Multiple sequence alignment - TraesCS3A01G312400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G312400 chr3A 100.000 2381 0 0 324 2704 552306007 552308387 0.000000e+00 4397.0
1 TraesCS3A01G312400 chr3A 83.813 278 42 3 2105 2381 23631559 23631284 7.430000e-66 261.0
2 TraesCS3A01G312400 chr3A 100.000 56 0 0 1 56 552305684 552305739 1.320000e-18 104.0
3 TraesCS3A01G312400 chr3D 91.649 1856 110 20 663 2489 104016218 104014379 0.000000e+00 2527.0
4 TraesCS3A01G312400 chr3D 93.182 176 11 1 2504 2679 104014391 104014217 9.610000e-65 257.0
5 TraesCS3A01G312400 chr3D 81.818 99 18 0 324 422 445274332 445274430 1.730000e-12 84.2
6 TraesCS3A01G312400 chr3B 89.734 1841 125 37 663 2486 154606558 154604765 0.000000e+00 2294.0
7 TraesCS3A01G312400 chr5B 85.441 261 36 2 2122 2381 27825300 27825041 1.230000e-68 270.0
8 TraesCS3A01G312400 chr5D 85.385 260 37 1 2122 2381 66973793 66974051 4.440000e-68 268.0
9 TraesCS3A01G312400 chr5D 85.171 263 36 3 2120 2381 177985784 177985524 1.600000e-67 267.0
10 TraesCS3A01G312400 chr6A 84.906 265 39 1 2121 2384 129765210 129764946 1.600000e-67 267.0
11 TraesCS3A01G312400 chr6A 84.586 266 38 3 2118 2381 465348853 465349117 7.430000e-66 261.0
12 TraesCS3A01G312400 chr7D 84.733 262 39 1 2120 2381 270700361 270700101 7.430000e-66 261.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G312400 chr3A 552305684 552308387 2703 False 2250.5 4397 100.0000 1 2704 2 chr3A.!!$F1 2703
1 TraesCS3A01G312400 chr3D 104014217 104016218 2001 True 1392.0 2527 92.4155 663 2679 2 chr3D.!!$R1 2016
2 TraesCS3A01G312400 chr3B 154604765 154606558 1793 True 2294.0 2294 89.7340 663 2486 1 chr3B.!!$R1 1823

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.029567 CCACTATCTGTCCGAGCGTC 59.97 60.0 0.00 0.0 0.00 5.19 F
482 483 0.030369 AGTCGCGTCTCACGAAGTTT 59.97 50.0 5.77 0.0 46.05 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1196 1218 0.527113 CCATGTTGCTCGCCATTTCA 59.473 50.000 0.00 0.00 0.0 2.69 R
1855 1896 1.202417 AGGCTACGTTCACATCGATGG 60.202 52.381 28.09 17.13 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.709213 AGTCCAGCTCAAAGATGAAGC 58.291 47.619 0.00 0.00 32.38 3.86
23 24 2.039480 AGTCCAGCTCAAAGATGAAGCA 59.961 45.455 0.00 0.00 32.38 3.91
24 25 2.161211 GTCCAGCTCAAAGATGAAGCAC 59.839 50.000 0.00 0.00 32.38 4.40
25 26 1.471684 CCAGCTCAAAGATGAAGCACC 59.528 52.381 0.00 0.00 32.38 5.01
26 27 2.156917 CAGCTCAAAGATGAAGCACCA 58.843 47.619 0.00 0.00 32.38 4.17
27 28 2.095364 CAGCTCAAAGATGAAGCACCAC 60.095 50.000 0.00 0.00 32.38 4.16
28 29 2.157738 GCTCAAAGATGAAGCACCACT 58.842 47.619 0.00 0.00 34.49 4.00
29 30 3.008375 AGCTCAAAGATGAAGCACCACTA 59.992 43.478 0.00 0.00 34.49 2.74
30 31 3.944015 GCTCAAAGATGAAGCACCACTAT 59.056 43.478 0.00 0.00 34.49 2.12
31 32 4.034975 GCTCAAAGATGAAGCACCACTATC 59.965 45.833 0.00 0.00 34.49 2.08
32 33 5.426504 CTCAAAGATGAAGCACCACTATCT 58.573 41.667 0.00 0.00 34.49 1.98
33 34 5.181009 TCAAAGATGAAGCACCACTATCTG 58.819 41.667 0.00 0.00 30.99 2.90
34 35 4.833478 AAGATGAAGCACCACTATCTGT 57.167 40.909 0.00 0.00 0.00 3.41
35 36 4.399004 AGATGAAGCACCACTATCTGTC 57.601 45.455 0.00 0.00 0.00 3.51
36 37 3.133721 AGATGAAGCACCACTATCTGTCC 59.866 47.826 0.00 0.00 0.00 4.02
37 38 1.204704 TGAAGCACCACTATCTGTCCG 59.795 52.381 0.00 0.00 0.00 4.79
38 39 1.476891 GAAGCACCACTATCTGTCCGA 59.523 52.381 0.00 0.00 0.00 4.55
39 40 1.107114 AGCACCACTATCTGTCCGAG 58.893 55.000 0.00 0.00 0.00 4.63
40 41 0.528684 GCACCACTATCTGTCCGAGC 60.529 60.000 0.00 0.00 0.00 5.03
41 42 0.248661 CACCACTATCTGTCCGAGCG 60.249 60.000 0.00 0.00 0.00 5.03
42 43 0.680280 ACCACTATCTGTCCGAGCGT 60.680 55.000 0.00 0.00 0.00 5.07
43 44 0.029567 CCACTATCTGTCCGAGCGTC 59.970 60.000 0.00 0.00 0.00 5.19
44 45 0.733150 CACTATCTGTCCGAGCGTCA 59.267 55.000 0.00 0.00 0.00 4.35
45 46 1.335182 CACTATCTGTCCGAGCGTCAT 59.665 52.381 0.00 0.00 0.00 3.06
46 47 1.604755 ACTATCTGTCCGAGCGTCATC 59.395 52.381 0.00 0.00 0.00 2.92
47 48 0.952280 TATCTGTCCGAGCGTCATCC 59.048 55.000 0.00 0.00 0.00 3.51
48 49 1.739338 ATCTGTCCGAGCGTCATCCC 61.739 60.000 0.00 0.00 0.00 3.85
49 50 3.432051 CTGTCCGAGCGTCATCCCC 62.432 68.421 0.00 0.00 0.00 4.81
50 51 3.148279 GTCCGAGCGTCATCCCCT 61.148 66.667 0.00 0.00 0.00 4.79
51 52 3.147595 TCCGAGCGTCATCCCCTG 61.148 66.667 0.00 0.00 0.00 4.45
52 53 4.899239 CCGAGCGTCATCCCCTGC 62.899 72.222 0.00 0.00 0.00 4.85
53 54 4.147449 CGAGCGTCATCCCCTGCA 62.147 66.667 0.00 0.00 0.00 4.41
54 55 2.268920 GAGCGTCATCCCCTGCAA 59.731 61.111 0.00 0.00 0.00 4.08
55 56 1.817099 GAGCGTCATCCCCTGCAAG 60.817 63.158 0.00 0.00 0.00 4.01
367 368 3.171388 GATCCCCGTCCCTGCCAT 61.171 66.667 0.00 0.00 0.00 4.40
368 369 3.171388 ATCCCCGTCCCTGCCATC 61.171 66.667 0.00 0.00 0.00 3.51
380 381 4.101448 GCCATCGGCCACCTGAGT 62.101 66.667 2.24 0.00 44.06 3.41
381 382 2.124983 CCATCGGCCACCTGAGTG 60.125 66.667 2.24 0.00 44.12 3.51
391 392 4.192000 CCTGAGTGGTAAGCAGCG 57.808 61.111 0.00 0.00 0.00 5.18
392 393 1.448540 CCTGAGTGGTAAGCAGCGG 60.449 63.158 0.00 0.00 0.00 5.52
393 394 1.448540 CTGAGTGGTAAGCAGCGGG 60.449 63.158 0.00 0.00 0.00 6.13
394 395 2.125106 GAGTGGTAAGCAGCGGGG 60.125 66.667 0.00 0.00 0.00 5.73
395 396 2.606519 AGTGGTAAGCAGCGGGGA 60.607 61.111 0.00 0.00 0.00 4.81
396 397 2.125106 GTGGTAAGCAGCGGGGAG 60.125 66.667 0.00 0.00 0.00 4.30
397 398 3.399181 TGGTAAGCAGCGGGGAGG 61.399 66.667 0.00 0.00 0.00 4.30
398 399 3.400054 GGTAAGCAGCGGGGAGGT 61.400 66.667 0.00 0.00 0.00 3.85
404 405 3.866582 CAGCGGGGAGGTGGATCC 61.867 72.222 4.20 4.20 44.14 3.36
405 406 4.414956 AGCGGGGAGGTGGATCCA 62.415 66.667 11.44 11.44 41.52 3.41
406 407 3.171388 GCGGGGAGGTGGATCCAT 61.171 66.667 19.62 1.68 41.52 3.41
407 408 2.757124 GCGGGGAGGTGGATCCATT 61.757 63.158 19.62 9.74 41.52 3.16
408 409 1.149174 CGGGGAGGTGGATCCATTG 59.851 63.158 19.62 0.00 41.52 2.82
409 410 1.538666 GGGGAGGTGGATCCATTGG 59.461 63.158 19.62 0.00 41.52 3.16
410 411 1.152673 GGGAGGTGGATCCATTGGC 60.153 63.158 19.62 4.42 41.52 4.52
411 412 1.649271 GGGAGGTGGATCCATTGGCT 61.649 60.000 19.62 0.00 41.52 4.75
412 413 0.179006 GGAGGTGGATCCATTGGCTC 60.179 60.000 19.62 3.17 39.34 4.70
413 414 0.533755 GAGGTGGATCCATTGGCTCG 60.534 60.000 19.62 0.00 39.02 5.03
414 415 2.189499 GGTGGATCCATTGGCTCGC 61.189 63.158 19.62 1.52 35.97 5.03
415 416 1.153086 GTGGATCCATTGGCTCGCT 60.153 57.895 19.62 0.00 0.00 4.93
416 417 1.153107 TGGATCCATTGGCTCGCTG 60.153 57.895 11.44 0.00 0.00 5.18
417 418 1.146930 GGATCCATTGGCTCGCTGA 59.853 57.895 6.95 0.00 0.00 4.26
418 419 1.162800 GGATCCATTGGCTCGCTGAC 61.163 60.000 6.95 0.00 0.00 3.51
419 420 1.493950 GATCCATTGGCTCGCTGACG 61.494 60.000 0.00 0.00 42.01 4.35
431 432 4.606071 CTGACGAAGCCAAGAGGG 57.394 61.111 0.00 0.00 40.85 4.30
432 433 1.078848 CTGACGAAGCCAAGAGGGG 60.079 63.158 0.00 0.00 37.04 4.79
433 434 1.535444 TGACGAAGCCAAGAGGGGA 60.535 57.895 0.00 0.00 37.04 4.81
434 435 1.079057 GACGAAGCCAAGAGGGGAC 60.079 63.158 0.00 0.00 37.04 4.46
447 448 4.162690 GGGACCTAGGCGGCACAG 62.163 72.222 13.08 7.75 35.61 3.66
448 449 3.391382 GGACCTAGGCGGCACAGT 61.391 66.667 13.08 4.38 35.61 3.55
449 450 2.184579 GACCTAGGCGGCACAGTC 59.815 66.667 13.08 10.60 35.61 3.51
450 451 2.603473 ACCTAGGCGGCACAGTCA 60.603 61.111 13.08 0.00 35.61 3.41
451 452 2.125512 CCTAGGCGGCACAGTCAC 60.126 66.667 13.08 0.00 0.00 3.67
452 453 2.656646 CTAGGCGGCACAGTCACA 59.343 61.111 13.08 0.00 0.00 3.58
453 454 1.219124 CTAGGCGGCACAGTCACAT 59.781 57.895 13.08 0.00 0.00 3.21
454 455 1.079197 TAGGCGGCACAGTCACATG 60.079 57.895 13.08 0.00 0.00 3.21
455 456 1.826340 TAGGCGGCACAGTCACATGT 61.826 55.000 13.08 0.00 0.00 3.21
463 464 2.849942 CACAGTCACATGTGGGAAAGA 58.150 47.619 25.16 2.02 45.53 2.52
464 465 2.810274 CACAGTCACATGTGGGAAAGAG 59.190 50.000 25.16 10.93 45.53 2.85
465 466 2.439507 ACAGTCACATGTGGGAAAGAGT 59.560 45.455 25.16 11.51 30.46 3.24
466 467 3.070018 CAGTCACATGTGGGAAAGAGTC 58.930 50.000 25.16 5.65 0.00 3.36
467 468 2.069273 GTCACATGTGGGAAAGAGTCG 58.931 52.381 25.16 0.00 0.00 4.18
468 469 0.798776 CACATGTGGGAAAGAGTCGC 59.201 55.000 18.51 0.00 39.63 5.19
469 470 0.670546 ACATGTGGGAAAGAGTCGCG 60.671 55.000 0.00 0.00 42.09 5.87
470 471 0.670546 CATGTGGGAAAGAGTCGCGT 60.671 55.000 5.77 0.00 42.09 6.01
471 472 0.389948 ATGTGGGAAAGAGTCGCGTC 60.390 55.000 5.77 0.00 42.09 5.19
472 473 1.289380 GTGGGAAAGAGTCGCGTCT 59.711 57.895 5.33 5.33 42.09 4.18
473 474 0.733223 GTGGGAAAGAGTCGCGTCTC 60.733 60.000 23.12 23.12 42.09 3.36
474 475 1.176619 TGGGAAAGAGTCGCGTCTCA 61.177 55.000 29.87 12.90 42.09 3.27
475 476 0.733223 GGGAAAGAGTCGCGTCTCAC 60.733 60.000 29.87 20.71 36.97 3.51
476 477 1.066114 GGAAAGAGTCGCGTCTCACG 61.066 60.000 29.87 0.00 45.88 4.35
477 478 0.110328 GAAAGAGTCGCGTCTCACGA 60.110 55.000 29.87 0.00 46.05 4.35
478 479 0.309922 AAAGAGTCGCGTCTCACGAA 59.690 50.000 29.87 0.00 46.05 3.85
479 480 0.110147 AAGAGTCGCGTCTCACGAAG 60.110 55.000 29.87 0.00 46.05 3.79
480 481 1.207085 GAGTCGCGTCTCACGAAGT 59.793 57.895 25.08 0.00 46.05 3.01
481 482 0.385723 GAGTCGCGTCTCACGAAGTT 60.386 55.000 25.08 0.00 46.05 2.66
482 483 0.030369 AGTCGCGTCTCACGAAGTTT 59.970 50.000 5.77 0.00 46.05 2.66
483 484 0.430110 GTCGCGTCTCACGAAGTTTC 59.570 55.000 5.77 0.00 46.05 2.78
484 485 0.662374 TCGCGTCTCACGAAGTTTCC 60.662 55.000 5.77 0.00 46.05 3.13
485 486 1.615107 CGCGTCTCACGAAGTTTCCC 61.615 60.000 0.00 0.00 46.05 3.97
486 487 0.319641 GCGTCTCACGAAGTTTCCCT 60.320 55.000 0.00 0.00 46.05 4.20
487 488 1.872653 GCGTCTCACGAAGTTTCCCTT 60.873 52.381 0.00 0.00 46.05 3.95
488 489 2.480845 CGTCTCACGAAGTTTCCCTTT 58.519 47.619 0.00 0.00 46.05 3.11
489 490 2.221055 CGTCTCACGAAGTTTCCCTTTG 59.779 50.000 0.00 0.00 46.05 2.77
490 491 2.031944 GTCTCACGAAGTTTCCCTTTGC 60.032 50.000 0.00 0.00 41.61 3.68
491 492 1.946768 CTCACGAAGTTTCCCTTTGCA 59.053 47.619 0.00 0.00 41.61 4.08
492 493 2.554032 CTCACGAAGTTTCCCTTTGCAT 59.446 45.455 0.00 0.00 41.61 3.96
493 494 2.552315 TCACGAAGTTTCCCTTTGCATC 59.448 45.455 0.00 0.00 41.61 3.91
494 495 1.886542 ACGAAGTTTCCCTTTGCATCC 59.113 47.619 0.00 0.00 37.78 3.51
495 496 2.162681 CGAAGTTTCCCTTTGCATCCT 58.837 47.619 0.00 0.00 32.03 3.24
496 497 2.558359 CGAAGTTTCCCTTTGCATCCTT 59.442 45.455 0.00 0.00 32.03 3.36
497 498 3.366374 CGAAGTTTCCCTTTGCATCCTTC 60.366 47.826 0.00 0.00 32.03 3.46
498 499 3.532641 AGTTTCCCTTTGCATCCTTCT 57.467 42.857 0.00 0.00 0.00 2.85
499 500 3.425659 AGTTTCCCTTTGCATCCTTCTC 58.574 45.455 0.00 0.00 0.00 2.87
500 501 2.113860 TTCCCTTTGCATCCTTCTCG 57.886 50.000 0.00 0.00 0.00 4.04
501 502 0.253044 TCCCTTTGCATCCTTCTCGG 59.747 55.000 0.00 0.00 0.00 4.63
502 503 1.379642 CCCTTTGCATCCTTCTCGGC 61.380 60.000 0.00 0.00 0.00 5.54
503 504 1.379642 CCTTTGCATCCTTCTCGGCC 61.380 60.000 0.00 0.00 0.00 6.13
504 505 0.393537 CTTTGCATCCTTCTCGGCCT 60.394 55.000 0.00 0.00 0.00 5.19
505 506 0.392998 TTTGCATCCTTCTCGGCCTC 60.393 55.000 0.00 0.00 0.00 4.70
506 507 1.552799 TTGCATCCTTCTCGGCCTCA 61.553 55.000 0.00 0.00 0.00 3.86
507 508 1.522580 GCATCCTTCTCGGCCTCAC 60.523 63.158 0.00 0.00 0.00 3.51
508 509 1.900351 CATCCTTCTCGGCCTCACA 59.100 57.895 0.00 0.00 0.00 3.58
509 510 0.467384 CATCCTTCTCGGCCTCACAT 59.533 55.000 0.00 0.00 0.00 3.21
510 511 1.134280 CATCCTTCTCGGCCTCACATT 60.134 52.381 0.00 0.00 0.00 2.71
511 512 0.250234 TCCTTCTCGGCCTCACATTG 59.750 55.000 0.00 0.00 0.00 2.82
512 513 1.372087 CCTTCTCGGCCTCACATTGC 61.372 60.000 0.00 0.00 0.00 3.56
513 514 0.674581 CTTCTCGGCCTCACATTGCA 60.675 55.000 0.00 0.00 0.00 4.08
514 515 0.035152 TTCTCGGCCTCACATTGCAT 60.035 50.000 0.00 0.00 0.00 3.96
515 516 0.745486 TCTCGGCCTCACATTGCATG 60.745 55.000 0.00 0.00 0.00 4.06
516 517 1.721664 CTCGGCCTCACATTGCATGG 61.722 60.000 0.00 0.00 33.60 3.66
517 518 1.750018 CGGCCTCACATTGCATGGA 60.750 57.895 0.00 0.00 33.60 3.41
518 519 1.314534 CGGCCTCACATTGCATGGAA 61.315 55.000 0.79 0.79 33.60 3.53
519 520 0.174162 GGCCTCACATTGCATGGAAC 59.826 55.000 0.12 0.00 33.60 3.62
520 521 0.174162 GCCTCACATTGCATGGAACC 59.826 55.000 0.12 0.00 33.60 3.62
521 522 0.819582 CCTCACATTGCATGGAACCC 59.180 55.000 0.12 0.00 33.60 4.11
522 523 1.617804 CCTCACATTGCATGGAACCCT 60.618 52.381 0.12 0.00 33.60 4.34
523 524 2.173519 CTCACATTGCATGGAACCCTT 58.826 47.619 0.12 0.00 33.60 3.95
524 525 1.894466 TCACATTGCATGGAACCCTTG 59.106 47.619 0.12 0.00 33.60 3.61
525 526 1.066716 CACATTGCATGGAACCCTTGG 60.067 52.381 0.12 0.00 33.60 3.61
526 527 1.269012 CATTGCATGGAACCCTTGGT 58.731 50.000 0.12 0.00 37.65 3.67
527 528 2.225242 ACATTGCATGGAACCCTTGGTA 60.225 45.455 0.12 0.00 32.16 3.25
528 529 1.917872 TTGCATGGAACCCTTGGTAC 58.082 50.000 0.00 0.00 33.12 3.34
529 530 0.774276 TGCATGGAACCCTTGGTACA 59.226 50.000 0.00 0.00 33.12 2.90
530 531 1.357420 TGCATGGAACCCTTGGTACAT 59.643 47.619 0.00 0.00 39.30 2.29
531 532 1.750778 GCATGGAACCCTTGGTACATG 59.249 52.381 18.87 18.87 45.53 3.21
532 533 2.620367 GCATGGAACCCTTGGTACATGA 60.620 50.000 23.79 0.00 45.57 3.07
533 534 3.902218 CATGGAACCCTTGGTACATGAT 58.098 45.455 18.59 0.00 45.57 2.45
534 535 4.280819 CATGGAACCCTTGGTACATGATT 58.719 43.478 18.59 0.00 45.57 2.57
535 536 3.963129 TGGAACCCTTGGTACATGATTC 58.037 45.455 0.00 0.00 39.30 2.52
536 537 3.332187 TGGAACCCTTGGTACATGATTCA 59.668 43.478 0.00 0.00 39.30 2.57
537 538 3.694566 GGAACCCTTGGTACATGATTCAC 59.305 47.826 0.00 0.00 39.30 3.18
538 539 4.331968 GAACCCTTGGTACATGATTCACA 58.668 43.478 0.00 0.00 39.30 3.58
539 540 3.955471 ACCCTTGGTACATGATTCACAG 58.045 45.455 0.00 0.00 39.30 3.66
540 541 3.330701 ACCCTTGGTACATGATTCACAGT 59.669 43.478 0.00 0.00 39.30 3.55
541 542 4.202567 ACCCTTGGTACATGATTCACAGTT 60.203 41.667 0.00 0.00 39.30 3.16
542 543 4.766891 CCCTTGGTACATGATTCACAGTTT 59.233 41.667 0.00 0.00 39.30 2.66
543 544 5.106157 CCCTTGGTACATGATTCACAGTTTC 60.106 44.000 0.00 0.00 39.30 2.78
544 545 5.390885 CCTTGGTACATGATTCACAGTTTCG 60.391 44.000 0.00 0.00 39.30 3.46
545 546 3.435327 TGGTACATGATTCACAGTTTCGC 59.565 43.478 0.00 0.00 0.00 4.70
546 547 2.880822 ACATGATTCACAGTTTCGCG 57.119 45.000 0.00 0.00 0.00 5.87
547 548 1.135972 ACATGATTCACAGTTTCGCGC 60.136 47.619 0.00 0.00 0.00 6.86
548 549 0.447801 ATGATTCACAGTTTCGCGCC 59.552 50.000 0.00 0.00 0.00 6.53
549 550 0.882484 TGATTCACAGTTTCGCGCCA 60.882 50.000 0.00 0.00 0.00 5.69
550 551 0.447801 GATTCACAGTTTCGCGCCAT 59.552 50.000 0.00 0.00 0.00 4.40
551 552 1.663643 GATTCACAGTTTCGCGCCATA 59.336 47.619 0.00 0.00 0.00 2.74
552 553 1.514003 TTCACAGTTTCGCGCCATAA 58.486 45.000 0.00 0.00 0.00 1.90
553 554 0.793861 TCACAGTTTCGCGCCATAAC 59.206 50.000 0.00 3.67 0.00 1.89
554 555 0.796312 CACAGTTTCGCGCCATAACT 59.204 50.000 0.00 6.21 32.60 2.24
555 556 1.076332 ACAGTTTCGCGCCATAACTC 58.924 50.000 0.00 0.00 30.08 3.01
556 557 1.337823 ACAGTTTCGCGCCATAACTCT 60.338 47.619 0.00 0.94 30.08 3.24
557 558 1.324736 CAGTTTCGCGCCATAACTCTC 59.675 52.381 0.00 0.00 30.08 3.20
558 559 1.204941 AGTTTCGCGCCATAACTCTCT 59.795 47.619 0.00 0.00 0.00 3.10
559 560 1.588861 GTTTCGCGCCATAACTCTCTC 59.411 52.381 0.00 0.00 0.00 3.20
560 561 1.103803 TTCGCGCCATAACTCTCTCT 58.896 50.000 0.00 0.00 0.00 3.10
561 562 1.963172 TCGCGCCATAACTCTCTCTA 58.037 50.000 0.00 0.00 0.00 2.43
562 563 2.505405 TCGCGCCATAACTCTCTCTAT 58.495 47.619 0.00 0.00 0.00 1.98
563 564 2.484651 TCGCGCCATAACTCTCTCTATC 59.515 50.000 0.00 0.00 0.00 2.08
564 565 2.226674 CGCGCCATAACTCTCTCTATCA 59.773 50.000 0.00 0.00 0.00 2.15
565 566 3.119673 CGCGCCATAACTCTCTCTATCAT 60.120 47.826 0.00 0.00 0.00 2.45
566 567 4.172505 GCGCCATAACTCTCTCTATCATG 58.827 47.826 0.00 0.00 0.00 3.07
567 568 4.082517 GCGCCATAACTCTCTCTATCATGA 60.083 45.833 0.00 0.00 0.00 3.07
568 569 5.565637 GCGCCATAACTCTCTCTATCATGAA 60.566 44.000 0.00 0.00 0.00 2.57
569 570 6.629128 CGCCATAACTCTCTCTATCATGAAT 58.371 40.000 0.00 0.00 0.00 2.57
570 571 7.629437 GCGCCATAACTCTCTCTATCATGAATA 60.629 40.741 0.00 0.00 0.00 1.75
571 572 8.246871 CGCCATAACTCTCTCTATCATGAATAA 58.753 37.037 0.00 0.00 0.00 1.40
572 573 9.585099 GCCATAACTCTCTCTATCATGAATAAG 57.415 37.037 0.00 0.00 0.00 1.73
579 580 9.524106 CTCTCTCTATCATGAATAAGATGATGC 57.476 37.037 0.00 0.00 40.15 3.91
580 581 9.032624 TCTCTCTATCATGAATAAGATGATGCA 57.967 33.333 0.00 0.00 40.15 3.96
581 582 8.999220 TCTCTATCATGAATAAGATGATGCAC 57.001 34.615 0.00 0.00 40.15 4.57
582 583 8.813951 TCTCTATCATGAATAAGATGATGCACT 58.186 33.333 0.00 0.00 40.15 4.40
583 584 8.773404 TCTATCATGAATAAGATGATGCACTG 57.227 34.615 0.00 0.00 40.15 3.66
584 585 8.373220 TCTATCATGAATAAGATGATGCACTGT 58.627 33.333 0.00 0.00 40.15 3.55
585 586 7.818997 ATCATGAATAAGATGATGCACTGTT 57.181 32.000 0.00 0.00 38.79 3.16
586 587 8.913487 ATCATGAATAAGATGATGCACTGTTA 57.087 30.769 0.00 0.00 38.79 2.41
587 588 8.913487 TCATGAATAAGATGATGCACTGTTAT 57.087 30.769 0.00 0.00 0.00 1.89
588 589 8.780249 TCATGAATAAGATGATGCACTGTTATG 58.220 33.333 0.00 0.00 0.00 1.90
589 590 8.780249 CATGAATAAGATGATGCACTGTTATGA 58.220 33.333 0.00 0.00 0.00 2.15
590 591 8.374327 TGAATAAGATGATGCACTGTTATGAG 57.626 34.615 0.00 0.00 0.00 2.90
591 592 8.206189 TGAATAAGATGATGCACTGTTATGAGA 58.794 33.333 0.00 0.00 0.00 3.27
592 593 8.969260 AATAAGATGATGCACTGTTATGAGAA 57.031 30.769 0.00 0.00 0.00 2.87
593 594 8.969260 ATAAGATGATGCACTGTTATGAGAAA 57.031 30.769 0.00 0.00 0.00 2.52
594 595 6.922247 AGATGATGCACTGTTATGAGAAAG 57.078 37.500 0.00 0.00 0.00 2.62
595 596 5.821470 AGATGATGCACTGTTATGAGAAAGG 59.179 40.000 0.00 0.00 0.00 3.11
596 597 3.691118 TGATGCACTGTTATGAGAAAGGC 59.309 43.478 0.00 0.00 0.00 4.35
597 598 2.436417 TGCACTGTTATGAGAAAGGCC 58.564 47.619 0.00 0.00 0.00 5.19
598 599 2.040278 TGCACTGTTATGAGAAAGGCCT 59.960 45.455 0.00 0.00 0.00 5.19
599 600 3.263170 TGCACTGTTATGAGAAAGGCCTA 59.737 43.478 5.16 0.00 0.00 3.93
600 601 4.080356 TGCACTGTTATGAGAAAGGCCTAT 60.080 41.667 5.16 0.00 0.00 2.57
601 602 5.130311 TGCACTGTTATGAGAAAGGCCTATA 59.870 40.000 5.16 0.00 0.00 1.31
602 603 6.055588 GCACTGTTATGAGAAAGGCCTATAA 58.944 40.000 5.16 2.79 0.00 0.98
603 604 6.712547 GCACTGTTATGAGAAAGGCCTATAAT 59.287 38.462 5.16 0.00 0.00 1.28
604 605 7.095017 GCACTGTTATGAGAAAGGCCTATAATC 60.095 40.741 5.16 2.62 0.00 1.75
605 606 8.153550 CACTGTTATGAGAAAGGCCTATAATCT 58.846 37.037 5.16 7.93 0.00 2.40
606 607 8.718656 ACTGTTATGAGAAAGGCCTATAATCTT 58.281 33.333 5.16 0.00 0.00 2.40
607 608 8.908786 TGTTATGAGAAAGGCCTATAATCTTG 57.091 34.615 5.16 0.00 0.00 3.02
608 609 7.445402 TGTTATGAGAAAGGCCTATAATCTTGC 59.555 37.037 5.16 0.00 0.00 4.01
609 610 5.636903 TGAGAAAGGCCTATAATCTTGCT 57.363 39.130 5.16 0.00 0.00 3.91
610 611 6.747414 TGAGAAAGGCCTATAATCTTGCTA 57.253 37.500 5.16 0.00 0.00 3.49
611 612 7.321717 TGAGAAAGGCCTATAATCTTGCTAT 57.678 36.000 5.16 0.00 0.00 2.97
612 613 7.390027 TGAGAAAGGCCTATAATCTTGCTATC 58.610 38.462 5.16 0.00 0.00 2.08
613 614 6.402222 AGAAAGGCCTATAATCTTGCTATCG 58.598 40.000 5.16 0.00 0.00 2.92
614 615 6.211584 AGAAAGGCCTATAATCTTGCTATCGA 59.788 38.462 5.16 0.00 0.00 3.59
615 616 6.552445 AAGGCCTATAATCTTGCTATCGAT 57.448 37.500 5.16 2.16 0.00 3.59
616 617 6.552445 AGGCCTATAATCTTGCTATCGATT 57.448 37.500 1.29 0.00 34.49 3.34
617 618 7.661536 AGGCCTATAATCTTGCTATCGATTA 57.338 36.000 1.29 0.00 36.76 1.75
618 619 8.079211 AGGCCTATAATCTTGCTATCGATTAA 57.921 34.615 1.29 0.00 36.17 1.40
619 620 7.982354 AGGCCTATAATCTTGCTATCGATTAAC 59.018 37.037 1.29 0.00 36.17 2.01
620 621 7.043325 GGCCTATAATCTTGCTATCGATTAACG 60.043 40.741 1.71 0.00 44.09 3.18
621 622 7.515371 GCCTATAATCTTGCTATCGATTAACGC 60.515 40.741 1.71 2.46 42.26 4.84
622 623 4.992381 AATCTTGCTATCGATTAACGCC 57.008 40.909 1.71 0.00 42.26 5.68
623 624 3.446310 TCTTGCTATCGATTAACGCCA 57.554 42.857 1.71 0.00 42.26 5.69
624 625 3.120792 TCTTGCTATCGATTAACGCCAC 58.879 45.455 1.71 0.00 42.26 5.01
625 626 2.588027 TGCTATCGATTAACGCCACA 57.412 45.000 1.71 0.00 42.26 4.17
626 627 2.894902 TGCTATCGATTAACGCCACAA 58.105 42.857 1.71 0.00 42.26 3.33
627 628 2.863740 TGCTATCGATTAACGCCACAAG 59.136 45.455 1.71 0.00 42.26 3.16
628 629 2.864343 GCTATCGATTAACGCCACAAGT 59.136 45.455 1.71 0.00 42.26 3.16
629 630 3.308866 GCTATCGATTAACGCCACAAGTT 59.691 43.478 1.71 0.00 42.26 2.66
630 631 3.740044 ATCGATTAACGCCACAAGTTG 57.260 42.857 0.00 0.00 42.26 3.16
631 632 2.756829 TCGATTAACGCCACAAGTTGA 58.243 42.857 10.54 0.00 42.26 3.18
632 633 3.331150 TCGATTAACGCCACAAGTTGAT 58.669 40.909 10.54 0.00 42.26 2.57
633 634 3.124466 TCGATTAACGCCACAAGTTGATG 59.876 43.478 10.54 4.28 42.26 3.07
634 635 3.727673 CGATTAACGCCACAAGTTGATGG 60.728 47.826 10.54 13.97 39.16 3.51
635 636 1.529226 TAACGCCACAAGTTGATGGG 58.471 50.000 19.57 15.12 36.41 4.00
636 637 0.467290 AACGCCACAAGTTGATGGGT 60.467 50.000 19.57 15.61 36.41 4.51
637 638 0.467290 ACGCCACAAGTTGATGGGTT 60.467 50.000 19.57 5.53 36.41 4.11
638 639 1.202830 ACGCCACAAGTTGATGGGTTA 60.203 47.619 19.57 0.00 36.41 2.85
639 640 1.883275 CGCCACAAGTTGATGGGTTAA 59.117 47.619 19.57 0.00 36.41 2.01
640 641 2.294791 CGCCACAAGTTGATGGGTTAAA 59.705 45.455 19.57 0.00 36.41 1.52
641 642 3.649073 GCCACAAGTTGATGGGTTAAAC 58.351 45.455 19.57 4.98 36.41 2.01
642 643 3.068873 GCCACAAGTTGATGGGTTAAACA 59.931 43.478 19.57 0.00 36.41 2.83
643 644 4.795962 GCCACAAGTTGATGGGTTAAACAG 60.796 45.833 19.57 0.33 36.41 3.16
644 645 4.298332 CACAAGTTGATGGGTTAAACAGC 58.702 43.478 10.54 0.00 0.00 4.40
645 646 3.320826 ACAAGTTGATGGGTTAAACAGCC 59.679 43.478 10.54 0.00 44.31 4.85
646 647 2.525368 AGTTGATGGGTTAAACAGCCC 58.475 47.619 0.00 0.00 43.25 5.19
650 651 2.437449 GGGTTAAACAGCCCGGGT 59.563 61.111 24.63 5.98 37.02 5.28
651 652 1.228644 GGGTTAAACAGCCCGGGTT 60.229 57.895 24.63 15.04 37.02 4.11
652 653 1.246056 GGGTTAAACAGCCCGGGTTC 61.246 60.000 24.63 6.10 37.02 3.62
653 654 0.537828 GGTTAAACAGCCCGGGTTCA 60.538 55.000 24.63 0.00 0.00 3.18
654 655 1.320507 GTTAAACAGCCCGGGTTCAA 58.679 50.000 24.63 4.17 0.00 2.69
655 656 1.268625 GTTAAACAGCCCGGGTTCAAG 59.731 52.381 24.63 7.02 0.00 3.02
656 657 0.250989 TAAACAGCCCGGGTTCAAGG 60.251 55.000 24.63 6.60 0.00 3.61
660 661 3.680786 GCCCGGGTTCAAGGCAAC 61.681 66.667 24.63 0.00 46.34 4.17
703 704 3.652055 ACTCCTCCTATGCTCAACTCAT 58.348 45.455 0.00 0.00 0.00 2.90
721 722 5.888105 ACTCATTTTAAGATGATGCACTGC 58.112 37.500 8.97 0.00 35.62 4.40
737 738 3.425892 GCACTGCTCTGCATTTAAGAGTG 60.426 47.826 0.00 0.00 42.68 3.51
762 763 6.538021 GCATATCCATCAGACTATCACCAATC 59.462 42.308 0.00 0.00 0.00 2.67
775 776 1.039856 ACCAATCGCTGCACCTTTTT 58.960 45.000 0.00 0.00 0.00 1.94
780 781 2.766970 TCGCTGCACCTTTTTGTAAC 57.233 45.000 0.00 0.00 0.00 2.50
791 792 4.583073 ACCTTTTTGTAACCTAGTTGCAGG 59.417 41.667 0.00 0.46 39.08 4.85
800 801 1.610624 CCTAGTTGCAGGGAAAAGCGA 60.611 52.381 0.00 0.00 31.47 4.93
817 818 1.401539 GCGATTCAAGTTGCACTTCCC 60.402 52.381 0.00 0.00 36.03 3.97
863 864 5.402398 GTTCACACTTTGAGCAGAAAACTT 58.598 37.500 0.00 0.00 35.56 2.66
865 866 4.943705 TCACACTTTGAGCAGAAAACTTCT 59.056 37.500 0.00 0.00 41.70 2.85
880 881 3.438297 ACTTCTAATCATCACCGGTCG 57.562 47.619 2.59 0.00 0.00 4.79
937 938 0.603707 CACGCGGCATCATATTCCCT 60.604 55.000 12.47 0.00 0.00 4.20
938 939 0.973632 ACGCGGCATCATATTCCCTA 59.026 50.000 12.47 0.00 0.00 3.53
939 940 1.066858 ACGCGGCATCATATTCCCTAG 60.067 52.381 12.47 0.00 0.00 3.02
940 941 1.373570 GCGGCATCATATTCCCTAGC 58.626 55.000 0.00 0.00 0.00 3.42
952 953 2.988010 TCCCTAGCTTCGACGTACTA 57.012 50.000 0.00 0.00 0.00 1.82
984 988 2.035442 GCGGCAGAACTTGGGACTC 61.035 63.158 0.00 0.00 0.00 3.36
995 999 3.386237 GGGACTCGAGGTGCAGCT 61.386 66.667 20.31 20.31 38.05 4.24
1088 1093 7.472334 AGGTAATTGCACATCAAATTCTCTT 57.528 32.000 0.00 0.00 38.34 2.85
1089 1094 7.899973 AGGTAATTGCACATCAAATTCTCTTT 58.100 30.769 0.00 0.00 38.34 2.52
1106 1111 9.813446 AATTCTCTTTCCAAATGAAGCATTATC 57.187 29.630 0.00 0.00 32.43 1.75
1120 1125 9.956720 ATGAAGCATTATCAATTAAGCAAGTAC 57.043 29.630 0.00 0.00 0.00 2.73
1125 1139 8.332464 GCATTATCAATTAAGCAAGTACGTGTA 58.668 33.333 10.54 0.00 0.00 2.90
1155 1177 3.862267 GTCGACTCATTTCTCATCTGTGG 59.138 47.826 8.70 0.00 0.00 4.17
1157 1179 4.021104 TCGACTCATTTCTCATCTGTGGTT 60.021 41.667 0.00 0.00 0.00 3.67
1158 1180 4.092529 CGACTCATTTCTCATCTGTGGTTG 59.907 45.833 0.00 0.00 0.00 3.77
1159 1181 5.233083 ACTCATTTCTCATCTGTGGTTGA 57.767 39.130 0.00 0.00 0.00 3.18
1196 1218 2.517402 CTCCGGCGAGCCTACTCT 60.517 66.667 9.30 0.00 41.09 3.24
1486 1508 3.723348 GTGCCGGGACTTCAACGC 61.723 66.667 20.19 0.00 0.00 4.84
1748 1771 2.738321 GCCAGCCGGGTTTAATGATTTG 60.738 50.000 1.64 0.00 39.65 2.32
1760 1783 9.498307 GGGTTTAATGATTTGTACTCGTATTTG 57.502 33.333 0.00 0.00 0.00 2.32
1838 1876 6.472686 AGCTTACTAAAAGAGGACATCGAT 57.527 37.500 0.00 0.00 0.00 3.59
1889 1930 2.740452 GTAGCCTACGCCATACACTTC 58.260 52.381 0.00 0.00 34.57 3.01
1909 1950 7.179338 ACACTTCCTGTAGACAGTTTCATAGAT 59.821 37.037 8.78 0.00 42.27 1.98
2113 2154 5.636123 TCTAGGGAACAAGGCAATAAACAA 58.364 37.500 0.00 0.00 0.00 2.83
2114 2155 6.252995 TCTAGGGAACAAGGCAATAAACAAT 58.747 36.000 0.00 0.00 0.00 2.71
2115 2156 7.406916 TCTAGGGAACAAGGCAATAAACAATA 58.593 34.615 0.00 0.00 0.00 1.90
2116 2157 6.926630 AGGGAACAAGGCAATAAACAATAA 57.073 33.333 0.00 0.00 0.00 1.40
2117 2158 7.309770 AGGGAACAAGGCAATAAACAATAAA 57.690 32.000 0.00 0.00 0.00 1.40
2118 2159 7.158697 AGGGAACAAGGCAATAAACAATAAAC 58.841 34.615 0.00 0.00 0.00 2.01
2119 2160 6.931840 GGGAACAAGGCAATAAACAATAAACA 59.068 34.615 0.00 0.00 0.00 2.83
2120 2161 7.442666 GGGAACAAGGCAATAAACAATAAACAA 59.557 33.333 0.00 0.00 0.00 2.83
2127 2168 9.030452 AGGCAATAAACAATAAACAATACTCCA 57.970 29.630 0.00 0.00 0.00 3.86
2279 2320 9.836076 ATGATGCAACTAATGATATTGATTTCG 57.164 29.630 0.00 0.00 0.00 3.46
2381 2422 6.821160 CAGAATAAAAAGGAGAGAAGGGAGTC 59.179 42.308 0.00 0.00 0.00 3.36
2415 2456 7.747888 TCACTAATGTTGAATAAACCATCACG 58.252 34.615 0.00 0.00 38.06 4.35
2456 2497 3.323774 TCTAAAGAGCCCCCGAGATAA 57.676 47.619 0.00 0.00 0.00 1.75
2493 2534 6.979238 ACATTGTTAATAGAGAACTACCTCGC 59.021 38.462 0.00 0.00 38.19 5.03
2494 2535 6.519679 TTGTTAATAGAGAACTACCTCGCA 57.480 37.500 0.00 0.00 38.19 5.10
2495 2536 6.519679 TGTTAATAGAGAACTACCTCGCAA 57.480 37.500 0.00 0.00 38.19 4.85
2496 2537 7.108841 TGTTAATAGAGAACTACCTCGCAAT 57.891 36.000 0.00 0.00 38.19 3.56
2497 2538 8.229253 TGTTAATAGAGAACTACCTCGCAATA 57.771 34.615 0.00 0.00 38.19 1.90
2498 2539 8.689061 TGTTAATAGAGAACTACCTCGCAATAA 58.311 33.333 0.00 0.00 38.19 1.40
2499 2540 9.525409 GTTAATAGAGAACTACCTCGCAATAAA 57.475 33.333 0.00 0.00 38.19 1.40
2550 2591 9.383519 GTCTCAGTGGATCAATTGTCTTTAATA 57.616 33.333 5.13 0.00 0.00 0.98
2584 2625 8.485976 TTTGTGGTGCTTTTATATTTATTGGC 57.514 30.769 0.00 0.00 0.00 4.52
2591 2632 9.237846 GTGCTTTTATATTTATTGGCAGACTTC 57.762 33.333 0.00 0.00 0.00 3.01
2614 2655 8.515695 TTCTTATGTGAACCGTCTAAGATAGA 57.484 34.615 0.00 0.00 30.78 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.505293 GCTTCATCTTTGAGCTGGACTTT 59.495 43.478 0.00 0.00 32.27 2.66
1 2 3.080319 GCTTCATCTTTGAGCTGGACTT 58.920 45.455 0.00 0.00 32.27 3.01
2 3 2.039480 TGCTTCATCTTTGAGCTGGACT 59.961 45.455 0.00 0.00 32.27 3.85
3 4 2.161211 GTGCTTCATCTTTGAGCTGGAC 59.839 50.000 0.00 0.00 32.27 4.02
4 5 2.430465 GTGCTTCATCTTTGAGCTGGA 58.570 47.619 0.00 0.00 32.27 3.86
5 6 1.471684 GGTGCTTCATCTTTGAGCTGG 59.528 52.381 0.00 0.00 32.27 4.85
6 7 2.095364 GTGGTGCTTCATCTTTGAGCTG 60.095 50.000 0.00 0.00 32.27 4.24
7 8 2.157738 GTGGTGCTTCATCTTTGAGCT 58.842 47.619 0.00 0.00 32.27 4.09
8 9 2.157738 AGTGGTGCTTCATCTTTGAGC 58.842 47.619 0.00 0.00 32.27 4.26
9 10 5.293814 CAGATAGTGGTGCTTCATCTTTGAG 59.706 44.000 0.00 0.00 32.27 3.02
10 11 5.181009 CAGATAGTGGTGCTTCATCTTTGA 58.819 41.667 0.00 0.00 0.00 2.69
11 12 4.940046 ACAGATAGTGGTGCTTCATCTTTG 59.060 41.667 0.00 0.00 0.00 2.77
12 13 5.171339 ACAGATAGTGGTGCTTCATCTTT 57.829 39.130 0.00 0.00 0.00 2.52
13 14 4.383552 GGACAGATAGTGGTGCTTCATCTT 60.384 45.833 0.00 0.00 0.00 2.40
14 15 3.133721 GGACAGATAGTGGTGCTTCATCT 59.866 47.826 0.00 0.00 0.00 2.90
15 16 3.462021 GGACAGATAGTGGTGCTTCATC 58.538 50.000 0.00 0.00 0.00 2.92
16 17 2.159043 CGGACAGATAGTGGTGCTTCAT 60.159 50.000 0.00 0.00 0.00 2.57
17 18 1.204704 CGGACAGATAGTGGTGCTTCA 59.795 52.381 0.00 0.00 0.00 3.02
18 19 1.476891 TCGGACAGATAGTGGTGCTTC 59.523 52.381 0.00 0.00 0.00 3.86
19 20 1.478510 CTCGGACAGATAGTGGTGCTT 59.521 52.381 0.00 0.00 0.00 3.91
20 21 1.107114 CTCGGACAGATAGTGGTGCT 58.893 55.000 0.00 0.00 0.00 4.40
21 22 0.528684 GCTCGGACAGATAGTGGTGC 60.529 60.000 0.00 0.00 0.00 5.01
22 23 0.248661 CGCTCGGACAGATAGTGGTG 60.249 60.000 0.00 0.00 0.00 4.17
23 24 0.680280 ACGCTCGGACAGATAGTGGT 60.680 55.000 0.00 0.00 0.00 4.16
24 25 0.029567 GACGCTCGGACAGATAGTGG 59.970 60.000 0.00 0.00 0.00 4.00
25 26 0.733150 TGACGCTCGGACAGATAGTG 59.267 55.000 0.00 0.00 0.00 2.74
26 27 1.604755 GATGACGCTCGGACAGATAGT 59.395 52.381 0.00 0.00 0.00 2.12
27 28 1.068885 GGATGACGCTCGGACAGATAG 60.069 57.143 0.00 0.00 0.00 2.08
28 29 0.952280 GGATGACGCTCGGACAGATA 59.048 55.000 0.00 0.00 0.00 1.98
29 30 1.736586 GGATGACGCTCGGACAGAT 59.263 57.895 0.00 0.00 0.00 2.90
30 31 2.415608 GGGATGACGCTCGGACAGA 61.416 63.158 0.00 0.00 0.00 3.41
31 32 2.105128 GGGATGACGCTCGGACAG 59.895 66.667 0.00 0.00 0.00 3.51
32 33 3.458163 GGGGATGACGCTCGGACA 61.458 66.667 0.00 0.00 0.00 4.02
33 34 3.148279 AGGGGATGACGCTCGGAC 61.148 66.667 0.00 0.00 38.00 4.79
34 35 3.147595 CAGGGGATGACGCTCGGA 61.148 66.667 0.00 0.00 40.92 4.55
35 36 4.899239 GCAGGGGATGACGCTCGG 62.899 72.222 0.00 0.00 40.92 4.63
36 37 3.664025 TTGCAGGGGATGACGCTCG 62.664 63.158 0.00 0.00 40.92 5.03
37 38 1.817099 CTTGCAGGGGATGACGCTC 60.817 63.158 0.00 0.00 40.92 5.03
38 39 2.270205 CTTGCAGGGGATGACGCT 59.730 61.111 0.00 0.00 44.16 5.07
323 324 0.739561 CTCGGCTCCGCTAGTAGTTT 59.260 55.000 2.96 0.00 39.59 2.66
324 325 1.102222 CCTCGGCTCCGCTAGTAGTT 61.102 60.000 2.96 0.00 39.59 2.24
325 326 1.526455 CCTCGGCTCCGCTAGTAGT 60.526 63.158 2.96 0.00 39.59 2.73
326 327 2.910345 GCCTCGGCTCCGCTAGTAG 61.910 68.421 2.96 0.00 39.59 2.57
327 328 2.905880 GCCTCGGCTCCGCTAGTA 60.906 66.667 2.96 0.00 39.59 1.82
329 330 4.577246 GTGCCTCGGCTCCGCTAG 62.577 72.222 9.65 0.00 42.51 3.42
350 351 3.171388 ATGGCAGGGACGGGGATC 61.171 66.667 0.00 0.00 0.00 3.36
351 352 3.171388 GATGGCAGGGACGGGGAT 61.171 66.667 0.00 0.00 0.00 3.85
364 365 2.124983 CACTCAGGTGGCCGATGG 60.125 66.667 0.00 0.00 39.59 3.51
374 375 1.448540 CCGCTGCTTACCACTCAGG 60.449 63.158 0.00 0.00 45.67 3.86
375 376 1.448540 CCCGCTGCTTACCACTCAG 60.449 63.158 0.00 0.00 0.00 3.35
376 377 2.662596 CCCGCTGCTTACCACTCA 59.337 61.111 0.00 0.00 0.00 3.41
377 378 2.125106 CCCCGCTGCTTACCACTC 60.125 66.667 0.00 0.00 0.00 3.51
378 379 2.606519 TCCCCGCTGCTTACCACT 60.607 61.111 0.00 0.00 0.00 4.00
379 380 2.125106 CTCCCCGCTGCTTACCAC 60.125 66.667 0.00 0.00 0.00 4.16
380 381 3.399181 CCTCCCCGCTGCTTACCA 61.399 66.667 0.00 0.00 0.00 3.25
381 382 3.400054 ACCTCCCCGCTGCTTACC 61.400 66.667 0.00 0.00 0.00 2.85
382 383 2.125106 CACCTCCCCGCTGCTTAC 60.125 66.667 0.00 0.00 0.00 2.34
383 384 3.399181 CCACCTCCCCGCTGCTTA 61.399 66.667 0.00 0.00 0.00 3.09
386 387 4.554036 GATCCACCTCCCCGCTGC 62.554 72.222 0.00 0.00 0.00 5.25
387 388 3.866582 GGATCCACCTCCCCGCTG 61.867 72.222 6.95 0.00 35.41 5.18
388 389 3.721172 ATGGATCCACCTCCCCGCT 62.721 63.158 18.99 0.00 39.86 5.52
389 390 2.757124 AATGGATCCACCTCCCCGC 61.757 63.158 18.99 0.00 39.86 6.13
390 391 1.149174 CAATGGATCCACCTCCCCG 59.851 63.158 18.99 0.00 39.86 5.73
391 392 1.538666 CCAATGGATCCACCTCCCC 59.461 63.158 18.99 0.00 39.86 4.81
392 393 1.152673 GCCAATGGATCCACCTCCC 60.153 63.158 18.99 0.77 39.86 4.30
393 394 0.179006 GAGCCAATGGATCCACCTCC 60.179 60.000 18.99 6.39 39.86 4.30
394 395 0.533755 CGAGCCAATGGATCCACCTC 60.534 60.000 18.99 17.90 34.17 3.85
395 396 1.528824 CGAGCCAATGGATCCACCT 59.471 57.895 18.99 11.09 34.17 4.00
396 397 2.189499 GCGAGCCAATGGATCCACC 61.189 63.158 18.99 6.00 34.17 4.61
397 398 1.153086 AGCGAGCCAATGGATCCAC 60.153 57.895 18.99 3.96 34.17 4.02
398 399 1.153107 CAGCGAGCCAATGGATCCA 60.153 57.895 18.88 18.88 34.17 3.41
399 400 1.146930 TCAGCGAGCCAATGGATCC 59.853 57.895 12.36 4.20 34.17 3.36
400 401 1.493950 CGTCAGCGAGCCAATGGATC 61.494 60.000 7.60 7.60 41.33 3.36
401 402 1.522355 CGTCAGCGAGCCAATGGAT 60.522 57.895 2.05 0.00 41.33 3.41
402 403 2.125552 CGTCAGCGAGCCAATGGA 60.126 61.111 2.05 0.00 41.33 3.41
403 404 2.125552 TCGTCAGCGAGCCAATGG 60.126 61.111 0.00 0.00 42.81 3.16
414 415 1.078848 CCCCTCTTGGCTTCGTCAG 60.079 63.158 0.00 0.00 0.00 3.51
415 416 1.535444 TCCCCTCTTGGCTTCGTCA 60.535 57.895 0.00 0.00 0.00 4.35
416 417 1.079057 GTCCCCTCTTGGCTTCGTC 60.079 63.158 0.00 0.00 0.00 4.20
417 418 2.593956 GGTCCCCTCTTGGCTTCGT 61.594 63.158 0.00 0.00 0.00 3.85
418 419 0.976073 TAGGTCCCCTCTTGGCTTCG 60.976 60.000 0.00 0.00 34.61 3.79
419 420 0.833949 CTAGGTCCCCTCTTGGCTTC 59.166 60.000 0.00 0.00 34.61 3.86
420 421 0.621862 CCTAGGTCCCCTCTTGGCTT 60.622 60.000 0.00 0.00 34.61 4.35
421 422 1.003573 CCTAGGTCCCCTCTTGGCT 59.996 63.158 0.00 0.00 34.61 4.75
422 423 2.747443 GCCTAGGTCCCCTCTTGGC 61.747 68.421 11.31 0.00 37.42 4.52
423 424 2.435693 CGCCTAGGTCCCCTCTTGG 61.436 68.421 11.31 0.00 34.61 3.61
424 425 2.435693 CCGCCTAGGTCCCCTCTTG 61.436 68.421 11.31 0.00 34.61 3.02
425 426 2.041819 CCGCCTAGGTCCCCTCTT 60.042 66.667 11.31 0.00 34.61 2.85
426 427 4.862823 GCCGCCTAGGTCCCCTCT 62.863 72.222 11.31 0.00 43.70 3.69
430 431 4.162690 CTGTGCCGCCTAGGTCCC 62.163 72.222 11.31 0.00 43.70 4.46
431 432 3.372554 GACTGTGCCGCCTAGGTCC 62.373 68.421 11.31 0.00 43.70 4.46
432 433 2.184579 GACTGTGCCGCCTAGGTC 59.815 66.667 11.31 1.66 43.70 3.85
433 434 2.603473 TGACTGTGCCGCCTAGGT 60.603 61.111 11.31 0.00 43.70 3.08
434 435 2.125512 GTGACTGTGCCGCCTAGG 60.126 66.667 3.67 3.67 44.97 3.02
435 436 1.086067 CATGTGACTGTGCCGCCTAG 61.086 60.000 0.00 0.00 0.00 3.02
436 437 1.079197 CATGTGACTGTGCCGCCTA 60.079 57.895 0.00 0.00 0.00 3.93
437 438 2.359107 CATGTGACTGTGCCGCCT 60.359 61.111 0.00 0.00 0.00 5.52
438 439 2.669569 ACATGTGACTGTGCCGCC 60.670 61.111 0.00 0.00 0.00 6.13
439 440 2.557805 CACATGTGACTGTGCCGC 59.442 61.111 21.64 0.00 40.03 6.53
440 441 2.327343 CCCACATGTGACTGTGCCG 61.327 63.158 27.46 7.42 44.16 5.69
441 442 0.537143 TTCCCACATGTGACTGTGCC 60.537 55.000 27.46 0.00 44.16 5.01
442 443 1.267806 CTTTCCCACATGTGACTGTGC 59.732 52.381 27.46 0.00 44.16 4.57
443 444 2.810274 CTCTTTCCCACATGTGACTGTG 59.190 50.000 27.46 13.41 44.92 3.66
444 445 2.439507 ACTCTTTCCCACATGTGACTGT 59.560 45.455 27.46 11.95 0.00 3.55
445 446 3.070018 GACTCTTTCCCACATGTGACTG 58.930 50.000 27.46 14.53 0.00 3.51
446 447 2.289072 CGACTCTTTCCCACATGTGACT 60.289 50.000 27.46 0.00 0.00 3.41
447 448 2.069273 CGACTCTTTCCCACATGTGAC 58.931 52.381 27.46 5.83 0.00 3.67
448 449 1.608025 GCGACTCTTTCCCACATGTGA 60.608 52.381 27.46 5.15 0.00 3.58
449 450 0.798776 GCGACTCTTTCCCACATGTG 59.201 55.000 19.31 19.31 0.00 3.21
450 451 0.670546 CGCGACTCTTTCCCACATGT 60.671 55.000 0.00 0.00 0.00 3.21
451 452 0.670546 ACGCGACTCTTTCCCACATG 60.671 55.000 15.93 0.00 0.00 3.21
452 453 0.389948 GACGCGACTCTTTCCCACAT 60.390 55.000 15.93 0.00 0.00 3.21
453 454 1.006571 GACGCGACTCTTTCCCACA 60.007 57.895 15.93 0.00 0.00 4.17
454 455 0.733223 GAGACGCGACTCTTTCCCAC 60.733 60.000 27.29 2.85 34.47 4.61
455 456 1.176619 TGAGACGCGACTCTTTCCCA 61.177 55.000 32.16 14.30 37.73 4.37
456 457 0.733223 GTGAGACGCGACTCTTTCCC 60.733 60.000 32.16 15.32 37.73 3.97
457 458 1.066114 CGTGAGACGCGACTCTTTCC 61.066 60.000 32.16 18.97 39.94 3.13
458 459 0.110328 TCGTGAGACGCGACTCTTTC 60.110 55.000 32.16 22.29 41.48 2.62
459 460 0.309922 TTCGTGAGACGCGACTCTTT 59.690 50.000 32.16 3.95 45.96 2.52
460 461 0.110147 CTTCGTGAGACGCGACTCTT 60.110 55.000 32.16 2.66 45.96 2.85
461 462 1.229315 ACTTCGTGAGACGCGACTCT 61.229 55.000 32.16 18.42 45.96 3.24
462 463 0.385723 AACTTCGTGAGACGCGACTC 60.386 55.000 27.72 27.72 45.96 3.36
463 464 0.030369 AAACTTCGTGAGACGCGACT 59.970 50.000 15.93 13.61 45.96 4.18
464 465 0.430110 GAAACTTCGTGAGACGCGAC 59.570 55.000 15.93 6.86 45.96 5.19
465 466 0.662374 GGAAACTTCGTGAGACGCGA 60.662 55.000 15.93 3.35 44.64 5.87
466 467 1.615107 GGGAAACTTCGTGAGACGCG 61.615 60.000 3.53 3.53 42.21 6.01
467 468 0.319641 AGGGAAACTTCGTGAGACGC 60.320 55.000 0.00 0.00 42.21 5.19
468 469 2.150397 AAGGGAAACTTCGTGAGACG 57.850 50.000 0.00 0.00 44.19 4.18
469 470 2.031944 GCAAAGGGAAACTTCGTGAGAC 60.032 50.000 0.00 0.00 41.84 3.36
470 471 2.218603 GCAAAGGGAAACTTCGTGAGA 58.781 47.619 0.00 0.00 38.85 3.27
471 472 1.946768 TGCAAAGGGAAACTTCGTGAG 59.053 47.619 0.00 0.00 38.85 3.51
472 473 2.045561 TGCAAAGGGAAACTTCGTGA 57.954 45.000 0.00 0.00 38.85 4.35
473 474 2.351738 GGATGCAAAGGGAAACTTCGTG 60.352 50.000 0.00 0.00 38.85 4.35
474 475 1.886542 GGATGCAAAGGGAAACTTCGT 59.113 47.619 0.00 0.00 38.85 3.85
475 476 2.162681 AGGATGCAAAGGGAAACTTCG 58.837 47.619 0.00 0.00 38.85 3.79
476 477 3.829026 AGAAGGATGCAAAGGGAAACTTC 59.171 43.478 0.00 0.00 38.85 3.01
477 478 3.829026 GAGAAGGATGCAAAGGGAAACTT 59.171 43.478 0.00 0.00 42.52 2.66
478 479 3.425659 GAGAAGGATGCAAAGGGAAACT 58.574 45.455 0.00 0.00 0.00 2.66
479 480 2.162408 CGAGAAGGATGCAAAGGGAAAC 59.838 50.000 0.00 0.00 0.00 2.78
480 481 2.436417 CGAGAAGGATGCAAAGGGAAA 58.564 47.619 0.00 0.00 0.00 3.13
481 482 1.340017 CCGAGAAGGATGCAAAGGGAA 60.340 52.381 0.00 0.00 45.00 3.97
482 483 0.253044 CCGAGAAGGATGCAAAGGGA 59.747 55.000 0.00 0.00 45.00 4.20
483 484 1.379642 GCCGAGAAGGATGCAAAGGG 61.380 60.000 0.00 0.00 45.00 3.95
484 485 1.379642 GGCCGAGAAGGATGCAAAGG 61.380 60.000 0.00 0.00 45.00 3.11
485 486 0.393537 AGGCCGAGAAGGATGCAAAG 60.394 55.000 0.00 0.00 45.00 2.77
486 487 0.392998 GAGGCCGAGAAGGATGCAAA 60.393 55.000 0.00 0.00 45.00 3.68
487 488 1.221840 GAGGCCGAGAAGGATGCAA 59.778 57.895 0.00 0.00 45.00 4.08
488 489 1.989508 TGAGGCCGAGAAGGATGCA 60.990 57.895 0.00 0.00 45.00 3.96
489 490 1.522580 GTGAGGCCGAGAAGGATGC 60.523 63.158 0.00 0.00 45.00 3.91
490 491 0.467384 ATGTGAGGCCGAGAAGGATG 59.533 55.000 0.00 0.00 45.00 3.51
491 492 1.134280 CAATGTGAGGCCGAGAAGGAT 60.134 52.381 0.00 0.00 45.00 3.24
492 493 0.250234 CAATGTGAGGCCGAGAAGGA 59.750 55.000 0.00 0.00 45.00 3.36
493 494 1.372087 GCAATGTGAGGCCGAGAAGG 61.372 60.000 0.00 0.00 44.97 3.46
494 495 0.674581 TGCAATGTGAGGCCGAGAAG 60.675 55.000 0.00 0.00 0.00 2.85
495 496 0.035152 ATGCAATGTGAGGCCGAGAA 60.035 50.000 0.00 0.00 0.00 2.87
496 497 0.745486 CATGCAATGTGAGGCCGAGA 60.745 55.000 0.00 0.00 40.20 4.04
497 498 1.721664 CCATGCAATGTGAGGCCGAG 61.722 60.000 0.00 0.00 44.81 4.63
498 499 1.750018 CCATGCAATGTGAGGCCGA 60.750 57.895 0.00 0.00 44.81 5.54
499 500 1.314534 TTCCATGCAATGTGAGGCCG 61.315 55.000 0.00 0.00 44.81 6.13
500 501 0.174162 GTTCCATGCAATGTGAGGCC 59.826 55.000 0.00 0.00 44.81 5.19
501 502 0.174162 GGTTCCATGCAATGTGAGGC 59.826 55.000 0.00 0.00 44.81 4.70
502 503 0.819582 GGGTTCCATGCAATGTGAGG 59.180 55.000 0.00 0.00 44.81 3.86
503 504 1.843368 AGGGTTCCATGCAATGTGAG 58.157 50.000 0.00 0.00 44.81 3.51
504 505 1.894466 CAAGGGTTCCATGCAATGTGA 59.106 47.619 0.00 0.00 44.81 3.58
505 506 1.066716 CCAAGGGTTCCATGCAATGTG 60.067 52.381 0.00 0.00 44.81 3.21
506 507 1.269012 CCAAGGGTTCCATGCAATGT 58.731 50.000 0.00 0.00 44.81 2.71
507 508 1.269012 ACCAAGGGTTCCATGCAATG 58.731 50.000 0.00 0.00 36.88 2.82
508 509 2.225242 TGTACCAAGGGTTCCATGCAAT 60.225 45.455 0.00 0.00 37.09 3.56
509 510 1.145945 TGTACCAAGGGTTCCATGCAA 59.854 47.619 0.00 0.00 37.09 4.08
510 511 0.774276 TGTACCAAGGGTTCCATGCA 59.226 50.000 0.00 0.00 37.09 3.96
511 512 1.750778 CATGTACCAAGGGTTCCATGC 59.249 52.381 12.04 0.00 37.18 4.06
512 513 3.364460 TCATGTACCAAGGGTTCCATG 57.636 47.619 15.85 15.85 41.23 3.66
513 514 4.017591 TGAATCATGTACCAAGGGTTCCAT 60.018 41.667 0.00 0.00 37.09 3.41
514 515 3.332187 TGAATCATGTACCAAGGGTTCCA 59.668 43.478 0.00 0.00 37.09 3.53
515 516 3.694566 GTGAATCATGTACCAAGGGTTCC 59.305 47.826 0.00 0.00 37.09 3.62
516 517 4.331968 TGTGAATCATGTACCAAGGGTTC 58.668 43.478 0.00 0.00 37.09 3.62
517 518 4.202567 ACTGTGAATCATGTACCAAGGGTT 60.203 41.667 0.00 0.00 37.09 4.11
518 519 3.330701 ACTGTGAATCATGTACCAAGGGT 59.669 43.478 0.00 0.00 40.16 4.34
519 520 3.955471 ACTGTGAATCATGTACCAAGGG 58.045 45.455 0.00 0.00 0.00 3.95
520 521 5.390885 CGAAACTGTGAATCATGTACCAAGG 60.391 44.000 0.00 0.00 0.00 3.61
521 522 5.621422 CGAAACTGTGAATCATGTACCAAG 58.379 41.667 0.00 0.00 0.00 3.61
522 523 4.083537 GCGAAACTGTGAATCATGTACCAA 60.084 41.667 0.00 0.00 0.00 3.67
523 524 3.435327 GCGAAACTGTGAATCATGTACCA 59.565 43.478 0.00 0.00 0.00 3.25
524 525 3.483574 CGCGAAACTGTGAATCATGTACC 60.484 47.826 0.00 0.00 0.00 3.34
525 526 3.659735 CGCGAAACTGTGAATCATGTAC 58.340 45.455 0.00 0.00 0.00 2.90
526 527 2.093625 GCGCGAAACTGTGAATCATGTA 59.906 45.455 12.10 0.00 0.00 2.29
527 528 1.135972 GCGCGAAACTGTGAATCATGT 60.136 47.619 12.10 0.00 0.00 3.21
528 529 1.527696 GCGCGAAACTGTGAATCATG 58.472 50.000 12.10 0.00 0.00 3.07
529 530 0.447801 GGCGCGAAACTGTGAATCAT 59.552 50.000 12.10 0.00 0.00 2.45
530 531 0.882484 TGGCGCGAAACTGTGAATCA 60.882 50.000 12.10 0.00 0.00 2.57
531 532 0.447801 ATGGCGCGAAACTGTGAATC 59.552 50.000 12.10 0.00 0.00 2.52
532 533 1.732941 TATGGCGCGAAACTGTGAAT 58.267 45.000 12.10 0.00 0.00 2.57
533 534 1.195900 GTTATGGCGCGAAACTGTGAA 59.804 47.619 12.10 0.00 0.00 3.18
534 535 0.793861 GTTATGGCGCGAAACTGTGA 59.206 50.000 12.10 0.00 0.00 3.58
535 536 0.796312 AGTTATGGCGCGAAACTGTG 59.204 50.000 12.10 0.00 32.38 3.66
536 537 1.076332 GAGTTATGGCGCGAAACTGT 58.924 50.000 20.80 3.26 33.72 3.55
537 538 1.324736 GAGAGTTATGGCGCGAAACTG 59.675 52.381 20.80 0.00 33.72 3.16
538 539 1.204941 AGAGAGTTATGGCGCGAAACT 59.795 47.619 12.10 17.25 36.20 2.66
539 540 1.588861 GAGAGAGTTATGGCGCGAAAC 59.411 52.381 12.10 8.16 0.00 2.78
540 541 1.476891 AGAGAGAGTTATGGCGCGAAA 59.523 47.619 12.10 0.00 0.00 3.46
541 542 1.103803 AGAGAGAGTTATGGCGCGAA 58.896 50.000 12.10 0.00 0.00 4.70
542 543 1.963172 TAGAGAGAGTTATGGCGCGA 58.037 50.000 12.10 0.00 0.00 5.87
543 544 2.226674 TGATAGAGAGAGTTATGGCGCG 59.773 50.000 0.00 0.00 0.00 6.86
544 545 3.924918 TGATAGAGAGAGTTATGGCGC 57.075 47.619 0.00 0.00 0.00 6.53
545 546 5.635417 TCATGATAGAGAGAGTTATGGCG 57.365 43.478 0.00 0.00 0.00 5.69
546 547 9.585099 CTTATTCATGATAGAGAGAGTTATGGC 57.415 37.037 0.00 0.00 0.00 4.40
553 554 9.524106 GCATCATCTTATTCATGATAGAGAGAG 57.476 37.037 0.00 0.00 38.67 3.20
554 555 9.032624 TGCATCATCTTATTCATGATAGAGAGA 57.967 33.333 0.00 3.85 38.67 3.10
555 556 9.089601 GTGCATCATCTTATTCATGATAGAGAG 57.910 37.037 0.00 0.00 38.67 3.20
556 557 8.813951 AGTGCATCATCTTATTCATGATAGAGA 58.186 33.333 0.00 0.44 38.67 3.10
557 558 8.874816 CAGTGCATCATCTTATTCATGATAGAG 58.125 37.037 0.00 0.00 38.67 2.43
558 559 8.373220 ACAGTGCATCATCTTATTCATGATAGA 58.627 33.333 0.00 0.54 38.67 1.98
559 560 8.549338 ACAGTGCATCATCTTATTCATGATAG 57.451 34.615 0.00 0.00 38.67 2.08
560 561 8.913487 AACAGTGCATCATCTTATTCATGATA 57.087 30.769 0.00 0.00 38.67 2.15
561 562 7.818997 AACAGTGCATCATCTTATTCATGAT 57.181 32.000 0.00 0.00 40.92 2.45
562 563 8.780249 CATAACAGTGCATCATCTTATTCATGA 58.220 33.333 0.00 0.00 34.74 3.07
563 564 8.780249 TCATAACAGTGCATCATCTTATTCATG 58.220 33.333 0.00 0.00 0.00 3.07
564 565 8.913487 TCATAACAGTGCATCATCTTATTCAT 57.087 30.769 0.00 0.00 0.00 2.57
565 566 8.206189 TCTCATAACAGTGCATCATCTTATTCA 58.794 33.333 0.00 0.00 0.00 2.57
566 567 8.599055 TCTCATAACAGTGCATCATCTTATTC 57.401 34.615 0.00 0.00 0.00 1.75
567 568 8.969260 TTCTCATAACAGTGCATCATCTTATT 57.031 30.769 0.00 0.00 0.00 1.40
568 569 8.969260 TTTCTCATAACAGTGCATCATCTTAT 57.031 30.769 0.00 0.00 0.00 1.73
569 570 7.496920 CCTTTCTCATAACAGTGCATCATCTTA 59.503 37.037 0.00 0.00 0.00 2.10
570 571 6.318144 CCTTTCTCATAACAGTGCATCATCTT 59.682 38.462 0.00 0.00 0.00 2.40
571 572 5.821470 CCTTTCTCATAACAGTGCATCATCT 59.179 40.000 0.00 0.00 0.00 2.90
572 573 5.505324 GCCTTTCTCATAACAGTGCATCATC 60.505 44.000 0.00 0.00 0.00 2.92
573 574 4.337555 GCCTTTCTCATAACAGTGCATCAT 59.662 41.667 0.00 0.00 0.00 2.45
574 575 3.691118 GCCTTTCTCATAACAGTGCATCA 59.309 43.478 0.00 0.00 0.00 3.07
575 576 3.065925 GGCCTTTCTCATAACAGTGCATC 59.934 47.826 0.00 0.00 0.00 3.91
576 577 3.019564 GGCCTTTCTCATAACAGTGCAT 58.980 45.455 0.00 0.00 0.00 3.96
577 578 2.040278 AGGCCTTTCTCATAACAGTGCA 59.960 45.455 0.00 0.00 0.00 4.57
578 579 2.716217 AGGCCTTTCTCATAACAGTGC 58.284 47.619 0.00 0.00 0.00 4.40
579 580 8.153550 AGATTATAGGCCTTTCTCATAACAGTG 58.846 37.037 12.58 0.00 0.00 3.66
580 581 8.268878 AGATTATAGGCCTTTCTCATAACAGT 57.731 34.615 12.58 0.00 0.00 3.55
581 582 8.997323 CAAGATTATAGGCCTTTCTCATAACAG 58.003 37.037 12.58 0.00 0.00 3.16
582 583 7.445402 GCAAGATTATAGGCCTTTCTCATAACA 59.555 37.037 12.58 0.00 0.00 2.41
583 584 7.663493 AGCAAGATTATAGGCCTTTCTCATAAC 59.337 37.037 12.58 3.94 0.00 1.89
584 585 7.749666 AGCAAGATTATAGGCCTTTCTCATAA 58.250 34.615 12.58 9.17 0.00 1.90
585 586 7.321717 AGCAAGATTATAGGCCTTTCTCATA 57.678 36.000 12.58 0.00 0.00 2.15
586 587 6.198237 AGCAAGATTATAGGCCTTTCTCAT 57.802 37.500 12.58 0.00 0.00 2.90
587 588 5.636903 AGCAAGATTATAGGCCTTTCTCA 57.363 39.130 12.58 0.00 0.00 3.27
588 589 6.533367 CGATAGCAAGATTATAGGCCTTTCTC 59.467 42.308 12.58 3.95 0.00 2.87
589 590 6.211584 TCGATAGCAAGATTATAGGCCTTTCT 59.788 38.462 12.58 5.95 0.00 2.52
590 591 6.398918 TCGATAGCAAGATTATAGGCCTTTC 58.601 40.000 12.58 3.34 0.00 2.62
591 592 6.360370 TCGATAGCAAGATTATAGGCCTTT 57.640 37.500 12.58 5.50 0.00 3.11
592 593 6.552445 ATCGATAGCAAGATTATAGGCCTT 57.448 37.500 12.58 0.81 0.00 4.35
593 594 6.552445 AATCGATAGCAAGATTATAGGCCT 57.448 37.500 11.78 11.78 35.54 5.19
594 595 7.043325 CGTTAATCGATAGCAAGATTATAGGCC 60.043 40.741 0.00 0.00 42.86 5.19
595 596 7.515371 GCGTTAATCGATAGCAAGATTATAGGC 60.515 40.741 0.00 4.89 42.86 3.93
596 597 7.043325 GGCGTTAATCGATAGCAAGATTATAGG 60.043 40.741 0.00 0.17 42.86 2.57
597 598 7.488150 TGGCGTTAATCGATAGCAAGATTATAG 59.512 37.037 0.00 0.00 42.86 1.31
598 599 7.274904 GTGGCGTTAATCGATAGCAAGATTATA 59.725 37.037 0.00 0.00 42.86 0.98
599 600 6.090898 GTGGCGTTAATCGATAGCAAGATTAT 59.909 38.462 0.00 0.00 42.86 1.28
600 601 5.404366 GTGGCGTTAATCGATAGCAAGATTA 59.596 40.000 0.00 0.00 42.86 1.75
601 602 4.211374 GTGGCGTTAATCGATAGCAAGATT 59.789 41.667 0.00 0.00 42.86 2.40
602 603 3.741344 GTGGCGTTAATCGATAGCAAGAT 59.259 43.478 0.00 0.00 42.86 2.40
603 604 3.120792 GTGGCGTTAATCGATAGCAAGA 58.879 45.455 0.00 0.00 42.86 3.02
604 605 2.863740 TGTGGCGTTAATCGATAGCAAG 59.136 45.455 0.00 0.00 42.86 4.01
605 606 2.894902 TGTGGCGTTAATCGATAGCAA 58.105 42.857 0.00 0.00 42.86 3.91
606 607 2.588027 TGTGGCGTTAATCGATAGCA 57.412 45.000 0.00 0.00 42.86 3.49
607 608 2.864343 ACTTGTGGCGTTAATCGATAGC 59.136 45.455 0.00 2.35 42.86 2.97
608 609 4.565166 TCAACTTGTGGCGTTAATCGATAG 59.435 41.667 0.00 0.00 42.86 2.08
609 610 4.496360 TCAACTTGTGGCGTTAATCGATA 58.504 39.130 0.00 0.00 42.86 2.92
610 611 3.331150 TCAACTTGTGGCGTTAATCGAT 58.669 40.909 0.00 0.00 42.86 3.59
611 612 2.756829 TCAACTTGTGGCGTTAATCGA 58.243 42.857 0.00 0.00 42.86 3.59
612 613 3.416277 CATCAACTTGTGGCGTTAATCG 58.584 45.455 0.00 0.00 43.12 3.34
613 614 3.427503 CCCATCAACTTGTGGCGTTAATC 60.428 47.826 5.36 0.00 34.08 1.75
614 615 2.491693 CCCATCAACTTGTGGCGTTAAT 59.508 45.455 5.36 0.00 34.08 1.40
615 616 1.883275 CCCATCAACTTGTGGCGTTAA 59.117 47.619 5.36 0.00 34.08 2.01
616 617 1.202830 ACCCATCAACTTGTGGCGTTA 60.203 47.619 5.36 0.00 34.08 3.18
617 618 0.467290 ACCCATCAACTTGTGGCGTT 60.467 50.000 5.36 0.00 34.08 4.84
618 619 0.467290 AACCCATCAACTTGTGGCGT 60.467 50.000 5.36 3.49 34.08 5.68
619 620 1.529226 TAACCCATCAACTTGTGGCG 58.471 50.000 5.36 0.00 34.08 5.69
620 621 3.068873 TGTTTAACCCATCAACTTGTGGC 59.931 43.478 0.00 0.00 34.08 5.01
621 622 4.795962 GCTGTTTAACCCATCAACTTGTGG 60.796 45.833 0.00 4.31 35.22 4.17
622 623 4.298332 GCTGTTTAACCCATCAACTTGTG 58.702 43.478 0.00 0.00 0.00 3.33
623 624 3.320826 GGCTGTTTAACCCATCAACTTGT 59.679 43.478 0.00 0.00 0.00 3.16
624 625 3.306019 GGGCTGTTTAACCCATCAACTTG 60.306 47.826 0.00 0.00 46.22 3.16
625 626 2.897326 GGGCTGTTTAACCCATCAACTT 59.103 45.455 0.00 0.00 46.22 2.66
626 627 2.525368 GGGCTGTTTAACCCATCAACT 58.475 47.619 0.00 0.00 46.22 3.16
633 634 1.228644 AACCCGGGCTGTTTAACCC 60.229 57.895 24.08 0.00 43.25 4.11
634 635 0.537828 TGAACCCGGGCTGTTTAACC 60.538 55.000 24.08 0.00 0.00 2.85
635 636 1.268625 CTTGAACCCGGGCTGTTTAAC 59.731 52.381 24.08 3.62 0.00 2.01
636 637 1.611519 CTTGAACCCGGGCTGTTTAA 58.388 50.000 24.08 9.93 0.00 1.52
637 638 0.250989 CCTTGAACCCGGGCTGTTTA 60.251 55.000 24.08 0.53 0.00 2.01
638 639 1.530655 CCTTGAACCCGGGCTGTTT 60.531 57.895 24.08 7.20 0.00 2.83
639 640 2.115266 CCTTGAACCCGGGCTGTT 59.885 61.111 24.08 7.67 0.00 3.16
640 641 4.660938 GCCTTGAACCCGGGCTGT 62.661 66.667 24.08 5.87 42.31 4.40
641 642 4.659172 TGCCTTGAACCCGGGCTG 62.659 66.667 24.08 6.08 45.45 4.85
642 643 3.897122 TTGCCTTGAACCCGGGCT 61.897 61.111 24.08 8.98 45.45 5.19
643 644 2.757980 TAGTTGCCTTGAACCCGGGC 62.758 60.000 24.08 5.60 45.45 6.13
644 645 0.958876 GTAGTTGCCTTGAACCCGGG 60.959 60.000 22.25 22.25 0.00 5.73
645 646 0.958876 GGTAGTTGCCTTGAACCCGG 60.959 60.000 0.00 0.00 0.00 5.73
646 647 0.036306 AGGTAGTTGCCTTGAACCCG 59.964 55.000 0.00 0.00 34.71 5.28
647 648 3.646736 ATAGGTAGTTGCCTTGAACCC 57.353 47.619 0.00 0.00 39.94 4.11
648 649 7.457024 TTTAAATAGGTAGTTGCCTTGAACC 57.543 36.000 0.00 0.00 39.94 3.62
649 650 9.353999 CAATTTAAATAGGTAGTTGCCTTGAAC 57.646 33.333 0.01 0.00 39.94 3.18
650 651 9.303116 TCAATTTAAATAGGTAGTTGCCTTGAA 57.697 29.630 0.01 0.00 39.94 2.69
651 652 8.871629 TCAATTTAAATAGGTAGTTGCCTTGA 57.128 30.769 0.01 0.00 39.94 3.02
672 673 8.441311 TGAGCATAGGAGGAGTTATATTCAAT 57.559 34.615 0.00 0.00 0.00 2.57
678 679 6.373759 TGAGTTGAGCATAGGAGGAGTTATA 58.626 40.000 0.00 0.00 0.00 0.98
682 683 3.107402 TGAGTTGAGCATAGGAGGAGT 57.893 47.619 0.00 0.00 0.00 3.85
693 694 6.471519 GTGCATCATCTTAAAATGAGTTGAGC 59.528 38.462 0.00 0.00 38.96 4.26
703 704 4.142534 GCAGAGCAGTGCATCATCTTAAAA 60.143 41.667 19.20 0.00 43.41 1.52
737 738 5.411831 TGGTGATAGTCTGATGGATATGC 57.588 43.478 0.00 0.00 0.00 3.14
762 763 1.336755 AGGTTACAAAAAGGTGCAGCG 59.663 47.619 10.78 0.00 0.00 5.18
775 776 4.394729 CTTTTCCCTGCAACTAGGTTACA 58.605 43.478 0.00 0.00 36.02 2.41
780 781 0.804989 CGCTTTTCCCTGCAACTAGG 59.195 55.000 0.00 0.00 37.59 3.02
791 792 2.726241 GTGCAACTTGAATCGCTTTTCC 59.274 45.455 0.00 0.00 0.00 3.13
863 864 1.337071 GAGCGACCGGTGATGATTAGA 59.663 52.381 14.63 0.00 0.00 2.10
865 866 1.337071 GAGAGCGACCGGTGATGATTA 59.663 52.381 14.63 0.00 0.00 1.75
880 881 8.380679 CCTATTTATAGGCGGATCGAGAGAGC 62.381 50.000 2.96 0.00 43.12 4.09
937 938 9.438291 GTAATGTAATTTAGTACGTCGAAGCTA 57.562 33.333 0.00 0.00 37.87 3.32
938 939 7.164826 CGTAATGTAATTTAGTACGTCGAAGCT 59.835 37.037 0.00 0.00 37.87 3.74
939 940 7.164171 TCGTAATGTAATTTAGTACGTCGAAGC 59.836 37.037 16.47 0.00 41.27 3.86
940 941 8.533737 TCGTAATGTAATTTAGTACGTCGAAG 57.466 34.615 16.47 0.00 41.27 3.79
952 953 3.527533 TCTGCCGCTCGTAATGTAATTT 58.472 40.909 0.00 0.00 37.87 1.82
995 999 1.107945 TTGGATAGTCGCCATGTCGA 58.892 50.000 0.00 0.00 34.90 4.20
1088 1093 9.316730 GCTTAATTGATAATGCTTCATTTGGAA 57.683 29.630 0.00 0.00 35.54 3.53
1089 1094 8.476447 TGCTTAATTGATAATGCTTCATTTGGA 58.524 29.630 0.00 0.00 35.54 3.53
1117 1122 6.881017 TGAGTCGACATACATATACACGTAC 58.119 40.000 19.50 0.00 0.00 3.67
1120 1125 7.803659 AGAAATGAGTCGACATACATATACACG 59.196 37.037 19.50 0.00 0.00 4.49
1125 1139 8.801299 AGATGAGAAATGAGTCGACATACATAT 58.199 33.333 19.50 9.60 0.00 1.78
1128 1142 6.127619 ACAGATGAGAAATGAGTCGACATACA 60.128 38.462 19.50 14.65 0.00 2.29
1155 1177 3.055530 TCTTGCTCCTCCTTCTGATCAAC 60.056 47.826 0.00 0.00 0.00 3.18
1157 1179 2.825223 TCTTGCTCCTCCTTCTGATCA 58.175 47.619 0.00 0.00 0.00 2.92
1158 1180 3.197549 AGTTCTTGCTCCTCCTTCTGATC 59.802 47.826 0.00 0.00 0.00 2.92
1159 1181 3.180507 AGTTCTTGCTCCTCCTTCTGAT 58.819 45.455 0.00 0.00 0.00 2.90
1196 1218 0.527113 CCATGTTGCTCGCCATTTCA 59.473 50.000 0.00 0.00 0.00 2.69
1486 1508 3.691342 TCGGGTTCAGCCTCGTGG 61.691 66.667 0.00 0.00 37.43 4.94
1538 1560 3.843240 CGGTCGAAGCTCTTGCGC 61.843 66.667 0.00 0.00 45.42 6.09
1688 1710 2.818132 CCTCATCGGGACTGCTCC 59.182 66.667 0.00 0.00 35.50 4.70
1782 1806 5.127194 ACTCGACACTCCTGCTATTTATGAA 59.873 40.000 0.00 0.00 0.00 2.57
1783 1807 4.645136 ACTCGACACTCCTGCTATTTATGA 59.355 41.667 0.00 0.00 0.00 2.15
1784 1808 4.938080 ACTCGACACTCCTGCTATTTATG 58.062 43.478 0.00 0.00 0.00 1.90
1785 1809 6.321690 ACTTACTCGACACTCCTGCTATTTAT 59.678 38.462 0.00 0.00 0.00 1.40
1788 1812 4.017808 ACTTACTCGACACTCCTGCTATT 58.982 43.478 0.00 0.00 0.00 1.73
1789 1813 3.622630 ACTTACTCGACACTCCTGCTAT 58.377 45.455 0.00 0.00 0.00 2.97
1827 1865 8.948145 ACATAGTACTACATAATCGATGTCCTC 58.052 37.037 4.31 0.00 46.33 3.71
1855 1896 1.202417 AGGCTACGTTCACATCGATGG 60.202 52.381 28.09 17.13 0.00 3.51
1909 1950 8.522003 ACACAATATGTTTGTATGCATGAAAGA 58.478 29.630 10.16 7.34 38.98 2.52
2030 2071 7.692908 AACAAATAATTTCACGACCAAGTTG 57.307 32.000 0.00 0.00 0.00 3.16
2113 2154 6.831664 AGGACCAGATGGAGTATTGTTTAT 57.168 37.500 5.72 0.00 38.94 1.40
2114 2155 6.636454 AAGGACCAGATGGAGTATTGTTTA 57.364 37.500 5.72 0.00 38.94 2.01
2115 2156 5.520748 AAGGACCAGATGGAGTATTGTTT 57.479 39.130 5.72 0.00 38.94 2.83
2116 2157 5.520748 AAAGGACCAGATGGAGTATTGTT 57.479 39.130 5.72 0.00 38.94 2.83
2117 2158 5.520748 AAAAGGACCAGATGGAGTATTGT 57.479 39.130 5.72 0.00 38.94 2.71
2118 2159 7.112779 AGTAAAAAGGACCAGATGGAGTATTG 58.887 38.462 5.72 0.00 38.94 1.90
2119 2160 7.272144 AGTAAAAAGGACCAGATGGAGTATT 57.728 36.000 5.72 0.00 38.94 1.89
2120 2161 6.126739 GGAGTAAAAAGGACCAGATGGAGTAT 60.127 42.308 5.72 0.00 38.94 2.12
2127 2168 2.304761 TGCGGAGTAAAAAGGACCAGAT 59.695 45.455 0.00 0.00 0.00 2.90
2130 2171 2.871096 ATGCGGAGTAAAAAGGACCA 57.129 45.000 0.00 0.00 0.00 4.02
2357 2398 6.733334 AGACTCCCTTCTCTCCTTTTTATTCT 59.267 38.462 0.00 0.00 0.00 2.40
2415 2456 4.275936 AGAAGCACCAAAGATGTGTTGTAC 59.724 41.667 0.00 0.00 36.11 2.90
2469 2510 6.978659 TGCGAGGTAGTTCTCTATTAACAATG 59.021 38.462 0.00 0.00 0.00 2.82
2500 2541 6.326323 ACCCATTTGTGTGGTTCTCTATTTTT 59.674 34.615 0.00 0.00 37.57 1.94
2501 2542 5.838521 ACCCATTTGTGTGGTTCTCTATTTT 59.161 36.000 0.00 0.00 37.57 1.82
2502 2543 5.393866 ACCCATTTGTGTGGTTCTCTATTT 58.606 37.500 0.00 0.00 37.57 1.40
2503 2544 4.998051 ACCCATTTGTGTGGTTCTCTATT 58.002 39.130 0.00 0.00 37.57 1.73
2504 2545 4.289672 AGACCCATTTGTGTGGTTCTCTAT 59.710 41.667 0.00 0.00 36.39 1.98
2505 2546 3.650942 AGACCCATTTGTGTGGTTCTCTA 59.349 43.478 0.00 0.00 36.39 2.43
2506 2547 2.443255 AGACCCATTTGTGTGGTTCTCT 59.557 45.455 0.00 0.00 36.39 3.10
2507 2548 2.814336 GAGACCCATTTGTGTGGTTCTC 59.186 50.000 5.00 5.00 46.23 2.87
2508 2549 2.174639 TGAGACCCATTTGTGTGGTTCT 59.825 45.455 0.00 0.00 42.92 3.01
2509 2550 2.554032 CTGAGACCCATTTGTGTGGTTC 59.446 50.000 0.00 0.00 37.57 3.62
2519 2560 4.264083 ACAATTGATCCACTGAGACCCATT 60.264 41.667 13.59 0.00 0.00 3.16
2573 2614 9.851686 TCACATAAGAAGTCTGCCAATAAATAT 57.148 29.630 0.00 0.00 0.00 1.28
2584 2625 4.810790 AGACGGTTCACATAAGAAGTCTG 58.189 43.478 0.00 0.00 34.02 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.