Multiple sequence alignment - TraesCS3A01G308400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G308400 chr3A 100.000 3659 0 0 1 3659 546620690 546617032 0.000000e+00 6758.0
1 TraesCS3A01G308400 chr3A 96.970 33 1 0 1778 1810 724078044 724078012 5.100000e-04 56.5
2 TraesCS3A01G308400 chr3B 94.388 2281 92 9 1391 3659 142872066 142869810 0.000000e+00 3470.0
3 TraesCS3A01G308400 chr3B 85.988 521 48 16 227 732 24614021 24614531 5.380000e-148 534.0
4 TraesCS3A01G308400 chr3B 87.143 140 16 2 120 259 24689912 24690049 1.360000e-34 158.0
5 TraesCS3A01G308400 chr3B 97.222 36 1 0 8 43 142879773 142879738 1.100000e-05 62.1
6 TraesCS3A01G308400 chr3B 91.111 45 4 0 1772 1816 794875982 794875938 1.100000e-05 62.1
7 TraesCS3A01G308400 chr3D 92.948 2283 107 22 1391 3659 93255036 93257278 0.000000e+00 3275.0
8 TraesCS3A01G308400 chr3D 72.432 769 156 42 409 1151 363251776 363251038 1.040000e-45 195.0
9 TraesCS3A01G308400 chr5A 89.118 1066 82 26 123 1167 146920960 146922012 0.000000e+00 1295.0
10 TraesCS3A01G308400 chr5A 88.681 963 79 24 227 1170 146922318 146923269 0.000000e+00 1147.0
11 TraesCS3A01G308400 chr5A 88.435 147 16 1 125 271 146922175 146922320 3.760000e-40 176.0
12 TraesCS3A01G308400 chr4A 84.186 1075 113 30 123 1161 624428040 624426987 0.000000e+00 990.0
13 TraesCS3A01G308400 chr6D 84.522 827 63 30 227 1032 163827364 163828146 0.000000e+00 758.0
14 TraesCS3A01G308400 chr6D 90.728 151 14 0 1022 1172 163829947 163830097 6.200000e-48 202.0
15 TraesCS3A01G308400 chr6D 91.971 137 10 1 123 259 163827219 163827354 1.340000e-44 191.0
16 TraesCS3A01G308400 chr2D 89.324 562 30 18 227 773 299556922 299556376 0.000000e+00 678.0
17 TraesCS3A01G308400 chr2D 84.810 553 38 19 227 773 390900015 390900527 7.010000e-142 514.0
18 TraesCS3A01G308400 chr2B 87.354 601 43 23 227 808 30502394 30501808 0.000000e+00 658.0
19 TraesCS3A01G308400 chr2B 84.112 642 58 24 124 732 202600301 202599671 6.810000e-162 580.0
20 TraesCS3A01G308400 chr2B 84.348 575 65 21 227 784 761892985 761893551 1.160000e-149 540.0
21 TraesCS3A01G308400 chr2B 92.248 129 9 1 123 251 761892841 761892968 8.070000e-42 182.0
22 TraesCS3A01G308400 chr7B 84.406 699 75 21 124 812 590528683 590529357 0.000000e+00 656.0
23 TraesCS3A01G308400 chr7B 87.000 600 48 24 227 808 567887357 567887944 0.000000e+00 649.0
24 TraesCS3A01G308400 chr7B 83.206 131 16 4 604 732 74343368 74343242 8.300000e-22 115.0
25 TraesCS3A01G308400 chr7B 82.667 75 10 3 742 815 603598601 603598529 3.050000e-06 63.9
26 TraesCS3A01G308400 chr7B 100.000 28 0 0 1146 1173 678887287 678887314 7.000000e-03 52.8
27 TraesCS3A01G308400 chr6B 87.207 555 47 20 227 765 370126528 370127074 8.690000e-171 610.0
28 TraesCS3A01G308400 chr6B 87.619 105 9 4 630 732 539187904 539187802 6.420000e-23 119.0
29 TraesCS3A01G308400 chr5B 82.234 546 57 21 226 765 67955711 67956222 5.610000e-118 435.0
30 TraesCS3A01G308400 chr5B 91.489 47 4 0 127 173 596900030 596899984 8.480000e-07 65.8
31 TraesCS3A01G308400 chr1D 72.862 608 103 37 600 1173 16354922 16355501 6.330000e-33 152.0
32 TraesCS3A01G308400 chr1D 93.023 43 3 0 131 173 283622833 283622875 3.050000e-06 63.9
33 TraesCS3A01G308400 chr6A 78.059 237 47 4 939 1173 600528283 600528050 1.060000e-30 145.0
34 TraesCS3A01G308400 chrUn 83.206 131 16 4 604 732 266857958 266857832 8.300000e-22 115.0
35 TraesCS3A01G308400 chrUn 88.679 53 5 1 1345 1396 279821823 279821771 3.050000e-06 63.9
36 TraesCS3A01G308400 chrUn 88.679 53 5 1 1345 1396 363755182 363755130 3.050000e-06 63.9
37 TraesCS3A01G308400 chr7A 82.906 117 12 6 838 950 663426768 663426880 8.360000e-17 99.0
38 TraesCS3A01G308400 chr7A 95.455 44 2 0 124 167 722605456 722605499 1.820000e-08 71.3
39 TraesCS3A01G308400 chr7D 90.196 51 4 1 1345 1394 79636710 79636760 8.480000e-07 65.8
40 TraesCS3A01G308400 chr7D 90.000 50 4 1 1345 1393 16012462 16012511 3.050000e-06 63.9
41 TraesCS3A01G308400 chr5D 100.000 28 0 0 812 839 357373748 357373721 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G308400 chr3A 546617032 546620690 3658 True 6758.000000 6758 100.000000 1 3659 1 chr3A.!!$R1 3658
1 TraesCS3A01G308400 chr3B 142869810 142872066 2256 True 3470.000000 3470 94.388000 1391 3659 1 chr3B.!!$R1 2268
2 TraesCS3A01G308400 chr3B 24614021 24614531 510 False 534.000000 534 85.988000 227 732 1 chr3B.!!$F1 505
3 TraesCS3A01G308400 chr3D 93255036 93257278 2242 False 3275.000000 3275 92.948000 1391 3659 1 chr3D.!!$F1 2268
4 TraesCS3A01G308400 chr5A 146920960 146923269 2309 False 872.666667 1295 88.744667 123 1170 3 chr5A.!!$F1 1047
5 TraesCS3A01G308400 chr4A 624426987 624428040 1053 True 990.000000 990 84.186000 123 1161 1 chr4A.!!$R1 1038
6 TraesCS3A01G308400 chr6D 163827219 163830097 2878 False 383.666667 758 89.073667 123 1172 3 chr6D.!!$F1 1049
7 TraesCS3A01G308400 chr2D 299556376 299556922 546 True 678.000000 678 89.324000 227 773 1 chr2D.!!$R1 546
8 TraesCS3A01G308400 chr2D 390900015 390900527 512 False 514.000000 514 84.810000 227 773 1 chr2D.!!$F1 546
9 TraesCS3A01G308400 chr2B 30501808 30502394 586 True 658.000000 658 87.354000 227 808 1 chr2B.!!$R1 581
10 TraesCS3A01G308400 chr2B 202599671 202600301 630 True 580.000000 580 84.112000 124 732 1 chr2B.!!$R2 608
11 TraesCS3A01G308400 chr2B 761892841 761893551 710 False 361.000000 540 88.298000 123 784 2 chr2B.!!$F1 661
12 TraesCS3A01G308400 chr7B 590528683 590529357 674 False 656.000000 656 84.406000 124 812 1 chr7B.!!$F2 688
13 TraesCS3A01G308400 chr7B 567887357 567887944 587 False 649.000000 649 87.000000 227 808 1 chr7B.!!$F1 581
14 TraesCS3A01G308400 chr6B 370126528 370127074 546 False 610.000000 610 87.207000 227 765 1 chr6B.!!$F1 538
15 TraesCS3A01G308400 chr5B 67955711 67956222 511 False 435.000000 435 82.234000 226 765 1 chr5B.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.037590 TCCGGGAAACTTCATGGTGG 59.962 55.0 0.0 0.0 0.00 4.61 F
1178 4187 0.031111 CACATAGGACCTCCAGGGGA 60.031 60.0 0.0 0.0 40.27 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 4938 0.029700 TGAAGAAGAACGCGTCGTCA 59.970 50.000 14.44 11.36 39.99 4.35 R
2920 5944 1.270625 CCGTTGAGGCCTTGACAAGTA 60.271 52.381 6.77 0.00 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.789977 TCCGGATGTGGTGTTGTG 57.210 55.556 0.00 0.00 0.00 3.33
20 21 1.896183 CGGATGTGGTGTTGTGGCA 60.896 57.895 0.00 0.00 0.00 4.92
27 28 3.432186 GTGTTGTGGCACCTCACC 58.568 61.111 22.72 11.09 36.87 4.02
28 29 1.453015 GTGTTGTGGCACCTCACCA 60.453 57.895 22.72 8.68 36.87 4.17
33 34 3.625897 TGGCACCTCACCACTCCG 61.626 66.667 0.00 0.00 30.29 4.63
34 35 4.394712 GGCACCTCACCACTCCGG 62.395 72.222 0.00 0.00 42.50 5.14
36 37 2.603473 CACCTCACCACTCCGGGA 60.603 66.667 0.00 0.00 40.22 5.14
37 38 2.203182 ACCTCACCACTCCGGGAA 59.797 61.111 0.00 0.00 40.22 3.97
38 39 1.460689 ACCTCACCACTCCGGGAAA 60.461 57.895 0.00 0.00 40.22 3.13
39 40 1.003718 CCTCACCACTCCGGGAAAC 60.004 63.158 0.00 0.00 40.22 2.78
40 41 1.481056 CCTCACCACTCCGGGAAACT 61.481 60.000 0.00 0.00 40.22 2.66
44 45 1.064825 ACCACTCCGGGAAACTTCAT 58.935 50.000 0.00 0.00 40.22 2.57
45 46 1.271379 ACCACTCCGGGAAACTTCATG 60.271 52.381 0.00 0.00 40.22 3.07
48 49 1.271379 ACTCCGGGAAACTTCATGGTG 60.271 52.381 0.00 0.00 0.00 4.17
49 50 0.037590 TCCGGGAAACTTCATGGTGG 59.962 55.000 0.00 0.00 0.00 4.61
50 51 1.595093 CCGGGAAACTTCATGGTGGC 61.595 60.000 0.00 0.00 0.00 5.01
51 52 1.883021 GGGAAACTTCATGGTGGCG 59.117 57.895 0.00 0.00 0.00 5.69
53 54 0.608035 GGAAACTTCATGGTGGCGGA 60.608 55.000 0.00 0.00 0.00 5.54
55 56 1.401905 GAAACTTCATGGTGGCGGATC 59.598 52.381 0.00 0.00 0.00 3.36
56 57 0.620556 AACTTCATGGTGGCGGATCT 59.379 50.000 0.00 0.00 0.00 2.75
58 59 0.467384 CTTCATGGTGGCGGATCTCT 59.533 55.000 0.00 0.00 0.00 3.10
59 60 0.465705 TTCATGGTGGCGGATCTCTC 59.534 55.000 0.00 0.00 0.00 3.20
60 61 1.300465 CATGGTGGCGGATCTCTCG 60.300 63.158 0.00 0.00 0.00 4.04
66 67 3.285215 GCGGATCTCTCGGCGGTA 61.285 66.667 7.21 0.00 37.87 4.02
69 70 2.252855 GATCTCTCGGCGGTAGCG 59.747 66.667 10.57 10.57 46.35 4.26
70 71 3.256716 GATCTCTCGGCGGTAGCGG 62.257 68.421 17.08 0.00 46.35 5.52
79 80 4.554363 CGGTAGCGGAGTGGAGCG 62.554 72.222 6.39 0.00 38.61 5.03
81 82 3.450115 GTAGCGGAGTGGAGCGGT 61.450 66.667 0.00 0.00 38.61 5.68
82 83 3.449227 TAGCGGAGTGGAGCGGTG 61.449 66.667 0.00 0.00 38.61 4.94
85 86 3.461773 CGGAGTGGAGCGGTGGAT 61.462 66.667 0.00 0.00 0.00 3.41
88 89 1.026718 GGAGTGGAGCGGTGGATTTG 61.027 60.000 0.00 0.00 0.00 2.32
89 90 1.002134 AGTGGAGCGGTGGATTTGG 60.002 57.895 0.00 0.00 0.00 3.28
90 91 2.046285 GTGGAGCGGTGGATTTGGG 61.046 63.158 0.00 0.00 0.00 4.12
91 92 2.355115 GGAGCGGTGGATTTGGGT 59.645 61.111 0.00 0.00 0.00 4.51
93 94 1.595093 GGAGCGGTGGATTTGGGTTG 61.595 60.000 0.00 0.00 0.00 3.77
94 95 2.212900 GAGCGGTGGATTTGGGTTGC 62.213 60.000 0.00 0.00 0.00 4.17
95 96 2.969827 CGGTGGATTTGGGTTGCC 59.030 61.111 0.00 0.00 0.00 4.52
96 97 2.969827 GGTGGATTTGGGTTGCCG 59.030 61.111 0.00 0.00 0.00 5.69
100 101 3.074369 GATTTGGGTTGCCGGGGG 61.074 66.667 2.18 0.00 0.00 5.40
111 112 4.910585 CCGGGGGCGAGAAATCGG 62.911 72.222 0.00 0.00 0.00 4.18
112 113 3.845259 CGGGGGCGAGAAATCGGA 61.845 66.667 0.00 0.00 0.00 4.55
113 114 2.109181 GGGGGCGAGAAATCGGAG 59.891 66.667 0.00 0.00 0.00 4.63
116 117 2.109181 GGCGAGAAATCGGAGGGG 59.891 66.667 0.00 0.00 0.00 4.79
119 120 0.107848 GCGAGAAATCGGAGGGGAAA 60.108 55.000 0.00 0.00 0.00 3.13
120 121 1.941325 CGAGAAATCGGAGGGGAAAG 58.059 55.000 0.00 0.00 0.00 2.62
121 122 1.473434 CGAGAAATCGGAGGGGAAAGG 60.473 57.143 0.00 0.00 0.00 3.11
198 1292 3.839654 CGATCGAAGCGCTTACCTA 57.160 52.632 25.11 9.16 0.00 3.08
230 1365 4.036380 CGTTAATCTATTGGGGCACTTTCC 59.964 45.833 0.00 0.00 0.00 3.13
574 1755 9.403110 TGTTTGGAATGTTTTTGTTCATTTTTG 57.597 25.926 0.00 0.00 34.92 2.44
579 1762 7.427895 GGAATGTTTTTGTTCATTTTTGGAACG 59.572 33.333 0.00 0.00 45.86 3.95
840 2033 9.786105 AAATGTTTGGAATTTTCAAATGTGTTC 57.214 25.926 6.15 0.00 36.64 3.18
848 2042 6.616774 ATTTTCAAATGTGTTCGCCATTTT 57.383 29.167 0.00 0.00 39.77 1.82
849 2043 5.649602 TTTCAAATGTGTTCGCCATTTTC 57.350 34.783 0.00 0.00 39.77 2.29
850 2044 4.313277 TCAAATGTGTTCGCCATTTTCA 57.687 36.364 0.00 0.00 39.77 2.69
851 2045 4.880759 TCAAATGTGTTCGCCATTTTCAT 58.119 34.783 0.00 0.00 39.77 2.57
879 2073 8.928844 ATTGTTCGTAAGTTCAGAAAATAACG 57.071 30.769 0.00 0.00 39.48 3.18
947 2142 9.649167 TTAAGTCTTCTAGCGCTATTAGTTTTT 57.351 29.630 19.19 14.31 0.00 1.94
953 2148 9.486857 CTTCTAGCGCTATTAGTTTTTAAAACC 57.513 33.333 19.19 0.00 0.00 3.27
967 2162 8.317679 AGTTTTTAAAACCTGGCAATGCATATA 58.682 29.630 15.87 0.00 0.00 0.86
979 2174 6.664384 TGGCAATGCATATATGTCACCATATT 59.336 34.615 14.14 2.04 40.60 1.28
986 2181 9.002600 TGCATATATGTCACCATATTTGTTCTC 57.997 33.333 14.14 0.00 40.60 2.87
1032 2227 1.068472 CGAGTAGGCAGTCGTGAGTTT 60.068 52.381 6.16 0.00 41.72 2.66
1045 4051 3.197766 TCGTGAGTTTGAATCCCAGCTAT 59.802 43.478 0.00 0.00 0.00 2.97
1046 4052 3.310774 CGTGAGTTTGAATCCCAGCTATG 59.689 47.826 0.00 0.00 0.00 2.23
1085 4091 3.787634 CGATTTTTCACCATCGCATTCAG 59.212 43.478 0.00 0.00 36.20 3.02
1093 4099 1.366679 CATCGCATTCAGAGCACACT 58.633 50.000 0.00 0.00 0.00 3.55
1172 4181 2.044806 ATGCGGCACATAGGACCTCC 62.045 60.000 4.03 0.00 37.17 4.30
1173 4182 2.731571 GCGGCACATAGGACCTCCA 61.732 63.158 0.00 0.00 38.89 3.86
1174 4183 1.443407 CGGCACATAGGACCTCCAG 59.557 63.158 0.00 0.00 38.89 3.86
1175 4184 1.832912 GGCACATAGGACCTCCAGG 59.167 63.158 0.00 0.00 38.89 4.45
1176 4185 1.700042 GGCACATAGGACCTCCAGGG 61.700 65.000 0.00 0.00 40.27 4.45
1177 4186 1.700042 GCACATAGGACCTCCAGGGG 61.700 65.000 0.00 0.00 40.27 4.79
1178 4187 0.031111 CACATAGGACCTCCAGGGGA 60.031 60.000 0.00 0.00 40.27 4.81
1179 4188 0.722676 ACATAGGACCTCCAGGGGAA 59.277 55.000 0.00 0.00 40.27 3.97
1180 4189 1.344496 ACATAGGACCTCCAGGGGAAG 60.344 57.143 0.00 0.00 40.27 3.46
1181 4190 1.062121 CATAGGACCTCCAGGGGAAGA 60.062 57.143 0.00 0.00 40.27 2.87
1182 4191 0.637195 TAGGACCTCCAGGGGAAGAG 59.363 60.000 0.00 0.00 40.27 2.85
1185 4194 2.367512 CCTCCAGGGGAAGAGGGG 60.368 72.222 0.00 0.00 45.08 4.79
1186 4195 2.787866 CTCCAGGGGAAGAGGGGA 59.212 66.667 0.00 0.00 0.00 4.81
1187 4196 1.319799 CTCCAGGGGAAGAGGGGAT 59.680 63.158 0.00 0.00 0.00 3.85
1188 4197 0.327964 CTCCAGGGGAAGAGGGGATT 60.328 60.000 0.00 0.00 0.00 3.01
1189 4198 0.624500 TCCAGGGGAAGAGGGGATTG 60.625 60.000 0.00 0.00 0.00 2.67
1190 4199 0.921256 CCAGGGGAAGAGGGGATTGT 60.921 60.000 0.00 0.00 0.00 2.71
1191 4200 0.257039 CAGGGGAAGAGGGGATTGTG 59.743 60.000 0.00 0.00 0.00 3.33
1192 4201 0.921256 AGGGGAAGAGGGGATTGTGG 60.921 60.000 0.00 0.00 0.00 4.17
1193 4202 1.214992 GGGGAAGAGGGGATTGTGGT 61.215 60.000 0.00 0.00 0.00 4.16
1194 4203 0.034089 GGGAAGAGGGGATTGTGGTG 60.034 60.000 0.00 0.00 0.00 4.17
1195 4204 0.034089 GGAAGAGGGGATTGTGGTGG 60.034 60.000 0.00 0.00 0.00 4.61
1196 4205 0.681243 GAAGAGGGGATTGTGGTGGC 60.681 60.000 0.00 0.00 0.00 5.01
1197 4206 2.438434 GAGGGGATTGTGGTGGCG 60.438 66.667 0.00 0.00 0.00 5.69
1198 4207 3.995506 GAGGGGATTGTGGTGGCGG 62.996 68.421 0.00 0.00 0.00 6.13
1203 4212 4.612279 ATTGTGGTGGCGGGGCAA 62.612 61.111 0.00 0.00 0.00 4.52
1204 4213 3.903281 ATTGTGGTGGCGGGGCAAT 62.903 57.895 0.00 0.00 0.00 3.56
1205 4214 2.506884 ATTGTGGTGGCGGGGCAATA 62.507 55.000 0.00 0.00 0.00 1.90
1206 4215 2.828549 GTGGTGGCGGGGCAATAG 60.829 66.667 0.00 0.00 0.00 1.73
1207 4216 3.012119 TGGTGGCGGGGCAATAGA 61.012 61.111 0.00 0.00 0.00 1.98
1208 4217 2.203209 GGTGGCGGGGCAATAGAG 60.203 66.667 0.00 0.00 0.00 2.43
1209 4218 2.590092 GTGGCGGGGCAATAGAGT 59.410 61.111 0.00 0.00 0.00 3.24
1210 4219 1.077716 GTGGCGGGGCAATAGAGTT 60.078 57.895 0.00 0.00 0.00 3.01
1211 4220 0.679960 GTGGCGGGGCAATAGAGTTT 60.680 55.000 0.00 0.00 0.00 2.66
1212 4221 0.393808 TGGCGGGGCAATAGAGTTTC 60.394 55.000 0.00 0.00 0.00 2.78
1213 4222 0.393808 GGCGGGGCAATAGAGTTTCA 60.394 55.000 0.00 0.00 0.00 2.69
1214 4223 1.680338 GCGGGGCAATAGAGTTTCAT 58.320 50.000 0.00 0.00 0.00 2.57
1215 4224 1.604278 GCGGGGCAATAGAGTTTCATC 59.396 52.381 0.00 0.00 0.00 2.92
1216 4225 2.222027 CGGGGCAATAGAGTTTCATCC 58.778 52.381 0.00 0.00 0.00 3.51
1217 4226 2.587522 GGGGCAATAGAGTTTCATCCC 58.412 52.381 0.00 0.00 0.00 3.85
1218 4227 2.091885 GGGGCAATAGAGTTTCATCCCA 60.092 50.000 0.00 0.00 34.27 4.37
1219 4228 3.437052 GGGGCAATAGAGTTTCATCCCAT 60.437 47.826 0.00 0.00 34.27 4.00
1220 4229 4.202567 GGGGCAATAGAGTTTCATCCCATA 60.203 45.833 0.00 0.00 34.27 2.74
1221 4230 5.517299 GGGGCAATAGAGTTTCATCCCATAT 60.517 44.000 0.00 0.00 34.27 1.78
1222 4231 6.297010 GGGGCAATAGAGTTTCATCCCATATA 60.297 42.308 0.00 0.00 34.27 0.86
1223 4232 6.825721 GGGCAATAGAGTTTCATCCCATATAG 59.174 42.308 0.00 0.00 32.89 1.31
1224 4233 6.317391 GGCAATAGAGTTTCATCCCATATAGC 59.683 42.308 0.00 0.00 0.00 2.97
1225 4234 6.036517 GCAATAGAGTTTCATCCCATATAGCG 59.963 42.308 0.00 0.00 0.00 4.26
1226 4235 7.323420 CAATAGAGTTTCATCCCATATAGCGA 58.677 38.462 0.00 0.00 0.00 4.93
1227 4236 5.140747 AGAGTTTCATCCCATATAGCGAC 57.859 43.478 0.00 0.00 0.00 5.19
1228 4237 4.021016 AGAGTTTCATCCCATATAGCGACC 60.021 45.833 0.00 0.00 0.00 4.79
1229 4238 2.993899 GTTTCATCCCATATAGCGACCG 59.006 50.000 0.00 0.00 0.00 4.79
1230 4239 0.530744 TCATCCCATATAGCGACCGC 59.469 55.000 6.25 6.25 42.33 5.68
1242 4251 3.214845 GACCGCGGACCCGTAGAT 61.215 66.667 35.90 5.18 42.09 1.98
1243 4252 1.893808 GACCGCGGACCCGTAGATA 60.894 63.158 35.90 0.00 42.09 1.98
1244 4253 1.228367 ACCGCGGACCCGTAGATAT 60.228 57.895 35.90 0.00 42.09 1.63
1245 4254 0.036732 ACCGCGGACCCGTAGATATA 59.963 55.000 35.90 0.00 42.09 0.86
1246 4255 0.449388 CCGCGGACCCGTAGATATAC 59.551 60.000 24.07 0.00 42.09 1.47
1247 4256 1.446907 CGCGGACCCGTAGATATACT 58.553 55.000 10.37 0.00 42.09 2.12
1248 4257 1.129998 CGCGGACCCGTAGATATACTG 59.870 57.143 10.37 0.00 42.09 2.74
1249 4258 2.157738 GCGGACCCGTAGATATACTGT 58.842 52.381 10.37 0.00 42.09 3.55
1250 4259 2.555757 GCGGACCCGTAGATATACTGTT 59.444 50.000 10.37 0.00 42.09 3.16
1251 4260 3.611057 GCGGACCCGTAGATATACTGTTG 60.611 52.174 10.37 0.00 42.09 3.33
1252 4261 3.057736 CGGACCCGTAGATATACTGTTGG 60.058 52.174 0.00 0.00 34.35 3.77
1253 4262 4.147321 GGACCCGTAGATATACTGTTGGA 58.853 47.826 0.00 0.00 0.00 3.53
1254 4263 4.586001 GGACCCGTAGATATACTGTTGGAA 59.414 45.833 0.00 0.00 0.00 3.53
1255 4264 5.278858 GGACCCGTAGATATACTGTTGGAAG 60.279 48.000 0.00 0.00 0.00 3.46
1256 4265 5.206587 ACCCGTAGATATACTGTTGGAAGT 58.793 41.667 0.00 0.00 0.00 3.01
1257 4266 5.659971 ACCCGTAGATATACTGTTGGAAGTT 59.340 40.000 0.00 0.00 0.00 2.66
1258 4267 6.155737 ACCCGTAGATATACTGTTGGAAGTTT 59.844 38.462 0.00 0.00 0.00 2.66
1259 4268 6.700520 CCCGTAGATATACTGTTGGAAGTTTC 59.299 42.308 0.00 0.00 0.00 2.78
1260 4269 7.417570 CCCGTAGATATACTGTTGGAAGTTTCT 60.418 40.741 0.00 0.00 0.00 2.52
1261 4270 7.435488 CCGTAGATATACTGTTGGAAGTTTCTG 59.565 40.741 0.00 0.00 0.00 3.02
1262 4271 7.435488 CGTAGATATACTGTTGGAAGTTTCTGG 59.565 40.741 0.00 0.00 0.00 3.86
1263 4272 7.496346 AGATATACTGTTGGAAGTTTCTGGA 57.504 36.000 0.00 0.00 0.00 3.86
1264 4273 7.331791 AGATATACTGTTGGAAGTTTCTGGAC 58.668 38.462 0.00 0.00 0.00 4.02
1265 4274 2.932261 ACTGTTGGAAGTTTCTGGACC 58.068 47.619 0.00 0.00 0.00 4.46
1266 4275 2.241176 ACTGTTGGAAGTTTCTGGACCA 59.759 45.455 0.00 0.00 0.00 4.02
1267 4276 2.618709 CTGTTGGAAGTTTCTGGACCAC 59.381 50.000 0.00 0.00 0.00 4.16
1268 4277 2.241176 TGTTGGAAGTTTCTGGACCACT 59.759 45.455 0.00 0.00 0.00 4.00
1269 4278 2.618709 GTTGGAAGTTTCTGGACCACTG 59.381 50.000 0.00 0.00 0.00 3.66
1270 4279 1.843851 TGGAAGTTTCTGGACCACTGT 59.156 47.619 0.00 0.00 0.00 3.55
1271 4280 3.042682 TGGAAGTTTCTGGACCACTGTA 58.957 45.455 0.00 0.00 0.00 2.74
1272 4281 3.456644 TGGAAGTTTCTGGACCACTGTAA 59.543 43.478 0.00 0.00 0.00 2.41
1273 4282 3.813724 GGAAGTTTCTGGACCACTGTAAC 59.186 47.826 0.00 0.00 0.00 2.50
1274 4283 4.448210 GAAGTTTCTGGACCACTGTAACA 58.552 43.478 0.00 0.00 33.02 2.41
1275 4284 4.706842 AGTTTCTGGACCACTGTAACAT 57.293 40.909 0.00 0.00 33.02 2.71
1276 4285 5.048846 AGTTTCTGGACCACTGTAACATT 57.951 39.130 0.00 0.00 33.02 2.71
1277 4286 5.445964 AGTTTCTGGACCACTGTAACATTT 58.554 37.500 0.00 0.00 33.02 2.32
1278 4287 5.891551 AGTTTCTGGACCACTGTAACATTTT 59.108 36.000 0.00 0.00 33.02 1.82
1279 4288 7.057894 AGTTTCTGGACCACTGTAACATTTTA 58.942 34.615 0.00 0.00 33.02 1.52
1280 4289 6.870971 TTCTGGACCACTGTAACATTTTAC 57.129 37.500 0.00 0.00 38.51 2.01
1281 4290 4.992319 TCTGGACCACTGTAACATTTTACG 59.008 41.667 0.00 0.00 40.61 3.18
1282 4291 4.066490 TGGACCACTGTAACATTTTACGG 58.934 43.478 8.71 8.71 46.37 4.02
1283 4292 3.437741 GGACCACTGTAACATTTTACGGG 59.562 47.826 13.74 9.47 45.56 5.28
1284 4293 2.815503 ACCACTGTAACATTTTACGGGC 59.184 45.455 13.74 0.00 45.56 6.13
1285 4294 2.162809 CCACTGTAACATTTTACGGGCC 59.837 50.000 13.74 0.00 45.56 5.80
1286 4295 2.078392 ACTGTAACATTTTACGGGCCG 58.922 47.619 27.06 27.06 45.56 6.13
1287 4296 1.399089 CTGTAACATTTTACGGGCCGG 59.601 52.381 31.78 13.71 40.61 6.13
1288 4297 0.734309 GTAACATTTTACGGGCCGGG 59.266 55.000 31.78 13.98 0.00 5.73
1289 4298 0.394080 TAACATTTTACGGGCCGGGG 60.394 55.000 31.78 14.35 0.00 5.73
1290 4299 3.523668 CATTTTACGGGCCGGGGC 61.524 66.667 31.78 13.01 41.06 5.80
1297 4306 3.697747 CGGGCCGGGGCGATTATA 61.698 66.667 20.56 0.00 43.06 0.98
1298 4307 2.046604 GGGCCGGGGCGATTATAC 60.047 66.667 15.03 0.00 43.06 1.47
1299 4308 2.745037 GGCCGGGGCGATTATACA 59.255 61.111 4.27 0.00 43.06 2.29
1300 4309 1.375523 GGCCGGGGCGATTATACAG 60.376 63.158 4.27 0.00 43.06 2.74
1301 4310 1.669440 GCCGGGGCGATTATACAGA 59.331 57.895 2.18 0.00 0.00 3.41
1302 4311 0.389948 GCCGGGGCGATTATACAGAG 60.390 60.000 2.18 0.00 0.00 3.35
1303 4312 0.966920 CCGGGGCGATTATACAGAGT 59.033 55.000 0.00 0.00 0.00 3.24
1304 4313 1.067776 CCGGGGCGATTATACAGAGTC 60.068 57.143 0.00 0.00 0.00 3.36
1305 4314 1.887198 CGGGGCGATTATACAGAGTCT 59.113 52.381 0.00 0.00 0.00 3.24
1306 4315 3.079578 CGGGGCGATTATACAGAGTCTA 58.920 50.000 0.00 0.00 0.00 2.59
1307 4316 3.504906 CGGGGCGATTATACAGAGTCTAA 59.495 47.826 0.00 0.00 0.00 2.10
1308 4317 4.158025 CGGGGCGATTATACAGAGTCTAAT 59.842 45.833 0.00 0.00 0.00 1.73
1309 4318 5.652518 GGGGCGATTATACAGAGTCTAATC 58.347 45.833 0.00 0.00 32.17 1.75
1310 4319 5.394333 GGGGCGATTATACAGAGTCTAATCC 60.394 48.000 7.49 2.43 31.97 3.01
1311 4320 5.185249 GGGCGATTATACAGAGTCTAATCCA 59.815 44.000 7.49 0.00 31.97 3.41
1312 4321 6.295123 GGGCGATTATACAGAGTCTAATCCAA 60.295 42.308 7.49 0.00 31.97 3.53
1313 4322 7.152645 GGCGATTATACAGAGTCTAATCCAAA 58.847 38.462 7.49 0.00 31.97 3.28
1314 4323 7.656137 GGCGATTATACAGAGTCTAATCCAAAA 59.344 37.037 7.49 0.00 31.97 2.44
1315 4324 9.042008 GCGATTATACAGAGTCTAATCCAAAAA 57.958 33.333 7.49 0.00 31.97 1.94
1340 4349 8.836268 AAAAACAGGTCAAATACGTATAGTCA 57.164 30.769 8.83 0.00 0.00 3.41
1341 4350 9.444600 AAAAACAGGTCAAATACGTATAGTCAT 57.555 29.630 8.83 0.00 0.00 3.06
1342 4351 8.644318 AAACAGGTCAAATACGTATAGTCATC 57.356 34.615 8.83 0.00 0.00 2.92
1343 4352 6.436261 ACAGGTCAAATACGTATAGTCATCG 58.564 40.000 8.83 0.00 0.00 3.84
1344 4353 6.261603 ACAGGTCAAATACGTATAGTCATCGA 59.738 38.462 8.83 0.00 0.00 3.59
1345 4354 7.136772 CAGGTCAAATACGTATAGTCATCGAA 58.863 38.462 8.83 0.00 0.00 3.71
1346 4355 7.646526 CAGGTCAAATACGTATAGTCATCGAAA 59.353 37.037 8.83 0.00 0.00 3.46
1347 4356 8.358148 AGGTCAAATACGTATAGTCATCGAAAT 58.642 33.333 8.83 0.00 0.00 2.17
1348 4357 8.975439 GGTCAAATACGTATAGTCATCGAAATT 58.025 33.333 8.83 0.00 0.00 1.82
1356 4365 8.746530 ACGTATAGTCATCGAAATTATATGGGT 58.253 33.333 13.05 4.86 0.00 4.51
1357 4366 9.234384 CGTATAGTCATCGAAATTATATGGGTC 57.766 37.037 0.00 0.00 0.00 4.46
1358 4367 9.234384 GTATAGTCATCGAAATTATATGGGTCG 57.766 37.037 0.00 0.00 0.00 4.79
1359 4368 5.479306 AGTCATCGAAATTATATGGGTCGG 58.521 41.667 0.00 0.00 32.68 4.79
1360 4369 4.630069 GTCATCGAAATTATATGGGTCGGG 59.370 45.833 0.00 0.00 32.68 5.14
1361 4370 3.048337 TCGAAATTATATGGGTCGGGC 57.952 47.619 0.00 0.00 32.68 6.13
1362 4371 1.730064 CGAAATTATATGGGTCGGGCG 59.270 52.381 0.00 0.00 0.00 6.13
1363 4372 1.467342 GAAATTATATGGGTCGGGCGC 59.533 52.381 0.00 0.00 0.00 6.53
1364 4373 0.690762 AATTATATGGGTCGGGCGCT 59.309 50.000 7.64 0.00 0.00 5.92
1365 4374 0.690762 ATTATATGGGTCGGGCGCTT 59.309 50.000 7.64 0.00 0.00 4.68
1366 4375 0.470766 TTATATGGGTCGGGCGCTTT 59.529 50.000 7.64 0.00 0.00 3.51
1367 4376 0.470766 TATATGGGTCGGGCGCTTTT 59.529 50.000 7.64 0.00 0.00 2.27
1368 4377 0.470766 ATATGGGTCGGGCGCTTTTA 59.529 50.000 7.64 0.00 0.00 1.52
1369 4378 0.462403 TATGGGTCGGGCGCTTTTAC 60.462 55.000 7.64 0.37 0.00 2.01
1370 4379 3.493440 GGGTCGGGCGCTTTTACG 61.493 66.667 7.64 4.99 0.00 3.18
1371 4380 3.493440 GGTCGGGCGCTTTTACGG 61.493 66.667 7.64 0.00 0.00 4.02
1372 4381 2.739671 GTCGGGCGCTTTTACGGT 60.740 61.111 7.64 0.00 0.00 4.83
1373 4382 2.739287 TCGGGCGCTTTTACGGTG 60.739 61.111 7.64 0.00 0.00 4.94
1374 4383 3.045492 CGGGCGCTTTTACGGTGT 61.045 61.111 7.64 0.00 0.00 4.16
1375 4384 2.865308 GGGCGCTTTTACGGTGTC 59.135 61.111 7.64 0.00 0.00 3.67
1376 4385 1.670083 GGGCGCTTTTACGGTGTCT 60.670 57.895 7.64 0.00 0.00 3.41
1377 4386 1.495951 GGCGCTTTTACGGTGTCTG 59.504 57.895 7.64 0.00 0.00 3.51
1378 4387 1.154469 GCGCTTTTACGGTGTCTGC 60.154 57.895 0.00 0.00 0.00 4.26
1379 4388 1.566018 GCGCTTTTACGGTGTCTGCT 61.566 55.000 0.00 0.00 0.00 4.24
1380 4389 1.705256 CGCTTTTACGGTGTCTGCTA 58.295 50.000 0.00 0.00 0.00 3.49
1381 4390 1.654105 CGCTTTTACGGTGTCTGCTAG 59.346 52.381 0.00 0.00 0.00 3.42
1382 4391 2.670229 CGCTTTTACGGTGTCTGCTAGA 60.670 50.000 0.00 0.00 0.00 2.43
1383 4392 2.924290 GCTTTTACGGTGTCTGCTAGAG 59.076 50.000 0.00 0.00 0.00 2.43
1384 4393 3.367087 GCTTTTACGGTGTCTGCTAGAGA 60.367 47.826 0.00 0.00 0.00 3.10
1385 4394 4.678309 GCTTTTACGGTGTCTGCTAGAGAT 60.678 45.833 0.00 0.00 31.63 2.75
1386 4395 4.371855 TTTACGGTGTCTGCTAGAGATG 57.628 45.455 0.00 0.00 31.63 2.90
1387 4396 0.457851 ACGGTGTCTGCTAGAGATGC 59.542 55.000 0.00 0.00 31.63 3.91
1388 4397 0.743688 CGGTGTCTGCTAGAGATGCT 59.256 55.000 0.00 0.00 31.63 3.79
1389 4398 1.268999 CGGTGTCTGCTAGAGATGCTC 60.269 57.143 0.00 0.00 31.63 4.26
1400 4409 2.663188 GATGCTCTAAGGCCGGCG 60.663 66.667 22.54 6.52 0.00 6.46
1426 4435 3.984193 CTCCTGGGCTTTGGGCTCG 62.984 68.421 0.00 0.00 46.29 5.03
1445 4454 3.059884 TCGTGCATCTTCTTGTCTTGAC 58.940 45.455 0.00 0.00 0.00 3.18
1446 4455 2.158449 CGTGCATCTTCTTGTCTTGACC 59.842 50.000 0.00 0.00 0.00 4.02
1447 4456 3.406764 GTGCATCTTCTTGTCTTGACCT 58.593 45.455 0.00 0.00 0.00 3.85
1448 4457 3.817647 GTGCATCTTCTTGTCTTGACCTT 59.182 43.478 0.00 0.00 0.00 3.50
1449 4458 3.817084 TGCATCTTCTTGTCTTGACCTTG 59.183 43.478 0.00 0.00 0.00 3.61
1484 4499 1.281925 CCACCCCTACCTGCTCCAAT 61.282 60.000 0.00 0.00 0.00 3.16
1538 4553 1.340248 ACCACGCTCGATCCGAATTAT 59.660 47.619 11.85 0.00 34.74 1.28
1541 4556 2.405357 CACGCTCGATCCGAATTATGAC 59.595 50.000 11.85 0.00 34.74 3.06
1542 4557 2.293677 ACGCTCGATCCGAATTATGACT 59.706 45.455 11.85 0.00 34.74 3.41
1614 4629 4.268687 CACCCGTTGCAGTCTCTC 57.731 61.111 0.00 0.00 0.00 3.20
1665 4680 2.094442 CCTCTTCTTCTCCGACAAGGAC 60.094 54.545 0.00 0.00 45.98 3.85
2179 5194 1.982395 CACGGCACCTACTCCCTGA 60.982 63.158 0.00 0.00 0.00 3.86
2208 5223 5.486735 AGAAGATCTCCTATGGCATCAAG 57.513 43.478 1.65 0.00 0.00 3.02
2209 5224 4.286549 AGAAGATCTCCTATGGCATCAAGG 59.713 45.833 1.65 6.61 0.00 3.61
2455 5471 2.932234 CGGTCGTTCCTCCTGCACT 61.932 63.158 0.00 0.00 0.00 4.40
2496 5512 1.059369 CTGCGTCGCCAAATTCTCG 59.941 57.895 15.88 0.00 0.00 4.04
2500 5516 1.866237 GTCGCCAAATTCTCGCACA 59.134 52.632 0.00 0.00 0.00 4.57
2646 5662 2.226962 AACCCGTCTGCCTACTCTAA 57.773 50.000 0.00 0.00 0.00 2.10
2731 5753 4.870426 CGGAGTATCAAAGTTAGCATGTGT 59.130 41.667 0.00 0.00 36.25 3.72
2796 5818 9.581099 AGTACAATTTGTAAGTTGGTTTTCAAG 57.419 29.630 10.73 0.00 34.21 3.02
2799 5821 7.333174 ACAATTTGTAAGTTGGTTTTCAAGTGG 59.667 33.333 0.00 0.00 38.88 4.00
2832 5856 8.498358 CATGCTGAGAAATACGAAAAGCATATA 58.502 33.333 6.90 0.00 45.46 0.86
2839 5863 9.337396 AGAAATACGAAAAGCATATACATGGAA 57.663 29.630 0.00 0.00 32.36 3.53
2915 5939 7.920151 TGTCCATGACAAGAACAAACAAATAAG 59.080 33.333 0.00 0.00 39.78 1.73
3044 6077 4.501071 ACACTATGTACATTCGGGTGTTC 58.499 43.478 14.77 0.00 33.50 3.18
3050 6085 1.743995 CATTCGGGTGTTCGGGGTC 60.744 63.158 0.00 0.00 0.00 4.46
3077 6112 4.170062 CCAGAGGCGCGCAACATG 62.170 66.667 34.42 23.36 0.00 3.21
3085 6120 1.583451 CGCGCAACATGGTATGCAC 60.583 57.895 8.75 8.99 42.68 4.57
3089 6124 1.468127 CGCAACATGGTATGCACTTCA 59.532 47.619 17.05 0.00 42.68 3.02
3107 6143 1.275010 TCACGGTGTAGATGCATGTGT 59.725 47.619 2.46 0.00 32.84 3.72
3109 6145 2.094258 CACGGTGTAGATGCATGTGTTC 59.906 50.000 2.46 0.00 0.00 3.18
3119 6155 6.441093 AGATGCATGTGTTCATTTCGTATT 57.559 33.333 2.46 0.00 31.15 1.89
3231 6267 7.754851 TTTACCAAATTCTAACTCCAACTCC 57.245 36.000 0.00 0.00 0.00 3.85
3264 6300 0.588252 CAAGGTCCAGTGTTTGCTCG 59.412 55.000 0.00 0.00 0.00 5.03
3293 6329 1.925255 TGGAGATTTTGGAGAGCCCAT 59.075 47.619 0.00 0.00 46.10 4.00
3357 6393 0.809385 TCGACTCGATTCGCTCCTTT 59.191 50.000 19.17 0.00 38.95 3.11
3380 6416 2.042831 GCACCTTTGCTCTGCGGAT 61.043 57.895 0.00 0.00 46.17 4.18
3387 6423 1.737838 TTGCTCTGCGGATTTCGATT 58.262 45.000 0.00 0.00 42.43 3.34
3393 6429 4.363999 CTCTGCGGATTTCGATTTCTAGT 58.636 43.478 0.00 0.00 42.43 2.57
3614 6650 6.243148 ACTGTACCCTTGTTCGGAATAAAAT 58.757 36.000 1.59 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.072332 CCACAACACCACATCCGGA 59.928 57.895 6.61 6.61 0.00 5.14
1 2 2.625823 GCCACAACACCACATCCGG 61.626 63.158 0.00 0.00 0.00 5.14
2 3 1.896183 TGCCACAACACCACATCCG 60.896 57.895 0.00 0.00 0.00 4.18
3 4 1.659794 GTGCCACAACACCACATCC 59.340 57.895 0.00 0.00 34.35 3.51
10 11 1.453015 TGGTGAGGTGCCACAACAC 60.453 57.895 12.85 12.85 38.74 3.32
11 12 3.002371 TGGTGAGGTGCCACAACA 58.998 55.556 2.29 2.29 38.74 3.33
16 17 3.625897 CGGAGTGGTGAGGTGCCA 61.626 66.667 0.00 0.00 0.00 4.92
17 18 4.394712 CCGGAGTGGTGAGGTGCC 62.395 72.222 0.00 0.00 0.00 5.01
20 21 1.460689 TTTCCCGGAGTGGTGAGGT 60.461 57.895 0.73 0.00 35.15 3.85
22 23 0.396811 AAGTTTCCCGGAGTGGTGAG 59.603 55.000 0.73 0.00 35.15 3.51
24 25 0.107831 TGAAGTTTCCCGGAGTGGTG 59.892 55.000 0.73 0.00 35.15 4.17
25 26 1.064825 ATGAAGTTTCCCGGAGTGGT 58.935 50.000 0.73 0.00 35.15 4.16
27 28 1.271379 ACCATGAAGTTTCCCGGAGTG 60.271 52.381 0.73 0.00 0.00 3.51
28 29 1.064825 ACCATGAAGTTTCCCGGAGT 58.935 50.000 0.73 0.00 0.00 3.85
30 31 0.037590 CCACCATGAAGTTTCCCGGA 59.962 55.000 0.73 0.00 0.00 5.14
31 32 1.595093 GCCACCATGAAGTTTCCCGG 61.595 60.000 0.00 0.00 0.00 5.73
32 33 1.883021 GCCACCATGAAGTTTCCCG 59.117 57.895 0.00 0.00 0.00 5.14
33 34 1.595093 CCGCCACCATGAAGTTTCCC 61.595 60.000 0.00 0.00 0.00 3.97
34 35 0.608035 TCCGCCACCATGAAGTTTCC 60.608 55.000 0.00 0.00 0.00 3.13
36 37 1.004745 AGATCCGCCACCATGAAGTTT 59.995 47.619 0.00 0.00 0.00 2.66
37 38 0.620556 AGATCCGCCACCATGAAGTT 59.379 50.000 0.00 0.00 0.00 2.66
38 39 0.179000 GAGATCCGCCACCATGAAGT 59.821 55.000 0.00 0.00 0.00 3.01
39 40 0.467384 AGAGATCCGCCACCATGAAG 59.533 55.000 0.00 0.00 0.00 3.02
40 41 0.465705 GAGAGATCCGCCACCATGAA 59.534 55.000 0.00 0.00 0.00 2.57
44 45 3.147595 CCGAGAGATCCGCCACCA 61.148 66.667 0.00 0.00 0.00 4.17
45 46 4.593864 GCCGAGAGATCCGCCACC 62.594 72.222 0.00 0.00 0.00 4.61
49 50 3.256716 CTACCGCCGAGAGATCCGC 62.257 68.421 0.00 0.00 0.00 5.54
50 51 2.947542 CTACCGCCGAGAGATCCG 59.052 66.667 0.00 0.00 0.00 4.18
51 52 2.646143 GCTACCGCCGAGAGATCC 59.354 66.667 0.00 0.00 0.00 3.36
53 54 3.288290 CCGCTACCGCCGAGAGAT 61.288 66.667 0.00 0.00 0.00 2.75
55 56 3.955101 CTCCGCTACCGCCGAGAG 61.955 72.222 0.00 0.00 41.95 3.20
56 57 4.790962 ACTCCGCTACCGCCGAGA 62.791 66.667 9.10 0.00 41.95 4.04
60 61 4.208686 CTCCACTCCGCTACCGCC 62.209 72.222 0.00 0.00 0.00 6.13
62 63 4.554363 CGCTCCACTCCGCTACCG 62.554 72.222 0.00 0.00 0.00 4.02
63 64 4.208686 CCGCTCCACTCCGCTACC 62.209 72.222 0.00 0.00 0.00 3.18
64 65 3.450115 ACCGCTCCACTCCGCTAC 61.450 66.667 0.00 0.00 0.00 3.58
65 66 3.449227 CACCGCTCCACTCCGCTA 61.449 66.667 0.00 0.00 0.00 4.26
69 70 1.026718 CAAATCCACCGCTCCACTCC 61.027 60.000 0.00 0.00 0.00 3.85
70 71 1.026718 CCAAATCCACCGCTCCACTC 61.027 60.000 0.00 0.00 0.00 3.51
72 73 2.046285 CCCAAATCCACCGCTCCAC 61.046 63.158 0.00 0.00 0.00 4.02
73 74 2.075355 AACCCAAATCCACCGCTCCA 62.075 55.000 0.00 0.00 0.00 3.86
74 75 1.304134 AACCCAAATCCACCGCTCC 60.304 57.895 0.00 0.00 0.00 4.70
76 77 2.275380 GCAACCCAAATCCACCGCT 61.275 57.895 0.00 0.00 0.00 5.52
79 80 2.645192 CCGGCAACCCAAATCCACC 61.645 63.158 0.00 0.00 0.00 4.61
81 82 2.283532 CCCGGCAACCCAAATCCA 60.284 61.111 0.00 0.00 0.00 3.41
82 83 3.074369 CCCCGGCAACCCAAATCC 61.074 66.667 0.00 0.00 0.00 3.01
83 84 3.074369 CCCCCGGCAACCCAAATC 61.074 66.667 0.00 0.00 0.00 2.17
94 95 4.910585 CCGATTTCTCGCCCCCGG 62.911 72.222 0.00 0.00 43.66 5.73
95 96 3.792053 CTCCGATTTCTCGCCCCCG 62.792 68.421 0.00 0.00 43.66 5.73
96 97 2.109181 CTCCGATTTCTCGCCCCC 59.891 66.667 0.00 0.00 43.66 5.40
100 101 0.107848 TTTCCCCTCCGATTTCTCGC 60.108 55.000 0.00 0.00 43.66 5.03
101 102 1.473434 CCTTTCCCCTCCGATTTCTCG 60.473 57.143 0.00 0.00 44.62 4.04
103 104 0.919710 CCCTTTCCCCTCCGATTTCT 59.080 55.000 0.00 0.00 0.00 2.52
104 105 0.106669 CCCCTTTCCCCTCCGATTTC 60.107 60.000 0.00 0.00 0.00 2.17
105 106 1.580994 CCCCCTTTCCCCTCCGATTT 61.581 60.000 0.00 0.00 0.00 2.17
106 107 2.006991 CCCCCTTTCCCCTCCGATT 61.007 63.158 0.00 0.00 0.00 3.34
107 108 2.368329 CCCCCTTTCCCCTCCGAT 60.368 66.667 0.00 0.00 0.00 4.18
108 109 2.501943 ATTCCCCCTTTCCCCTCCGA 62.502 60.000 0.00 0.00 0.00 4.55
109 110 1.580994 AATTCCCCCTTTCCCCTCCG 61.581 60.000 0.00 0.00 0.00 4.63
110 111 0.261991 GAATTCCCCCTTTCCCCTCC 59.738 60.000 0.00 0.00 0.00 4.30
111 112 0.261991 GGAATTCCCCCTTTCCCCTC 59.738 60.000 14.03 0.00 36.24 4.30
112 113 2.421317 GGAATTCCCCCTTTCCCCT 58.579 57.895 14.03 0.00 36.24 4.79
193 1287 2.870035 TTAACGGGCCGGCCTAGGTA 62.870 60.000 42.70 34.12 36.10 3.08
198 1292 1.125711 ATAGATTAACGGGCCGGCCT 61.126 55.000 42.70 27.41 36.10 5.19
230 1365 4.215613 CCTTCTAGAAGTTTCCCAAAACCG 59.784 45.833 26.83 6.89 44.87 4.44
512 1690 5.678583 TGAGAACAATTTTTGAAATGCCCA 58.321 33.333 0.00 0.00 0.00 5.36
574 1755 4.408694 CCGGTCATTATTTGAAACGTTCC 58.591 43.478 0.00 0.00 36.05 3.62
579 1762 8.989653 TTTAAATCCCGGTCATTATTTGAAAC 57.010 30.769 0.00 0.00 35.70 2.78
817 2010 6.456181 GCGAACACATTTGAAAATTCCAAACA 60.456 34.615 7.77 0.00 36.48 2.83
826 2019 5.582269 TGAAAATGGCGAACACATTTGAAAA 59.418 32.000 4.39 0.00 45.07 2.29
835 2028 6.704512 ACAATTTATGAAAATGGCGAACAC 57.295 33.333 0.00 0.00 35.46 3.32
837 2030 6.088883 ACGAACAATTTATGAAAATGGCGAAC 59.911 34.615 0.00 0.00 35.46 3.95
840 2033 7.272515 ACTTACGAACAATTTATGAAAATGGCG 59.727 33.333 0.00 0.00 35.46 5.69
916 2111 4.522722 AGCGCTAGAAGACTTAACACTT 57.477 40.909 8.99 0.00 0.00 3.16
929 2124 8.662141 CAGGTTTTAAAAACTAATAGCGCTAGA 58.338 33.333 23.37 12.15 33.31 2.43
947 2142 6.548993 TGACATATATGCATTGCCAGGTTTTA 59.451 34.615 12.79 0.00 0.00 1.52
953 2148 3.822167 TGGTGACATATATGCATTGCCAG 59.178 43.478 12.79 0.00 33.40 4.85
979 2174 1.068333 GGTACCACTACGCGAGAACAA 60.068 52.381 15.93 0.00 0.00 2.83
986 2181 0.029035 CTAGCTGGTACCACTACGCG 59.971 60.000 11.60 3.53 0.00 6.01
1032 2227 7.573710 AGTTATTACAACATAGCTGGGATTCA 58.426 34.615 0.00 0.00 0.00 2.57
1085 4091 2.570181 GCCCATTGCAGTGTGCTC 59.430 61.111 9.37 0.00 45.31 4.26
1172 4181 0.257039 CACAATCCCCTCTTCCCCTG 59.743 60.000 0.00 0.00 0.00 4.45
1173 4182 0.921256 CCACAATCCCCTCTTCCCCT 60.921 60.000 0.00 0.00 0.00 4.79
1174 4183 1.214992 ACCACAATCCCCTCTTCCCC 61.215 60.000 0.00 0.00 0.00 4.81
1175 4184 0.034089 CACCACAATCCCCTCTTCCC 60.034 60.000 0.00 0.00 0.00 3.97
1176 4185 0.034089 CCACCACAATCCCCTCTTCC 60.034 60.000 0.00 0.00 0.00 3.46
1177 4186 0.681243 GCCACCACAATCCCCTCTTC 60.681 60.000 0.00 0.00 0.00 2.87
1178 4187 1.384191 GCCACCACAATCCCCTCTT 59.616 57.895 0.00 0.00 0.00 2.85
1179 4188 2.971598 CGCCACCACAATCCCCTCT 61.972 63.158 0.00 0.00 0.00 3.69
1180 4189 2.438434 CGCCACCACAATCCCCTC 60.438 66.667 0.00 0.00 0.00 4.30
1181 4190 4.047125 CCGCCACCACAATCCCCT 62.047 66.667 0.00 0.00 0.00 4.79
1186 4195 2.506884 TATTGCCCCGCCACCACAAT 62.507 55.000 0.00 0.00 35.31 2.71
1187 4196 3.211403 TATTGCCCCGCCACCACAA 62.211 57.895 0.00 0.00 0.00 3.33
1188 4197 3.636929 CTATTGCCCCGCCACCACA 62.637 63.158 0.00 0.00 0.00 4.17
1189 4198 2.828549 CTATTGCCCCGCCACCAC 60.829 66.667 0.00 0.00 0.00 4.16
1190 4199 3.012119 TCTATTGCCCCGCCACCA 61.012 61.111 0.00 0.00 0.00 4.17
1191 4200 2.203209 CTCTATTGCCCCGCCACC 60.203 66.667 0.00 0.00 0.00 4.61
1192 4201 0.679960 AAACTCTATTGCCCCGCCAC 60.680 55.000 0.00 0.00 0.00 5.01
1193 4202 0.393808 GAAACTCTATTGCCCCGCCA 60.394 55.000 0.00 0.00 0.00 5.69
1194 4203 0.393808 TGAAACTCTATTGCCCCGCC 60.394 55.000 0.00 0.00 0.00 6.13
1195 4204 1.604278 GATGAAACTCTATTGCCCCGC 59.396 52.381 0.00 0.00 0.00 6.13
1196 4205 2.222027 GGATGAAACTCTATTGCCCCG 58.778 52.381 0.00 0.00 0.00 5.73
1197 4206 2.091885 TGGGATGAAACTCTATTGCCCC 60.092 50.000 0.00 0.00 33.35 5.80
1198 4207 3.297134 TGGGATGAAACTCTATTGCCC 57.703 47.619 0.00 0.00 34.90 5.36
1199 4208 6.317391 GCTATATGGGATGAAACTCTATTGCC 59.683 42.308 0.00 0.00 0.00 4.52
1200 4209 6.036517 CGCTATATGGGATGAAACTCTATTGC 59.963 42.308 0.00 0.00 0.00 3.56
1201 4210 7.276658 GTCGCTATATGGGATGAAACTCTATTG 59.723 40.741 0.00 0.00 39.82 1.90
1202 4211 7.324178 GTCGCTATATGGGATGAAACTCTATT 58.676 38.462 0.00 0.00 39.82 1.73
1203 4212 6.127310 GGTCGCTATATGGGATGAAACTCTAT 60.127 42.308 0.00 0.00 39.82 1.98
1204 4213 5.185249 GGTCGCTATATGGGATGAAACTCTA 59.815 44.000 0.00 0.00 39.82 2.43
1205 4214 4.021016 GGTCGCTATATGGGATGAAACTCT 60.021 45.833 0.00 0.00 39.82 3.24
1206 4215 4.246458 GGTCGCTATATGGGATGAAACTC 58.754 47.826 0.00 0.00 39.82 3.01
1207 4216 3.306088 CGGTCGCTATATGGGATGAAACT 60.306 47.826 0.00 0.00 39.82 2.66
1208 4217 2.993899 CGGTCGCTATATGGGATGAAAC 59.006 50.000 0.00 0.00 39.82 2.78
1209 4218 2.611971 GCGGTCGCTATATGGGATGAAA 60.612 50.000 8.20 0.00 39.82 2.69
1210 4219 1.067142 GCGGTCGCTATATGGGATGAA 60.067 52.381 8.20 0.00 39.82 2.57
1211 4220 0.530744 GCGGTCGCTATATGGGATGA 59.469 55.000 8.20 0.00 39.82 2.92
1212 4221 0.802222 CGCGGTCGCTATATGGGATG 60.802 60.000 13.51 0.00 39.82 3.51
1213 4222 1.511305 CGCGGTCGCTATATGGGAT 59.489 57.895 13.51 0.00 39.82 3.85
1214 4223 2.632544 CCGCGGTCGCTATATGGGA 61.633 63.158 19.50 0.00 39.32 4.37
1215 4224 2.126071 CCGCGGTCGCTATATGGG 60.126 66.667 19.50 2.33 39.32 4.00
1216 4225 1.443872 GTCCGCGGTCGCTATATGG 60.444 63.158 27.15 6.81 39.32 2.74
1217 4226 1.443872 GGTCCGCGGTCGCTATATG 60.444 63.158 27.15 0.00 39.32 1.78
1218 4227 2.633509 GGGTCCGCGGTCGCTATAT 61.634 63.158 27.27 0.00 39.32 0.86
1219 4228 3.289834 GGGTCCGCGGTCGCTATA 61.290 66.667 27.27 4.18 39.32 1.31
1225 4234 1.239968 ATATCTACGGGTCCGCGGTC 61.240 60.000 27.15 20.62 44.19 4.79
1226 4235 0.036732 TATATCTACGGGTCCGCGGT 59.963 55.000 27.15 7.91 44.19 5.68
1227 4236 0.449388 GTATATCTACGGGTCCGCGG 59.551 60.000 22.12 22.12 44.19 6.46
1228 4237 1.129998 CAGTATATCTACGGGTCCGCG 59.870 57.143 9.55 0.00 44.19 6.46
1229 4238 2.157738 ACAGTATATCTACGGGTCCGC 58.842 52.381 9.55 0.00 44.19 5.54
1230 4239 3.057736 CCAACAGTATATCTACGGGTCCG 60.058 52.174 7.97 7.97 46.03 4.79
1231 4240 4.147321 TCCAACAGTATATCTACGGGTCC 58.853 47.826 0.00 0.00 32.82 4.46
1232 4241 5.301298 ACTTCCAACAGTATATCTACGGGTC 59.699 44.000 0.00 0.00 32.82 4.46
1233 4242 5.206587 ACTTCCAACAGTATATCTACGGGT 58.793 41.667 0.00 0.00 32.82 5.28
1234 4243 5.786264 ACTTCCAACAGTATATCTACGGG 57.214 43.478 0.00 0.00 32.82 5.28
1235 4244 7.435488 CAGAAACTTCCAACAGTATATCTACGG 59.565 40.741 0.00 0.00 32.82 4.02
1236 4245 7.435488 CCAGAAACTTCCAACAGTATATCTACG 59.565 40.741 0.00 0.00 32.82 3.51
1237 4246 8.475639 TCCAGAAACTTCCAACAGTATATCTAC 58.524 37.037 0.00 0.00 0.00 2.59
1238 4247 8.475639 GTCCAGAAACTTCCAACAGTATATCTA 58.524 37.037 0.00 0.00 0.00 1.98
1239 4248 7.331791 GTCCAGAAACTTCCAACAGTATATCT 58.668 38.462 0.00 0.00 0.00 1.98
1240 4249 6.539103 GGTCCAGAAACTTCCAACAGTATATC 59.461 42.308 0.00 0.00 0.00 1.63
1241 4250 6.012858 TGGTCCAGAAACTTCCAACAGTATAT 60.013 38.462 0.00 0.00 0.00 0.86
1242 4251 5.308497 TGGTCCAGAAACTTCCAACAGTATA 59.692 40.000 0.00 0.00 0.00 1.47
1243 4252 4.104102 TGGTCCAGAAACTTCCAACAGTAT 59.896 41.667 0.00 0.00 0.00 2.12
1244 4253 3.456644 TGGTCCAGAAACTTCCAACAGTA 59.543 43.478 0.00 0.00 0.00 2.74
1245 4254 2.241176 TGGTCCAGAAACTTCCAACAGT 59.759 45.455 0.00 0.00 0.00 3.55
1246 4255 2.618709 GTGGTCCAGAAACTTCCAACAG 59.381 50.000 0.00 0.00 0.00 3.16
1247 4256 2.241176 AGTGGTCCAGAAACTTCCAACA 59.759 45.455 0.00 0.00 0.00 3.33
1248 4257 2.618709 CAGTGGTCCAGAAACTTCCAAC 59.381 50.000 0.00 0.00 0.00 3.77
1249 4258 2.241176 ACAGTGGTCCAGAAACTTCCAA 59.759 45.455 0.00 0.00 0.00 3.53
1250 4259 1.843851 ACAGTGGTCCAGAAACTTCCA 59.156 47.619 0.00 0.00 0.00 3.53
1251 4260 2.640316 ACAGTGGTCCAGAAACTTCC 57.360 50.000 0.00 0.00 0.00 3.46
1252 4261 4.448210 TGTTACAGTGGTCCAGAAACTTC 58.552 43.478 0.00 0.00 0.00 3.01
1253 4262 4.497291 TGTTACAGTGGTCCAGAAACTT 57.503 40.909 0.00 0.00 0.00 2.66
1254 4263 4.706842 ATGTTACAGTGGTCCAGAAACT 57.293 40.909 0.00 0.00 0.00 2.66
1255 4264 5.767816 AAATGTTACAGTGGTCCAGAAAC 57.232 39.130 0.00 0.00 0.00 2.78
1256 4265 6.017770 CGTAAAATGTTACAGTGGTCCAGAAA 60.018 38.462 6.60 0.00 39.78 2.52
1257 4266 5.467399 CGTAAAATGTTACAGTGGTCCAGAA 59.533 40.000 6.60 0.00 39.78 3.02
1258 4267 4.992319 CGTAAAATGTTACAGTGGTCCAGA 59.008 41.667 6.60 0.00 39.78 3.86
1259 4268 4.153475 CCGTAAAATGTTACAGTGGTCCAG 59.847 45.833 6.60 0.00 39.78 3.86
1260 4269 4.066490 CCGTAAAATGTTACAGTGGTCCA 58.934 43.478 6.60 0.00 39.78 4.02
1261 4270 3.437741 CCCGTAAAATGTTACAGTGGTCC 59.562 47.826 6.60 0.00 39.78 4.46
1262 4271 3.120095 GCCCGTAAAATGTTACAGTGGTC 60.120 47.826 6.60 0.00 39.78 4.02
1263 4272 2.815503 GCCCGTAAAATGTTACAGTGGT 59.184 45.455 6.60 0.00 39.78 4.16
1264 4273 2.162809 GGCCCGTAAAATGTTACAGTGG 59.837 50.000 6.60 4.51 39.78 4.00
1265 4274 2.159626 CGGCCCGTAAAATGTTACAGTG 60.160 50.000 6.60 0.00 39.78 3.66
1266 4275 2.078392 CGGCCCGTAAAATGTTACAGT 58.922 47.619 6.60 0.00 39.78 3.55
1267 4276 1.399089 CCGGCCCGTAAAATGTTACAG 59.601 52.381 0.85 0.00 39.78 2.74
1268 4277 1.451067 CCGGCCCGTAAAATGTTACA 58.549 50.000 0.85 0.00 39.78 2.41
1269 4278 0.734309 CCCGGCCCGTAAAATGTTAC 59.266 55.000 0.85 0.00 36.94 2.50
1270 4279 0.394080 CCCCGGCCCGTAAAATGTTA 60.394 55.000 0.85 0.00 0.00 2.41
1271 4280 1.679641 CCCCGGCCCGTAAAATGTT 60.680 57.895 0.85 0.00 0.00 2.71
1272 4281 2.044749 CCCCGGCCCGTAAAATGT 60.045 61.111 0.85 0.00 0.00 2.71
1273 4282 3.523668 GCCCCGGCCCGTAAAATG 61.524 66.667 0.85 0.00 34.56 2.32
1280 4289 3.697747 TATAATCGCCCCGGCCCG 61.698 66.667 0.00 0.00 37.98 6.13
1281 4290 2.046604 GTATAATCGCCCCGGCCC 60.047 66.667 0.00 0.00 37.98 5.80
1282 4291 1.375523 CTGTATAATCGCCCCGGCC 60.376 63.158 0.00 0.00 37.98 6.13
1283 4292 0.389948 CTCTGTATAATCGCCCCGGC 60.390 60.000 0.00 0.00 37.85 6.13
1284 4293 0.966920 ACTCTGTATAATCGCCCCGG 59.033 55.000 0.00 0.00 0.00 5.73
1285 4294 1.887198 AGACTCTGTATAATCGCCCCG 59.113 52.381 0.00 0.00 0.00 5.73
1286 4295 5.394333 GGATTAGACTCTGTATAATCGCCCC 60.394 48.000 14.70 3.35 43.44 5.80
1287 4296 5.185249 TGGATTAGACTCTGTATAATCGCCC 59.815 44.000 14.70 6.65 43.44 6.13
1288 4297 6.268825 TGGATTAGACTCTGTATAATCGCC 57.731 41.667 14.70 7.16 43.44 5.54
1289 4298 8.589335 TTTTGGATTAGACTCTGTATAATCGC 57.411 34.615 14.70 10.39 43.44 4.58
1315 4324 8.836268 TGACTATACGTATTTGACCTGTTTTT 57.164 30.769 14.33 0.00 0.00 1.94
1316 4325 9.095065 GATGACTATACGTATTTGACCTGTTTT 57.905 33.333 14.33 0.00 0.00 2.43
1317 4326 7.434307 CGATGACTATACGTATTTGACCTGTTT 59.566 37.037 14.33 0.00 0.00 2.83
1318 4327 6.916387 CGATGACTATACGTATTTGACCTGTT 59.084 38.462 14.33 0.00 0.00 3.16
1319 4328 6.261603 TCGATGACTATACGTATTTGACCTGT 59.738 38.462 14.33 2.28 0.00 4.00
1320 4329 6.665465 TCGATGACTATACGTATTTGACCTG 58.335 40.000 14.33 0.41 0.00 4.00
1321 4330 6.872628 TCGATGACTATACGTATTTGACCT 57.127 37.500 14.33 1.51 0.00 3.85
1322 4331 7.919313 TTTCGATGACTATACGTATTTGACC 57.081 36.000 14.33 6.08 0.00 4.02
1330 4339 8.746530 ACCCATATAATTTCGATGACTATACGT 58.253 33.333 0.00 0.00 0.00 3.57
1331 4340 9.234384 GACCCATATAATTTCGATGACTATACG 57.766 37.037 0.00 0.00 0.00 3.06
1332 4341 9.234384 CGACCCATATAATTTCGATGACTATAC 57.766 37.037 0.00 0.00 0.00 1.47
1333 4342 8.410912 CCGACCCATATAATTTCGATGACTATA 58.589 37.037 0.00 0.00 0.00 1.31
1334 4343 7.265673 CCGACCCATATAATTTCGATGACTAT 58.734 38.462 0.00 0.00 0.00 2.12
1335 4344 6.350696 CCCGACCCATATAATTTCGATGACTA 60.351 42.308 0.00 0.00 0.00 2.59
1336 4345 5.479306 CCGACCCATATAATTTCGATGACT 58.521 41.667 0.00 0.00 0.00 3.41
1337 4346 4.630069 CCCGACCCATATAATTTCGATGAC 59.370 45.833 0.00 0.00 0.00 3.06
1338 4347 4.827692 CCCGACCCATATAATTTCGATGA 58.172 43.478 0.00 0.00 0.00 2.92
1339 4348 3.374058 GCCCGACCCATATAATTTCGATG 59.626 47.826 0.00 0.00 0.00 3.84
1340 4349 3.606687 GCCCGACCCATATAATTTCGAT 58.393 45.455 0.00 0.00 0.00 3.59
1341 4350 2.610976 CGCCCGACCCATATAATTTCGA 60.611 50.000 0.00 0.00 0.00 3.71
1342 4351 1.730064 CGCCCGACCCATATAATTTCG 59.270 52.381 0.00 0.00 0.00 3.46
1343 4352 1.467342 GCGCCCGACCCATATAATTTC 59.533 52.381 0.00 0.00 0.00 2.17
1344 4353 1.073284 AGCGCCCGACCCATATAATTT 59.927 47.619 2.29 0.00 0.00 1.82
1345 4354 0.690762 AGCGCCCGACCCATATAATT 59.309 50.000 2.29 0.00 0.00 1.40
1346 4355 0.690762 AAGCGCCCGACCCATATAAT 59.309 50.000 2.29 0.00 0.00 1.28
1347 4356 0.470766 AAAGCGCCCGACCCATATAA 59.529 50.000 2.29 0.00 0.00 0.98
1348 4357 0.470766 AAAAGCGCCCGACCCATATA 59.529 50.000 2.29 0.00 0.00 0.86
1349 4358 0.470766 TAAAAGCGCCCGACCCATAT 59.529 50.000 2.29 0.00 0.00 1.78
1350 4359 0.462403 GTAAAAGCGCCCGACCCATA 60.462 55.000 2.29 0.00 0.00 2.74
1351 4360 1.747745 GTAAAAGCGCCCGACCCAT 60.748 57.895 2.29 0.00 0.00 4.00
1352 4361 2.358984 GTAAAAGCGCCCGACCCA 60.359 61.111 2.29 0.00 0.00 4.51
1353 4362 3.493440 CGTAAAAGCGCCCGACCC 61.493 66.667 2.29 0.00 0.00 4.46
1354 4363 3.493440 CCGTAAAAGCGCCCGACC 61.493 66.667 2.29 0.00 0.00 4.79
1355 4364 2.739671 ACCGTAAAAGCGCCCGAC 60.740 61.111 2.29 0.00 0.00 4.79
1356 4365 2.739287 CACCGTAAAAGCGCCCGA 60.739 61.111 2.29 0.00 0.00 5.14
1357 4366 3.018840 GACACCGTAAAAGCGCCCG 62.019 63.158 2.29 0.00 0.00 6.13
1358 4367 1.670083 AGACACCGTAAAAGCGCCC 60.670 57.895 2.29 0.00 0.00 6.13
1359 4368 1.495951 CAGACACCGTAAAAGCGCC 59.504 57.895 2.29 0.00 0.00 6.53
1360 4369 1.154469 GCAGACACCGTAAAAGCGC 60.154 57.895 0.00 0.00 0.00 5.92
1361 4370 1.654105 CTAGCAGACACCGTAAAAGCG 59.346 52.381 0.00 0.00 0.00 4.68
1362 4371 2.924290 CTCTAGCAGACACCGTAAAAGC 59.076 50.000 0.00 0.00 0.00 3.51
1363 4372 4.436242 TCTCTAGCAGACACCGTAAAAG 57.564 45.455 0.00 0.00 0.00 2.27
1364 4373 4.744570 CATCTCTAGCAGACACCGTAAAA 58.255 43.478 0.00 0.00 32.26 1.52
1365 4374 3.428999 GCATCTCTAGCAGACACCGTAAA 60.429 47.826 0.00 0.00 32.26 2.01
1366 4375 2.099263 GCATCTCTAGCAGACACCGTAA 59.901 50.000 0.00 0.00 32.26 3.18
1367 4376 1.676529 GCATCTCTAGCAGACACCGTA 59.323 52.381 0.00 0.00 32.26 4.02
1368 4377 0.457851 GCATCTCTAGCAGACACCGT 59.542 55.000 0.00 0.00 32.26 4.83
1369 4378 0.743688 AGCATCTCTAGCAGACACCG 59.256 55.000 0.00 0.00 32.26 4.94
1370 4379 2.507339 GAGCATCTCTAGCAGACACC 57.493 55.000 0.00 0.00 32.26 4.16
1383 4392 2.663188 CGCCGGCCTTAGAGCATC 60.663 66.667 23.46 0.00 0.00 3.91
1384 4393 3.447025 GACGCCGGCCTTAGAGCAT 62.447 63.158 23.46 0.00 0.00 3.79
1385 4394 4.143333 GACGCCGGCCTTAGAGCA 62.143 66.667 23.46 0.00 0.00 4.26
1386 4395 3.659089 TTGACGCCGGCCTTAGAGC 62.659 63.158 23.46 5.37 0.00 4.09
1387 4396 1.810030 GTTGACGCCGGCCTTAGAG 60.810 63.158 23.46 8.22 0.00 2.43
1388 4397 1.823169 AAGTTGACGCCGGCCTTAGA 61.823 55.000 23.46 0.00 0.00 2.10
1389 4398 1.359459 GAAGTTGACGCCGGCCTTAG 61.359 60.000 23.46 9.53 0.00 2.18
1400 4409 1.882623 CAAAGCCCAGGAGAAGTTGAC 59.117 52.381 0.00 0.00 0.00 3.18
1426 4435 3.406764 AGGTCAAGACAAGAAGATGCAC 58.593 45.455 2.29 0.00 0.00 4.57
1457 4472 2.676265 GGTAGGGGTGGGCACGATT 61.676 63.158 0.00 0.00 0.00 3.34
1520 4535 2.405357 GTCATAATTCGGATCGAGCGTG 59.595 50.000 0.00 0.00 37.14 5.34
1538 4553 1.719709 CGACTCATCGCCGTAGTCA 59.280 57.895 14.05 0.00 42.43 3.41
1635 4650 1.079057 GAAGAAGAGGGACCACGGC 60.079 63.158 0.00 0.00 0.00 5.68
1799 4814 4.467084 TGGCGGCGATCTTGTCCC 62.467 66.667 12.98 0.00 0.00 4.46
1923 4938 0.029700 TGAAGAAGAACGCGTCGTCA 59.970 50.000 14.44 11.36 39.99 4.35
2179 5194 4.384647 GCCATAGGAGATCTTCTTGGTGTT 60.385 45.833 22.83 0.00 0.00 3.32
2496 5512 2.052237 CAACCACTCGCGTTGTGC 60.052 61.111 22.44 0.00 36.64 4.57
2578 5594 3.512680 AGCTGTACGTCTTATGCTTGAC 58.487 45.455 0.00 0.00 0.00 3.18
2704 5726 7.224753 CACATGCTAACTTTGATACTCCGTTAT 59.775 37.037 0.00 0.00 0.00 1.89
2705 5727 6.533723 CACATGCTAACTTTGATACTCCGTTA 59.466 38.462 0.00 0.00 0.00 3.18
2706 5728 5.351465 CACATGCTAACTTTGATACTCCGTT 59.649 40.000 0.00 0.00 0.00 4.44
2707 5729 4.870426 CACATGCTAACTTTGATACTCCGT 59.130 41.667 0.00 0.00 0.00 4.69
2708 5730 4.870426 ACACATGCTAACTTTGATACTCCG 59.130 41.667 0.00 0.00 0.00 4.63
2709 5731 6.546395 CAACACATGCTAACTTTGATACTCC 58.454 40.000 0.00 0.00 0.00 3.85
2731 5753 5.934625 ACTTTACAACAACACAAAATGGCAA 59.065 32.000 0.00 0.00 0.00 4.52
2774 5796 7.333174 ACCACTTGAAAACCAACTTACAAATTG 59.667 33.333 0.00 0.00 0.00 2.32
2856 5880 5.930135 ACAGAAACAGTGAAACATACTCCT 58.070 37.500 0.00 0.00 41.43 3.69
2857 5881 7.624344 GCATACAGAAACAGTGAAACATACTCC 60.624 40.741 0.00 0.00 41.43 3.85
2858 5882 7.095229 TGCATACAGAAACAGTGAAACATACTC 60.095 37.037 0.00 0.00 41.43 2.59
2915 5939 5.461526 GTTGAGGCCTTGACAAGTAATTTC 58.538 41.667 6.77 5.29 0.00 2.17
2920 5944 1.270625 CCGTTGAGGCCTTGACAAGTA 60.271 52.381 6.77 0.00 0.00 2.24
3067 6102 1.583451 GTGCATACCATGTTGCGCG 60.583 57.895 0.00 0.00 41.80 6.86
3077 6112 2.094390 TCTACACCGTGAAGTGCATACC 60.094 50.000 5.28 0.00 41.67 2.73
3085 6120 2.349580 CACATGCATCTACACCGTGAAG 59.650 50.000 5.28 0.00 31.19 3.02
3089 6124 2.289382 TGAACACATGCATCTACACCGT 60.289 45.455 0.00 0.00 0.00 4.83
3107 6143 5.352846 TCCAAATCGAGCAATACGAAATGAA 59.647 36.000 0.00 0.00 42.80 2.57
3109 6145 5.155509 TCCAAATCGAGCAATACGAAATG 57.844 39.130 0.00 0.00 42.80 2.32
3119 6155 2.754472 CCGACATATCCAAATCGAGCA 58.246 47.619 0.00 0.00 36.70 4.26
3231 6267 3.181967 CTTGGTTCGGAGCTCGCG 61.182 66.667 15.77 15.77 39.05 5.87
3264 6300 5.256474 TCTCCAAAATCTCCAGTGAAATCC 58.744 41.667 0.00 0.00 0.00 3.01
3339 6375 0.917259 CAAAGGAGCGAATCGAGTCG 59.083 55.000 29.06 29.06 43.98 4.18
3380 6416 2.232941 AGGCCGACACTAGAAATCGAAA 59.767 45.455 13.92 0.00 38.10 3.46
3387 6423 5.298777 GTCTATAGAAAGGCCGACACTAGAA 59.701 44.000 3.40 0.00 0.00 2.10
3393 6429 2.617308 CGAGTCTATAGAAAGGCCGACA 59.383 50.000 3.40 0.00 0.00 4.35
3555 6591 6.053650 GCCGTACTTCCCATAGTATTTTCTT 58.946 40.000 0.00 0.00 33.49 2.52
3575 6611 0.610232 ACAGTTCTAGGTACGGCCGT 60.610 55.000 36.01 36.01 43.70 5.68
3576 6612 1.064654 GTACAGTTCTAGGTACGGCCG 59.935 57.143 26.86 26.86 43.70 6.13
3614 6650 5.665916 TCACTGATCACATGAAGAAGCTA 57.334 39.130 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.