCACATCCTGCCTGCAGAAT 59.378 50.000 20.29 2.36 46.30 2.40
2667 2737 1.180029 ATTGTTCACATCCTGCCTGC 58.820 50.000 0.00 0.00 0.00 4.85
2668 2738 3.256383 TCAAATTGTTCACATCCTGCCTG 59.744 43.478 0.00 0.00 0.00 4.85
2706 2776 0.679002 CTGGGAGTGTCTTGCCATGG 60.679 60.000 7.63 7.63 37.96 3.66
2726 2796 1.065273 CAATGCGGATCTTGCTGGC 59.935 57.895 10.94 0.00 0.00 4.85
2739 2810 5.782047 ACTCATATCAGAGCTAGTCAATGC 58.218 41.667 0.00 0.00 39.26 3.56
2763 2834 4.268359 TCAGCATTGCAACATGGTATGTA 58.732 39.130 11.91 0.00 44.07 2.29
2770 2841 1.286501 GGCATCAGCATTGCAACATG 58.713 50.000 11.91 10.21 44.61 3.21
2771 2842 0.899019 TGGCATCAGCATTGCAACAT 59.101 45.000 11.91 0.00 44.61 2.71
2775 2846 1.600511 CCACTGGCATCAGCATTGCA 61.601 55.000 11.91 0.00 44.59 4.08
2804 2875 2.174360 TGATGCTCTGCTGTAGTGACT 58.826 47.619 0.00 0.00 0.00 3.41
2805 2876 2.662006 TGATGCTCTGCTGTAGTGAC 57.338 50.000 0.00 0.00 0.00 3.67
2806 2877 2.564504 ACTTGATGCTCTGCTGTAGTGA 59.435 45.455 0.00 0.00 0.00 3.41
2813 2884 5.242393 ACAAAAATACACTTGATGCTCTGCT 59.758 36.000 0.00 0.00 0.00 4.24
2820 2891 7.701924 ACTTGACACACAAAAATACACTTGATG 59.298 33.333 0.00 0.00 38.08 3.07
2822 2893 7.151999 ACTTGACACACAAAAATACACTTGA 57.848 32.000 0.00 0.00 38.08 3.02
2832 2903 4.642437 TGGCTCATAACTTGACACACAAAA 59.358 37.500 0.00 0.00 38.08 2.44
2842 2913 6.707608 TGACTAGCATAATGGCTCATAACTTG 59.292 38.462 0.00 0.00 44.54 3.16
2854 2925 8.090831 TGCTTTCCTACTATGACTAGCATAATG 58.909 37.037 0.00 2.14 38.92 1.90
2873 2944 3.181483 CCTTGGCAGTATCAATGCTTTCC 60.181 47.826 0.00 0.00 43.35 3.13
2929 3108 1.137872 AGAGGAGCAAGTAGGCAATCG 59.862 52.381 0.00 0.00 35.83 3.34
2931 3110 4.033709 TCTAAGAGGAGCAAGTAGGCAAT 58.966 43.478 0.00 0.00 35.83 3.56
3019 3198 6.543831 AGAAAAACTTCGGATAGGATTCATGG 59.456 38.462 0.00 0.00 0.00 3.66
3022 3201 6.374333 CCAAGAAAAACTTCGGATAGGATTCA 59.626 38.462 0.00 0.00 36.61 2.57
3033 3212 5.578776 ACTTTACTGCCAAGAAAAACTTCG 58.421 37.500 0.00 0.00 36.61 3.79
3055 3234 9.807649 AAATTGTATCCAAAGCATATCTCAAAC 57.192 29.630 0.00 0.00 33.44 2.93
3085 3264 5.220662 GCGAATGAAGCAGTTTAGATTAGCA 60.221 40.000 0.00 0.00 34.19 3.49
3094 3273 1.549203 ATGGGCGAATGAAGCAGTTT 58.451 45.000 0.00 0.00 36.08 2.66
3108 3287 2.448926 AAGCAACGGTTAAAATGGGC 57.551 45.000 0.00 0.00 0.00 5.36
3224 3403 9.547753 GACAACACTATACATAACTTCCATGAT 57.452 33.333 0.00 0.00 0.00 2.45
3239 3418 4.847512 TCTTTTGAGGGGGACAACACTATA 59.152 41.667 0.00 0.00 0.00 1.31
3274 3453 2.831685 TACAGTTTGCCGACACAGAT 57.168 45.000 0.00 0.00 0.00 2.90
3278 3457 2.423577 AGGAATACAGTTTGCCGACAC 58.576 47.619 0.00 0.00 0.00 3.67
3283 3462 7.916914 TCTTACTTTAGGAATACAGTTTGCC 57.083 36.000 0.00 0.00 0.00 4.52
3321 3501 9.341899 GTGCAGACAAAAGATACGAATAAAAAT 57.658 29.630 0.00 0.00 0.00 1.82
3325 3505 5.935206 TGGTGCAGACAAAAGATACGAATAA 59.065 36.000 0.00 0.00 0.00 1.40
3366 3546 8.715088 TCGATTAAAGTTTACTTACCAAGAAGC 58.285 33.333 0.00 0.00 34.61 3.86
3378 3558 8.395633 ACATGGTAAGCATCGATTAAAGTTTAC 58.604 33.333 0.00 3.56 0.00 2.01
3405 3585 4.960938 TGCAACTATGAGTAGCTAATGGG 58.039 43.478 0.00 0.00 0.00 4.00
3409 3589 5.183228 GGGTTTGCAACTATGAGTAGCTAA 58.817 41.667 0.00 0.00 0.00 3.09
3412 3592 2.351726 CGGGTTTGCAACTATGAGTAGC 59.648 50.000 0.00 0.00 0.00 3.58
3413 3593 2.936498 CCGGGTTTGCAACTATGAGTAG 59.064 50.000 0.00 0.00 0.00 2.57
3414 3594 2.303600 ACCGGGTTTGCAACTATGAGTA 59.696 45.455 6.32 0.00 0.00 2.59
3415 3595 1.073284 ACCGGGTTTGCAACTATGAGT 59.927 47.619 6.32 0.00 0.00 3.41
3478 3663 5.016051 TGACAGATGATTCTCAAGTAGGC 57.984 43.478 0.00 0.00 0.00 3.93
3518 3704 5.192927 TGGTCTCAAAACTCAATCACAAGT 58.807 37.500 0.00 0.00 0.00 3.16
3521 3707 4.136796 CCTGGTCTCAAAACTCAATCACA 58.863 43.478 0.00 0.00 0.00 3.58
3522 3708 3.503748 CCCTGGTCTCAAAACTCAATCAC 59.496 47.826 0.00 0.00 0.00 3.06
3529 3715 2.040412 GTCATCCCCTGGTCTCAAAACT 59.960 50.000 0.00 0.00 0.00 2.66
3543 3729 9.905713 TTGCCTATTTATCTATAATGTCATCCC 57.094 33.333 0.00 0.00 0.00 3.85
3603 3789 1.850345 TGGGTTCCAAACTCCTGTCTT 59.150 47.619 0.00 0.00 0.00 3.01
3623 3809 8.851145 CATGTACTAGTATACCAGTGTGATTCT 58.149 37.037 13.45 0.00 0.00 2.40
3641 3827 6.203813 TGGGGTTATCCTACAACATGTACTA 58.796 40.000 0.00 0.00 35.33 1.82
3644 3830 5.034200 ACTGGGGTTATCCTACAACATGTA 58.966 41.667 0.00 0.00 35.33 2.29
3651 3837 3.502051 AGGAACTGGGGTTATCCTACA 57.498 47.619 0.00 0.00 37.18 2.74
3665 3851 1.608590 CGTTGTGGCAATTCAGGAACT 59.391 47.619 0.00 0.00 43.88 3.01
3666 3852 1.336755 ACGTTGTGGCAATTCAGGAAC 59.663 47.619 0.00 0.00 0.00 3.62
3669 3855 3.477504 CACGTTGTGGCAATTCAGG 57.522 52.632 0.00 0.00 0.00 3.86
3696 3886 7.979537 TGCAATAATTCTCGCTAAGAAGTAAGA 59.020 33.333 9.10 0.00 46.95 2.10
3697 3887 8.131455 TGCAATAATTCTCGCTAAGAAGTAAG 57.869 34.615 9.10 7.06 46.95 2.34
3710 3900 5.747197 CACAATTCCAGCTGCAATAATTCTC 59.253 40.000 8.66 0.00 0.00 2.87
3713 3903 5.394883 CCTCACAATTCCAGCTGCAATAATT 60.395 40.000 8.66 8.28 0.00 1.40
3736 4009 7.175119 CCTTTTAGGCTAATTAGTGAATAGGCC 59.825 40.741 13.91 7.11 40.37 5.19
3737 4010 8.100508 CCTTTTAGGCTAATTAGTGAATAGGC 57.899 38.462 13.91 1.11 0.00 3.93
3840 4113 6.347696 TCAAAACCTTCTGTCATGCATTTTT 58.652 32.000 0.00 0.00 0.00 1.94
3848 4121 2.154462 CGGCTCAAAACCTTCTGTCAT 58.846 47.619 0.00 0.00 0.00 3.06
3946 4219 3.649023 TGCCTAAGGAAAAGTGGTACTCA 59.351 43.478 0.00 0.00 0.00 3.41
3947 4220 4.001652 GTGCCTAAGGAAAAGTGGTACTC 58.998 47.826 0.00 0.00 32.10 2.59
3953 4226 1.886542 GGGTGTGCCTAAGGAAAAGTG 59.113 52.381 0.00 0.00 34.45 3.16
3980 4255 4.555262 CCACGTTTTTAGCAATTGGATGT 58.445 39.130 7.72 0.00 0.00 3.06
3981 4256 3.367630 GCCACGTTTTTAGCAATTGGATG 59.632 43.478 7.72 0.00 0.00 3.51
3998 4273 5.292765 AGAATATGATTCTACAGTGCCACG 58.707 41.667 0.00 0.00 0.00 4.94
4002 4277 8.430801 AACAGAAGAATATGATTCTACAGTGC 57.569 34.615 2.25 0.00 34.04 4.40
4083 4358 8.458573 AAGTGTGGTGATGTTTGAAATTAGTA 57.541 30.769 0.00 0.00 0.00 1.82
4102 4377 5.955488 TCTCCGAATTAAGAGAGAAGTGTG 58.045 41.667 3.35 0.00 34.23 3.82
4103 4378 6.378564 TCATCTCCGAATTAAGAGAGAAGTGT 59.621 38.462 11.41 0.00 42.19 3.55
4106 4381 7.270757 TCTCATCTCCGAATTAAGAGAGAAG 57.729 40.000 11.41 10.57 42.19 2.85
4118 4393 6.715347 TGAACATCTTATCTCATCTCCGAA 57.285 37.500 0.00 0.00 0.00 4.30
4252 4527 9.029243 CACAAAAGTGAAATGCAAATGTAGTAA 57.971 29.630 0.00 0.00 0.00 2.24
4254 4529 6.479660 CCACAAAAGTGAAATGCAAATGTAGT 59.520 34.615 0.00 0.00 0.00 2.73
4255 4530 6.479660 ACCACAAAAGTGAAATGCAAATGTAG 59.520 34.615 0.00 0.00 0.00 2.74
4259 4534 6.701400 GTCTACCACAAAAGTGAAATGCAAAT 59.299 34.615 0.00 0.00 0.00 2.32
4260 4535 6.039616 GTCTACCACAAAAGTGAAATGCAAA 58.960 36.000 0.00 0.00 0.00 3.68
4263 4538 5.438761 AGTCTACCACAAAAGTGAAATGC 57.561 39.130 0.00 0.00 0.00 3.56
4264 4539 7.012327 TCAGAAGTCTACCACAAAAGTGAAATG 59.988 37.037 0.00 0.00 0.00 2.32
4271 4570 7.962964 TGTTATCAGAAGTCTACCACAAAAG 57.037 36.000 0.00 0.00 0.00 2.27
4324 4623 2.111384 GGATCCTACTCACTGAAGGCA 58.889 52.381 3.84 0.00 0.00 4.75
4347 4646 5.687770 TCGAACAATGAGCAAATTCTGAA 57.312 34.783 0.00 0.00 0.00 3.02
4348 4647 5.885230 ATCGAACAATGAGCAAATTCTGA 57.115 34.783 0.00 0.00 0.00 3.27
4353 4652 8.761575 AATAACAAATCGAACAATGAGCAAAT 57.238 26.923 0.00 0.00 0.00 2.32
4498 4797 6.208204 ACAGAGCTCAGAAGTGCAAAAATAAT 59.792 34.615 17.77 0.00 36.73 1.28
4501 4800 3.887716 ACAGAGCTCAGAAGTGCAAAAAT 59.112 39.130 17.77 0.00 36.73 1.82
4541 4848 9.495572 AAGAGTCTATTTTACTGGAGAGTTTTG 57.504 33.333 0.00 0.00 33.21 2.44
4546 4853 6.975772 CGGAAAGAGTCTATTTTACTGGAGAG 59.024 42.308 0.00 0.00 0.00 3.20
4587 4894 6.972901 GCCCTAGATTGTAAATTACTGCAAAC 59.027 38.462 4.67 0.00 0.00 2.93
4592 4899 9.915629 CTAGTAGCCCTAGATTGTAAATTACTG 57.084 37.037 4.67 0.00 45.21 2.74
4609 4916 6.151480 CAGCTAATACCTAACTCTAGTAGCCC 59.849 46.154 0.00 0.00 31.17 5.19
4626 5097 5.602561 TCTCTCAAGTAATGCCCAGCTAATA 59.397 40.000 0.00 0.00 0.00 0.98
4654 5129 2.889512 TCCAGCTAAGACTCAACCTCA 58.110 47.619 0.00 0.00 0.00 3.86
4680 5155 8.742777 TGCAAAGCTAAATGACAAGAATATCTT 58.257 29.630 0.00 0.00 37.14 2.40
4689 5164 2.892852 AGGCTGCAAAGCTAAATGACAA 59.107 40.909 0.50 0.00 34.73 3.18
4721 5196 7.308435 AGTGTATTTCAGAAGCAAAGTAATGC 58.692 34.615 0.00 0.00 46.78 3.56
4782 5257 6.532365 AAGCTCGCTAATCAGTAAAATAGC 57.468 37.500 0.00 0.00 37.88 2.97
4863 5339 2.549754 TGTGCTCAGAACAAGCTAAAGC 59.450 45.455 0.00 0.00 40.50 3.51
4870 5346 8.709386 AGTACTTATATTGTGCTCAGAACAAG 57.291 34.615 4.06 0.00 40.64 3.16
4889 5365 2.305858 AGTGAACGGAGGGAGTACTT 57.694 50.000 0.00 0.00 0.00 2.24
4890 5366 2.305858 AAGTGAACGGAGGGAGTACT 57.694 50.000 0.00 0.00 0.00 2.73
4891 5367 3.064931 CAAAAGTGAACGGAGGGAGTAC 58.935 50.000 0.00 0.00 0.00 2.73
4892 5368 2.701951 ACAAAAGTGAACGGAGGGAGTA 59.298 45.455 0.00 0.00 0.00 2.59
4893 5369 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
4894 5370 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
4895 5371 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
4896 5372 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
4897 5373 4.124238 TGACTTACAAAAGTGAACGGAGG 58.876 43.478 0.00 0.00 46.09 4.30
4898 5374 5.924475 ATGACTTACAAAAGTGAACGGAG 57.076 39.130 0.00 0.00 46.09 4.63
4899 5375 6.316640 TGAAATGACTTACAAAAGTGAACGGA 59.683 34.615 0.00 0.00 46.09 4.69
4900 5376 6.491394 TGAAATGACTTACAAAAGTGAACGG 58.509 36.000 0.00 0.00 46.09 4.44
4901 5377 7.406553 TCTGAAATGACTTACAAAAGTGAACG 58.593 34.615 0.00 0.00 46.09 3.95
4902 5378 9.567848 TTTCTGAAATGACTTACAAAAGTGAAC 57.432 29.630 0.00 0.00 46.09 3.18
4904 5380 9.567848 GTTTTCTGAAATGACTTACAAAAGTGA 57.432 29.630 3.31 0.00 46.09 3.41
4905 5381 9.573133 AGTTTTCTGAAATGACTTACAAAAGTG 57.427 29.630 3.31 0.00 46.09 3.16
4907 5383 9.787532 TGAGTTTTCTGAAATGACTTACAAAAG 57.212 29.630 3.31 0.00 38.77 2.27
4913 5389 9.748708 CCATTTTGAGTTTTCTGAAATGACTTA 57.251 29.630 3.31 0.00 39.62 2.24
4914 5390 7.225341 GCCATTTTGAGTTTTCTGAAATGACTT 59.775 33.333 3.31 0.00 39.62 3.01
4915 5391 6.703165 GCCATTTTGAGTTTTCTGAAATGACT 59.297 34.615 3.31 5.47 39.62 3.41
4916 5392 6.703165 AGCCATTTTGAGTTTTCTGAAATGAC 59.297 34.615 3.31 0.37 39.62 3.06
4917 5393 6.702723 CAGCCATTTTGAGTTTTCTGAAATGA 59.297 34.615 3.31 0.00 39.62 2.57
4918 5394 6.480981 ACAGCCATTTTGAGTTTTCTGAAATG 59.519 34.615 3.31 0.00 38.44 2.32
4919 5395 6.585416 ACAGCCATTTTGAGTTTTCTGAAAT 58.415 32.000 3.31 0.00 33.49 2.17
4920 5396 5.976458 ACAGCCATTTTGAGTTTTCTGAAA 58.024 33.333 0.00 0.00 31.68 2.69
4921 5397 5.596836 ACAGCCATTTTGAGTTTTCTGAA 57.403 34.783 0.00 0.00 0.00 3.02
4922 5398 5.596836 AACAGCCATTTTGAGTTTTCTGA 57.403 34.783 0.00 0.00 0.00 3.27
4923 5399 6.667007 AAAACAGCCATTTTGAGTTTTCTG 57.333 33.333 0.00 0.00 37.74 3.02
4933 5409 6.479660 CAGACAATGTACAAAACAGCCATTTT 59.520 34.615 0.00 0.00 42.70 1.82
4934 5410 5.984926 CAGACAATGTACAAAACAGCCATTT 59.015 36.000 0.00 0.00 42.70 2.32
4935 5411 5.301551 TCAGACAATGTACAAAACAGCCATT 59.698 36.000 0.00 0.00 42.70 3.16
4936 5412 4.826733 TCAGACAATGTACAAAACAGCCAT 59.173 37.500 0.00 0.00 42.70 4.40
4937 5413 4.203226 TCAGACAATGTACAAAACAGCCA 58.797 39.130 0.00 0.00 42.70 4.75
4938 5414 4.829064 TCAGACAATGTACAAAACAGCC 57.171 40.909 0.00 0.00 42.70 4.85
4939 5415 6.697019 ACATTTCAGACAATGTACAAAACAGC 59.303 34.615 0.00 0.00 44.08 4.40
4940 5416 8.131100 AGACATTTCAGACAATGTACAAAACAG 58.869 33.333 0.00 0.00 45.55 3.16
4941 5417 7.995289 AGACATTTCAGACAATGTACAAAACA 58.005 30.769 0.00 0.00 45.55 2.83
4942 5418 8.856490 AAGACATTTCAGACAATGTACAAAAC 57.144 30.769 0.00 0.00 45.55 2.43
4943 5419 8.681806 TGAAGACATTTCAGACAATGTACAAAA 58.318 29.630 0.00 0.00 45.55 2.44
4944 5420 8.219546 TGAAGACATTTCAGACAATGTACAAA 57.780 30.769 0.00 0.00 45.55 2.83
4945 5421 7.800155 TGAAGACATTTCAGACAATGTACAA 57.200 32.000 0.00 0.00 45.55 2.41
4946 5422 7.041167 CCTTGAAGACATTTCAGACAATGTACA 60.041 37.037 0.00 0.00 45.55 2.90
4947 5423 7.041098 ACCTTGAAGACATTTCAGACAATGTAC 60.041 37.037 9.58 0.00 45.55 2.90
4948 5424 6.998074 ACCTTGAAGACATTTCAGACAATGTA 59.002 34.615 9.58 0.00 45.55 2.29
4950 5426 6.206243 AGACCTTGAAGACATTTCAGACAATG 59.794 38.462 0.00 0.00 39.67 2.82
4951 5427 6.302269 AGACCTTGAAGACATTTCAGACAAT 58.698 36.000 0.00 0.00 0.00 2.71
4952 5428 5.684704 AGACCTTGAAGACATTTCAGACAA 58.315 37.500 0.00 0.00 0.00 3.18
4953 5429 5.296151 AGACCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 0.00 3.41
4954 5430 7.913674 ATAAGACCTTGAAGACATTTCAGAC 57.086 36.000 0.00 0.00 0.00 3.51
4960 5436 9.793259 TCACTTTTATAAGACCTTGAAGACATT 57.207 29.630 0.00 0.00 35.30 2.71
4961 5437 9.793259 TTCACTTTTATAAGACCTTGAAGACAT 57.207 29.630 0.00 0.00 35.30 3.06
4962 5438 9.052759 GTTCACTTTTATAAGACCTTGAAGACA 57.947 33.333 0.00 0.00 35.30 3.41
4963 5439 9.052759 TGTTCACTTTTATAAGACCTTGAAGAC 57.947 33.333 0.00 0.00 35.30 3.01
4964 5440 9.273016 CTGTTCACTTTTATAAGACCTTGAAGA 57.727 33.333 0.00 0.00 35.30 2.87
4965 5441 9.273016 TCTGTTCACTTTTATAAGACCTTGAAG 57.727 33.333 0.00 0.00 35.30 3.02
4966 5442 9.273016 CTCTGTTCACTTTTATAAGACCTTGAA 57.727 33.333 0.00 0.00 35.30 2.69
4967 5443 7.878127 CCTCTGTTCACTTTTATAAGACCTTGA 59.122 37.037 0.00 0.00 35.30 3.02
4968 5444 7.119846 CCCTCTGTTCACTTTTATAAGACCTTG 59.880 40.741 0.00 0.00 35.30 3.61
4969 5445 7.017254 TCCCTCTGTTCACTTTTATAAGACCTT 59.983 37.037 0.00 0.00 35.30 3.50
4970 5446 6.500751 TCCCTCTGTTCACTTTTATAAGACCT 59.499 38.462 0.00 0.00 35.30 3.85
4971 5447 6.708285 TCCCTCTGTTCACTTTTATAAGACC 58.292 40.000 0.00 0.00 35.30 3.85
4972 5448 7.387643 ACTCCCTCTGTTCACTTTTATAAGAC 58.612 38.462 0.00 0.00 35.30 3.01
4973 5449 7.554959 ACTCCCTCTGTTCACTTTTATAAGA 57.445 36.000 0.00 0.00 35.30 2.10
4974 5450 8.532819 ACTACTCCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
4975 5451 8.431910 ACTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
4976 5452 9.710818 ATACTACTCCCTCTGTTCACTTTTATA 57.289 33.333 0.00 0.00 0.00 0.98
4977 5453 6.936968 ACTACTCCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
4978 5454 8.431910 AATACTACTCCCTCTGTTCACTTTTA 57.568 34.615 0.00 0.00 0.00 1.52
4979 5455 6.936968 ATACTACTCCCTCTGTTCACTTTT 57.063 37.500 0.00 0.00 0.00 2.27
4980 5456 6.936968 AATACTACTCCCTCTGTTCACTTT 57.063 37.500 0.00 0.00 0.00 2.66
4981 5457 6.936968 AAATACTACTCCCTCTGTTCACTT 57.063 37.500 0.00 0.00 0.00 3.16
4982 5458 6.070710 GGAAAATACTACTCCCTCTGTTCACT 60.071 42.308 0.00 0.00 0.00 3.41
4983 5459 6.107343 GGAAAATACTACTCCCTCTGTTCAC 58.893 44.000 0.00 0.00 0.00 3.18
4984 5460 5.783360 TGGAAAATACTACTCCCTCTGTTCA 59.217 40.000 0.00 0.00 0.00 3.18
4985 5461 6.295719 TGGAAAATACTACTCCCTCTGTTC 57.704 41.667 0.00 0.00 0.00 3.18
4986 5462 6.893020 ATGGAAAATACTACTCCCTCTGTT 57.107 37.500 0.00 0.00 0.00 3.16
4987 5463 9.845214 ATATATGGAAAATACTACTCCCTCTGT 57.155 33.333 0.00 0.00 0.00 3.41
5007 5483 8.713737 ATCATCAGAACGTGATCCAATATATG 57.286 34.615 0.00 0.00 44.73 1.78
5008 5484 9.376075 GAATCATCAGAACGTGATCCAATATAT 57.624 33.333 0.00 0.00 44.73 0.86
5021 5497 7.466805 TCTGCATTAAAAGAATCATCAGAACG 58.533 34.615 0.00 0.00 0.00 3.95
5036 5512 7.446931 TGTTCTTGTTGGAGTATCTGCATTAAA 59.553 33.333 0.00 0.00 30.73 1.52
5143 5627 6.599445 AGAGCATAGATGGCAGAAGTAAAAT 58.401 36.000 0.00 0.00 0.00 1.82
5171 5655 5.055265 TGTAGACCATCCAAACCAAGAAA 57.945 39.130 0.00 0.00 0.00 2.52
5173 5657 4.927267 ATGTAGACCATCCAAACCAAGA 57.073 40.909 0.00 0.00 0.00 3.02
5203 5687 6.208797 CCAGTAAGGAGTCCATCGATTATGTA 59.791 42.308 12.86 0.00 41.22 2.29
5248 5732 2.417719 CCTCGTGGGAAGAAAGACTTG 58.582 52.381 0.00 0.00 39.13 3.16
5335 5821 2.815647 GGGAGCCGAGCAACTTCG 60.816 66.667 0.00 0.00 40.18 3.79
5359 5845 4.575645 ACGAATACTTTTGTTCCGTTTCCA 59.424 37.500 0.00 0.00 30.70 3.53
5456 5942 2.236395 CTGTACACGAAAAGGGGGAGAT 59.764 50.000 0.00 0.00 0.00 2.75
5492 5978 9.443323 TTGTTCGAACAGATAATATTCCAAAGA 57.557 29.630 28.21 7.13 40.50 2.52
5515 6001 5.023533 TCTCTTGCTACAAGACAGTTTGT 57.976 39.130 5.94 6.42 43.34 2.83
5552 6215 5.885912 GGCTATTCCTCCAGTTGTGAAAATA 59.114 40.000 0.00 0.00 0.00 1.40
5557 6220 2.237143 CTGGCTATTCCTCCAGTTGTGA 59.763 50.000 0.35 0.00 43.66 3.58
5574 6237 4.154375 GCCTAGAAGTAACTTGTTTCTGGC 59.846 45.833 0.00 9.46 37.64 4.85
5619 6282 9.646522 AGCAACCATATTCCTAATTCTTAATGT 57.353 29.630 0.00 0.00 0.00 2.71
5679 6342 7.495606 GGAATAACCAGCCAAATCAAAATTAGG 59.504 37.037 0.00 0.00 38.79 2.69
5707 6370 0.953727 GGTTACCGGTTTCCCACAAC 59.046 55.000 15.04 9.24 0.00 3.32
5752 6416 9.307121 CTCACTAGGTTGTCTCAACTATATTTG 57.693 37.037 11.48 0.00 0.00 2.32
5755 6419 6.551601 CCCTCACTAGGTTGTCTCAACTATAT 59.448 42.308 11.48 0.00 41.89 0.86
5756 6420 5.892119 CCCTCACTAGGTTGTCTCAACTATA 59.108 44.000 11.48 5.63 41.89 1.31
5757 6421 4.712337 CCCTCACTAGGTTGTCTCAACTAT 59.288 45.833 11.48 4.91 41.89 2.12
5767 6431 1.079127 CGCCACCCTCACTAGGTTG 60.079 63.158 0.00 0.00 41.89 3.77
5770 6434 2.363795 TCCGCCACCCTCACTAGG 60.364 66.667 0.00 0.00 43.25 3.02
5829 6565 2.082231 CAGGAAGCTCATGGTTGTCTG 58.918 52.381 0.00 0.00 33.64 3.51
5858 6603 0.944386 CCCACCTGTGTTCAAGTTCG 59.056 55.000 0.00 0.00 0.00 3.95
5893 6639 2.813042 GCTCAGTCAGCGAGGTGC 60.813 66.667 0.00 0.00 46.98 5.01
5903 6649 1.342819 ACTGGAGAGTGTTGCTCAGTC 59.657 52.381 8.52 8.52 46.47 3.51
5914 6660 2.024751 GGGAGGTAGAGAACTGGAGAGT 60.025 54.545 0.00 0.00 0.00 3.24
5953 6699 6.073548 CGGCCATATCTCAACTATTTCACTTC 60.074 42.308 2.24 0.00 0.00 3.01
5988 6735 4.880120 CACATATCATCAGGTTTCACAGCT 59.120 41.667 0.00 0.00 0.00 4.24
5991 6738 4.943093 CACCACATATCATCAGGTTTCACA 59.057 41.667 0.00 0.00 0.00 3.58
6032 6787 4.053295 TGTCGGAACTAAAACGAAAGGAG 58.947 43.478 0.00 0.00 38.46 3.69
6033 6788 4.057406 TGTCGGAACTAAAACGAAAGGA 57.943 40.909 0.00 0.00 38.46 3.36
6058 6813 1.649321 CCAGATAGCCAGCCCTGATA 58.351 55.000 0.00 0.00 0.00 2.15
6114 6870 5.450592 TTGATGCAGCTTTGATGTGTTAA 57.549 34.783 2.53 0.00 0.00 2.01
6133 6890 5.946942 AGTTTCAGGAGCTCTATCATTGA 57.053 39.130 14.64 5.71 0.00 2.57
6167 6924 1.967066 AGGTCAGTGAGGAAGACAGTG 59.033 52.381 0.00 0.00 39.26 3.66
6228 6985 5.184864 CCCAAAAGCAATACCACATAGTTGA 59.815 40.000 0.00 0.00 0.00 3.18
6312 7069 1.135859 CGCCTGTCAAGATCAAAGTGC 60.136 52.381 0.00 0.00 0.00 4.40
6331 7088 4.806247 GGTAGACAGGAATTCAATCAGTCG 59.194 45.833 7.93 0.00 33.63 4.18
6351 7108 4.669700 TCTGGCTGACTTACAACTAGGTA 58.330 43.478 0.00 0.00 0.00 3.08
6374 7131 8.463930 AAATGAAAAGGACAGTGAAAGTCATA 57.536 30.769 0.00 0.00 37.74 2.15
6451 7208 2.319025 TGACACACCTGGGATAGACA 57.681 50.000 0.00 0.00 0.00 3.41
6467 7224 4.917415 CCGAATTGTCACCTTCAATTTGAC 59.083 41.667 15.74 1.06 43.64 3.18
6493 7250 5.707298 CACAACTGTCTGGTCCATTTATCTT 59.293 40.000 0.00 0.00 0.00 2.40
6540 7297 5.287035 CGAATAAAACAAGCTTGAAGATGCC 59.713 40.000 32.50 14.44 0.00 4.40
6579 7339 1.311059 GGCCTTGGATTGGATGGGT 59.689 57.895 0.00 0.00 0.00 4.51
6633 7393 6.467677 AGTGACAGGTCGTAGTAACTAGTAA 58.532 40.000 0.00 0.00 0.00 2.24
6634 7394 6.042638 AGTGACAGGTCGTAGTAACTAGTA 57.957 41.667 0.00 0.00 0.00 1.82
6635 7395 4.904241 AGTGACAGGTCGTAGTAACTAGT 58.096 43.478 0.00 0.00 0.00 2.57
6636 7396 5.642919 AGAAGTGACAGGTCGTAGTAACTAG 59.357 44.000 0.00 0.00 0.00 2.57
6637 7397 5.555017 AGAAGTGACAGGTCGTAGTAACTA 58.445 41.667 0.00 0.00 0.00 2.24
6638 7398 4.396522 AGAAGTGACAGGTCGTAGTAACT 58.603 43.478 0.00 0.00 0.00 2.24
6639 7399 4.762956 AGAAGTGACAGGTCGTAGTAAC 57.237 45.455 0.00 0.00 0.00 2.50
6649 7409 4.645535 TCCAGAATTCAAGAAGTGACAGG 58.354 43.478 8.44 0.00 35.39 4.00
6673 7433 4.816126 AGATCTATACAGGGGCAGTAACA 58.184 43.478 0.00 0.00 0.00 2.41
6683 7443 7.276658 GGCGAATCATTACAAGATCTATACAGG 59.723 40.741 0.00 0.00 0.00 4.00
6689 7449 5.009710 AGTCGGCGAATCATTACAAGATCTA 59.990 40.000 12.92 0.00 0.00 1.98
6707 7467 1.009829 CAGTGGAAAGCATAGTCGGC 58.990 55.000 0.00 0.00 0.00 5.54
6721 7481 1.406069 GGTGTCTGGATACTGCAGTGG 60.406 57.143 29.57 13.24 37.12 4.00
6753 7521 0.464036 TTCCGAGACACACTGCACTT 59.536 50.000 0.00 0.00 0.00 3.16
6756 7524 1.872952 CAAATTCCGAGACACACTGCA 59.127 47.619 0.00 0.00 0.00 4.41
6764 7534 4.201724 CGAGATCCAAACAAATTCCGAGAC 60.202 45.833 0.00 0.00 0.00 3.36
6765 7535 3.932710 CGAGATCCAAACAAATTCCGAGA 59.067 43.478 0.00 0.00 0.00 4.04
6778 7548 1.613255 GGAAAAGGCACCGAGATCCAA 60.613 52.381 0.00 0.00 0.00 3.53
6789 7559 1.543802 CATTACCGCTTGGAAAAGGCA 59.456 47.619 0.00 0.00 36.26 4.75
6790 7560 1.135112 CCATTACCGCTTGGAAAAGGC 60.135 52.381 0.00 0.00 34.81 4.35
6845 7615 1.308998 GTGGCAGATAATGGAACGGG 58.691 55.000 0.00 0.00 0.00 5.28
6848 7618 3.360249 GCATGTGGCAGATAATGGAAC 57.640 47.619 0.00 0.00 43.97 3.62
6869 7639 3.788333 ATTCACATGGAAAAGCATCGG 57.212 42.857 0.00 0.00 39.39 4.18
6870 7640 4.560035 GTGAATTCACATGGAAAAGCATCG 59.440 41.667 29.43 0.00 45.75 3.84
6974 7744 0.040499 TTCCCCCACTTACCAATGGC 59.960 55.000 0.00 0.00 34.37 4.40
6981 7751 1.426215 TCCCACTTTTCCCCCACTTAC 59.574 52.381 0.00 0.00 0.00 2.34
6997 7767 1.727062 ACAATGCCACCAAAATCCCA 58.273 45.000 0.00 0.00 0.00 4.37
7040 7810 0.916358 CCACCACCAATCCCTCCTCT 60.916 60.000 0.00 0.00 0.00 3.69
7041 7811 1.609783 CCACCACCAATCCCTCCTC 59.390 63.158 0.00 0.00 0.00 3.71
7072 7842 4.766891 CCCTTCTTTTGAATAACCAGCAGA 59.233 41.667 0.00 0.00 37.85 4.26
7261 8032 2.159379 CGGCCAAAGCTAAAAAGCTAGG 60.159 50.000 2.24 12.13 45.54 3.02
7298 8069 9.687210 CTGCTGCAAACATATGAAAACATATAT 57.313 29.630 10.38 0.00 0.00 0.86
7299 8070 8.901793 TCTGCTGCAAACATATGAAAACATATA 58.098 29.630 10.38 0.00 0.00 0.86
7300 8071 7.774134 TCTGCTGCAAACATATGAAAACATAT 58.226 30.769 10.38 0.00 0.00 1.78
7301 8072 7.094248 ACTCTGCTGCAAACATATGAAAACATA 60.094 33.333 10.38 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.