Multiple sequence alignment - TraesCS3A01G309900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G309900 chr3A 100.000 6373 0 0 520 6892 547934051 547940423 0.000000e+00 11769.0
1 TraesCS3A01G309900 chr3A 90.036 552 34 11 3724 4270 25380885 25380350 0.000000e+00 695.0
2 TraesCS3A01G309900 chr3A 90.036 552 34 9 3724 4270 25396039 25395504 0.000000e+00 695.0
3 TraesCS3A01G309900 chr3A 100.000 277 0 0 1 277 547933532 547933808 4.770000e-141 512.0
4 TraesCS3A01G309900 chr3A 82.727 220 20 4 6691 6892 434434306 434434525 5.490000e-41 180.0
5 TraesCS3A01G309900 chr3A 80.365 219 24 11 6689 6889 19964662 19964879 1.550000e-31 148.0
6 TraesCS3A01G309900 chr3A 80.090 221 25 7 6691 6892 10313557 10313337 5.570000e-31 147.0
7 TraesCS3A01G309900 chr3A 88.596 114 13 0 6779 6892 727752964 727752851 9.320000e-29 139.0
8 TraesCS3A01G309900 chr3A 87.826 115 12 2 6779 6892 531907969 531908082 4.340000e-27 134.0
9 TraesCS3A01G309900 chr3A 77.727 220 31 6 6691 6892 587390061 587389842 1.210000e-22 119.0
10 TraesCS3A01G309900 chr3D 97.482 4925 93 17 1260 6164 94508964 94513877 0.000000e+00 8379.0
11 TraesCS3A01G309900 chr3D 95.573 497 11 7 771 1261 94508396 94508887 0.000000e+00 785.0
12 TraesCS3A01G309900 chr3D 93.382 136 6 1 6476 6611 94514613 94514745 1.520000e-46 198.0
13 TraesCS3A01G309900 chr3D 74.101 417 77 18 4772 5171 93024080 93024482 7.210000e-30 143.0
14 TraesCS3A01G309900 chr3D 83.735 166 12 7 6317 6475 94514340 94514497 7.210000e-30 143.0
15 TraesCS3A01G309900 chr3D 90.588 85 8 0 54 138 94507757 94507841 5.650000e-21 113.0
16 TraesCS3A01G309900 chr3B 93.168 2620 118 29 3586 6164 145314695 145317294 0.000000e+00 3790.0
17 TraesCS3A01G309900 chr3B 91.823 2299 127 26 1260 3530 145312216 145314481 0.000000e+00 3147.0
18 TraesCS3A01G309900 chr3B 91.417 501 29 9 772 1261 145311642 145312139 0.000000e+00 675.0
19 TraesCS3A01G309900 chr3B 85.185 162 11 7 6317 6475 145317947 145318098 3.330000e-33 154.0
20 TraesCS3A01G309900 chr3B 82.857 70 12 0 5102 5171 143282866 143282935 5.770000e-06 63.9
21 TraesCS3A01G309900 chr3B 82.857 70 12 0 5102 5171 143294342 143294273 5.770000e-06 63.9
22 TraesCS3A01G309900 chrUn 100.000 390 0 0 3263 3652 480013373 480012984 0.000000e+00 721.0
23 TraesCS3A01G309900 chrUn 87.179 117 12 2 6779 6892 252262179 252262295 5.610000e-26 130.0
24 TraesCS3A01G309900 chr4A 90.580 552 31 8 3724 4270 319829698 319829163 0.000000e+00 712.0
25 TraesCS3A01G309900 chr4A 90.563 551 31 9 3725 4270 488538314 488537780 0.000000e+00 710.0
26 TraesCS3A01G309900 chr4A 88.669 556 37 10 3726 4269 538889674 538889133 0.000000e+00 654.0
27 TraesCS3A01G309900 chr7A 90.399 552 32 9 3724 4270 439796358 439795823 0.000000e+00 706.0
28 TraesCS3A01G309900 chr2A 89.674 552 36 10 3724 4270 733337286 733337821 0.000000e+00 684.0
29 TraesCS3A01G309900 chr2A 79.911 224 27 9 6687 6892 676458369 676458146 1.550000e-31 148.0
30 TraesCS3A01G309900 chr2A 83.962 106 16 1 6682 6787 708391893 708391789 4.400000e-17 100.0
31 TraesCS3A01G309900 chr5B 88.398 543 45 8 3731 4267 24681665 24682195 7.540000e-179 638.0
32 TraesCS3A01G309900 chr6B 88.267 375 27 5 3900 4270 616935179 616934818 3.820000e-117 433.0
33 TraesCS3A01G309900 chr7B 81.081 222 24 10 6689 6892 538419747 538419968 1.990000e-35 161.0
34 TraesCS3A01G309900 chr5A 80.000 220 26 10 6691 6892 21174277 21174496 5.570000e-31 147.0
35 TraesCS3A01G309900 chr6A 79.545 220 27 9 6691 6892 451606519 451606300 2.590000e-29 141.0
36 TraesCS3A01G309900 chr1A 88.496 113 11 2 6779 6890 459158206 459158095 1.210000e-27 135.0
37 TraesCS3A01G309900 chr1A 88.496 113 11 2 6779 6890 459162683 459162572 1.210000e-27 135.0
38 TraesCS3A01G309900 chr2B 78.829 222 29 6 6689 6892 64187031 64186810 4.340000e-27 134.0
39 TraesCS3A01G309900 chr7D 78.182 220 30 6 6691 6892 2921178 2921397 2.610000e-24 124.0
40 TraesCS3A01G309900 chr5D 86.869 99 13 0 6689 6787 520372480 520372578 2.030000e-20 111.0
41 TraesCS3A01G309900 chr2D 86.139 101 14 0 6687 6787 577678717 577678817 7.310000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G309900 chr3A 547933532 547940423 6891 False 6140.5 11769 100.00000 1 6892 2 chr3A.!!$F4 6891
1 TraesCS3A01G309900 chr3A 25380350 25380885 535 True 695.0 695 90.03600 3724 4270 1 chr3A.!!$R2 546
2 TraesCS3A01G309900 chr3A 25395504 25396039 535 True 695.0 695 90.03600 3724 4270 1 chr3A.!!$R3 546
3 TraesCS3A01G309900 chr3D 94507757 94514745 6988 False 1923.6 8379 92.15200 54 6611 5 chr3D.!!$F2 6557
4 TraesCS3A01G309900 chr3B 145311642 145318098 6456 False 1941.5 3790 90.39825 772 6475 4 chr3B.!!$F2 5703
5 TraesCS3A01G309900 chr4A 319829163 319829698 535 True 712.0 712 90.58000 3724 4270 1 chr4A.!!$R1 546
6 TraesCS3A01G309900 chr4A 488537780 488538314 534 True 710.0 710 90.56300 3725 4270 1 chr4A.!!$R2 545
7 TraesCS3A01G309900 chr4A 538889133 538889674 541 True 654.0 654 88.66900 3726 4269 1 chr4A.!!$R3 543
8 TraesCS3A01G309900 chr7A 439795823 439796358 535 True 706.0 706 90.39900 3724 4270 1 chr7A.!!$R1 546
9 TraesCS3A01G309900 chr2A 733337286 733337821 535 False 684.0 684 89.67400 3724 4270 1 chr2A.!!$F1 546
10 TraesCS3A01G309900 chr5B 24681665 24682195 530 False 638.0 638 88.39800 3731 4267 1 chr5B.!!$F1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 658 0.242825 GCGGGGTAAGTTGCCTTTTC 59.757 55.000 10.05 0.0 31.89 2.29 F
1213 1224 0.036388 CTAAGCAAGCCCGGAAGTCA 60.036 55.000 0.73 0.0 0.00 3.41 F
2293 2403 0.038310 TTGGTTGTGGTGTGTGTCCA 59.962 50.000 0.00 0.0 0.00 4.02 F
2942 3059 1.603455 GGCTGCTTGGTGCCTTACA 60.603 57.895 0.00 0.0 45.26 2.41 F
3261 3390 0.957395 ATGTTGCTGGTGAAGGAGCG 60.957 55.000 0.00 0.0 38.09 5.03 F
4657 5004 0.834612 AGGAACACGGAACACCTCAA 59.165 50.000 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1597 1.299544 CTGTGACGCCACGTGTACA 60.300 57.895 15.65 10.11 46.06 2.90 R
2942 3059 0.394899 GCTCCCCAGCTGCTATGTTT 60.395 55.000 8.66 0.00 43.09 2.83 R
3261 3390 4.439289 GCAATTAATGTGCTTCTCAGGTCC 60.439 45.833 12.51 0.00 39.00 4.46 R
4325 4672 3.933332 CGTCCCTGAAAGATCACTTAACC 59.067 47.826 0.00 0.00 35.05 2.85 R
4893 5242 4.025813 GTCAATTTGCTGCGTTGTGAAATT 60.026 37.500 10.55 6.30 0.00 1.82 R
6466 7432 0.037232 ACTACCAGGCAAGTTCTCGC 60.037 55.000 0.00 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.824305 AATGTGCATAACTTGATATAGGCC 57.176 37.500 0.00 0.00 0.00 5.19
24 25 5.567037 TGTGCATAACTTGATATAGGCCT 57.433 39.130 11.78 11.78 0.00 5.19
25 26 6.680148 TGTGCATAACTTGATATAGGCCTA 57.320 37.500 16.60 16.60 0.00 3.93
26 27 7.257790 TGTGCATAACTTGATATAGGCCTAT 57.742 36.000 28.00 28.00 0.00 2.57
27 28 7.689299 TGTGCATAACTTGATATAGGCCTATT 58.311 34.615 29.91 17.31 0.00 1.73
28 29 7.824289 TGTGCATAACTTGATATAGGCCTATTC 59.176 37.037 29.91 23.74 0.00 1.75
29 30 7.010552 GTGCATAACTTGATATAGGCCTATTCG 59.989 40.741 29.91 15.52 0.00 3.34
30 31 6.480320 GCATAACTTGATATAGGCCTATTCGG 59.520 42.308 29.91 21.07 0.00 4.30
82 83 3.612860 CGTTCTTTCAAGGACCTATGACG 59.387 47.826 0.00 0.00 30.37 4.35
96 97 4.025480 ACCTATGACGTTTCGTTTTGTCAC 60.025 41.667 0.00 0.00 43.42 3.67
98 99 3.377434 TGACGTTTCGTTTTGTCACAG 57.623 42.857 0.00 0.00 41.37 3.66
106 107 0.868406 GTTTTGTCACAGGAGGAGCG 59.132 55.000 0.00 0.00 0.00 5.03
125 126 0.915364 GGGAAGCTTCTGATCTGGGT 59.085 55.000 25.05 0.00 0.00 4.51
130 131 4.331108 GAAGCTTCTGATCTGGGTTTTCT 58.669 43.478 19.44 0.00 0.00 2.52
131 132 4.379302 AGCTTCTGATCTGGGTTTTCTT 57.621 40.909 0.00 0.00 0.00 2.52
156 157 6.358974 CCCCCATGTGTTTTCTTTCTATTT 57.641 37.500 0.00 0.00 0.00 1.40
157 158 7.475137 CCCCCATGTGTTTTCTTTCTATTTA 57.525 36.000 0.00 0.00 0.00 1.40
158 159 8.078060 CCCCCATGTGTTTTCTTTCTATTTAT 57.922 34.615 0.00 0.00 0.00 1.40
159 160 7.981225 CCCCCATGTGTTTTCTTTCTATTTATG 59.019 37.037 0.00 0.00 0.00 1.90
160 161 8.531146 CCCCATGTGTTTTCTTTCTATTTATGT 58.469 33.333 0.00 0.00 0.00 2.29
161 162 9.927668 CCCATGTGTTTTCTTTCTATTTATGTT 57.072 29.630 0.00 0.00 0.00 2.71
198 199 9.787435 AGTTTTGTTTAGGTTTTTCCTTTTTCT 57.213 25.926 0.00 0.00 45.67 2.52
202 203 9.562408 TTGTTTAGGTTTTTCCTTTTTCTTTGT 57.438 25.926 0.00 0.00 45.67 2.83
203 204 9.210329 TGTTTAGGTTTTTCCTTTTTCTTTGTC 57.790 29.630 0.00 0.00 45.67 3.18
204 205 9.431887 GTTTAGGTTTTTCCTTTTTCTTTGTCT 57.568 29.630 0.00 0.00 45.67 3.41
207 208 8.918202 AGGTTTTTCCTTTTTCTTTGTCTTTT 57.082 26.923 0.00 0.00 45.67 2.27
208 209 9.349713 AGGTTTTTCCTTTTTCTTTGTCTTTTT 57.650 25.926 0.00 0.00 45.67 1.94
594 595 6.656314 AAAAACTGTTTTCCGTTTCATTCC 57.344 33.333 17.94 0.00 36.50 3.01
595 596 5.592104 AAACTGTTTTCCGTTTCATTCCT 57.408 34.783 0.00 0.00 33.21 3.36
596 597 4.568152 ACTGTTTTCCGTTTCATTCCTG 57.432 40.909 0.00 0.00 0.00 3.86
597 598 3.951680 ACTGTTTTCCGTTTCATTCCTGT 59.048 39.130 0.00 0.00 0.00 4.00
598 599 4.202010 ACTGTTTTCCGTTTCATTCCTGTG 60.202 41.667 0.00 0.00 0.00 3.66
599 600 3.948473 TGTTTTCCGTTTCATTCCTGTGA 59.052 39.130 0.00 0.00 0.00 3.58
600 601 4.399618 TGTTTTCCGTTTCATTCCTGTGAA 59.600 37.500 0.00 0.00 36.38 3.18
601 602 4.561735 TTTCCGTTTCATTCCTGTGAAC 57.438 40.909 0.00 0.00 37.80 3.18
602 603 2.500229 TCCGTTTCATTCCTGTGAACC 58.500 47.619 0.00 0.00 37.80 3.62
603 604 2.158740 TCCGTTTCATTCCTGTGAACCA 60.159 45.455 0.00 0.00 37.80 3.67
604 605 2.226437 CCGTTTCATTCCTGTGAACCAG 59.774 50.000 0.00 0.00 37.80 4.00
605 606 2.878406 CGTTTCATTCCTGTGAACCAGT 59.122 45.455 0.00 0.00 39.74 4.00
606 607 3.315191 CGTTTCATTCCTGTGAACCAGTT 59.685 43.478 0.00 0.00 39.74 3.16
607 608 4.513692 CGTTTCATTCCTGTGAACCAGTTA 59.486 41.667 0.00 0.00 39.74 2.24
608 609 5.560183 CGTTTCATTCCTGTGAACCAGTTAC 60.560 44.000 0.00 0.00 39.74 2.50
609 610 4.974645 TCATTCCTGTGAACCAGTTACT 57.025 40.909 0.00 0.00 39.74 2.24
610 611 5.304686 TCATTCCTGTGAACCAGTTACTT 57.695 39.130 0.00 0.00 39.74 2.24
611 612 5.690865 TCATTCCTGTGAACCAGTTACTTT 58.309 37.500 0.00 0.00 39.74 2.66
612 613 6.126409 TCATTCCTGTGAACCAGTTACTTTT 58.874 36.000 0.00 0.00 39.74 2.27
613 614 6.605594 TCATTCCTGTGAACCAGTTACTTTTT 59.394 34.615 0.00 0.00 39.74 1.94
651 652 3.969995 TTTTTGCGGGGTAAGTTGC 57.030 47.368 0.00 0.00 0.00 4.17
652 653 0.389757 TTTTTGCGGGGTAAGTTGCC 59.610 50.000 0.50 0.50 0.00 4.52
653 654 0.468400 TTTTGCGGGGTAAGTTGCCT 60.468 50.000 10.05 0.00 0.00 4.75
654 655 0.468400 TTTGCGGGGTAAGTTGCCTT 60.468 50.000 10.05 0.00 34.56 4.35
655 656 0.468400 TTGCGGGGTAAGTTGCCTTT 60.468 50.000 10.05 0.00 31.89 3.11
656 657 0.468400 TGCGGGGTAAGTTGCCTTTT 60.468 50.000 10.05 0.00 31.89 2.27
657 658 0.242825 GCGGGGTAAGTTGCCTTTTC 59.757 55.000 10.05 0.00 31.89 2.29
658 659 1.905637 CGGGGTAAGTTGCCTTTTCT 58.094 50.000 10.05 0.00 31.89 2.52
659 660 2.235891 CGGGGTAAGTTGCCTTTTCTT 58.764 47.619 10.05 0.00 31.89 2.52
660 661 2.626266 CGGGGTAAGTTGCCTTTTCTTT 59.374 45.455 10.05 0.00 31.89 2.52
661 662 3.822167 CGGGGTAAGTTGCCTTTTCTTTA 59.178 43.478 10.05 0.00 31.89 1.85
662 663 4.082949 CGGGGTAAGTTGCCTTTTCTTTAG 60.083 45.833 10.05 0.00 31.89 1.85
663 664 4.219944 GGGGTAAGTTGCCTTTTCTTTAGG 59.780 45.833 10.05 0.00 35.80 2.69
679 680 7.506328 TTCTTTAGGCTTGAGAAAAGTTACC 57.494 36.000 9.09 0.00 32.15 2.85
680 681 6.597562 TCTTTAGGCTTGAGAAAAGTTACCA 58.402 36.000 0.00 0.00 32.15 3.25
682 683 4.439253 AGGCTTGAGAAAAGTTACCAGT 57.561 40.909 0.00 0.00 0.00 4.00
683 684 4.793201 AGGCTTGAGAAAAGTTACCAGTT 58.207 39.130 0.00 0.00 0.00 3.16
684 685 4.580580 AGGCTTGAGAAAAGTTACCAGTTG 59.419 41.667 0.00 0.00 0.00 3.16
685 686 4.290969 GCTTGAGAAAAGTTACCAGTTGC 58.709 43.478 0.00 0.00 0.00 4.17
686 687 4.036852 GCTTGAGAAAAGTTACCAGTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
687 688 5.499139 TTGAGAAAAGTTACCAGTTGCTG 57.501 39.130 0.00 0.00 0.00 4.41
696 697 2.515398 CAGTTGCTGGGGTGGTGA 59.485 61.111 0.00 0.00 0.00 4.02
697 698 1.601759 CAGTTGCTGGGGTGGTGAG 60.602 63.158 0.00 0.00 0.00 3.51
698 699 2.985847 GTTGCTGGGGTGGTGAGC 60.986 66.667 0.00 0.00 0.00 4.26
699 700 4.641645 TTGCTGGGGTGGTGAGCG 62.642 66.667 0.00 0.00 35.36 5.03
701 702 4.767255 GCTGGGGTGGTGAGCGAG 62.767 72.222 0.00 0.00 0.00 5.03
702 703 3.314331 CTGGGGTGGTGAGCGAGT 61.314 66.667 0.00 0.00 0.00 4.18
703 704 2.847234 TGGGGTGGTGAGCGAGTT 60.847 61.111 0.00 0.00 0.00 3.01
704 705 2.397413 CTGGGGTGGTGAGCGAGTTT 62.397 60.000 0.00 0.00 0.00 2.66
705 706 1.228154 GGGGTGGTGAGCGAGTTTT 60.228 57.895 0.00 0.00 0.00 2.43
706 707 0.822121 GGGGTGGTGAGCGAGTTTTT 60.822 55.000 0.00 0.00 0.00 1.94
770 771 0.886490 AAACAGGTGAGCGAGCTTGG 60.886 55.000 2.37 0.00 0.00 3.61
771 772 1.758440 AACAGGTGAGCGAGCTTGGA 61.758 55.000 2.37 0.00 0.00 3.53
772 773 1.447489 CAGGTGAGCGAGCTTGGAG 60.447 63.158 2.37 0.00 0.00 3.86
773 774 2.817396 GGTGAGCGAGCTTGGAGC 60.817 66.667 2.37 0.00 42.84 4.70
774 775 2.047844 GTGAGCGAGCTTGGAGCA 60.048 61.111 2.37 0.00 45.56 4.26
775 776 2.099431 GTGAGCGAGCTTGGAGCAG 61.099 63.158 2.37 0.00 45.56 4.24
776 777 2.278330 TGAGCGAGCTTGGAGCAGA 61.278 57.895 2.37 0.00 45.56 4.26
777 778 1.519013 GAGCGAGCTTGGAGCAGAG 60.519 63.158 2.37 0.00 45.56 3.35
778 779 2.511145 GCGAGCTTGGAGCAGAGG 60.511 66.667 2.37 0.00 45.56 3.69
779 780 2.977178 CGAGCTTGGAGCAGAGGT 59.023 61.111 2.47 0.00 45.56 3.85
780 781 1.294780 CGAGCTTGGAGCAGAGGTT 59.705 57.895 2.47 0.00 45.56 3.50
910 921 7.043325 GCACGATAAAACTGAACTATCTCGAAT 60.043 37.037 0.00 0.00 0.00 3.34
951 962 4.828296 TAGTCTCCGCCCCGTCCC 62.828 72.222 0.00 0.00 0.00 4.46
1118 1129 2.024846 CCAACACTCTCCTCCTCCTCTA 60.025 54.545 0.00 0.00 0.00 2.43
1213 1224 0.036388 CTAAGCAAGCCCGGAAGTCA 60.036 55.000 0.73 0.00 0.00 3.41
1218 1229 1.880646 GCAAGCCCGGAAGTCACTTTA 60.881 52.381 0.73 0.00 0.00 1.85
1221 1232 4.258543 CAAGCCCGGAAGTCACTTTAATA 58.741 43.478 0.73 0.00 0.00 0.98
1271 1361 4.096682 GTGTCTCTTGCCTGGTACTAGTAG 59.903 50.000 1.87 0.00 0.00 2.57
1291 1381 1.153353 CGTTTTATCGTGCCCACTGT 58.847 50.000 0.00 0.00 0.00 3.55
1427 1521 9.295825 TGAAATACATTGTTCAAGATAGTTGGT 57.704 29.630 0.00 0.00 30.93 3.67
1571 1678 2.281539 TCGTGTGGAGTAGAGACCAA 57.718 50.000 0.00 0.00 37.94 3.67
1760 1867 3.127895 TGCGATTTGCCAAACTACCATAC 59.872 43.478 0.00 0.00 45.60 2.39
1817 1924 3.572682 TGTCAACGTGGACTAATCACTCT 59.427 43.478 23.20 0.00 38.61 3.24
1820 1927 3.594603 ACGTGGACTAATCACTCTTGG 57.405 47.619 0.00 0.00 33.31 3.61
1853 1960 5.466127 AGGTCCAACATATTTGTATGGGT 57.534 39.130 13.38 0.00 35.99 4.51
1854 1961 6.584471 AGGTCCAACATATTTGTATGGGTA 57.416 37.500 13.38 0.00 35.99 3.69
2223 2333 6.522946 ACTAGTTAGGTTTGTGGTTCTTCTC 58.477 40.000 0.00 0.00 0.00 2.87
2293 2403 0.038310 TTGGTTGTGGTGTGTGTCCA 59.962 50.000 0.00 0.00 0.00 4.02
2444 2556 2.039879 TGGCTTAGTGGTTTTCCTCTCC 59.960 50.000 0.00 0.00 42.07 3.71
2504 2616 4.405358 AGCACTTGTGGATTTTGGAGAAAA 59.595 37.500 2.81 0.00 35.52 2.29
2572 2684 2.554893 TGGCGTGTATTTTCCAACCTTC 59.445 45.455 0.00 0.00 0.00 3.46
2754 2866 2.223688 TGAACAGGTTGACCATTTTGCG 60.224 45.455 2.56 0.00 38.89 4.85
2942 3059 1.603455 GGCTGCTTGGTGCCTTACA 60.603 57.895 0.00 0.00 45.26 2.41
3261 3390 0.957395 ATGTTGCTGGTGAAGGAGCG 60.957 55.000 0.00 0.00 38.09 5.03
3656 3957 2.368439 ACATTTCATGGCATGCGTACT 58.632 42.857 22.56 2.00 33.60 2.73
4096 4435 6.813649 GCTTTCTGACATGTCTTCACTGTATA 59.186 38.462 25.55 1.39 0.00 1.47
4097 4436 7.493971 GCTTTCTGACATGTCTTCACTGTATAT 59.506 37.037 25.55 0.00 0.00 0.86
4098 4437 9.376075 CTTTCTGACATGTCTTCACTGTATATT 57.624 33.333 25.55 0.00 0.00 1.28
4099 4438 9.725019 TTTCTGACATGTCTTCACTGTATATTT 57.275 29.630 25.55 0.00 0.00 1.40
4398 4745 6.702282 GGTAGTGGTATATCTTTCAGCACTTC 59.298 42.308 11.40 7.45 45.90 3.01
4502 4849 2.325583 TGCTCATTCCGGTATTGTCC 57.674 50.000 0.00 0.00 0.00 4.02
4528 4875 8.948145 CATTTGTTTCTCTCTCTCAATCTCATT 58.052 33.333 0.00 0.00 0.00 2.57
4579 4926 2.825532 TGCTTTCCCTGGAAATGCTTAC 59.174 45.455 22.17 8.58 42.34 2.34
4657 5004 0.834612 AGGAACACGGAACACCTCAA 59.165 50.000 0.00 0.00 0.00 3.02
4717 5064 4.927978 TGGTTGTCAATTTGGTAACCAG 57.072 40.909 22.96 0.00 44.08 4.00
4766 5115 5.636903 AGAGGCATGCTTTTATTAGGAGA 57.363 39.130 18.92 0.00 0.00 3.71
4893 5242 5.331906 TGTTACTGTGGGGTAGTGTATGTA 58.668 41.667 0.00 0.00 0.00 2.29
5092 5442 2.612212 CACGAGGTACAGTTTGCAAGTT 59.388 45.455 0.00 0.00 0.00 2.66
5528 5881 6.730447 TCCAGGATTCATAAATTTGGTCAGA 58.270 36.000 0.00 0.00 34.23 3.27
5555 5908 4.722194 CTGATATAGAGAGCGCAAGACTC 58.278 47.826 11.47 12.62 40.67 3.36
5610 5963 2.011947 ACCGCGTTTTTAGCTATTCCC 58.988 47.619 4.92 0.00 0.00 3.97
6050 6413 9.436043 TGTGTAACTTGGCCATCTTCATGGATA 62.436 40.741 6.09 0.00 45.46 2.59
6125 6488 3.076621 CCGTAGTACAGTGTGACCTGTA 58.923 50.000 5.88 9.03 43.71 2.74
6134 6497 6.665992 ACAGTGTGACCTGTATAAGAAGAA 57.334 37.500 0.00 0.00 43.71 2.52
6165 6529 8.962884 TTTGAGTCTTTGAGCTATATATTGCA 57.037 30.769 19.16 0.00 0.00 4.08
6166 6530 7.953158 TGAGTCTTTGAGCTATATATTGCAC 57.047 36.000 19.16 14.07 0.00 4.57
6167 6531 7.500141 TGAGTCTTTGAGCTATATATTGCACA 58.500 34.615 19.16 16.24 0.00 4.57
6168 6532 7.986889 TGAGTCTTTGAGCTATATATTGCACAA 59.013 33.333 21.27 21.27 37.34 3.33
6169 6533 8.147642 AGTCTTTGAGCTATATATTGCACAAC 57.852 34.615 23.58 16.50 38.32 3.32
6170 6534 7.227512 AGTCTTTGAGCTATATATTGCACAACC 59.772 37.037 23.58 16.72 38.32 3.77
6171 6535 7.227512 GTCTTTGAGCTATATATTGCACAACCT 59.772 37.037 23.58 4.31 38.32 3.50
6172 6536 7.442364 TCTTTGAGCTATATATTGCACAACCTC 59.558 37.037 23.58 12.00 38.32 3.85
6173 6537 5.551233 TGAGCTATATATTGCACAACCTCC 58.449 41.667 19.16 1.70 0.00 4.30
6174 6538 4.569943 AGCTATATATTGCACAACCTCCG 58.430 43.478 19.16 0.00 0.00 4.63
6175 6539 4.040461 AGCTATATATTGCACAACCTCCGT 59.960 41.667 19.16 0.00 0.00 4.69
6176 6540 4.389077 GCTATATATTGCACAACCTCCGTC 59.611 45.833 13.36 0.00 0.00 4.79
6177 6541 2.038387 ATATTGCACAACCTCCGTCC 57.962 50.000 0.00 0.00 0.00 4.79
6178 6542 0.687920 TATTGCACAACCTCCGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
6179 6543 0.606401 ATTGCACAACCTCCGTCCAG 60.606 55.000 0.00 0.00 0.00 3.86
6180 6544 1.691195 TTGCACAACCTCCGTCCAGA 61.691 55.000 0.00 0.00 0.00 3.86
6181 6545 1.070786 GCACAACCTCCGTCCAGAA 59.929 57.895 0.00 0.00 0.00 3.02
6182 6546 0.321653 GCACAACCTCCGTCCAGAAT 60.322 55.000 0.00 0.00 0.00 2.40
6183 6547 1.882352 GCACAACCTCCGTCCAGAATT 60.882 52.381 0.00 0.00 0.00 2.17
6184 6548 2.614481 GCACAACCTCCGTCCAGAATTA 60.614 50.000 0.00 0.00 0.00 1.40
6185 6549 3.670625 CACAACCTCCGTCCAGAATTAA 58.329 45.455 0.00 0.00 0.00 1.40
6186 6550 3.435671 CACAACCTCCGTCCAGAATTAAC 59.564 47.826 0.00 0.00 0.00 2.01
6187 6551 3.326880 ACAACCTCCGTCCAGAATTAACT 59.673 43.478 0.00 0.00 0.00 2.24
6188 6552 3.611766 ACCTCCGTCCAGAATTAACTG 57.388 47.619 0.00 0.00 37.61 3.16
6189 6553 2.904434 ACCTCCGTCCAGAATTAACTGT 59.096 45.455 0.00 0.00 36.30 3.55
6190 6554 3.056035 ACCTCCGTCCAGAATTAACTGTC 60.056 47.826 0.00 0.00 36.30 3.51
6191 6555 3.179830 CTCCGTCCAGAATTAACTGTCG 58.820 50.000 0.00 0.00 36.30 4.35
6192 6556 2.821378 TCCGTCCAGAATTAACTGTCGA 59.179 45.455 0.00 0.00 36.39 4.20
6193 6557 3.446161 TCCGTCCAGAATTAACTGTCGAT 59.554 43.478 0.00 0.00 36.39 3.59
6194 6558 3.551890 CCGTCCAGAATTAACTGTCGATG 59.448 47.826 0.00 0.00 36.39 3.84
6195 6559 4.421058 CGTCCAGAATTAACTGTCGATGA 58.579 43.478 0.00 0.00 36.39 2.92
6196 6560 4.862574 CGTCCAGAATTAACTGTCGATGAA 59.137 41.667 0.00 0.00 36.39 2.57
6197 6561 5.347635 CGTCCAGAATTAACTGTCGATGAAA 59.652 40.000 0.00 0.00 36.39 2.69
6198 6562 6.036083 CGTCCAGAATTAACTGTCGATGAAAT 59.964 38.462 0.00 0.00 36.39 2.17
6199 6563 7.222031 CGTCCAGAATTAACTGTCGATGAAATA 59.778 37.037 0.00 0.00 36.39 1.40
6200 6564 8.879759 GTCCAGAATTAACTGTCGATGAAATAA 58.120 33.333 0.00 0.00 36.30 1.40
6201 6565 9.098355 TCCAGAATTAACTGTCGATGAAATAAG 57.902 33.333 0.00 0.00 36.30 1.73
6202 6566 8.883731 CCAGAATTAACTGTCGATGAAATAAGT 58.116 33.333 0.00 0.00 36.30 2.24
6203 6567 9.694520 CAGAATTAACTGTCGATGAAATAAGTG 57.305 33.333 0.00 0.00 33.73 3.16
6204 6568 9.436957 AGAATTAACTGTCGATGAAATAAGTGT 57.563 29.630 0.00 0.00 0.00 3.55
6210 6574 9.737427 AACTGTCGATGAAATAAGTGTATCTAG 57.263 33.333 0.00 0.00 0.00 2.43
6211 6575 9.121658 ACTGTCGATGAAATAAGTGTATCTAGA 57.878 33.333 0.00 0.00 0.00 2.43
6213 6577 9.899226 TGTCGATGAAATAAGTGTATCTAGATG 57.101 33.333 15.79 0.00 0.00 2.90
6214 6578 8.855279 GTCGATGAAATAAGTGTATCTAGATGC 58.145 37.037 15.79 14.54 0.00 3.91
6215 6579 7.750903 TCGATGAAATAAGTGTATCTAGATGCG 59.249 37.037 15.79 0.00 0.00 4.73
6216 6580 7.539022 CGATGAAATAAGTGTATCTAGATGCGT 59.461 37.037 15.79 6.16 0.00 5.24
6217 6581 9.197694 GATGAAATAAGTGTATCTAGATGCGTT 57.802 33.333 15.79 13.12 0.00 4.84
6218 6582 8.942338 TGAAATAAGTGTATCTAGATGCGTTT 57.058 30.769 15.79 13.52 0.00 3.60
6219 6583 9.378551 TGAAATAAGTGTATCTAGATGCGTTTT 57.621 29.630 15.79 11.33 0.00 2.43
6223 6587 7.757097 AAGTGTATCTAGATGCGTTTTAGTG 57.243 36.000 15.79 0.00 0.00 2.74
6224 6588 6.864342 AGTGTATCTAGATGCGTTTTAGTGT 58.136 36.000 15.79 0.00 0.00 3.55
6225 6589 6.752351 AGTGTATCTAGATGCGTTTTAGTGTG 59.248 38.462 15.79 0.00 0.00 3.82
6226 6590 6.019801 GTGTATCTAGATGCGTTTTAGTGTGG 60.020 42.308 15.79 0.00 0.00 4.17
6227 6591 4.794278 TCTAGATGCGTTTTAGTGTGGA 57.206 40.909 0.00 0.00 0.00 4.02
6228 6592 5.339008 TCTAGATGCGTTTTAGTGTGGAT 57.661 39.130 0.00 0.00 0.00 3.41
6229 6593 6.459670 TCTAGATGCGTTTTAGTGTGGATA 57.540 37.500 0.00 0.00 0.00 2.59
6230 6594 6.270815 TCTAGATGCGTTTTAGTGTGGATAC 58.729 40.000 0.00 0.00 0.00 2.24
6244 6608 3.885724 TGGATACACTCATTTCAGCGA 57.114 42.857 0.00 0.00 46.17 4.93
6245 6609 3.521560 TGGATACACTCATTTCAGCGAC 58.478 45.455 0.00 0.00 46.17 5.19
6246 6610 3.056179 TGGATACACTCATTTCAGCGACA 60.056 43.478 0.00 0.00 46.17 4.35
6247 6611 3.553511 GGATACACTCATTTCAGCGACAG 59.446 47.826 0.00 0.00 0.00 3.51
6248 6612 2.533266 ACACTCATTTCAGCGACAGT 57.467 45.000 0.00 0.00 0.00 3.55
6249 6613 3.660501 ACACTCATTTCAGCGACAGTA 57.339 42.857 0.00 0.00 0.00 2.74
6250 6614 3.318017 ACACTCATTTCAGCGACAGTAC 58.682 45.455 0.00 0.00 0.00 2.73
6251 6615 2.342651 CACTCATTTCAGCGACAGTACG 59.657 50.000 0.00 0.00 0.00 3.67
6252 6616 1.920574 CTCATTTCAGCGACAGTACGG 59.079 52.381 0.00 0.00 0.00 4.02
6253 6617 1.542472 TCATTTCAGCGACAGTACGGA 59.458 47.619 0.00 0.00 0.00 4.69
6254 6618 1.920574 CATTTCAGCGACAGTACGGAG 59.079 52.381 0.00 0.00 0.00 4.63
6255 6619 0.242825 TTTCAGCGACAGTACGGAGG 59.757 55.000 0.00 0.00 0.00 4.30
6256 6620 1.592400 TTCAGCGACAGTACGGAGGG 61.592 60.000 0.00 0.00 0.00 4.30
6257 6621 2.044555 CAGCGACAGTACGGAGGGA 61.045 63.158 0.00 0.00 0.00 4.20
6258 6622 1.749638 AGCGACAGTACGGAGGGAG 60.750 63.158 0.00 0.00 0.00 4.30
6261 6625 1.297664 CGACAGTACGGAGGGAGTAG 58.702 60.000 0.00 0.00 0.00 2.57
6276 6640 5.767670 AGGGAGTAGTAGAGAAATGCTGTA 58.232 41.667 0.00 0.00 0.00 2.74
6288 6652 2.064573 ATGCTGTAAAAACGCTTGCC 57.935 45.000 0.00 0.00 0.00 4.52
6290 6654 1.001745 GCTGTAAAAACGCTTGCCGG 61.002 55.000 0.00 0.00 42.52 6.13
6295 6659 0.173708 AAAAACGCTTGCCGGAAACA 59.826 45.000 5.05 0.00 42.52 2.83
6296 6660 0.387565 AAAACGCTTGCCGGAAACAT 59.612 45.000 5.05 0.00 42.52 2.71
6319 6683 2.094234 TGCGACTAGCTTTGCATAGTCA 60.094 45.455 19.93 4.83 45.36 3.41
6320 6684 2.537625 GCGACTAGCTTTGCATAGTCAG 59.462 50.000 19.93 14.73 45.36 3.51
6321 6685 2.537625 CGACTAGCTTTGCATAGTCAGC 59.462 50.000 19.93 9.27 45.36 4.26
6349 7309 1.375523 CAGCGGGTGGTACAAGGAC 60.376 63.158 0.00 0.00 44.16 3.85
6390 7350 1.835927 GACTCCAGCAGGTGAAGGCT 61.836 60.000 4.01 0.00 42.06 4.58
6391 7351 1.078567 CTCCAGCAGGTGAAGGCTC 60.079 63.158 0.00 0.00 38.56 4.70
6392 7352 1.834856 CTCCAGCAGGTGAAGGCTCA 61.835 60.000 0.00 0.00 38.56 4.26
6417 7383 4.238385 CGCGGTACATCGGGTATG 57.762 61.111 0.00 0.00 41.74 2.39
6419 7385 1.666872 GCGGTACATCGGGTATGGC 60.667 63.158 0.00 0.00 40.16 4.40
6436 7402 2.887568 CCATGACTGCTCGGCGAC 60.888 66.667 4.99 3.81 0.00 5.19
6437 7403 2.125952 CATGACTGCTCGGCGACA 60.126 61.111 4.99 8.77 0.00 4.35
6438 7404 2.163390 CATGACTGCTCGGCGACAG 61.163 63.158 26.50 26.50 39.86 3.51
6439 7405 3.362399 ATGACTGCTCGGCGACAGG 62.362 63.158 29.26 14.99 38.25 4.00
6486 7570 1.714794 CGAGAACTTGCCTGGTAGTG 58.285 55.000 4.70 0.00 0.00 2.74
6544 7628 4.662961 TGCCAGAGCACCGTGTCG 62.663 66.667 0.00 0.00 46.52 4.35
6548 7632 4.702081 AGAGCACCGTGTCGACGC 62.702 66.667 19.11 19.11 44.68 5.19
6556 7640 1.727022 CGTGTCGACGCGGTTTACT 60.727 57.895 36.83 0.00 45.14 2.24
6616 7700 4.357947 GCGCACCTGACCACTCGA 62.358 66.667 0.30 0.00 0.00 4.04
6617 7701 2.430921 CGCACCTGACCACTCGAC 60.431 66.667 0.00 0.00 0.00 4.20
6618 7702 2.734591 GCACCTGACCACTCGACA 59.265 61.111 0.00 0.00 0.00 4.35
6619 7703 1.293498 GCACCTGACCACTCGACAT 59.707 57.895 0.00 0.00 0.00 3.06
6620 7704 1.016130 GCACCTGACCACTCGACATG 61.016 60.000 0.00 0.00 0.00 3.21
6621 7705 0.390340 CACCTGACCACTCGACATGG 60.390 60.000 9.06 9.06 43.43 3.66
6622 7706 1.448540 CCTGACCACTCGACATGGC 60.449 63.158 10.34 0.00 41.31 4.40
6623 7707 1.807165 CTGACCACTCGACATGGCG 60.807 63.158 16.88 16.88 41.31 5.69
6624 7708 3.188786 GACCACTCGACATGGCGC 61.189 66.667 18.42 0.00 41.31 6.53
6625 7709 4.760047 ACCACTCGACATGGCGCC 62.760 66.667 22.73 22.73 41.31 6.53
6639 7723 3.726517 CGCCCGCCTGTTGACTTG 61.727 66.667 0.00 0.00 0.00 3.16
6640 7724 2.594592 GCCCGCCTGTTGACTTGT 60.595 61.111 0.00 0.00 0.00 3.16
6641 7725 2.193536 GCCCGCCTGTTGACTTGTT 61.194 57.895 0.00 0.00 0.00 2.83
6642 7726 1.734388 GCCCGCCTGTTGACTTGTTT 61.734 55.000 0.00 0.00 0.00 2.83
6643 7727 0.744281 CCCGCCTGTTGACTTGTTTT 59.256 50.000 0.00 0.00 0.00 2.43
6644 7728 1.269051 CCCGCCTGTTGACTTGTTTTC 60.269 52.381 0.00 0.00 0.00 2.29
6645 7729 1.596954 CCGCCTGTTGACTTGTTTTCG 60.597 52.381 0.00 0.00 0.00 3.46
6646 7730 1.477105 GCCTGTTGACTTGTTTTCGC 58.523 50.000 0.00 0.00 0.00 4.70
6647 7731 1.065551 GCCTGTTGACTTGTTTTCGCT 59.934 47.619 0.00 0.00 0.00 4.93
6648 7732 2.719798 CCTGTTGACTTGTTTTCGCTG 58.280 47.619 0.00 0.00 0.00 5.18
6649 7733 2.111756 CTGTTGACTTGTTTTCGCTGC 58.888 47.619 0.00 0.00 0.00 5.25
6650 7734 1.112459 GTTGACTTGTTTTCGCTGCG 58.888 50.000 17.25 17.25 0.00 5.18
6651 7735 0.591236 TTGACTTGTTTTCGCTGCGC 60.591 50.000 18.65 0.00 0.00 6.09
6652 7736 1.725973 GACTTGTTTTCGCTGCGCC 60.726 57.895 18.65 5.57 0.00 6.53
6653 7737 2.331098 CTTGTTTTCGCTGCGCCA 59.669 55.556 18.65 8.22 0.00 5.69
6654 7738 2.010817 CTTGTTTTCGCTGCGCCAC 61.011 57.895 18.65 13.47 0.00 5.01
6655 7739 3.798639 TTGTTTTCGCTGCGCCACG 62.799 57.895 18.65 9.20 0.00 4.94
6682 7766 4.143333 GCGCCCTAGCTTCGTCCA 62.143 66.667 0.00 0.00 36.60 4.02
6683 7767 2.202756 CGCCCTAGCTTCGTCCAC 60.203 66.667 0.00 0.00 36.60 4.02
6684 7768 2.187163 GCCCTAGCTTCGTCCACC 59.813 66.667 0.00 0.00 35.50 4.61
6685 7769 2.359967 GCCCTAGCTTCGTCCACCT 61.360 63.158 0.00 0.00 35.50 4.00
6686 7770 1.817209 CCCTAGCTTCGTCCACCTC 59.183 63.158 0.00 0.00 0.00 3.85
6687 7771 0.970937 CCCTAGCTTCGTCCACCTCA 60.971 60.000 0.00 0.00 0.00 3.86
6688 7772 1.115467 CCTAGCTTCGTCCACCTCAT 58.885 55.000 0.00 0.00 0.00 2.90
6689 7773 2.307768 CCTAGCTTCGTCCACCTCATA 58.692 52.381 0.00 0.00 0.00 2.15
6690 7774 2.693591 CCTAGCTTCGTCCACCTCATAA 59.306 50.000 0.00 0.00 0.00 1.90
6691 7775 2.969628 AGCTTCGTCCACCTCATAAG 57.030 50.000 0.00 0.00 0.00 1.73
6705 7789 5.398603 CCTCATAAGGCTAGTCATAGTGG 57.601 47.826 0.00 0.00 35.37 4.00
6706 7790 5.080337 CCTCATAAGGCTAGTCATAGTGGA 58.920 45.833 0.00 0.00 35.37 4.02
6707 7791 5.540337 CCTCATAAGGCTAGTCATAGTGGAA 59.460 44.000 0.00 0.00 35.37 3.53
6708 7792 6.406692 TCATAAGGCTAGTCATAGTGGAAC 57.593 41.667 0.00 0.00 0.00 3.62
6709 7793 8.615225 CCTCATAAGGCTAGTCATAGTGGAACT 61.615 44.444 0.00 0.00 43.57 3.01
6728 7812 9.733219 GTGGAACTAACTTAGCTAGTAACATAG 57.267 37.037 0.00 0.00 35.54 2.23
6738 7822 5.961395 GCTAGTAACATAGCGCACTTTAA 57.039 39.130 11.47 0.00 38.90 1.52
6739 7823 6.526566 GCTAGTAACATAGCGCACTTTAAT 57.473 37.500 11.47 3.25 38.90 1.40
6740 7824 6.945072 GCTAGTAACATAGCGCACTTTAATT 58.055 36.000 11.47 0.00 38.90 1.40
6741 7825 7.407337 GCTAGTAACATAGCGCACTTTAATTT 58.593 34.615 11.47 0.00 38.90 1.82
6742 7826 7.908601 GCTAGTAACATAGCGCACTTTAATTTT 59.091 33.333 11.47 0.00 38.90 1.82
6743 7827 9.769093 CTAGTAACATAGCGCACTTTAATTTTT 57.231 29.630 11.47 0.00 0.00 1.94
6772 7856 9.935241 TTGCTTATATGGCAAAAAGTTAATGAA 57.065 25.926 13.16 0.00 45.05 2.57
6773 7857 9.935241 TGCTTATATGGCAAAAAGTTAATGAAA 57.065 25.926 0.00 0.00 36.71 2.69
6777 7861 5.649602 TGGCAAAAAGTTAATGAAAAGCG 57.350 34.783 0.00 0.00 0.00 4.68
6778 7862 4.509600 TGGCAAAAAGTTAATGAAAAGCGG 59.490 37.500 0.00 0.00 0.00 5.52
6779 7863 4.509970 GGCAAAAAGTTAATGAAAAGCGGT 59.490 37.500 0.00 0.00 0.00 5.68
6780 7864 5.692654 GGCAAAAAGTTAATGAAAAGCGGTA 59.307 36.000 0.00 0.00 0.00 4.02
6781 7865 6.201234 GGCAAAAAGTTAATGAAAAGCGGTAA 59.799 34.615 0.00 0.00 0.00 2.85
6782 7866 7.061027 GCAAAAAGTTAATGAAAAGCGGTAAC 58.939 34.615 0.00 0.00 0.00 2.50
6783 7867 7.254151 GCAAAAAGTTAATGAAAAGCGGTAACA 60.254 33.333 0.00 0.00 0.00 2.41
6784 7868 8.760569 CAAAAAGTTAATGAAAAGCGGTAACAT 58.239 29.630 0.00 0.00 0.00 2.71
6785 7869 9.968870 AAAAAGTTAATGAAAAGCGGTAACATA 57.031 25.926 0.00 0.00 0.00 2.29
6786 7870 9.968870 AAAAGTTAATGAAAAGCGGTAACATAA 57.031 25.926 0.00 0.00 0.00 1.90
6787 7871 8.959734 AAGTTAATGAAAAGCGGTAACATAAC 57.040 30.769 0.00 0.00 0.00 1.89
6788 7872 7.238571 AGTTAATGAAAAGCGGTAACATAACG 58.761 34.615 0.00 0.00 42.93 3.18
6797 7881 3.998522 CGGTAACATAACGCTTTTCAGG 58.001 45.455 0.00 0.00 29.30 3.86
6798 7882 3.680937 CGGTAACATAACGCTTTTCAGGA 59.319 43.478 0.00 0.00 29.30 3.86
6799 7883 4.435121 CGGTAACATAACGCTTTTCAGGAC 60.435 45.833 0.00 0.00 29.30 3.85
6800 7884 4.453136 GGTAACATAACGCTTTTCAGGACA 59.547 41.667 0.00 0.00 0.00 4.02
6801 7885 5.049267 GGTAACATAACGCTTTTCAGGACAA 60.049 40.000 0.00 0.00 0.00 3.18
6802 7886 5.705609 AACATAACGCTTTTCAGGACAAT 57.294 34.783 0.00 0.00 0.00 2.71
6803 7887 6.811253 AACATAACGCTTTTCAGGACAATA 57.189 33.333 0.00 0.00 0.00 1.90
6804 7888 7.391148 AACATAACGCTTTTCAGGACAATAT 57.609 32.000 0.00 0.00 0.00 1.28
6805 7889 6.785191 ACATAACGCTTTTCAGGACAATATG 58.215 36.000 0.00 0.00 0.00 1.78
6806 7890 6.597672 ACATAACGCTTTTCAGGACAATATGA 59.402 34.615 0.00 0.00 0.00 2.15
6807 7891 5.551760 AACGCTTTTCAGGACAATATGAG 57.448 39.130 0.00 0.00 0.00 2.90
6808 7892 4.579869 ACGCTTTTCAGGACAATATGAGT 58.420 39.130 0.00 0.00 0.00 3.41
6809 7893 4.631813 ACGCTTTTCAGGACAATATGAGTC 59.368 41.667 0.98 0.98 35.29 3.36
6810 7894 4.872691 CGCTTTTCAGGACAATATGAGTCT 59.127 41.667 8.08 0.00 36.29 3.24
6811 7895 6.042777 CGCTTTTCAGGACAATATGAGTCTA 58.957 40.000 8.08 0.00 36.29 2.59
6812 7896 6.703607 CGCTTTTCAGGACAATATGAGTCTAT 59.296 38.462 8.08 0.00 36.29 1.98
6813 7897 7.867909 CGCTTTTCAGGACAATATGAGTCTATA 59.132 37.037 8.08 0.00 36.29 1.31
6814 7898 9.547753 GCTTTTCAGGACAATATGAGTCTATAA 57.452 33.333 8.08 0.02 36.29 0.98
6816 7900 9.547753 TTTTCAGGACAATATGAGTCTATAAGC 57.452 33.333 8.08 0.00 36.29 3.09
6817 7901 8.484214 TTCAGGACAATATGAGTCTATAAGCT 57.516 34.615 8.08 0.00 36.29 3.74
6818 7902 9.588096 TTCAGGACAATATGAGTCTATAAGCTA 57.412 33.333 8.08 0.00 36.29 3.32
6819 7903 9.588096 TCAGGACAATATGAGTCTATAAGCTAA 57.412 33.333 8.08 0.00 36.29 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.131972 AGGCCTATATCAAGTTATGCACAT 57.868 37.500 1.29 0.00 0.00 3.21
2 3 5.567037 AGGCCTATATCAAGTTATGCACA 57.433 39.130 1.29 0.00 0.00 4.57
3 4 7.010552 CGAATAGGCCTATATCAAGTTATGCAC 59.989 40.741 25.68 0.00 0.00 4.57
4 5 7.041721 CGAATAGGCCTATATCAAGTTATGCA 58.958 38.462 25.68 0.00 0.00 3.96
5 6 6.480320 CCGAATAGGCCTATATCAAGTTATGC 59.520 42.308 25.68 0.00 0.00 3.14
34 35 8.424918 GCTCAAGGCCTATATCTAATGCTATAA 58.575 37.037 5.16 0.00 34.27 0.98
35 36 7.255625 CGCTCAAGGCCTATATCTAATGCTATA 60.256 40.741 5.16 0.00 37.74 1.31
36 37 6.462207 CGCTCAAGGCCTATATCTAATGCTAT 60.462 42.308 5.16 0.00 37.74 2.97
37 38 5.163509 CGCTCAAGGCCTATATCTAATGCTA 60.164 44.000 5.16 0.00 37.74 3.49
38 39 4.382470 CGCTCAAGGCCTATATCTAATGCT 60.382 45.833 5.16 0.00 37.74 3.79
39 40 3.868077 CGCTCAAGGCCTATATCTAATGC 59.132 47.826 5.16 0.00 37.74 3.56
40 41 5.078411 ACGCTCAAGGCCTATATCTAATG 57.922 43.478 5.16 0.00 37.74 1.90
41 42 5.482175 AGAACGCTCAAGGCCTATATCTAAT 59.518 40.000 5.16 0.00 37.74 1.73
42 43 4.833380 AGAACGCTCAAGGCCTATATCTAA 59.167 41.667 5.16 0.00 37.74 2.10
43 44 4.408276 AGAACGCTCAAGGCCTATATCTA 58.592 43.478 5.16 0.00 37.74 1.98
44 45 3.235200 AGAACGCTCAAGGCCTATATCT 58.765 45.455 5.16 0.13 37.74 1.98
45 46 3.669251 AGAACGCTCAAGGCCTATATC 57.331 47.619 5.16 0.00 37.74 1.63
46 47 4.141711 TGAAAGAACGCTCAAGGCCTATAT 60.142 41.667 5.16 0.00 37.74 0.86
47 48 3.196901 TGAAAGAACGCTCAAGGCCTATA 59.803 43.478 5.16 0.00 37.74 1.31
48 49 2.027192 TGAAAGAACGCTCAAGGCCTAT 60.027 45.455 5.16 0.00 37.74 2.57
49 50 1.346395 TGAAAGAACGCTCAAGGCCTA 59.654 47.619 5.16 0.00 37.74 3.93
50 51 0.108585 TGAAAGAACGCTCAAGGCCT 59.891 50.000 0.00 0.00 37.74 5.19
51 52 0.951558 TTGAAAGAACGCTCAAGGCC 59.048 50.000 0.00 0.00 37.74 5.19
52 53 2.322371 CTTGAAAGAACGCTCAAGGC 57.678 50.000 4.28 0.00 43.15 4.35
82 83 2.940410 TCCTCCTGTGACAAAACGAAAC 59.060 45.455 0.00 0.00 0.00 2.78
106 107 0.915364 ACCCAGATCAGAAGCTTCCC 59.085 55.000 22.81 9.84 0.00 3.97
571 572 6.312672 CAGGAATGAAACGGAAAACAGTTTTT 59.687 34.615 12.62 0.00 40.24 1.94
572 573 5.810074 CAGGAATGAAACGGAAAACAGTTTT 59.190 36.000 11.22 11.22 40.24 2.43
573 574 5.105513 ACAGGAATGAAACGGAAAACAGTTT 60.106 36.000 0.00 0.00 42.50 2.66
574 575 4.401202 ACAGGAATGAAACGGAAAACAGTT 59.599 37.500 0.00 0.00 0.00 3.16
575 576 3.951680 ACAGGAATGAAACGGAAAACAGT 59.048 39.130 0.00 0.00 0.00 3.55
576 577 4.036262 TCACAGGAATGAAACGGAAAACAG 59.964 41.667 0.00 0.00 0.00 3.16
577 578 3.948473 TCACAGGAATGAAACGGAAAACA 59.052 39.130 0.00 0.00 0.00 2.83
578 579 4.561735 TCACAGGAATGAAACGGAAAAC 57.438 40.909 0.00 0.00 0.00 2.43
579 580 4.202070 GGTTCACAGGAATGAAACGGAAAA 60.202 41.667 0.00 0.00 40.22 2.29
580 581 3.316868 GGTTCACAGGAATGAAACGGAAA 59.683 43.478 0.00 0.00 40.22 3.13
581 582 2.882137 GGTTCACAGGAATGAAACGGAA 59.118 45.455 0.00 0.00 40.22 4.30
582 583 2.500229 GGTTCACAGGAATGAAACGGA 58.500 47.619 0.00 0.00 40.22 4.69
583 584 2.989422 GGTTCACAGGAATGAAACGG 57.011 50.000 0.00 0.00 40.22 4.44
633 634 0.389757 GGCAACTTACCCCGCAAAAA 59.610 50.000 0.00 0.00 0.00 1.94
634 635 2.042800 GGCAACTTACCCCGCAAAA 58.957 52.632 0.00 0.00 0.00 2.44
635 636 3.766432 GGCAACTTACCCCGCAAA 58.234 55.556 0.00 0.00 0.00 3.68
653 654 8.410912 GGTAACTTTTCTCAAGCCTAAAGAAAA 58.589 33.333 11.49 11.49 43.23 2.29
654 655 7.558444 TGGTAACTTTTCTCAAGCCTAAAGAAA 59.442 33.333 0.00 0.00 37.27 2.52
655 656 7.057894 TGGTAACTTTTCTCAAGCCTAAAGAA 58.942 34.615 0.00 0.00 33.12 2.52
656 657 6.597562 TGGTAACTTTTCTCAAGCCTAAAGA 58.402 36.000 0.00 0.00 33.12 2.52
657 658 6.486993 ACTGGTAACTTTTCTCAAGCCTAAAG 59.513 38.462 0.00 0.00 34.58 1.85
658 659 6.362248 ACTGGTAACTTTTCTCAAGCCTAAA 58.638 36.000 0.00 0.00 37.61 1.85
659 660 5.937111 ACTGGTAACTTTTCTCAAGCCTAA 58.063 37.500 0.00 0.00 37.61 2.69
660 661 5.562298 ACTGGTAACTTTTCTCAAGCCTA 57.438 39.130 0.00 0.00 37.61 3.93
661 662 4.439253 ACTGGTAACTTTTCTCAAGCCT 57.561 40.909 0.00 0.00 37.61 4.58
662 663 4.793028 GCAACTGGTAACTTTTCTCAAGCC 60.793 45.833 0.00 0.00 37.61 4.35
663 664 4.036852 AGCAACTGGTAACTTTTCTCAAGC 59.963 41.667 0.00 0.00 37.61 4.01
664 665 5.506317 CCAGCAACTGGTAACTTTTCTCAAG 60.506 44.000 5.43 0.00 45.82 3.02
665 666 4.338118 CCAGCAACTGGTAACTTTTCTCAA 59.662 41.667 5.43 0.00 45.82 3.02
666 667 3.882888 CCAGCAACTGGTAACTTTTCTCA 59.117 43.478 5.43 0.00 45.82 3.27
667 668 4.489679 CCAGCAACTGGTAACTTTTCTC 57.510 45.455 5.43 0.00 45.82 2.87
679 680 1.601759 CTCACCACCCCAGCAACTG 60.602 63.158 0.00 0.00 0.00 3.16
680 681 2.839098 CTCACCACCCCAGCAACT 59.161 61.111 0.00 0.00 0.00 3.16
682 683 4.641645 CGCTCACCACCCCAGCAA 62.642 66.667 0.00 0.00 32.27 3.91
684 685 4.767255 CTCGCTCACCACCCCAGC 62.767 72.222 0.00 0.00 0.00 4.85
685 686 2.397413 AAACTCGCTCACCACCCCAG 62.397 60.000 0.00 0.00 0.00 4.45
686 687 1.990160 AAAACTCGCTCACCACCCCA 61.990 55.000 0.00 0.00 0.00 4.96
687 688 0.822121 AAAAACTCGCTCACCACCCC 60.822 55.000 0.00 0.00 0.00 4.95
688 689 2.715536 AAAAACTCGCTCACCACCC 58.284 52.632 0.00 0.00 0.00 4.61
731 732 7.552330 CCTGTTTCTTCAAAAATCCCTCAAAAA 59.448 33.333 0.00 0.00 0.00 1.94
732 733 7.047271 CCTGTTTCTTCAAAAATCCCTCAAAA 58.953 34.615 0.00 0.00 0.00 2.44
733 734 6.156083 ACCTGTTTCTTCAAAAATCCCTCAAA 59.844 34.615 0.00 0.00 0.00 2.69
734 735 5.660864 ACCTGTTTCTTCAAAAATCCCTCAA 59.339 36.000 0.00 0.00 0.00 3.02
735 736 5.068987 CACCTGTTTCTTCAAAAATCCCTCA 59.931 40.000 0.00 0.00 0.00 3.86
736 737 5.301805 TCACCTGTTTCTTCAAAAATCCCTC 59.698 40.000 0.00 0.00 0.00 4.30
737 738 5.208121 TCACCTGTTTCTTCAAAAATCCCT 58.792 37.500 0.00 0.00 0.00 4.20
738 739 5.529581 TCACCTGTTTCTTCAAAAATCCC 57.470 39.130 0.00 0.00 0.00 3.85
739 740 4.984785 GCTCACCTGTTTCTTCAAAAATCC 59.015 41.667 0.00 0.00 0.00 3.01
740 741 4.676924 CGCTCACCTGTTTCTTCAAAAATC 59.323 41.667 0.00 0.00 0.00 2.17
741 742 4.338118 TCGCTCACCTGTTTCTTCAAAAAT 59.662 37.500 0.00 0.00 0.00 1.82
742 743 3.692101 TCGCTCACCTGTTTCTTCAAAAA 59.308 39.130 0.00 0.00 0.00 1.94
743 744 3.275143 TCGCTCACCTGTTTCTTCAAAA 58.725 40.909 0.00 0.00 0.00 2.44
744 745 2.872245 CTCGCTCACCTGTTTCTTCAAA 59.128 45.455 0.00 0.00 0.00 2.69
745 746 2.483876 CTCGCTCACCTGTTTCTTCAA 58.516 47.619 0.00 0.00 0.00 2.69
746 747 1.873903 GCTCGCTCACCTGTTTCTTCA 60.874 52.381 0.00 0.00 0.00 3.02
747 748 0.793250 GCTCGCTCACCTGTTTCTTC 59.207 55.000 0.00 0.00 0.00 2.87
748 749 0.394565 AGCTCGCTCACCTGTTTCTT 59.605 50.000 0.00 0.00 0.00 2.52
770 771 0.898320 TAGCCACTCAACCTCTGCTC 59.102 55.000 0.00 0.00 0.00 4.26
771 772 0.901124 CTAGCCACTCAACCTCTGCT 59.099 55.000 0.00 0.00 0.00 4.24
772 773 0.742635 GCTAGCCACTCAACCTCTGC 60.743 60.000 2.29 0.00 0.00 4.26
773 774 0.459237 CGCTAGCCACTCAACCTCTG 60.459 60.000 9.66 0.00 0.00 3.35
774 775 0.612174 TCGCTAGCCACTCAACCTCT 60.612 55.000 9.66 0.00 0.00 3.69
775 776 0.179124 CTCGCTAGCCACTCAACCTC 60.179 60.000 9.66 0.00 0.00 3.85
776 777 0.612174 TCTCGCTAGCCACTCAACCT 60.612 55.000 9.66 0.00 0.00 3.50
777 778 0.246635 TTCTCGCTAGCCACTCAACC 59.753 55.000 9.66 0.00 0.00 3.77
778 779 1.336887 TGTTCTCGCTAGCCACTCAAC 60.337 52.381 9.66 6.00 0.00 3.18
779 780 0.966179 TGTTCTCGCTAGCCACTCAA 59.034 50.000 9.66 0.00 0.00 3.02
780 781 0.528017 CTGTTCTCGCTAGCCACTCA 59.472 55.000 9.66 1.89 0.00 3.41
849 850 2.545537 GGCTAGGCCCTATTGTGTAC 57.454 55.000 4.61 0.00 44.06 2.90
1213 1224 3.261137 GCTCCTATCCCCGCTATTAAAGT 59.739 47.826 0.00 0.00 0.00 2.66
1218 1229 1.258445 CCGCTCCTATCCCCGCTATT 61.258 60.000 0.00 0.00 0.00 1.73
1271 1361 0.179200 CAGTGGGCACGATAAAACGC 60.179 55.000 0.00 0.00 36.70 4.84
1291 1381 4.993705 ACCAGAATCAAGGGTTTGTAGA 57.006 40.909 0.00 0.00 35.73 2.59
1427 1521 8.934023 ACCTTGTTCAAAACTCCTATAATTGA 57.066 30.769 0.00 0.00 0.00 2.57
1503 1597 1.299544 CTGTGACGCCACGTGTACA 60.300 57.895 15.65 10.11 46.06 2.90
1571 1678 4.457496 CGCCATCTCTGGGTGCGT 62.457 66.667 0.00 0.00 43.36 5.24
1817 1924 5.575157 TGTTGGACCTTCTATAATTGCCAA 58.425 37.500 0.00 0.00 32.25 4.52
1820 1927 9.683069 CAAATATGTTGGACCTTCTATAATTGC 57.317 33.333 0.00 0.00 0.00 3.56
1853 1960 4.336889 ACTAACACTCAAGCAGCAAGTA 57.663 40.909 0.00 0.00 0.00 2.24
1854 1961 3.199880 ACTAACACTCAAGCAGCAAGT 57.800 42.857 0.00 0.00 0.00 3.16
2293 2403 7.288621 GGATAATGAAAATTCTTCTCCCCACAT 59.711 37.037 0.00 0.00 0.00 3.21
2444 2556 8.697846 TTACAACTTAAAGATGTGTATCCTCG 57.302 34.615 0.00 0.00 33.18 4.63
2572 2684 4.889995 CCCTTTTCCCCTAAGAAGCATAAG 59.110 45.833 0.00 0.00 0.00 1.73
2754 2866 2.678336 CTGGAGTCGGTATTTTTCCAGC 59.322 50.000 5.96 0.00 45.81 4.85
2942 3059 0.394899 GCTCCCCAGCTGCTATGTTT 60.395 55.000 8.66 0.00 43.09 2.83
3261 3390 4.439289 GCAATTAATGTGCTTCTCAGGTCC 60.439 45.833 12.51 0.00 39.00 4.46
4275 4622 5.173774 TGCATGTCACTCTGAAAAACTTC 57.826 39.130 0.00 0.00 0.00 3.01
4325 4672 3.933332 CGTCCCTGAAAGATCACTTAACC 59.067 47.826 0.00 0.00 35.05 2.85
4502 4849 7.902387 TGAGATTGAGAGAGAGAAACAAATG 57.098 36.000 0.00 0.00 0.00 2.32
4579 4926 6.467723 AAGTACGATGAAAAGTGTAAGCAG 57.532 37.500 0.00 0.00 0.00 4.24
4717 5064 8.893727 ACAGAAATTACCTGCTCATTATTACAC 58.106 33.333 7.46 0.00 35.14 2.90
4893 5242 4.025813 GTCAATTTGCTGCGTTGTGAAATT 60.026 37.500 10.55 6.30 0.00 1.82
5528 5881 3.087781 TGCGCTCTCTATATCAGCAGAT 58.912 45.455 9.73 0.00 38.29 2.90
5610 5963 3.838244 TCCGGGTTAGGAAATGAGATG 57.162 47.619 0.00 0.00 37.36 2.90
5666 6021 6.527423 AGAAACTCGATACACCCAAAGTAAA 58.473 36.000 0.00 0.00 0.00 2.01
5762 6125 2.673523 CCCCTCTCCACAAGCTGG 59.326 66.667 0.00 0.00 42.29 4.85
5898 6261 2.036256 AGGATTGGTGGCCACAGC 59.964 61.111 35.78 19.98 45.13 4.40
5907 6270 2.559668 CACAAACAGATGCAGGATTGGT 59.440 45.455 0.00 0.00 0.00 3.67
6050 6413 3.731728 AGCCCCATCGCCACACAT 61.732 61.111 0.00 0.00 0.00 3.21
6164 6528 2.185004 AATTCTGGACGGAGGTTGTG 57.815 50.000 0.00 0.00 0.00 3.33
6165 6529 3.326880 AGTTAATTCTGGACGGAGGTTGT 59.673 43.478 0.00 0.00 0.00 3.32
6166 6530 3.684788 CAGTTAATTCTGGACGGAGGTTG 59.315 47.826 0.00 0.00 0.00 3.77
6167 6531 3.326880 ACAGTTAATTCTGGACGGAGGTT 59.673 43.478 0.00 0.00 39.48 3.50
6168 6532 2.904434 ACAGTTAATTCTGGACGGAGGT 59.096 45.455 0.00 0.00 39.48 3.85
6169 6533 3.522553 GACAGTTAATTCTGGACGGAGG 58.477 50.000 0.00 0.00 39.48 4.30
6170 6534 3.119602 TCGACAGTTAATTCTGGACGGAG 60.120 47.826 12.30 0.00 39.48 4.63
6171 6535 2.821378 TCGACAGTTAATTCTGGACGGA 59.179 45.455 12.30 0.00 39.48 4.69
6172 6536 3.226346 TCGACAGTTAATTCTGGACGG 57.774 47.619 12.30 0.64 39.48 4.79
6173 6537 4.421058 TCATCGACAGTTAATTCTGGACG 58.579 43.478 0.00 4.96 39.48 4.79
6174 6538 6.721571 TTTCATCGACAGTTAATTCTGGAC 57.278 37.500 0.00 0.00 39.48 4.02
6175 6539 9.098355 CTTATTTCATCGACAGTTAATTCTGGA 57.902 33.333 0.00 0.00 39.48 3.86
6176 6540 8.883731 ACTTATTTCATCGACAGTTAATTCTGG 58.116 33.333 0.00 0.00 39.48 3.86
6177 6541 9.694520 CACTTATTTCATCGACAGTTAATTCTG 57.305 33.333 0.00 0.00 40.80 3.02
6178 6542 9.436957 ACACTTATTTCATCGACAGTTAATTCT 57.563 29.630 0.00 0.00 0.00 2.40
6184 6548 9.737427 CTAGATACACTTATTTCATCGACAGTT 57.263 33.333 0.00 0.00 0.00 3.16
6185 6549 9.121658 TCTAGATACACTTATTTCATCGACAGT 57.878 33.333 0.00 0.00 0.00 3.55
6187 6551 9.899226 CATCTAGATACACTTATTTCATCGACA 57.101 33.333 4.54 0.00 0.00 4.35
6188 6552 8.855279 GCATCTAGATACACTTATTTCATCGAC 58.145 37.037 4.54 0.00 0.00 4.20
6189 6553 7.750903 CGCATCTAGATACACTTATTTCATCGA 59.249 37.037 4.54 0.00 0.00 3.59
6190 6554 7.539022 ACGCATCTAGATACACTTATTTCATCG 59.461 37.037 4.54 0.00 0.00 3.84
6191 6555 8.749841 ACGCATCTAGATACACTTATTTCATC 57.250 34.615 4.54 0.00 0.00 2.92
6192 6556 9.547753 AAACGCATCTAGATACACTTATTTCAT 57.452 29.630 4.54 0.00 0.00 2.57
6193 6557 8.942338 AAACGCATCTAGATACACTTATTTCA 57.058 30.769 4.54 0.00 0.00 2.69
6197 6561 9.464714 CACTAAAACGCATCTAGATACACTTAT 57.535 33.333 4.54 0.00 0.00 1.73
6198 6562 8.464404 ACACTAAAACGCATCTAGATACACTTA 58.536 33.333 4.54 0.10 0.00 2.24
6199 6563 7.275779 CACACTAAAACGCATCTAGATACACTT 59.724 37.037 4.54 0.00 0.00 3.16
6200 6564 6.752351 CACACTAAAACGCATCTAGATACACT 59.248 38.462 4.54 0.00 0.00 3.55
6201 6565 6.019801 CCACACTAAAACGCATCTAGATACAC 60.020 42.308 4.54 0.00 0.00 2.90
6202 6566 6.040247 CCACACTAAAACGCATCTAGATACA 58.960 40.000 4.54 0.00 0.00 2.29
6203 6567 6.270815 TCCACACTAAAACGCATCTAGATAC 58.729 40.000 4.54 0.00 0.00 2.24
6204 6568 6.459670 TCCACACTAAAACGCATCTAGATA 57.540 37.500 4.54 0.00 0.00 1.98
6205 6569 5.339008 TCCACACTAAAACGCATCTAGAT 57.661 39.130 0.00 0.00 0.00 1.98
6206 6570 4.794278 TCCACACTAAAACGCATCTAGA 57.206 40.909 0.00 0.00 0.00 2.43
6207 6571 6.040247 TGTATCCACACTAAAACGCATCTAG 58.960 40.000 0.00 0.00 0.00 2.43
6208 6572 5.968254 TGTATCCACACTAAAACGCATCTA 58.032 37.500 0.00 0.00 0.00 1.98
6209 6573 4.827692 TGTATCCACACTAAAACGCATCT 58.172 39.130 0.00 0.00 0.00 2.90
6222 6586 3.056179 TCGCTGAAATGAGTGTATCCACA 60.056 43.478 0.00 0.00 44.39 4.17
6223 6587 3.307242 GTCGCTGAAATGAGTGTATCCAC 59.693 47.826 0.00 0.00 42.17 4.02
6224 6588 3.056179 TGTCGCTGAAATGAGTGTATCCA 60.056 43.478 0.00 0.00 0.00 3.41
6225 6589 3.521560 TGTCGCTGAAATGAGTGTATCC 58.478 45.455 0.00 0.00 0.00 2.59
6226 6590 4.177026 ACTGTCGCTGAAATGAGTGTATC 58.823 43.478 0.00 0.00 0.00 2.24
6227 6591 4.193826 ACTGTCGCTGAAATGAGTGTAT 57.806 40.909 0.00 0.00 0.00 2.29
6228 6592 3.660501 ACTGTCGCTGAAATGAGTGTA 57.339 42.857 0.00 0.00 0.00 2.90
6229 6593 2.533266 ACTGTCGCTGAAATGAGTGT 57.467 45.000 0.00 0.00 0.00 3.55
6230 6594 2.342651 CGTACTGTCGCTGAAATGAGTG 59.657 50.000 0.00 0.00 0.00 3.51
6231 6595 2.596452 CGTACTGTCGCTGAAATGAGT 58.404 47.619 0.00 0.00 0.00 3.41
6232 6596 1.920574 CCGTACTGTCGCTGAAATGAG 59.079 52.381 0.00 0.00 0.00 2.90
6233 6597 1.542472 TCCGTACTGTCGCTGAAATGA 59.458 47.619 0.00 0.00 0.00 2.57
6234 6598 1.920574 CTCCGTACTGTCGCTGAAATG 59.079 52.381 0.00 0.00 0.00 2.32
6235 6599 1.135083 CCTCCGTACTGTCGCTGAAAT 60.135 52.381 0.00 0.00 0.00 2.17
6236 6600 0.242825 CCTCCGTACTGTCGCTGAAA 59.757 55.000 0.00 0.00 0.00 2.69
6237 6601 1.592400 CCCTCCGTACTGTCGCTGAA 61.592 60.000 0.00 0.00 0.00 3.02
6238 6602 2.044555 CCCTCCGTACTGTCGCTGA 61.045 63.158 0.00 0.00 0.00 4.26
6239 6603 1.994507 CTCCCTCCGTACTGTCGCTG 61.995 65.000 0.00 0.00 0.00 5.18
6240 6604 1.749638 CTCCCTCCGTACTGTCGCT 60.750 63.158 0.00 0.00 0.00 4.93
6241 6605 0.745845 TACTCCCTCCGTACTGTCGC 60.746 60.000 0.00 0.00 0.00 5.19
6242 6606 1.297664 CTACTCCCTCCGTACTGTCG 58.702 60.000 0.00 0.00 0.00 4.35
6243 6607 2.416680 ACTACTCCCTCCGTACTGTC 57.583 55.000 0.00 0.00 0.00 3.51
6244 6608 3.110705 TCTACTACTCCCTCCGTACTGT 58.889 50.000 0.00 0.00 0.00 3.55
6245 6609 3.387374 TCTCTACTACTCCCTCCGTACTG 59.613 52.174 0.00 0.00 0.00 2.74
6246 6610 3.652055 TCTCTACTACTCCCTCCGTACT 58.348 50.000 0.00 0.00 0.00 2.73
6247 6611 4.414337 TTCTCTACTACTCCCTCCGTAC 57.586 50.000 0.00 0.00 0.00 3.67
6248 6612 5.374921 CATTTCTCTACTACTCCCTCCGTA 58.625 45.833 0.00 0.00 0.00 4.02
6249 6613 4.208746 CATTTCTCTACTACTCCCTCCGT 58.791 47.826 0.00 0.00 0.00 4.69
6250 6614 3.004944 GCATTTCTCTACTACTCCCTCCG 59.995 52.174 0.00 0.00 0.00 4.63
6251 6615 4.038642 CAGCATTTCTCTACTACTCCCTCC 59.961 50.000 0.00 0.00 0.00 4.30
6252 6616 4.647399 ACAGCATTTCTCTACTACTCCCTC 59.353 45.833 0.00 0.00 0.00 4.30
6253 6617 4.615513 ACAGCATTTCTCTACTACTCCCT 58.384 43.478 0.00 0.00 0.00 4.20
6254 6618 6.466885 TTACAGCATTTCTCTACTACTCCC 57.533 41.667 0.00 0.00 0.00 4.30
6255 6619 8.657729 GTTTTTACAGCATTTCTCTACTACTCC 58.342 37.037 0.00 0.00 0.00 3.85
6256 6620 8.373992 CGTTTTTACAGCATTTCTCTACTACTC 58.626 37.037 0.00 0.00 0.00 2.59
6257 6621 7.148623 GCGTTTTTACAGCATTTCTCTACTACT 60.149 37.037 0.00 0.00 0.00 2.57
6258 6622 6.954297 GCGTTTTTACAGCATTTCTCTACTAC 59.046 38.462 0.00 0.00 0.00 2.73
6261 6625 5.928153 AGCGTTTTTACAGCATTTCTCTAC 58.072 37.500 0.00 0.00 0.00 2.59
6276 6640 0.173708 TGTTTCCGGCAAGCGTTTTT 59.826 45.000 0.00 0.00 0.00 1.94
6288 6652 1.732259 AGCTAGTCGCAAATGTTTCCG 59.268 47.619 0.00 0.00 42.61 4.30
6290 6654 3.361940 GCAAAGCTAGTCGCAAATGTTTC 59.638 43.478 0.00 0.00 42.61 2.78
6295 6659 3.941483 ACTATGCAAAGCTAGTCGCAAAT 59.059 39.130 0.00 0.00 42.61 2.32
6296 6660 3.334691 ACTATGCAAAGCTAGTCGCAAA 58.665 40.909 0.00 0.00 42.61 3.68
6390 7350 1.335810 GATGTACCGCGTATGGAGTGA 59.664 52.381 4.92 0.00 0.00 3.41
6391 7351 1.767289 GATGTACCGCGTATGGAGTG 58.233 55.000 4.92 0.00 0.00 3.51
6392 7352 0.309922 CGATGTACCGCGTATGGAGT 59.690 55.000 4.92 0.00 0.00 3.85
6393 7353 0.386858 CCGATGTACCGCGTATGGAG 60.387 60.000 4.92 0.00 0.00 3.86
6398 7358 0.592637 CATACCCGATGTACCGCGTA 59.407 55.000 4.92 0.00 30.62 4.42
6415 7381 2.191375 CCGAGCAGTCATGGCCAT 59.809 61.111 14.09 14.09 0.00 4.40
6416 7382 4.783621 GCCGAGCAGTCATGGCCA 62.784 66.667 8.56 8.56 41.70 5.36
6419 7385 2.887568 GTCGCCGAGCAGTCATGG 60.888 66.667 0.00 0.00 0.00 3.66
6466 7432 0.037232 ACTACCAGGCAAGTTCTCGC 60.037 55.000 0.00 0.00 0.00 5.03
6544 7628 0.454957 TGCTCGTAGTAAACCGCGTC 60.455 55.000 4.92 0.00 0.00 5.19
6548 7632 1.343506 GTGGTGCTCGTAGTAAACCG 58.656 55.000 0.00 0.00 33.41 4.44
6549 7633 1.343506 CGTGGTGCTCGTAGTAAACC 58.656 55.000 0.00 0.00 0.00 3.27
6556 7640 3.220999 AAGCTGCGTGGTGCTCGTA 62.221 57.895 0.00 0.00 46.63 3.43
6622 7706 3.726517 CAAGTCAACAGGCGGGCG 61.727 66.667 0.00 0.00 0.00 6.13
6623 7707 1.734388 AAACAAGTCAACAGGCGGGC 61.734 55.000 0.00 0.00 0.00 6.13
6624 7708 0.744281 AAAACAAGTCAACAGGCGGG 59.256 50.000 0.00 0.00 0.00 6.13
6625 7709 1.596954 CGAAAACAAGTCAACAGGCGG 60.597 52.381 0.00 0.00 0.00 6.13
6626 7710 1.741993 CGAAAACAAGTCAACAGGCG 58.258 50.000 0.00 0.00 0.00 5.52
6627 7711 1.065551 AGCGAAAACAAGTCAACAGGC 59.934 47.619 0.00 0.00 0.00 4.85
6628 7712 2.719798 CAGCGAAAACAAGTCAACAGG 58.280 47.619 0.00 0.00 0.00 4.00
6629 7713 2.111756 GCAGCGAAAACAAGTCAACAG 58.888 47.619 0.00 0.00 0.00 3.16
6630 7714 1.530852 CGCAGCGAAAACAAGTCAACA 60.531 47.619 9.98 0.00 0.00 3.33
6631 7715 1.112459 CGCAGCGAAAACAAGTCAAC 58.888 50.000 9.98 0.00 0.00 3.18
6632 7716 3.525059 CGCAGCGAAAACAAGTCAA 57.475 47.368 9.98 0.00 0.00 3.18
6665 7749 4.143333 TGGACGAAGCTAGGGCGC 62.143 66.667 0.00 0.00 44.37 6.53
6666 7750 2.202756 GTGGACGAAGCTAGGGCG 60.203 66.667 0.00 0.00 44.37 6.13
6667 7751 2.187163 GGTGGACGAAGCTAGGGC 59.813 66.667 0.00 0.00 39.06 5.19
6668 7752 0.970937 TGAGGTGGACGAAGCTAGGG 60.971 60.000 0.00 0.00 0.00 3.53
6669 7753 1.115467 ATGAGGTGGACGAAGCTAGG 58.885 55.000 0.00 0.00 0.00 3.02
6670 7754 3.243569 CCTTATGAGGTGGACGAAGCTAG 60.244 52.174 0.00 0.00 38.32 3.42
6671 7755 2.693591 CCTTATGAGGTGGACGAAGCTA 59.306 50.000 0.00 0.00 38.32 3.32
6672 7756 1.482593 CCTTATGAGGTGGACGAAGCT 59.517 52.381 0.00 0.00 38.32 3.74
6673 7757 1.941325 CCTTATGAGGTGGACGAAGC 58.059 55.000 0.00 0.00 38.32 3.86
6674 7758 1.482593 AGCCTTATGAGGTGGACGAAG 59.517 52.381 5.29 0.00 45.44 3.79
6675 7759 1.568504 AGCCTTATGAGGTGGACGAA 58.431 50.000 5.29 0.00 45.44 3.85
6676 7760 2.307768 CTAGCCTTATGAGGTGGACGA 58.692 52.381 5.29 0.00 45.44 4.20
6677 7761 2.032620 ACTAGCCTTATGAGGTGGACG 58.967 52.381 5.29 0.00 45.44 4.79
6678 7762 3.031736 TGACTAGCCTTATGAGGTGGAC 58.968 50.000 5.29 0.00 45.44 4.02
6679 7763 3.398318 TGACTAGCCTTATGAGGTGGA 57.602 47.619 5.29 0.00 45.44 4.02
6680 7764 4.835615 ACTATGACTAGCCTTATGAGGTGG 59.164 45.833 5.29 0.00 45.44 4.61
6681 7765 5.279206 CCACTATGACTAGCCTTATGAGGTG 60.279 48.000 5.29 0.00 45.44 4.00
6682 7766 4.835615 CCACTATGACTAGCCTTATGAGGT 59.164 45.833 5.29 0.00 45.44 3.85
6683 7767 5.080337 TCCACTATGACTAGCCTTATGAGG 58.920 45.833 0.00 0.00 46.50 3.86
6684 7768 6.266558 AGTTCCACTATGACTAGCCTTATGAG 59.733 42.308 0.00 0.00 0.00 2.90
6685 7769 6.136857 AGTTCCACTATGACTAGCCTTATGA 58.863 40.000 0.00 0.00 0.00 2.15
6686 7770 6.412362 AGTTCCACTATGACTAGCCTTATG 57.588 41.667 0.00 0.00 0.00 1.90
6687 7771 7.785506 AGTTAGTTCCACTATGACTAGCCTTAT 59.214 37.037 0.00 0.00 29.64 1.73
6688 7772 7.124052 AGTTAGTTCCACTATGACTAGCCTTA 58.876 38.462 0.00 0.00 29.64 2.69
6689 7773 5.958987 AGTTAGTTCCACTATGACTAGCCTT 59.041 40.000 0.00 0.00 29.64 4.35
6690 7774 5.520751 AGTTAGTTCCACTATGACTAGCCT 58.479 41.667 0.00 0.00 29.64 4.58
6691 7775 5.855740 AGTTAGTTCCACTATGACTAGCC 57.144 43.478 0.00 0.00 29.64 3.93
6692 7776 6.919115 GCTAAGTTAGTTCCACTATGACTAGC 59.081 42.308 11.51 0.00 29.64 3.42
6693 7777 8.228035 AGCTAAGTTAGTTCCACTATGACTAG 57.772 38.462 11.51 0.00 29.64 2.57
6694 7778 9.339850 CTAGCTAAGTTAGTTCCACTATGACTA 57.660 37.037 11.51 0.00 29.64 2.59
6695 7779 7.835181 ACTAGCTAAGTTAGTTCCACTATGACT 59.165 37.037 11.51 0.00 33.35 3.41
6696 7780 7.998580 ACTAGCTAAGTTAGTTCCACTATGAC 58.001 38.462 11.51 0.00 33.35 3.06
6697 7781 9.690913 TTACTAGCTAAGTTAGTTCCACTATGA 57.309 33.333 11.51 0.00 39.80 2.15
6698 7782 9.733219 GTTACTAGCTAAGTTAGTTCCACTATG 57.267 37.037 11.51 2.28 39.80 2.23
6699 7783 9.471702 TGTTACTAGCTAAGTTAGTTCCACTAT 57.528 33.333 11.51 0.00 39.80 2.12
6700 7784 8.868522 TGTTACTAGCTAAGTTAGTTCCACTA 57.131 34.615 11.51 3.51 39.80 2.74
6701 7785 7.771927 TGTTACTAGCTAAGTTAGTTCCACT 57.228 36.000 11.51 2.54 39.80 4.00
6702 7786 9.733219 CTATGTTACTAGCTAAGTTAGTTCCAC 57.267 37.037 11.51 2.26 39.80 4.02
6703 7787 8.411683 GCTATGTTACTAGCTAAGTTAGTTCCA 58.588 37.037 11.51 0.11 40.79 3.53
6704 7788 7.590689 CGCTATGTTACTAGCTAAGTTAGTTCC 59.409 40.741 11.51 0.00 41.61 3.62
6705 7789 7.113264 GCGCTATGTTACTAGCTAAGTTAGTTC 59.887 40.741 11.51 0.00 41.61 3.01
6706 7790 6.916932 GCGCTATGTTACTAGCTAAGTTAGTT 59.083 38.462 11.51 8.06 41.61 2.24
6707 7791 6.039047 TGCGCTATGTTACTAGCTAAGTTAGT 59.961 38.462 9.73 0.00 41.61 2.24
6708 7792 6.360148 GTGCGCTATGTTACTAGCTAAGTTAG 59.640 42.308 9.73 5.47 41.61 2.34
6709 7793 6.039047 AGTGCGCTATGTTACTAGCTAAGTTA 59.961 38.462 9.73 0.00 41.61 2.24
6710 7794 5.041940 GTGCGCTATGTTACTAGCTAAGTT 58.958 41.667 9.73 0.00 41.61 2.66
6711 7795 4.338682 AGTGCGCTATGTTACTAGCTAAGT 59.661 41.667 9.73 0.00 41.61 2.24
6712 7796 4.861210 AGTGCGCTATGTTACTAGCTAAG 58.139 43.478 9.73 0.00 41.61 2.18
6713 7797 4.913335 AGTGCGCTATGTTACTAGCTAA 57.087 40.909 9.73 0.00 41.61 3.09
6714 7798 4.913335 AAGTGCGCTATGTTACTAGCTA 57.087 40.909 9.73 0.00 41.61 3.32
6715 7799 3.802948 AAGTGCGCTATGTTACTAGCT 57.197 42.857 9.73 0.00 41.61 3.32
6716 7800 5.961395 TTAAAGTGCGCTATGTTACTAGC 57.039 39.130 9.73 4.52 40.61 3.42
6717 7801 9.769093 AAAAATTAAAGTGCGCTATGTTACTAG 57.231 29.630 9.73 0.00 0.00 2.57
6747 7831 9.935241 TTTCATTAACTTTTTGCCATATAAGCA 57.065 25.926 0.00 0.00 38.81 3.91
6751 7835 9.081997 CGCTTTTCATTAACTTTTTGCCATATA 57.918 29.630 0.00 0.00 0.00 0.86
6752 7836 7.064490 CCGCTTTTCATTAACTTTTTGCCATAT 59.936 33.333 0.00 0.00 0.00 1.78
6753 7837 6.367422 CCGCTTTTCATTAACTTTTTGCCATA 59.633 34.615 0.00 0.00 0.00 2.74
6754 7838 5.179182 CCGCTTTTCATTAACTTTTTGCCAT 59.821 36.000 0.00 0.00 0.00 4.40
6755 7839 4.509600 CCGCTTTTCATTAACTTTTTGCCA 59.490 37.500 0.00 0.00 0.00 4.92
6756 7840 4.509970 ACCGCTTTTCATTAACTTTTTGCC 59.490 37.500 0.00 0.00 0.00 4.52
6757 7841 5.651172 ACCGCTTTTCATTAACTTTTTGC 57.349 34.783 0.00 0.00 0.00 3.68
6758 7842 8.121167 TGTTACCGCTTTTCATTAACTTTTTG 57.879 30.769 0.00 0.00 0.00 2.44
6759 7843 8.880878 ATGTTACCGCTTTTCATTAACTTTTT 57.119 26.923 0.00 0.00 0.00 1.94
6760 7844 9.968870 TTATGTTACCGCTTTTCATTAACTTTT 57.031 25.926 0.00 0.00 0.00 2.27
6761 7845 9.401873 GTTATGTTACCGCTTTTCATTAACTTT 57.598 29.630 0.00 0.00 0.00 2.66
6762 7846 7.747357 CGTTATGTTACCGCTTTTCATTAACTT 59.253 33.333 0.00 0.00 0.00 2.66
6763 7847 7.238571 CGTTATGTTACCGCTTTTCATTAACT 58.761 34.615 0.00 0.00 0.00 2.24
6764 7848 6.022017 GCGTTATGTTACCGCTTTTCATTAAC 60.022 38.462 0.00 0.00 43.81 2.01
6765 7849 6.022821 GCGTTATGTTACCGCTTTTCATTAA 58.977 36.000 0.00 0.00 43.81 1.40
6766 7850 5.561993 GCGTTATGTTACCGCTTTTCATTA 58.438 37.500 0.00 0.00 43.81 1.90
6767 7851 4.408694 GCGTTATGTTACCGCTTTTCATT 58.591 39.130 0.00 0.00 43.81 2.57
6768 7852 4.011058 GCGTTATGTTACCGCTTTTCAT 57.989 40.909 0.00 0.00 43.81 2.57
6769 7853 3.458779 GCGTTATGTTACCGCTTTTCA 57.541 42.857 0.00 0.00 43.81 2.69
6776 7860 3.680937 TCCTGAAAAGCGTTATGTTACCG 59.319 43.478 0.00 0.00 0.00 4.02
6777 7861 4.453136 TGTCCTGAAAAGCGTTATGTTACC 59.547 41.667 0.00 0.00 0.00 2.85
6778 7862 5.600908 TGTCCTGAAAAGCGTTATGTTAC 57.399 39.130 0.00 0.00 0.00 2.50
6779 7863 6.811253 ATTGTCCTGAAAAGCGTTATGTTA 57.189 33.333 0.00 0.00 0.00 2.41
6780 7864 5.705609 ATTGTCCTGAAAAGCGTTATGTT 57.294 34.783 0.00 0.00 0.00 2.71
6781 7865 6.597672 TCATATTGTCCTGAAAAGCGTTATGT 59.402 34.615 0.00 0.00 0.00 2.29
6782 7866 7.015226 TCATATTGTCCTGAAAAGCGTTATG 57.985 36.000 0.00 0.00 0.00 1.90
6783 7867 6.823689 ACTCATATTGTCCTGAAAAGCGTTAT 59.176 34.615 0.00 0.00 0.00 1.89
6784 7868 6.170506 ACTCATATTGTCCTGAAAAGCGTTA 58.829 36.000 0.00 0.00 0.00 3.18
6785 7869 5.003804 ACTCATATTGTCCTGAAAAGCGTT 58.996 37.500 0.00 0.00 0.00 4.84
6786 7870 4.579869 ACTCATATTGTCCTGAAAAGCGT 58.420 39.130 0.00 0.00 0.00 5.07
6787 7871 4.872691 AGACTCATATTGTCCTGAAAAGCG 59.127 41.667 2.89 0.00 35.21 4.68
6788 7872 9.547753 TTATAGACTCATATTGTCCTGAAAAGC 57.452 33.333 2.89 0.00 35.21 3.51
6790 7874 9.547753 GCTTATAGACTCATATTGTCCTGAAAA 57.452 33.333 2.89 0.00 35.21 2.29
6791 7875 8.928448 AGCTTATAGACTCATATTGTCCTGAAA 58.072 33.333 2.89 0.00 35.21 2.69
6792 7876 8.484214 AGCTTATAGACTCATATTGTCCTGAA 57.516 34.615 2.89 0.00 35.21 3.02
6793 7877 9.588096 TTAGCTTATAGACTCATATTGTCCTGA 57.412 33.333 0.00 0.00 35.21 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.