Multiple sequence alignment - TraesCS3A01G307500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G307500 chr3A 100.000 3812 0 0 1 3812 545884885 545888696 0.000000e+00 7040.0
1 TraesCS3A01G307500 chr3A 94.222 225 13 0 131 355 684741810 684741586 1.010000e-90 344.0
2 TraesCS3A01G307500 chr3A 91.892 148 11 1 348 494 634578545 634578398 4.990000e-49 206.0
3 TraesCS3A01G307500 chr3A 90.476 147 12 2 352 497 523610159 523610014 3.890000e-45 193.0
4 TraesCS3A01G307500 chr3A 95.946 74 3 0 794 867 545885604 545885677 1.860000e-23 121.0
5 TraesCS3A01G307500 chr3A 95.946 74 3 0 720 793 545885678 545885751 1.860000e-23 121.0
6 TraesCS3A01G307500 chr3A 93.182 44 2 1 89 132 691202504 691202546 3.180000e-06 63.9
7 TraesCS3A01G307500 chr3D 98.223 2701 38 6 1115 3812 92211876 92214569 0.000000e+00 4713.0
8 TraesCS3A01G307500 chr3D 95.862 290 11 1 794 1083 92211592 92211880 5.770000e-128 468.0
9 TraesCS3A01G307500 chr3D 89.369 301 21 5 493 793 92211376 92211665 6.020000e-98 368.0
10 TraesCS3A01G307500 chr3D 90.541 148 13 1 348 494 495167455 495167308 1.080000e-45 195.0
11 TraesCS3A01G307500 chr3D 89.474 152 13 2 348 496 491992218 491992067 5.030000e-44 189.0
12 TraesCS3A01G307500 chr3D 84.247 146 9 6 1 132 495167599 495167454 3.090000e-26 130.0
13 TraesCS3A01G307500 chr7B 89.431 2952 268 19 884 3812 483797724 483794794 0.000000e+00 3683.0
14 TraesCS3A01G307500 chr7B 88.260 954 105 5 1817 2765 483789590 483788639 0.000000e+00 1134.0
15 TraesCS3A01G307500 chr7B 87.968 507 59 1 981 1485 483790532 483790026 7.050000e-167 597.0
16 TraesCS3A01G307500 chr7B 85.867 375 53 0 1528 1902 483790023 483789649 2.130000e-107 399.0
17 TraesCS3A01G307500 chr7A 88.866 2856 285 19 984 3812 538769665 538772514 0.000000e+00 3482.0
18 TraesCS3A01G307500 chr7A 94.977 219 11 0 131 349 129261361 129261579 1.010000e-90 344.0
19 TraesCS3A01G307500 chr7A 82.192 146 11 6 1 132 65117674 65117530 1.120000e-20 111.0
20 TraesCS3A01G307500 chr7D 88.194 2956 300 26 884 3812 461260349 461257416 0.000000e+00 3480.0
21 TraesCS3A01G307500 chr7D 87.973 2245 236 18 1594 3812 461249926 461247690 0.000000e+00 2619.0
22 TraesCS3A01G307500 chr7D 87.500 432 44 2 981 1412 461250930 461250509 1.230000e-134 490.0
23 TraesCS3A01G307500 chr7D 86.538 260 35 0 1478 1737 461250185 461249926 1.730000e-73 287.0
24 TraesCS3A01G307500 chr6A 87.418 2758 301 27 1086 3812 29613516 29616258 0.000000e+00 3129.0
25 TraesCS3A01G307500 chr6A 97.273 220 6 0 130 349 459511750 459511969 1.290000e-99 374.0
26 TraesCS3A01G307500 chr6A 95.928 221 9 0 129 349 487689908 487690128 3.620000e-95 359.0
27 TraesCS3A01G307500 chr6A 94.977 219 11 0 131 349 487689826 487689608 1.010000e-90 344.0
28 TraesCS3A01G307500 chr5A 96.774 217 7 0 134 350 590580622 590580838 2.800000e-96 363.0
29 TraesCS3A01G307500 chr5A 94.619 223 12 0 127 349 483329621 483329843 2.820000e-91 346.0
30 TraesCS3A01G307500 chr4A 94.977 219 11 0 131 349 640236064 640235846 1.010000e-90 344.0
31 TraesCS3A01G307500 chr4A 80.137 146 11 9 2 132 668115827 668115685 4.050000e-15 93.5
32 TraesCS3A01G307500 chr2A 91.701 241 18 1 131 369 27936341 27936581 2.190000e-87 333.0
33 TraesCS3A01G307500 chr1D 92.715 151 10 1 348 497 37440767 37440917 2.310000e-52 217.0
34 TraesCS3A01G307500 chr5B 91.447 152 11 2 348 497 338934343 338934494 1.390000e-49 207.0
35 TraesCS3A01G307500 chr5B 90.541 148 13 1 348 494 287429181 287429328 1.080000e-45 195.0
36 TraesCS3A01G307500 chr5D 91.216 148 12 1 348 494 255083830 255083683 2.320000e-47 200.0
37 TraesCS3A01G307500 chr5D 89.474 152 13 2 348 496 385950224 385950375 5.030000e-44 189.0
38 TraesCS3A01G307500 chr5D 81.507 146 12 4 1 132 385950081 385950225 5.210000e-19 106.0
39 TraesCS3A01G307500 chr5D 78.146 151 20 9 1 139 554752184 554752035 2.440000e-12 84.2
40 TraesCS3A01G307500 chr4D 84.397 141 11 8 1 130 375118336 375118476 1.110000e-25 128.0
41 TraesCS3A01G307500 chr4D 91.026 78 7 0 1 78 40116639 40116716 5.210000e-19 106.0
42 TraesCS3A01G307500 chr6D 83.916 143 10 3 3 132 347324655 347324513 1.440000e-24 124.0
43 TraesCS3A01G307500 chr3B 81.618 136 10 5 12 132 668111446 668111581 8.710000e-17 99.0
44 TraesCS3A01G307500 chr3B 91.837 49 2 2 84 132 736945240 736945286 2.460000e-07 67.6
45 TraesCS3A01G307500 chr3B 95.122 41 1 1 92 132 736947790 736947751 3.180000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G307500 chr3A 545884885 545888696 3811 False 2427.333333 7040 97.297333 1 3812 3 chr3A.!!$F2 3811
1 TraesCS3A01G307500 chr3D 92211376 92214569 3193 False 1849.666667 4713 94.484667 493 3812 3 chr3D.!!$F1 3319
2 TraesCS3A01G307500 chr7B 483794794 483797724 2930 True 3683.000000 3683 89.431000 884 3812 1 chr7B.!!$R1 2928
3 TraesCS3A01G307500 chr7B 483788639 483790532 1893 True 710.000000 1134 87.365000 981 2765 3 chr7B.!!$R2 1784
4 TraesCS3A01G307500 chr7A 538769665 538772514 2849 False 3482.000000 3482 88.866000 984 3812 1 chr7A.!!$F2 2828
5 TraesCS3A01G307500 chr7D 461257416 461260349 2933 True 3480.000000 3480 88.194000 884 3812 1 chr7D.!!$R1 2928
6 TraesCS3A01G307500 chr7D 461247690 461250930 3240 True 1132.000000 2619 87.337000 981 3812 3 chr7D.!!$R2 2831
7 TraesCS3A01G307500 chr6A 29613516 29616258 2742 False 3129.000000 3129 87.418000 1086 3812 1 chr6A.!!$F1 2726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.109412 GCGTACGTGTGCTCTTAGGT 60.109 55.000 17.90 0.0 0.00 3.08 F
799 800 0.383949 GCAACTTGCCTCGTTTGGAA 59.616 50.000 1.95 0.0 37.42 3.53 F
1100 1101 0.250901 ACCTTGTCCGCTGCTGAAAT 60.251 50.000 0.00 0.0 0.00 2.17 F
1102 1103 1.270550 CCTTGTCCGCTGCTGAAATTT 59.729 47.619 0.00 0.0 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1100 1101 1.034838 AGTGGCGCTTGTTGTGGAAA 61.035 50.000 7.64 0.00 0.00 3.13 R
1602 1907 2.634453 CAGGGCTTTCAGGTTTCCAATT 59.366 45.455 0.00 0.00 0.00 2.32 R
2806 3402 3.135167 TGGAGAAAACGTCCCAGTTAACT 59.865 43.478 1.12 1.12 33.41 2.24 R
2872 3494 5.048434 GGAATTAAGCCAGATATCCTGTTGC 60.048 44.000 0.00 0.00 41.33 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.130307 CGAATAAAATGGCTTCAAAATTAGGG 57.870 34.615 0.00 0.00 0.00 3.53
26 27 7.978975 CGAATAAAATGGCTTCAAAATTAGGGA 59.021 33.333 0.00 0.00 0.00 4.20
27 28 9.317936 GAATAAAATGGCTTCAAAATTAGGGAG 57.682 33.333 0.00 0.00 0.00 4.30
28 29 6.686484 AAAATGGCTTCAAAATTAGGGAGT 57.314 33.333 0.00 0.00 0.00 3.85
29 30 7.790782 AAAATGGCTTCAAAATTAGGGAGTA 57.209 32.000 0.00 0.00 0.00 2.59
30 31 7.978099 AAATGGCTTCAAAATTAGGGAGTAT 57.022 32.000 0.00 0.00 0.00 2.12
31 32 6.966534 ATGGCTTCAAAATTAGGGAGTATG 57.033 37.500 0.00 0.00 0.00 2.39
32 33 6.073447 TGGCTTCAAAATTAGGGAGTATGA 57.927 37.500 0.00 0.00 0.00 2.15
33 34 6.672593 TGGCTTCAAAATTAGGGAGTATGAT 58.327 36.000 0.00 0.00 0.00 2.45
34 35 6.547141 TGGCTTCAAAATTAGGGAGTATGATG 59.453 38.462 0.00 0.00 0.00 3.07
35 36 6.772716 GGCTTCAAAATTAGGGAGTATGATGA 59.227 38.462 0.00 0.00 0.00 2.92
36 37 7.285401 GGCTTCAAAATTAGGGAGTATGATGAA 59.715 37.037 0.00 0.00 0.00 2.57
37 38 8.854117 GCTTCAAAATTAGGGAGTATGATGAAT 58.146 33.333 0.00 0.00 0.00 2.57
77 78 8.960591 TGAGAGATCCTTGAAAAATTATTGACC 58.039 33.333 0.00 0.00 0.00 4.02
78 79 8.298729 AGAGATCCTTGAAAAATTATTGACCC 57.701 34.615 0.00 0.00 0.00 4.46
79 80 7.895429 AGAGATCCTTGAAAAATTATTGACCCA 59.105 33.333 0.00 0.00 0.00 4.51
80 81 8.613922 AGATCCTTGAAAAATTATTGACCCAT 57.386 30.769 0.00 0.00 0.00 4.00
81 82 8.480501 AGATCCTTGAAAAATTATTGACCCATG 58.519 33.333 0.00 0.00 0.00 3.66
82 83 7.789202 TCCTTGAAAAATTATTGACCCATGA 57.211 32.000 0.00 0.00 0.00 3.07
83 84 7.610865 TCCTTGAAAAATTATTGACCCATGAC 58.389 34.615 0.00 0.00 0.00 3.06
84 85 6.818142 CCTTGAAAAATTATTGACCCATGACC 59.182 38.462 0.00 0.00 0.00 4.02
85 86 7.310609 CCTTGAAAAATTATTGACCCATGACCT 60.311 37.037 0.00 0.00 0.00 3.85
86 87 8.657387 TTGAAAAATTATTGACCCATGACCTA 57.343 30.769 0.00 0.00 0.00 3.08
87 88 8.292444 TGAAAAATTATTGACCCATGACCTAG 57.708 34.615 0.00 0.00 0.00 3.02
88 89 7.893302 TGAAAAATTATTGACCCATGACCTAGT 59.107 33.333 0.00 0.00 0.00 2.57
89 90 8.664669 AAAAATTATTGACCCATGACCTAGTT 57.335 30.769 0.00 0.00 0.00 2.24
90 91 7.881775 AAATTATTGACCCATGACCTAGTTC 57.118 36.000 0.00 0.00 0.00 3.01
91 92 3.933861 ATTGACCCATGACCTAGTTCC 57.066 47.619 0.00 0.00 0.00 3.62
92 93 2.335681 TGACCCATGACCTAGTTCCA 57.664 50.000 0.00 0.00 0.00 3.53
93 94 2.626785 TGACCCATGACCTAGTTCCAA 58.373 47.619 0.00 0.00 0.00 3.53
94 95 3.189606 TGACCCATGACCTAGTTCCAAT 58.810 45.455 0.00 0.00 0.00 3.16
95 96 3.591527 TGACCCATGACCTAGTTCCAATT 59.408 43.478 0.00 0.00 0.00 2.32
96 97 4.785914 TGACCCATGACCTAGTTCCAATTA 59.214 41.667 0.00 0.00 0.00 1.40
97 98 5.104527 TGACCCATGACCTAGTTCCAATTAG 60.105 44.000 0.00 0.00 0.00 1.73
98 99 5.036916 ACCCATGACCTAGTTCCAATTAGA 58.963 41.667 0.00 0.00 0.00 2.10
99 100 5.491078 ACCCATGACCTAGTTCCAATTAGAA 59.509 40.000 0.00 0.00 0.00 2.10
100 101 6.058183 CCCATGACCTAGTTCCAATTAGAAG 58.942 44.000 0.00 0.00 0.00 2.85
101 102 6.126768 CCCATGACCTAGTTCCAATTAGAAGA 60.127 42.308 0.00 0.00 0.00 2.87
102 103 6.763610 CCATGACCTAGTTCCAATTAGAAGAC 59.236 42.308 0.00 0.00 0.00 3.01
103 104 6.295719 TGACCTAGTTCCAATTAGAAGACC 57.704 41.667 0.00 0.00 0.00 3.85
104 105 6.023603 TGACCTAGTTCCAATTAGAAGACCT 58.976 40.000 0.00 0.00 0.00 3.85
105 106 6.154706 TGACCTAGTTCCAATTAGAAGACCTC 59.845 42.308 0.00 0.00 0.00 3.85
106 107 6.023603 ACCTAGTTCCAATTAGAAGACCTCA 58.976 40.000 0.00 0.00 0.00 3.86
107 108 6.500751 ACCTAGTTCCAATTAGAAGACCTCAA 59.499 38.462 0.00 0.00 0.00 3.02
108 109 7.182930 ACCTAGTTCCAATTAGAAGACCTCAAT 59.817 37.037 0.00 0.00 0.00 2.57
109 110 8.049721 CCTAGTTCCAATTAGAAGACCTCAATT 58.950 37.037 0.00 0.00 0.00 2.32
112 113 9.981460 AGTTCCAATTAGAAGACCTCAATTAAT 57.019 29.630 0.00 0.00 0.00 1.40
115 116 9.753674 TCCAATTAGAAGACCTCAATTAATTGT 57.246 29.630 23.95 8.54 37.04 2.71
116 117 9.793252 CCAATTAGAAGACCTCAATTAATTGTG 57.207 33.333 23.95 21.33 37.04 3.33
138 139 9.498176 TTGTGAGGACTTAAAAATTACTACCTC 57.502 33.333 0.00 0.00 40.89 3.85
139 140 8.877195 TGTGAGGACTTAAAAATTACTACCTCT 58.123 33.333 0.00 0.00 41.03 3.69
140 141 9.368674 GTGAGGACTTAAAAATTACTACCTCTC 57.631 37.037 0.00 0.00 41.03 3.20
141 142 9.322769 TGAGGACTTAAAAATTACTACCTCTCT 57.677 33.333 0.00 0.00 41.03 3.10
142 143 9.806203 GAGGACTTAAAAATTACTACCTCTCTC 57.194 37.037 0.00 0.00 38.49 3.20
143 144 9.549984 AGGACTTAAAAATTACTACCTCTCTCT 57.450 33.333 0.00 0.00 0.00 3.10
156 157 7.005902 ACTACCTCTCTCTTAGTTTATAGGGC 58.994 42.308 0.00 0.00 0.00 5.19
157 158 4.828387 ACCTCTCTCTTAGTTTATAGGGCG 59.172 45.833 0.00 0.00 0.00 6.13
158 159 4.828387 CCTCTCTCTTAGTTTATAGGGCGT 59.172 45.833 0.00 0.00 0.00 5.68
159 160 6.002704 CCTCTCTCTTAGTTTATAGGGCGTA 58.997 44.000 0.00 0.00 0.00 4.42
160 161 6.072563 CCTCTCTCTTAGTTTATAGGGCGTAC 60.073 46.154 0.00 0.00 0.00 3.67
161 162 5.468072 TCTCTCTTAGTTTATAGGGCGTACG 59.532 44.000 11.84 11.84 0.00 3.67
162 163 5.126067 TCTCTTAGTTTATAGGGCGTACGT 58.874 41.667 17.90 0.00 0.00 3.57
163 164 5.008019 TCTCTTAGTTTATAGGGCGTACGTG 59.992 44.000 17.90 0.00 0.00 4.49
164 165 4.640201 TCTTAGTTTATAGGGCGTACGTGT 59.360 41.667 17.90 4.29 0.00 4.49
165 166 3.155093 AGTTTATAGGGCGTACGTGTG 57.845 47.619 17.90 0.00 0.00 3.82
166 167 1.589779 GTTTATAGGGCGTACGTGTGC 59.410 52.381 17.90 0.95 0.00 4.57
167 168 1.105457 TTATAGGGCGTACGTGTGCT 58.895 50.000 17.90 2.24 0.00 4.40
168 169 0.664761 TATAGGGCGTACGTGTGCTC 59.335 55.000 17.90 9.38 0.00 4.26
169 170 1.035932 ATAGGGCGTACGTGTGCTCT 61.036 55.000 17.90 18.48 45.69 4.09
170 171 1.246056 TAGGGCGTACGTGTGCTCTT 61.246 55.000 19.44 6.31 39.37 2.85
171 172 1.213537 GGGCGTACGTGTGCTCTTA 59.786 57.895 17.90 0.00 0.00 2.10
172 173 0.801067 GGGCGTACGTGTGCTCTTAG 60.801 60.000 17.90 0.00 0.00 2.18
173 174 0.801067 GGCGTACGTGTGCTCTTAGG 60.801 60.000 17.90 0.00 0.00 2.69
174 175 0.109412 GCGTACGTGTGCTCTTAGGT 60.109 55.000 17.90 0.00 0.00 3.08
175 176 1.892468 CGTACGTGTGCTCTTAGGTC 58.108 55.000 7.22 0.00 0.00 3.85
176 177 1.789410 CGTACGTGTGCTCTTAGGTCG 60.789 57.143 7.22 0.00 0.00 4.79
177 178 1.198637 GTACGTGTGCTCTTAGGTCGT 59.801 52.381 0.00 0.00 0.00 4.34
178 179 0.672342 ACGTGTGCTCTTAGGTCGTT 59.328 50.000 0.00 0.00 0.00 3.85
179 180 1.881973 ACGTGTGCTCTTAGGTCGTTA 59.118 47.619 0.00 0.00 0.00 3.18
180 181 2.294233 ACGTGTGCTCTTAGGTCGTTAA 59.706 45.455 0.00 0.00 0.00 2.01
181 182 3.057033 ACGTGTGCTCTTAGGTCGTTAAT 60.057 43.478 0.00 0.00 0.00 1.40
182 183 3.924686 CGTGTGCTCTTAGGTCGTTAATT 59.075 43.478 0.00 0.00 0.00 1.40
183 184 4.387862 CGTGTGCTCTTAGGTCGTTAATTT 59.612 41.667 0.00 0.00 0.00 1.82
184 185 5.618561 GTGTGCTCTTAGGTCGTTAATTTG 58.381 41.667 0.00 0.00 0.00 2.32
185 186 5.407387 GTGTGCTCTTAGGTCGTTAATTTGA 59.593 40.000 0.00 0.00 0.00 2.69
186 187 5.407387 TGTGCTCTTAGGTCGTTAATTTGAC 59.593 40.000 0.00 0.00 0.00 3.18
198 199 8.031848 GTCGTTAATTTGACCAACCTAATACA 57.968 34.615 0.00 0.00 0.00 2.29
199 200 8.505625 GTCGTTAATTTGACCAACCTAATACAA 58.494 33.333 0.00 0.00 0.00 2.41
200 201 8.723311 TCGTTAATTTGACCAACCTAATACAAG 58.277 33.333 0.00 0.00 0.00 3.16
201 202 8.508875 CGTTAATTTGACCAACCTAATACAAGT 58.491 33.333 0.00 0.00 0.00 3.16
202 203 9.836076 GTTAATTTGACCAACCTAATACAAGTC 57.164 33.333 0.00 0.00 0.00 3.01
203 204 9.575868 TTAATTTGACCAACCTAATACAAGTCA 57.424 29.630 0.00 0.00 0.00 3.41
204 205 8.650143 AATTTGACCAACCTAATACAAGTCAT 57.350 30.769 0.00 0.00 33.21 3.06
205 206 9.747898 AATTTGACCAACCTAATACAAGTCATA 57.252 29.630 0.00 0.00 33.21 2.15
206 207 9.920946 ATTTGACCAACCTAATACAAGTCATAT 57.079 29.630 0.00 0.00 33.21 1.78
255 256 9.750125 AAACTTCAGATGTTCTATTTTCAAACC 57.250 29.630 2.28 0.00 0.00 3.27
256 257 7.584987 ACTTCAGATGTTCTATTTTCAAACCG 58.415 34.615 0.00 0.00 0.00 4.44
257 258 7.228706 ACTTCAGATGTTCTATTTTCAAACCGT 59.771 33.333 0.00 0.00 0.00 4.83
258 259 8.610248 TTCAGATGTTCTATTTTCAAACCGTA 57.390 30.769 0.00 0.00 0.00 4.02
259 260 8.786826 TCAGATGTTCTATTTTCAAACCGTAT 57.213 30.769 0.00 0.00 0.00 3.06
260 261 9.878667 TCAGATGTTCTATTTTCAAACCGTATA 57.121 29.630 0.00 0.00 0.00 1.47
306 307 5.146010 TGAAGGTGATAAAATTGGCAACC 57.854 39.130 0.00 0.00 0.00 3.77
307 308 4.837860 TGAAGGTGATAAAATTGGCAACCT 59.162 37.500 0.00 0.00 0.00 3.50
308 309 6.013379 TGAAGGTGATAAAATTGGCAACCTA 58.987 36.000 0.00 0.00 0.00 3.08
309 310 6.152661 TGAAGGTGATAAAATTGGCAACCTAG 59.847 38.462 0.00 0.00 0.00 3.02
310 311 4.956075 AGGTGATAAAATTGGCAACCTAGG 59.044 41.667 7.41 7.41 0.00 3.02
311 312 4.709886 GGTGATAAAATTGGCAACCTAGGT 59.290 41.667 9.21 9.21 0.00 3.08
312 313 5.889289 GGTGATAAAATTGGCAACCTAGGTA 59.111 40.000 16.67 0.00 0.00 3.08
313 314 6.549736 GGTGATAAAATTGGCAACCTAGGTAT 59.450 38.462 16.67 0.83 0.00 2.73
314 315 7.722285 GGTGATAAAATTGGCAACCTAGGTATA 59.278 37.037 16.67 0.00 0.00 1.47
315 316 8.565416 GTGATAAAATTGGCAACCTAGGTATAC 58.435 37.037 16.67 8.74 0.00 1.47
316 317 7.442969 TGATAAAATTGGCAACCTAGGTATACG 59.557 37.037 16.67 5.52 0.00 3.06
317 318 2.607631 TTGGCAACCTAGGTATACGC 57.392 50.000 16.67 15.11 0.00 4.42
318 319 0.386476 TGGCAACCTAGGTATACGCG 59.614 55.000 16.67 3.53 0.00 6.01
319 320 0.386838 GGCAACCTAGGTATACGCGT 59.613 55.000 19.17 19.17 0.00 6.01
320 321 1.608590 GGCAACCTAGGTATACGCGTA 59.391 52.381 22.94 22.94 0.00 4.42
321 322 2.351157 GGCAACCTAGGTATACGCGTAG 60.351 54.545 24.78 11.28 0.00 3.51
322 323 2.351157 GCAACCTAGGTATACGCGTAGG 60.351 54.545 24.78 21.85 46.64 3.18
323 324 3.141398 CAACCTAGGTATACGCGTAGGA 58.859 50.000 25.95 14.03 45.08 2.94
324 325 2.772287 ACCTAGGTATACGCGTAGGAC 58.228 52.381 25.95 22.99 45.08 3.85
325 326 2.370189 ACCTAGGTATACGCGTAGGACT 59.630 50.000 25.95 22.11 45.08 3.85
326 327 3.181450 ACCTAGGTATACGCGTAGGACTT 60.181 47.826 25.95 21.88 45.08 3.01
327 328 3.188048 CCTAGGTATACGCGTAGGACTTG 59.812 52.174 24.78 19.23 45.08 3.16
328 329 2.648059 AGGTATACGCGTAGGACTTGT 58.352 47.619 24.78 8.30 0.00 3.16
329 330 3.808728 AGGTATACGCGTAGGACTTGTA 58.191 45.455 24.78 7.25 0.00 2.41
330 331 4.199310 AGGTATACGCGTAGGACTTGTAA 58.801 43.478 24.78 0.00 0.00 2.41
331 332 4.640201 AGGTATACGCGTAGGACTTGTAAA 59.360 41.667 24.78 0.00 0.00 2.01
332 333 4.735338 GGTATACGCGTAGGACTTGTAAAC 59.265 45.833 24.78 6.78 0.00 2.01
333 334 4.708726 ATACGCGTAGGACTTGTAAACT 57.291 40.909 24.78 0.00 0.00 2.66
334 335 2.669364 ACGCGTAGGACTTGTAAACTG 58.331 47.619 11.67 0.00 0.00 3.16
335 336 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
336 337 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02
337 338 3.737266 CGCGTAGGACTTGTAAACTGAAA 59.263 43.478 0.00 0.00 0.00 2.69
338 339 4.375706 CGCGTAGGACTTGTAAACTGAAAC 60.376 45.833 0.00 0.00 0.00 2.78
339 340 4.375706 GCGTAGGACTTGTAAACTGAAACG 60.376 45.833 0.00 0.00 0.00 3.60
340 341 4.149396 CGTAGGACTTGTAAACTGAAACGG 59.851 45.833 0.00 0.00 0.00 4.44
341 342 4.411256 AGGACTTGTAAACTGAAACGGA 57.589 40.909 0.00 0.00 0.00 4.69
342 343 4.377897 AGGACTTGTAAACTGAAACGGAG 58.622 43.478 0.00 0.00 0.00 4.63
343 344 4.100498 AGGACTTGTAAACTGAAACGGAGA 59.900 41.667 0.00 0.00 0.00 3.71
344 345 4.995487 GGACTTGTAAACTGAAACGGAGAT 59.005 41.667 0.00 0.00 0.00 2.75
345 346 6.014840 AGGACTTGTAAACTGAAACGGAGATA 60.015 38.462 0.00 0.00 0.00 1.98
346 347 6.310711 GGACTTGTAAACTGAAACGGAGATAG 59.689 42.308 0.00 0.00 0.00 2.08
347 348 6.756221 ACTTGTAAACTGAAACGGAGATAGT 58.244 36.000 0.00 0.00 0.00 2.12
348 349 7.889469 ACTTGTAAACTGAAACGGAGATAGTA 58.111 34.615 0.00 0.00 0.00 1.82
349 350 8.027771 ACTTGTAAACTGAAACGGAGATAGTAG 58.972 37.037 0.00 0.00 0.00 2.57
350 351 6.860080 TGTAAACTGAAACGGAGATAGTAGG 58.140 40.000 0.00 0.00 0.00 3.18
351 352 6.660521 TGTAAACTGAAACGGAGATAGTAGGA 59.339 38.462 0.00 0.00 0.00 2.94
352 353 6.600882 AAACTGAAACGGAGATAGTAGGAA 57.399 37.500 0.00 0.00 0.00 3.36
353 354 5.838531 ACTGAAACGGAGATAGTAGGAAG 57.161 43.478 0.00 0.00 0.00 3.46
354 355 4.098196 ACTGAAACGGAGATAGTAGGAAGC 59.902 45.833 0.00 0.00 0.00 3.86
355 356 4.021229 TGAAACGGAGATAGTAGGAAGCA 58.979 43.478 0.00 0.00 0.00 3.91
356 357 4.649674 TGAAACGGAGATAGTAGGAAGCAT 59.350 41.667 0.00 0.00 0.00 3.79
357 358 5.831525 TGAAACGGAGATAGTAGGAAGCATA 59.168 40.000 0.00 0.00 0.00 3.14
358 359 5.968528 AACGGAGATAGTAGGAAGCATAG 57.031 43.478 0.00 0.00 0.00 2.23
359 360 4.988029 ACGGAGATAGTAGGAAGCATAGT 58.012 43.478 0.00 0.00 0.00 2.12
360 361 4.762765 ACGGAGATAGTAGGAAGCATAGTG 59.237 45.833 0.00 0.00 0.00 2.74
361 362 4.380023 CGGAGATAGTAGGAAGCATAGTGC 60.380 50.000 0.00 0.00 45.46 4.40
394 395 7.756395 AAAGAATTGAATGAGAGCTTTGAGA 57.244 32.000 0.00 0.00 0.00 3.27
395 396 7.756395 AAGAATTGAATGAGAGCTTTGAGAA 57.244 32.000 0.00 0.00 0.00 2.87
396 397 7.756395 AGAATTGAATGAGAGCTTTGAGAAA 57.244 32.000 0.00 0.00 0.00 2.52
397 398 8.350852 AGAATTGAATGAGAGCTTTGAGAAAT 57.649 30.769 0.00 0.00 0.00 2.17
398 399 8.804204 AGAATTGAATGAGAGCTTTGAGAAATT 58.196 29.630 0.00 0.00 0.00 1.82
399 400 8.758633 AATTGAATGAGAGCTTTGAGAAATTG 57.241 30.769 0.00 0.00 0.00 2.32
400 401 6.889301 TGAATGAGAGCTTTGAGAAATTGT 57.111 33.333 0.00 0.00 0.00 2.71
401 402 7.281040 TGAATGAGAGCTTTGAGAAATTGTT 57.719 32.000 0.00 0.00 0.00 2.83
402 403 7.143340 TGAATGAGAGCTTTGAGAAATTGTTG 58.857 34.615 0.00 0.00 0.00 3.33
403 404 6.889301 ATGAGAGCTTTGAGAAATTGTTGA 57.111 33.333 0.00 0.00 0.00 3.18
404 405 6.064846 TGAGAGCTTTGAGAAATTGTTGAC 57.935 37.500 0.00 0.00 0.00 3.18
405 406 5.824624 TGAGAGCTTTGAGAAATTGTTGACT 59.175 36.000 0.00 0.00 0.00 3.41
406 407 6.319658 TGAGAGCTTTGAGAAATTGTTGACTT 59.680 34.615 0.00 0.00 0.00 3.01
407 408 6.501781 AGAGCTTTGAGAAATTGTTGACTTG 58.498 36.000 0.00 0.00 0.00 3.16
408 409 5.594926 AGCTTTGAGAAATTGTTGACTTGG 58.405 37.500 0.00 0.00 0.00 3.61
409 410 5.127682 AGCTTTGAGAAATTGTTGACTTGGT 59.872 36.000 0.00 0.00 0.00 3.67
410 411 5.460091 GCTTTGAGAAATTGTTGACTTGGTC 59.540 40.000 0.00 0.00 0.00 4.02
411 412 6.522625 TTTGAGAAATTGTTGACTTGGTCA 57.477 33.333 0.00 0.00 41.09 4.02
422 423 4.715534 TGACTTGGTCAAAATAGGGTGA 57.284 40.909 0.00 0.00 39.78 4.02
423 424 5.255397 TGACTTGGTCAAAATAGGGTGAT 57.745 39.130 0.00 0.00 39.78 3.06
424 425 5.253330 TGACTTGGTCAAAATAGGGTGATC 58.747 41.667 0.00 0.00 39.78 2.92
425 426 5.014123 TGACTTGGTCAAAATAGGGTGATCT 59.986 40.000 0.00 0.00 39.78 2.75
426 427 6.214615 TGACTTGGTCAAAATAGGGTGATCTA 59.785 38.462 0.00 0.00 39.78 1.98
427 428 7.027874 ACTTGGTCAAAATAGGGTGATCTAA 57.972 36.000 0.00 0.00 0.00 2.10
428 429 7.643123 ACTTGGTCAAAATAGGGTGATCTAAT 58.357 34.615 0.00 0.00 0.00 1.73
429 430 8.116026 ACTTGGTCAAAATAGGGTGATCTAATT 58.884 33.333 0.00 0.00 0.00 1.40
430 431 8.519799 TTGGTCAAAATAGGGTGATCTAATTC 57.480 34.615 0.00 0.00 0.00 2.17
431 432 7.060421 TGGTCAAAATAGGGTGATCTAATTCC 58.940 38.462 0.00 0.00 0.00 3.01
432 433 7.060421 GGTCAAAATAGGGTGATCTAATTCCA 58.940 38.462 0.00 0.00 0.00 3.53
433 434 7.559897 GGTCAAAATAGGGTGATCTAATTCCAA 59.440 37.037 0.00 0.00 0.00 3.53
434 435 9.136323 GTCAAAATAGGGTGATCTAATTCCAAT 57.864 33.333 0.00 0.00 0.00 3.16
435 436 9.713684 TCAAAATAGGGTGATCTAATTCCAATT 57.286 29.630 0.00 0.00 0.00 2.32
436 437 9.754382 CAAAATAGGGTGATCTAATTCCAATTG 57.246 33.333 0.00 0.00 0.00 2.32
437 438 8.482852 AAATAGGGTGATCTAATTCCAATTGG 57.517 34.615 19.08 19.08 0.00 3.16
438 439 5.732331 AGGGTGATCTAATTCCAATTGGA 57.268 39.130 23.63 23.63 43.73 3.53
439 440 6.285329 AGGGTGATCTAATTCCAATTGGAT 57.715 37.500 27.53 16.30 45.54 3.41
440 441 7.406620 AGGGTGATCTAATTCCAATTGGATA 57.593 36.000 27.53 16.55 43.74 2.59
441 442 7.234355 AGGGTGATCTAATTCCAATTGGATAC 58.766 38.462 27.53 14.78 43.74 2.24
442 443 6.434340 GGGTGATCTAATTCCAATTGGATACC 59.566 42.308 27.53 20.96 43.74 2.73
443 444 7.234355 GGTGATCTAATTCCAATTGGATACCT 58.766 38.462 27.53 14.20 43.74 3.08
444 445 7.391833 GGTGATCTAATTCCAATTGGATACCTC 59.608 40.741 27.53 18.09 43.74 3.85
445 446 7.939039 GTGATCTAATTCCAATTGGATACCTCA 59.061 37.037 27.53 20.09 43.74 3.86
446 447 8.501904 TGATCTAATTCCAATTGGATACCTCAA 58.498 33.333 27.53 11.51 43.74 3.02
447 448 9.525826 GATCTAATTCCAATTGGATACCTCAAT 57.474 33.333 27.53 13.34 43.74 2.57
448 449 9.887862 ATCTAATTCCAATTGGATACCTCAATT 57.112 29.630 27.53 21.81 42.48 2.32
456 457 7.959658 AATTGGATACCTCAATTGATTGTGA 57.040 32.000 8.96 0.51 41.55 3.58
457 458 7.578310 ATTGGATACCTCAATTGATTGTGAG 57.422 36.000 8.96 0.00 40.84 3.51
466 467 6.024552 TCAATTGATTGTGAGGCTTTTACC 57.975 37.500 3.38 0.00 38.84 2.85
467 468 5.774690 TCAATTGATTGTGAGGCTTTTACCT 59.225 36.000 3.38 0.00 39.78 3.08
468 469 6.071952 TCAATTGATTGTGAGGCTTTTACCTC 60.072 38.462 3.38 3.57 44.71 3.85
469 470 8.180557 TCAATTGATTGTGAGGCTTTTACCTCT 61.181 37.037 3.38 0.00 44.72 3.69
480 481 7.533289 AGGCTTTTACCTCTAGATAGCTTAG 57.467 40.000 0.00 0.00 33.62 2.18
481 482 7.070629 AGGCTTTTACCTCTAGATAGCTTAGT 58.929 38.462 0.00 0.00 33.62 2.24
482 483 8.226112 AGGCTTTTACCTCTAGATAGCTTAGTA 58.774 37.037 0.00 0.00 33.62 1.82
483 484 8.858094 GGCTTTTACCTCTAGATAGCTTAGTAA 58.142 37.037 0.00 0.00 0.00 2.24
509 510 9.821240 ATATAGTAGATGTTCCTCTCATCAAGT 57.179 33.333 8.30 0.00 42.63 3.16
510 511 6.865834 AGTAGATGTTCCTCTCATCAAGTT 57.134 37.500 8.30 0.00 42.63 2.66
534 535 1.810151 TCTTTCTTTCCCAATTCCGCG 59.190 47.619 0.00 0.00 0.00 6.46
535 536 1.539827 CTTTCTTTCCCAATTCCGCGT 59.460 47.619 4.92 0.00 0.00 6.01
554 555 1.079750 GCACTCGTGGTTCTCTCCC 60.080 63.158 0.00 0.00 0.00 4.30
555 556 1.592223 CACTCGTGGTTCTCTCCCC 59.408 63.158 0.00 0.00 0.00 4.81
596 597 1.833630 TGAGATCCATCCTTGCTTCGT 59.166 47.619 0.00 0.00 0.00 3.85
606 607 1.611673 CCTTGCTTCGTCATGGTTCCT 60.612 52.381 0.00 0.00 0.00 3.36
607 608 1.466167 CTTGCTTCGTCATGGTTCCTG 59.534 52.381 0.00 0.00 0.00 3.86
608 609 0.684535 TGCTTCGTCATGGTTCCTGA 59.315 50.000 0.00 0.00 0.00 3.86
609 610 1.278985 TGCTTCGTCATGGTTCCTGAT 59.721 47.619 0.00 0.00 0.00 2.90
610 611 2.290260 TGCTTCGTCATGGTTCCTGATT 60.290 45.455 0.00 0.00 0.00 2.57
611 612 2.749621 GCTTCGTCATGGTTCCTGATTT 59.250 45.455 0.00 0.00 0.00 2.17
615 616 2.162208 CGTCATGGTTCCTGATTTGGTG 59.838 50.000 0.00 0.00 0.00 4.17
616 617 3.157087 GTCATGGTTCCTGATTTGGTGT 58.843 45.455 0.00 0.00 0.00 4.16
617 618 4.331968 GTCATGGTTCCTGATTTGGTGTA 58.668 43.478 0.00 0.00 0.00 2.90
618 619 4.949856 GTCATGGTTCCTGATTTGGTGTAT 59.050 41.667 0.00 0.00 0.00 2.29
619 620 5.066505 GTCATGGTTCCTGATTTGGTGTATC 59.933 44.000 0.00 0.00 0.00 2.24
620 621 3.963129 TGGTTCCTGATTTGGTGTATCC 58.037 45.455 0.00 0.00 0.00 2.59
621 622 3.332187 TGGTTCCTGATTTGGTGTATCCA 59.668 43.478 0.00 0.00 45.60 3.41
637 638 6.375455 GGTGTATCCAGTGATGAAAAAGATGT 59.625 38.462 0.00 0.00 35.97 3.06
669 670 1.214175 TGCCAGGTCCAACAAGAGAAA 59.786 47.619 0.00 0.00 0.00 2.52
672 673 3.321968 GCCAGGTCCAACAAGAGAAAAAT 59.678 43.478 0.00 0.00 0.00 1.82
687 688 7.587037 AGAGAAAAATTGGACAGATGTTTCA 57.413 32.000 3.42 0.00 34.56 2.69
753 754 4.750098 TCCACGATCTTTCAGACTGAAAAC 59.250 41.667 26.40 19.53 44.69 2.43
754 755 4.376413 CCACGATCTTTCAGACTGAAAACG 60.376 45.833 28.99 28.99 44.69 3.60
755 756 4.444388 CACGATCTTTCAGACTGAAAACGA 59.556 41.667 32.92 26.38 44.69 3.85
756 757 5.047847 ACGATCTTTCAGACTGAAAACGAA 58.952 37.500 32.92 21.12 44.69 3.85
757 758 5.696724 ACGATCTTTCAGACTGAAAACGAAT 59.303 36.000 32.92 23.41 44.69 3.34
758 759 6.866770 ACGATCTTTCAGACTGAAAACGAATA 59.133 34.615 32.92 18.36 44.69 1.75
759 760 7.062371 ACGATCTTTCAGACTGAAAACGAATAG 59.938 37.037 32.92 23.74 44.69 1.73
760 761 6.467723 TCTTTCAGACTGAAAACGAATAGC 57.532 37.500 26.40 0.00 44.69 2.97
761 762 5.989168 TCTTTCAGACTGAAAACGAATAGCA 59.011 36.000 26.40 5.59 44.69 3.49
762 763 6.650807 TCTTTCAGACTGAAAACGAATAGCAT 59.349 34.615 26.40 0.00 44.69 3.79
763 764 5.784750 TCAGACTGAAAACGAATAGCATG 57.215 39.130 1.64 0.00 0.00 4.06
764 765 5.478407 TCAGACTGAAAACGAATAGCATGA 58.522 37.500 1.64 0.00 0.00 3.07
765 766 5.931724 TCAGACTGAAAACGAATAGCATGAA 59.068 36.000 1.64 0.00 0.00 2.57
766 767 6.426633 TCAGACTGAAAACGAATAGCATGAAA 59.573 34.615 1.64 0.00 0.00 2.69
767 768 6.521133 CAGACTGAAAACGAATAGCATGAAAC 59.479 38.462 0.00 0.00 0.00 2.78
768 769 5.699839 ACTGAAAACGAATAGCATGAAACC 58.300 37.500 0.00 0.00 0.00 3.27
769 770 4.717991 TGAAAACGAATAGCATGAAACCG 58.282 39.130 0.00 0.00 0.00 4.44
770 771 4.452795 TGAAAACGAATAGCATGAAACCGA 59.547 37.500 0.00 0.00 0.00 4.69
771 772 5.123186 TGAAAACGAATAGCATGAAACCGAT 59.877 36.000 0.00 0.00 0.00 4.18
772 773 4.536364 AACGAATAGCATGAAACCGATG 57.464 40.909 0.00 0.00 0.00 3.84
773 774 2.872245 ACGAATAGCATGAAACCGATGG 59.128 45.455 0.00 0.00 0.00 3.51
774 775 2.872245 CGAATAGCATGAAACCGATGGT 59.128 45.455 0.00 0.00 37.65 3.55
776 777 4.552767 CGAATAGCATGAAACCGATGGTTC 60.553 45.833 1.02 0.00 46.20 3.62
777 778 2.496899 AGCATGAAACCGATGGTTCT 57.503 45.000 1.02 0.00 46.20 3.01
778 779 3.627395 AGCATGAAACCGATGGTTCTA 57.373 42.857 1.02 0.00 46.20 2.10
779 780 3.950397 AGCATGAAACCGATGGTTCTAA 58.050 40.909 1.02 0.00 46.20 2.10
780 781 3.941483 AGCATGAAACCGATGGTTCTAAG 59.059 43.478 1.02 0.00 46.20 2.18
781 782 3.487544 GCATGAAACCGATGGTTCTAAGC 60.488 47.826 1.02 1.69 46.20 3.09
782 783 3.410631 TGAAACCGATGGTTCTAAGCA 57.589 42.857 1.02 0.00 46.20 3.91
783 784 3.745799 TGAAACCGATGGTTCTAAGCAA 58.254 40.909 1.02 0.00 46.20 3.91
784 785 3.500680 TGAAACCGATGGTTCTAAGCAAC 59.499 43.478 1.02 0.00 46.20 4.17
785 786 3.418684 AACCGATGGTTCTAAGCAACT 57.581 42.857 0.00 0.00 43.05 3.16
786 787 3.418684 ACCGATGGTTCTAAGCAACTT 57.581 42.857 0.00 0.00 40.14 2.66
787 788 3.074412 ACCGATGGTTCTAAGCAACTTG 58.926 45.455 0.00 0.00 40.14 3.16
788 789 2.159517 CCGATGGTTCTAAGCAACTTGC 60.160 50.000 5.55 5.55 45.46 4.01
789 790 2.159517 CGATGGTTCTAAGCAACTTGCC 60.160 50.000 10.25 0.00 46.52 4.52
790 791 2.656947 TGGTTCTAAGCAACTTGCCT 57.343 45.000 10.25 0.00 46.52 4.75
791 792 2.504367 TGGTTCTAAGCAACTTGCCTC 58.496 47.619 10.25 0.00 46.52 4.70
792 793 1.464997 GGTTCTAAGCAACTTGCCTCG 59.535 52.381 10.25 0.00 46.52 4.63
793 794 2.143925 GTTCTAAGCAACTTGCCTCGT 58.856 47.619 10.25 0.00 46.52 4.18
794 795 2.543777 TCTAAGCAACTTGCCTCGTT 57.456 45.000 10.25 1.04 46.52 3.85
795 796 2.846193 TCTAAGCAACTTGCCTCGTTT 58.154 42.857 10.25 0.68 46.52 3.60
796 797 2.548057 TCTAAGCAACTTGCCTCGTTTG 59.452 45.455 10.25 0.20 46.52 2.93
797 798 0.385390 AAGCAACTTGCCTCGTTTGG 59.615 50.000 10.25 0.00 46.52 3.28
798 799 0.465460 AGCAACTTGCCTCGTTTGGA 60.465 50.000 10.25 0.00 46.52 3.53
799 800 0.383949 GCAACTTGCCTCGTTTGGAA 59.616 50.000 1.95 0.00 37.42 3.53
800 801 1.202359 GCAACTTGCCTCGTTTGGAAA 60.202 47.619 1.95 0.00 37.42 3.13
801 802 2.737039 GCAACTTGCCTCGTTTGGAAAA 60.737 45.455 1.95 0.00 37.42 2.29
802 803 3.716601 CAACTTGCCTCGTTTGGAAAAT 58.283 40.909 0.00 0.00 0.00 1.82
803 804 4.119136 CAACTTGCCTCGTTTGGAAAATT 58.881 39.130 0.00 0.00 0.00 1.82
804 805 4.400529 ACTTGCCTCGTTTGGAAAATTT 57.599 36.364 0.00 0.00 0.00 1.82
805 806 4.368315 ACTTGCCTCGTTTGGAAAATTTC 58.632 39.130 0.00 0.00 0.00 2.17
821 822 6.884280 AAAATTTCCACGATCTTTCAGACT 57.116 33.333 0.00 0.00 0.00 3.24
822 823 5.869753 AATTTCCACGATCTTTCAGACTG 57.130 39.130 0.00 0.00 0.00 3.51
823 824 4.600692 TTTCCACGATCTTTCAGACTGA 57.399 40.909 0.00 0.00 0.00 3.41
824 825 4.600692 TTCCACGATCTTTCAGACTGAA 57.399 40.909 13.99 13.99 34.03 3.02
825 826 4.600692 TCCACGATCTTTCAGACTGAAA 57.399 40.909 25.27 25.27 43.37 2.69
826 827 4.956085 TCCACGATCTTTCAGACTGAAAA 58.044 39.130 26.40 18.71 44.69 2.29
850 851 0.739462 TAGCATGAAACCGACGGCTG 60.739 55.000 15.39 5.27 33.10 4.85
882 883 7.952671 ACTTGCCTCGAATCACTATCTAAATA 58.047 34.615 0.00 0.00 0.00 1.40
887 888 7.122353 GCCTCGAATCACTATCTAAATACCCTA 59.878 40.741 0.00 0.00 0.00 3.53
907 908 6.609616 ACCCTACAACAAGAGGAAATGAAAAA 59.390 34.615 0.00 0.00 34.46 1.94
947 948 2.260844 AGCACAACAAGCTTCTAGCA 57.739 45.000 0.00 0.00 45.56 3.49
1033 1034 4.154015 TCGTAGTCATGCAGTTTTTCATGG 59.846 41.667 0.00 0.00 40.20 3.66
1090 1091 2.360350 ATGCAGCCACCTTGTCCG 60.360 61.111 0.00 0.00 0.00 4.79
1100 1101 0.250901 ACCTTGTCCGCTGCTGAAAT 60.251 50.000 0.00 0.00 0.00 2.17
1102 1103 1.270550 CCTTGTCCGCTGCTGAAATTT 59.729 47.619 0.00 0.00 0.00 1.82
1150 1156 3.320256 AGCGCTCATGTCATTGAGATCTA 59.680 43.478 2.64 0.00 44.88 1.98
1190 1196 2.041485 TCCAAGCACTGAATTCATGGGA 59.959 45.455 19.97 10.93 0.00 4.37
1648 1953 5.669477 AGTATCTTCATCTGAGAGCAAACC 58.331 41.667 0.00 0.00 0.00 3.27
1669 1974 4.896482 ACCTGCTAGTAGGAGAAATACCAG 59.104 45.833 31.09 6.08 40.42 4.00
1675 1980 4.290942 AGTAGGAGAAATACCAGTGGAGG 58.709 47.826 18.40 0.00 0.00 4.30
2515 3111 3.450457 TGGAAACCTTGTCAACTTGCAAT 59.550 39.130 0.00 0.00 0.00 3.56
2790 3386 7.888250 ACCAAAAGAGATTTTCCTCATATCC 57.112 36.000 0.00 0.00 35.68 2.59
2791 3387 7.646884 ACCAAAAGAGATTTTCCTCATATCCT 58.353 34.615 0.00 0.00 35.68 3.24
2792 3388 7.559170 ACCAAAAGAGATTTTCCTCATATCCTG 59.441 37.037 0.00 0.00 35.68 3.86
2793 3389 7.014038 CCAAAAGAGATTTTCCTCATATCCTGG 59.986 40.741 0.00 0.00 35.68 4.45
2794 3390 5.839517 AGAGATTTTCCTCATATCCTGGG 57.160 43.478 0.00 0.00 35.68 4.45
2797 3393 4.977739 AGATTTTCCTCATATCCTGGGTGA 59.022 41.667 0.00 0.00 0.00 4.02
2798 3394 5.433051 AGATTTTCCTCATATCCTGGGTGAA 59.567 40.000 0.00 0.00 0.00 3.18
2799 3395 4.503714 TTTCCTCATATCCTGGGTGAAC 57.496 45.455 0.00 0.00 0.00 3.18
2800 3396 3.421394 TCCTCATATCCTGGGTGAACT 57.579 47.619 0.00 0.00 0.00 3.01
2801 3397 4.552883 TCCTCATATCCTGGGTGAACTA 57.447 45.455 0.00 0.00 0.00 2.24
2802 3398 5.093236 TCCTCATATCCTGGGTGAACTAT 57.907 43.478 0.00 0.00 0.00 2.12
2803 3399 6.227624 TCCTCATATCCTGGGTGAACTATA 57.772 41.667 0.00 0.00 0.00 1.31
2804 3400 6.017192 TCCTCATATCCTGGGTGAACTATAC 58.983 44.000 0.00 0.00 0.00 1.47
2805 3401 6.019748 CCTCATATCCTGGGTGAACTATACT 58.980 44.000 0.00 0.00 0.00 2.12
2806 3402 7.019254 TCCTCATATCCTGGGTGAACTATACTA 59.981 40.741 0.00 0.00 0.00 1.82
2831 3453 1.070289 ACTGGGACGTTTTCTCCAGAC 59.930 52.381 21.12 0.00 41.71 3.51
2872 3494 5.762218 GTCTTGGATATCTGGATTTGTCTGG 59.238 44.000 2.05 0.00 0.00 3.86
3084 3706 0.727398 GCTCGTTACCCTGAACATGC 59.273 55.000 0.00 0.00 0.00 4.06
3196 3818 5.741011 TGGAGGTATACCACAATTCAACTC 58.259 41.667 23.87 8.13 38.89 3.01
3201 3823 5.756347 GGTATACCACAATTCAACTCGCATA 59.244 40.000 17.44 0.00 35.64 3.14
3329 3951 3.002862 CACGACGGAAATTGAGAACCAAA 59.997 43.478 0.00 0.00 38.43 3.28
3407 4029 3.986572 CCTATGCTGAATTAGTGAGAGCG 59.013 47.826 0.00 0.00 32.05 5.03
3693 4315 6.111669 TGCCAAATGGAAATCTTGATCAAA 57.888 33.333 9.88 1.39 37.39 2.69
3694 4316 6.531923 TGCCAAATGGAAATCTTGATCAAAA 58.468 32.000 9.88 0.00 37.39 2.44
3725 4347 1.127343 GTCTCCTGGAAGATGGGAGG 58.873 60.000 0.00 0.00 44.72 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.317936 CTCCCTAATTTTGAAGCCATTTTATTC 57.682 33.333 0.00 0.00 0.00 1.75
2 3 8.825774 ACTCCCTAATTTTGAAGCCATTTTATT 58.174 29.630 0.00 0.00 0.00 1.40
3 4 8.379428 ACTCCCTAATTTTGAAGCCATTTTAT 57.621 30.769 0.00 0.00 0.00 1.40
4 5 7.790782 ACTCCCTAATTTTGAAGCCATTTTA 57.209 32.000 0.00 0.00 0.00 1.52
5 6 6.686484 ACTCCCTAATTTTGAAGCCATTTT 57.314 33.333 0.00 0.00 0.00 1.82
6 7 7.619302 TCATACTCCCTAATTTTGAAGCCATTT 59.381 33.333 0.00 0.00 0.00 2.32
7 8 7.125391 TCATACTCCCTAATTTTGAAGCCATT 58.875 34.615 0.00 0.00 0.00 3.16
8 9 6.672593 TCATACTCCCTAATTTTGAAGCCAT 58.327 36.000 0.00 0.00 0.00 4.40
9 10 6.073447 TCATACTCCCTAATTTTGAAGCCA 57.927 37.500 0.00 0.00 0.00 4.75
10 11 6.772716 TCATCATACTCCCTAATTTTGAAGCC 59.227 38.462 0.00 0.00 0.00 4.35
11 12 7.807977 TCATCATACTCCCTAATTTTGAAGC 57.192 36.000 0.00 0.00 0.00 3.86
51 52 8.960591 GGTCAATAATTTTTCAAGGATCTCTCA 58.039 33.333 0.00 0.00 0.00 3.27
52 53 8.409371 GGGTCAATAATTTTTCAAGGATCTCTC 58.591 37.037 0.00 0.00 0.00 3.20
53 54 7.895429 TGGGTCAATAATTTTTCAAGGATCTCT 59.105 33.333 0.00 0.00 0.00 3.10
54 55 8.066612 TGGGTCAATAATTTTTCAAGGATCTC 57.933 34.615 0.00 0.00 0.00 2.75
55 56 8.480501 CATGGGTCAATAATTTTTCAAGGATCT 58.519 33.333 0.00 0.00 0.00 2.75
56 57 8.477256 TCATGGGTCAATAATTTTTCAAGGATC 58.523 33.333 0.00 0.00 0.00 3.36
57 58 8.260114 GTCATGGGTCAATAATTTTTCAAGGAT 58.740 33.333 0.00 0.00 0.00 3.24
58 59 7.310361 GGTCATGGGTCAATAATTTTTCAAGGA 60.310 37.037 0.00 0.00 0.00 3.36
59 60 6.818142 GGTCATGGGTCAATAATTTTTCAAGG 59.182 38.462 0.00 0.00 0.00 3.61
60 61 7.614494 AGGTCATGGGTCAATAATTTTTCAAG 58.386 34.615 0.00 0.00 0.00 3.02
61 62 7.552050 AGGTCATGGGTCAATAATTTTTCAA 57.448 32.000 0.00 0.00 0.00 2.69
62 63 7.893302 ACTAGGTCATGGGTCAATAATTTTTCA 59.107 33.333 0.00 0.00 0.00 2.69
63 64 8.293699 ACTAGGTCATGGGTCAATAATTTTTC 57.706 34.615 0.00 0.00 0.00 2.29
64 65 8.664669 AACTAGGTCATGGGTCAATAATTTTT 57.335 30.769 0.00 0.00 0.00 1.94
65 66 7.342026 GGAACTAGGTCATGGGTCAATAATTTT 59.658 37.037 10.60 0.00 0.00 1.82
66 67 6.833933 GGAACTAGGTCATGGGTCAATAATTT 59.166 38.462 10.60 0.00 0.00 1.82
67 68 6.069088 TGGAACTAGGTCATGGGTCAATAATT 60.069 38.462 10.60 0.00 0.00 1.40
68 69 5.431731 TGGAACTAGGTCATGGGTCAATAAT 59.568 40.000 10.60 0.00 0.00 1.28
69 70 4.785914 TGGAACTAGGTCATGGGTCAATAA 59.214 41.667 10.60 0.00 0.00 1.40
70 71 4.367166 TGGAACTAGGTCATGGGTCAATA 58.633 43.478 10.60 0.00 0.00 1.90
71 72 3.189606 TGGAACTAGGTCATGGGTCAAT 58.810 45.455 10.60 0.00 0.00 2.57
72 73 2.626785 TGGAACTAGGTCATGGGTCAA 58.373 47.619 10.60 0.00 0.00 3.18
73 74 2.335681 TGGAACTAGGTCATGGGTCA 57.664 50.000 10.60 0.00 0.00 4.02
74 75 3.933861 ATTGGAACTAGGTCATGGGTC 57.066 47.619 10.60 0.00 0.00 4.46
75 76 5.036916 TCTAATTGGAACTAGGTCATGGGT 58.963 41.667 10.60 0.00 0.00 4.51
76 77 5.630415 TCTAATTGGAACTAGGTCATGGG 57.370 43.478 10.60 0.00 0.00 4.00
77 78 6.763610 GTCTTCTAATTGGAACTAGGTCATGG 59.236 42.308 10.60 0.00 0.00 3.66
78 79 6.763610 GGTCTTCTAATTGGAACTAGGTCATG 59.236 42.308 10.60 0.00 0.00 3.07
79 80 6.674419 AGGTCTTCTAATTGGAACTAGGTCAT 59.326 38.462 10.60 0.00 0.00 3.06
80 81 6.023603 AGGTCTTCTAATTGGAACTAGGTCA 58.976 40.000 10.60 0.00 0.00 4.02
81 82 6.154706 TGAGGTCTTCTAATTGGAACTAGGTC 59.845 42.308 0.00 0.00 0.00 3.85
82 83 6.023603 TGAGGTCTTCTAATTGGAACTAGGT 58.976 40.000 0.00 0.00 0.00 3.08
83 84 6.546428 TGAGGTCTTCTAATTGGAACTAGG 57.454 41.667 0.00 0.00 0.00 3.02
86 87 9.981460 ATTAATTGAGGTCTTCTAATTGGAACT 57.019 29.630 0.00 0.00 0.00 3.01
89 90 9.753674 ACAATTAATTGAGGTCTTCTAATTGGA 57.246 29.630 30.18 0.00 39.42 3.53
90 91 9.793252 CACAATTAATTGAGGTCTTCTAATTGG 57.207 33.333 30.18 2.49 39.42 3.16
112 113 9.498176 GAGGTAGTAATTTTTAAGTCCTCACAA 57.502 33.333 0.00 0.00 38.81 3.33
113 114 8.877195 AGAGGTAGTAATTTTTAAGTCCTCACA 58.123 33.333 0.00 0.00 40.65 3.58
114 115 9.368674 GAGAGGTAGTAATTTTTAAGTCCTCAC 57.631 37.037 0.00 0.00 40.65 3.51
115 116 9.322769 AGAGAGGTAGTAATTTTTAAGTCCTCA 57.677 33.333 0.00 0.00 40.65 3.86
116 117 9.806203 GAGAGAGGTAGTAATTTTTAAGTCCTC 57.194 37.037 0.00 0.00 39.12 3.71
117 118 9.549984 AGAGAGAGGTAGTAATTTTTAAGTCCT 57.450 33.333 0.00 0.00 0.00 3.85
130 131 8.162746 GCCCTATAAACTAAGAGAGAGGTAGTA 58.837 40.741 0.00 0.00 0.00 1.82
131 132 7.005902 GCCCTATAAACTAAGAGAGAGGTAGT 58.994 42.308 0.00 0.00 0.00 2.73
132 133 6.149807 CGCCCTATAAACTAAGAGAGAGGTAG 59.850 46.154 0.00 0.00 0.00 3.18
133 134 6.002704 CGCCCTATAAACTAAGAGAGAGGTA 58.997 44.000 0.00 0.00 0.00 3.08
134 135 4.828387 CGCCCTATAAACTAAGAGAGAGGT 59.172 45.833 0.00 0.00 0.00 3.85
135 136 4.828387 ACGCCCTATAAACTAAGAGAGAGG 59.172 45.833 0.00 0.00 0.00 3.69
136 137 6.347563 CGTACGCCCTATAAACTAAGAGAGAG 60.348 46.154 0.52 0.00 0.00 3.20
137 138 5.468072 CGTACGCCCTATAAACTAAGAGAGA 59.532 44.000 0.52 0.00 0.00 3.10
138 139 5.238214 ACGTACGCCCTATAAACTAAGAGAG 59.762 44.000 16.72 0.00 0.00 3.20
139 140 5.008019 CACGTACGCCCTATAAACTAAGAGA 59.992 44.000 16.72 0.00 0.00 3.10
140 141 5.210715 CACGTACGCCCTATAAACTAAGAG 58.789 45.833 16.72 0.00 0.00 2.85
141 142 4.640201 ACACGTACGCCCTATAAACTAAGA 59.360 41.667 16.72 0.00 0.00 2.10
142 143 4.736793 CACACGTACGCCCTATAAACTAAG 59.263 45.833 16.72 0.00 0.00 2.18
143 144 4.671377 CACACGTACGCCCTATAAACTAA 58.329 43.478 16.72 0.00 0.00 2.24
144 145 3.489059 GCACACGTACGCCCTATAAACTA 60.489 47.826 16.72 0.00 0.00 2.24
145 146 2.736400 GCACACGTACGCCCTATAAACT 60.736 50.000 16.72 0.00 0.00 2.66
146 147 1.589779 GCACACGTACGCCCTATAAAC 59.410 52.381 16.72 0.00 0.00 2.01
147 148 1.477700 AGCACACGTACGCCCTATAAA 59.522 47.619 16.72 0.00 0.00 1.40
148 149 1.066002 GAGCACACGTACGCCCTATAA 59.934 52.381 16.72 0.00 0.00 0.98
149 150 0.664761 GAGCACACGTACGCCCTATA 59.335 55.000 16.72 0.00 0.00 1.31
150 151 1.035932 AGAGCACACGTACGCCCTAT 61.036 55.000 16.72 0.74 0.00 2.57
151 152 1.246056 AAGAGCACACGTACGCCCTA 61.246 55.000 16.72 0.00 0.00 3.53
152 153 1.246056 TAAGAGCACACGTACGCCCT 61.246 55.000 16.72 6.22 0.00 5.19
153 154 0.801067 CTAAGAGCACACGTACGCCC 60.801 60.000 16.72 0.85 0.00 6.13
154 155 0.801067 CCTAAGAGCACACGTACGCC 60.801 60.000 16.72 1.24 0.00 5.68
155 156 0.109412 ACCTAAGAGCACACGTACGC 60.109 55.000 16.72 0.00 0.00 4.42
156 157 1.789410 CGACCTAAGAGCACACGTACG 60.789 57.143 15.01 15.01 0.00 3.67
157 158 1.198637 ACGACCTAAGAGCACACGTAC 59.801 52.381 0.00 0.00 0.00 3.67
158 159 1.527034 ACGACCTAAGAGCACACGTA 58.473 50.000 0.00 0.00 0.00 3.57
159 160 0.672342 AACGACCTAAGAGCACACGT 59.328 50.000 0.00 0.00 0.00 4.49
160 161 2.624316 TAACGACCTAAGAGCACACG 57.376 50.000 0.00 0.00 0.00 4.49
161 162 5.407387 TCAAATTAACGACCTAAGAGCACAC 59.593 40.000 0.00 0.00 0.00 3.82
162 163 5.407387 GTCAAATTAACGACCTAAGAGCACA 59.593 40.000 0.00 0.00 0.00 4.57
163 164 5.163884 GGTCAAATTAACGACCTAAGAGCAC 60.164 44.000 12.25 0.00 46.83 4.40
164 165 4.933400 GGTCAAATTAACGACCTAAGAGCA 59.067 41.667 12.25 0.00 46.83 4.26
165 166 5.466432 GGTCAAATTAACGACCTAAGAGC 57.534 43.478 12.25 0.00 46.83 4.09
173 174 8.031848 TGTATTAGGTTGGTCAAATTAACGAC 57.968 34.615 0.00 0.00 0.00 4.34
174 175 8.618702 TTGTATTAGGTTGGTCAAATTAACGA 57.381 30.769 0.00 0.00 0.00 3.85
175 176 8.508875 ACTTGTATTAGGTTGGTCAAATTAACG 58.491 33.333 0.00 0.00 0.00 3.18
176 177 9.836076 GACTTGTATTAGGTTGGTCAAATTAAC 57.164 33.333 0.00 0.00 0.00 2.01
177 178 9.575868 TGACTTGTATTAGGTTGGTCAAATTAA 57.424 29.630 0.00 0.00 30.81 1.40
178 179 9.747898 ATGACTTGTATTAGGTTGGTCAAATTA 57.252 29.630 0.00 0.00 36.16 1.40
179 180 8.650143 ATGACTTGTATTAGGTTGGTCAAATT 57.350 30.769 0.00 0.00 36.16 1.82
180 181 9.920946 ATATGACTTGTATTAGGTTGGTCAAAT 57.079 29.630 0.00 0.00 36.16 2.32
229 230 9.750125 GGTTTGAAAATAGAACATCTGAAGTTT 57.250 29.630 0.00 0.00 0.00 2.66
230 231 8.076178 CGGTTTGAAAATAGAACATCTGAAGTT 58.924 33.333 0.00 0.00 0.00 2.66
231 232 7.228706 ACGGTTTGAAAATAGAACATCTGAAGT 59.771 33.333 0.00 0.00 0.00 3.01
232 233 7.584987 ACGGTTTGAAAATAGAACATCTGAAG 58.415 34.615 0.00 0.00 0.00 3.02
233 234 7.504924 ACGGTTTGAAAATAGAACATCTGAA 57.495 32.000 0.00 0.00 0.00 3.02
234 235 8.786826 ATACGGTTTGAAAATAGAACATCTGA 57.213 30.769 0.00 0.00 0.00 3.27
280 281 8.637986 GGTTGCCAATTTTATCACCTTCATATA 58.362 33.333 0.00 0.00 0.00 0.86
281 282 7.345392 AGGTTGCCAATTTTATCACCTTCATAT 59.655 33.333 0.00 0.00 0.00 1.78
282 283 6.667414 AGGTTGCCAATTTTATCACCTTCATA 59.333 34.615 0.00 0.00 0.00 2.15
283 284 5.484998 AGGTTGCCAATTTTATCACCTTCAT 59.515 36.000 0.00 0.00 0.00 2.57
284 285 4.837860 AGGTTGCCAATTTTATCACCTTCA 59.162 37.500 0.00 0.00 0.00 3.02
285 286 5.405935 AGGTTGCCAATTTTATCACCTTC 57.594 39.130 0.00 0.00 0.00 3.46
286 287 5.422012 CCTAGGTTGCCAATTTTATCACCTT 59.578 40.000 0.00 0.00 0.00 3.50
287 288 4.956075 CCTAGGTTGCCAATTTTATCACCT 59.044 41.667 0.00 0.00 0.00 4.00
288 289 4.709886 ACCTAGGTTGCCAATTTTATCACC 59.290 41.667 9.21 0.00 0.00 4.02
289 290 5.914898 ACCTAGGTTGCCAATTTTATCAC 57.085 39.130 9.21 0.00 0.00 3.06
290 291 7.442969 CGTATACCTAGGTTGCCAATTTTATCA 59.557 37.037 22.11 0.00 0.00 2.15
291 292 7.572539 GCGTATACCTAGGTTGCCAATTTTATC 60.573 40.741 22.11 0.00 0.00 1.75
292 293 6.206048 GCGTATACCTAGGTTGCCAATTTTAT 59.794 38.462 22.11 5.71 0.00 1.40
293 294 5.528320 GCGTATACCTAGGTTGCCAATTTTA 59.472 40.000 22.11 0.00 0.00 1.52
294 295 4.337274 GCGTATACCTAGGTTGCCAATTTT 59.663 41.667 22.11 0.00 0.00 1.82
295 296 3.881089 GCGTATACCTAGGTTGCCAATTT 59.119 43.478 22.11 0.00 0.00 1.82
296 297 3.473625 GCGTATACCTAGGTTGCCAATT 58.526 45.455 22.11 0.00 0.00 2.32
297 298 2.547218 CGCGTATACCTAGGTTGCCAAT 60.547 50.000 22.11 9.64 0.00 3.16
298 299 1.202440 CGCGTATACCTAGGTTGCCAA 60.202 52.381 22.11 0.75 0.00 4.52
299 300 0.386476 CGCGTATACCTAGGTTGCCA 59.614 55.000 22.11 1.21 0.00 4.92
300 301 0.386838 ACGCGTATACCTAGGTTGCC 59.613 55.000 22.11 7.02 0.00 4.52
301 302 2.351157 CCTACGCGTATACCTAGGTTGC 60.351 54.545 22.11 17.41 0.00 4.17
302 303 3.058639 GTCCTACGCGTATACCTAGGTTG 60.059 52.174 22.11 9.15 0.00 3.77
303 304 3.142174 GTCCTACGCGTATACCTAGGTT 58.858 50.000 22.11 10.62 0.00 3.50
304 305 2.370189 AGTCCTACGCGTATACCTAGGT 59.630 50.000 20.91 20.57 0.00 3.08
305 306 3.051081 AGTCCTACGCGTATACCTAGG 57.949 52.381 20.91 18.03 0.00 3.02
306 307 3.812053 ACAAGTCCTACGCGTATACCTAG 59.188 47.826 20.91 8.56 0.00 3.02
307 308 3.808728 ACAAGTCCTACGCGTATACCTA 58.191 45.455 20.91 0.00 0.00 3.08
308 309 2.648059 ACAAGTCCTACGCGTATACCT 58.352 47.619 20.91 12.19 0.00 3.08
309 310 4.552166 TTACAAGTCCTACGCGTATACC 57.448 45.455 20.91 10.04 0.00 2.73
310 311 5.453587 CAGTTTACAAGTCCTACGCGTATAC 59.546 44.000 20.91 19.74 0.00 1.47
311 312 5.353956 TCAGTTTACAAGTCCTACGCGTATA 59.646 40.000 20.91 8.44 0.00 1.47
312 313 4.156556 TCAGTTTACAAGTCCTACGCGTAT 59.843 41.667 20.91 5.41 0.00 3.06
313 314 3.501828 TCAGTTTACAAGTCCTACGCGTA 59.498 43.478 19.40 19.40 0.00 4.42
314 315 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
315 316 2.937591 TCAGTTTACAAGTCCTACGCG 58.062 47.619 3.53 3.53 0.00 6.01
316 317 4.375706 CGTTTCAGTTTACAAGTCCTACGC 60.376 45.833 0.00 0.00 0.00 4.42
317 318 4.149396 CCGTTTCAGTTTACAAGTCCTACG 59.851 45.833 0.00 0.00 0.00 3.51
318 319 5.291971 TCCGTTTCAGTTTACAAGTCCTAC 58.708 41.667 0.00 0.00 0.00 3.18
319 320 5.302568 TCTCCGTTTCAGTTTACAAGTCCTA 59.697 40.000 0.00 0.00 0.00 2.94
320 321 4.100498 TCTCCGTTTCAGTTTACAAGTCCT 59.900 41.667 0.00 0.00 0.00 3.85
321 322 4.374399 TCTCCGTTTCAGTTTACAAGTCC 58.626 43.478 0.00 0.00 0.00 3.85
322 323 6.867293 ACTATCTCCGTTTCAGTTTACAAGTC 59.133 38.462 0.00 0.00 0.00 3.01
323 324 6.756221 ACTATCTCCGTTTCAGTTTACAAGT 58.244 36.000 0.00 0.00 0.00 3.16
324 325 7.488471 CCTACTATCTCCGTTTCAGTTTACAAG 59.512 40.741 0.00 0.00 0.00 3.16
325 326 7.177216 TCCTACTATCTCCGTTTCAGTTTACAA 59.823 37.037 0.00 0.00 0.00 2.41
326 327 6.660521 TCCTACTATCTCCGTTTCAGTTTACA 59.339 38.462 0.00 0.00 0.00 2.41
327 328 7.093322 TCCTACTATCTCCGTTTCAGTTTAC 57.907 40.000 0.00 0.00 0.00 2.01
328 329 7.630082 GCTTCCTACTATCTCCGTTTCAGTTTA 60.630 40.741 0.00 0.00 0.00 2.01
329 330 6.600882 TTCCTACTATCTCCGTTTCAGTTT 57.399 37.500 0.00 0.00 0.00 2.66
330 331 5.394333 GCTTCCTACTATCTCCGTTTCAGTT 60.394 44.000 0.00 0.00 0.00 3.16
331 332 4.098196 GCTTCCTACTATCTCCGTTTCAGT 59.902 45.833 0.00 0.00 0.00 3.41
332 333 4.098044 TGCTTCCTACTATCTCCGTTTCAG 59.902 45.833 0.00 0.00 0.00 3.02
333 334 4.021229 TGCTTCCTACTATCTCCGTTTCA 58.979 43.478 0.00 0.00 0.00 2.69
334 335 4.650754 TGCTTCCTACTATCTCCGTTTC 57.349 45.455 0.00 0.00 0.00 2.78
335 336 5.834204 ACTATGCTTCCTACTATCTCCGTTT 59.166 40.000 0.00 0.00 0.00 3.60
336 337 5.241949 CACTATGCTTCCTACTATCTCCGTT 59.758 44.000 0.00 0.00 0.00 4.44
337 338 4.762765 CACTATGCTTCCTACTATCTCCGT 59.237 45.833 0.00 0.00 0.00 4.69
338 339 4.380023 GCACTATGCTTCCTACTATCTCCG 60.380 50.000 0.00 0.00 40.96 4.63
339 340 4.524714 TGCACTATGCTTCCTACTATCTCC 59.475 45.833 2.02 0.00 45.31 3.71
340 341 5.713792 TGCACTATGCTTCCTACTATCTC 57.286 43.478 2.02 0.00 45.31 2.75
341 342 6.951198 ACTATGCACTATGCTTCCTACTATCT 59.049 38.462 2.02 0.00 45.31 1.98
342 343 7.164230 ACTATGCACTATGCTTCCTACTATC 57.836 40.000 2.02 0.00 45.31 2.08
343 344 8.830915 ATACTATGCACTATGCTTCCTACTAT 57.169 34.615 2.02 0.00 45.31 2.12
344 345 9.749340 TTATACTATGCACTATGCTTCCTACTA 57.251 33.333 2.02 0.00 45.31 1.82
345 346 8.651589 TTATACTATGCACTATGCTTCCTACT 57.348 34.615 2.02 0.00 45.31 2.57
346 347 9.706691 TTTTATACTATGCACTATGCTTCCTAC 57.293 33.333 2.02 0.00 45.31 3.18
347 348 9.929180 CTTTTATACTATGCACTATGCTTCCTA 57.071 33.333 2.02 0.00 45.31 2.94
348 349 8.651389 TCTTTTATACTATGCACTATGCTTCCT 58.349 33.333 2.02 0.00 45.31 3.36
349 350 8.833231 TCTTTTATACTATGCACTATGCTTCC 57.167 34.615 2.02 0.00 45.31 3.46
368 369 9.288576 TCTCAAAGCTCTCATTCAATTCTTTTA 57.711 29.630 0.00 0.00 0.00 1.52
369 370 8.174733 TCTCAAAGCTCTCATTCAATTCTTTT 57.825 30.769 0.00 0.00 0.00 2.27
370 371 7.756395 TCTCAAAGCTCTCATTCAATTCTTT 57.244 32.000 0.00 0.00 0.00 2.52
371 372 7.756395 TTCTCAAAGCTCTCATTCAATTCTT 57.244 32.000 0.00 0.00 0.00 2.52
372 373 7.756395 TTTCTCAAAGCTCTCATTCAATTCT 57.244 32.000 0.00 0.00 0.00 2.40
373 374 8.861101 CAATTTCTCAAAGCTCTCATTCAATTC 58.139 33.333 0.00 0.00 0.00 2.17
374 375 8.365647 ACAATTTCTCAAAGCTCTCATTCAATT 58.634 29.630 0.00 0.00 0.00 2.32
375 376 7.893658 ACAATTTCTCAAAGCTCTCATTCAAT 58.106 30.769 0.00 0.00 0.00 2.57
376 377 7.281040 ACAATTTCTCAAAGCTCTCATTCAA 57.719 32.000 0.00 0.00 0.00 2.69
377 378 6.889301 ACAATTTCTCAAAGCTCTCATTCA 57.111 33.333 0.00 0.00 0.00 2.57
378 379 7.325579 GTCAACAATTTCTCAAAGCTCTCATTC 59.674 37.037 0.00 0.00 0.00 2.67
379 380 7.014038 AGTCAACAATTTCTCAAAGCTCTCATT 59.986 33.333 0.00 0.00 0.00 2.57
380 381 6.489361 AGTCAACAATTTCTCAAAGCTCTCAT 59.511 34.615 0.00 0.00 0.00 2.90
381 382 5.824624 AGTCAACAATTTCTCAAAGCTCTCA 59.175 36.000 0.00 0.00 0.00 3.27
382 383 6.311055 AGTCAACAATTTCTCAAAGCTCTC 57.689 37.500 0.00 0.00 0.00 3.20
383 384 6.460676 CCAAGTCAACAATTTCTCAAAGCTCT 60.461 38.462 0.00 0.00 0.00 4.09
384 385 5.689068 CCAAGTCAACAATTTCTCAAAGCTC 59.311 40.000 0.00 0.00 0.00 4.09
385 386 5.127682 ACCAAGTCAACAATTTCTCAAAGCT 59.872 36.000 0.00 0.00 0.00 3.74
386 387 5.351458 ACCAAGTCAACAATTTCTCAAAGC 58.649 37.500 0.00 0.00 0.00 3.51
387 388 6.563422 TGACCAAGTCAACAATTTCTCAAAG 58.437 36.000 0.00 0.00 39.78 2.77
388 389 6.522625 TGACCAAGTCAACAATTTCTCAAA 57.477 33.333 0.00 0.00 39.78 2.69
389 390 6.522625 TTGACCAAGTCAACAATTTCTCAA 57.477 33.333 6.08 0.00 45.88 3.02
401 402 4.715534 TCACCCTATTTTGACCAAGTCA 57.284 40.909 0.00 0.00 41.09 3.41
402 403 5.501156 AGATCACCCTATTTTGACCAAGTC 58.499 41.667 0.00 0.00 0.00 3.01
403 404 5.520748 AGATCACCCTATTTTGACCAAGT 57.479 39.130 0.00 0.00 0.00 3.16
404 405 8.525290 AATTAGATCACCCTATTTTGACCAAG 57.475 34.615 0.00 0.00 0.00 3.61
405 406 7.559897 GGAATTAGATCACCCTATTTTGACCAA 59.440 37.037 0.00 0.00 0.00 3.67
406 407 7.060421 GGAATTAGATCACCCTATTTTGACCA 58.940 38.462 0.00 0.00 0.00 4.02
407 408 7.060421 TGGAATTAGATCACCCTATTTTGACC 58.940 38.462 0.00 0.00 0.00 4.02
408 409 8.519799 TTGGAATTAGATCACCCTATTTTGAC 57.480 34.615 0.00 0.00 0.00 3.18
409 410 9.713684 AATTGGAATTAGATCACCCTATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
410 411 9.754382 CAATTGGAATTAGATCACCCTATTTTG 57.246 33.333 0.00 0.00 0.00 2.44
411 412 8.927411 CCAATTGGAATTAGATCACCCTATTTT 58.073 33.333 20.50 0.00 37.39 1.82
412 413 8.288812 TCCAATTGGAATTAGATCACCCTATTT 58.711 33.333 25.13 0.00 42.18 1.40
413 414 7.825709 TCCAATTGGAATTAGATCACCCTATT 58.174 34.615 25.13 0.00 42.18 1.73
414 415 7.406620 TCCAATTGGAATTAGATCACCCTAT 57.593 36.000 25.13 0.00 42.18 2.57
415 416 6.840090 TCCAATTGGAATTAGATCACCCTA 57.160 37.500 25.13 0.00 42.18 3.53
416 417 5.732331 TCCAATTGGAATTAGATCACCCT 57.268 39.130 25.13 0.00 42.18 4.34
432 433 7.959658 TCACAATCAATTGAGGTATCCAATT 57.040 32.000 14.54 0.00 42.88 2.32
433 434 7.578310 CTCACAATCAATTGAGGTATCCAAT 57.422 36.000 14.54 0.00 40.14 3.16
442 443 6.071728 AGGTAAAAGCCTCACAATCAATTGAG 60.072 38.462 14.54 3.71 36.33 3.02
443 444 5.774690 AGGTAAAAGCCTCACAATCAATTGA 59.225 36.000 11.26 11.26 36.33 2.57
444 445 6.029346 AGGTAAAAGCCTCACAATCAATTG 57.971 37.500 0.00 0.00 37.82 2.32
456 457 7.070629 ACTAAGCTATCTAGAGGTAAAAGCCT 58.929 38.462 0.00 0.00 42.53 4.58
457 458 7.292713 ACTAAGCTATCTAGAGGTAAAAGCC 57.707 40.000 0.00 0.00 0.00 4.35
483 484 9.821240 ACTTGATGAGAGGAACATCTACTATAT 57.179 33.333 0.00 0.00 42.89 0.86
484 485 9.647918 AACTTGATGAGAGGAACATCTACTATA 57.352 33.333 0.00 0.00 42.89 1.31
485 486 8.546083 AACTTGATGAGAGGAACATCTACTAT 57.454 34.615 0.00 0.00 42.89 2.12
486 487 7.962995 AACTTGATGAGAGGAACATCTACTA 57.037 36.000 0.00 0.00 42.89 1.82
487 488 6.865834 AACTTGATGAGAGGAACATCTACT 57.134 37.500 0.00 0.00 42.89 2.57
488 489 7.913674 AAAACTTGATGAGAGGAACATCTAC 57.086 36.000 0.00 0.00 42.89 2.59
510 511 5.053811 GCGGAATTGGGAAAGAAAGAAAAA 58.946 37.500 0.00 0.00 0.00 1.94
525 526 2.096406 CGAGTGCACGCGGAATTG 59.904 61.111 31.72 5.81 35.54 2.32
526 527 2.357034 ACGAGTGCACGCGGAATT 60.357 55.556 38.92 20.87 43.37 2.17
532 533 2.658707 GAGAACCACGAGTGCACGC 61.659 63.158 12.01 11.45 36.70 5.34
534 535 0.667792 GGAGAGAACCACGAGTGCAC 60.668 60.000 9.40 9.40 0.00 4.57
535 536 1.666011 GGAGAGAACCACGAGTGCA 59.334 57.895 0.00 0.00 0.00 4.57
596 597 3.524095 ACACCAAATCAGGAACCATGA 57.476 42.857 0.00 0.00 0.00 3.07
611 612 5.875224 TCTTTTTCATCACTGGATACACCA 58.125 37.500 0.00 0.00 46.17 4.17
615 616 9.167311 ACTTACATCTTTTTCATCACTGGATAC 57.833 33.333 0.00 0.00 30.87 2.24
616 617 9.739276 AACTTACATCTTTTTCATCACTGGATA 57.261 29.630 0.00 0.00 30.87 2.59
617 618 8.641498 AACTTACATCTTTTTCATCACTGGAT 57.359 30.769 0.00 0.00 0.00 3.41
618 619 8.463930 AAACTTACATCTTTTTCATCACTGGA 57.536 30.769 0.00 0.00 0.00 3.86
619 620 7.809806 GGAAACTTACATCTTTTTCATCACTGG 59.190 37.037 0.00 0.00 30.88 4.00
620 621 8.571336 AGGAAACTTACATCTTTTTCATCACTG 58.429 33.333 0.00 0.00 37.44 3.66
621 622 8.571336 CAGGAAACTTACATCTTTTTCATCACT 58.429 33.333 0.00 0.00 40.21 3.41
622 623 8.352942 ACAGGAAACTTACATCTTTTTCATCAC 58.647 33.333 0.00 0.00 40.21 3.06
623 624 8.463930 ACAGGAAACTTACATCTTTTTCATCA 57.536 30.769 0.00 0.00 40.21 3.07
624 625 9.185192 CAACAGGAAACTTACATCTTTTTCATC 57.815 33.333 0.00 0.00 40.21 2.92
625 626 7.653311 GCAACAGGAAACTTACATCTTTTTCAT 59.347 33.333 0.00 0.00 40.21 2.57
626 627 6.978080 GCAACAGGAAACTTACATCTTTTTCA 59.022 34.615 0.00 0.00 40.21 2.69
669 670 7.874528 GGAATCTTTGAAACATCTGTCCAATTT 59.125 33.333 0.00 0.00 0.00 1.82
672 673 5.832595 TGGAATCTTTGAAACATCTGTCCAA 59.167 36.000 0.00 0.00 0.00 3.53
687 688 5.534654 TGACCGATGACTTTTTGGAATCTTT 59.465 36.000 0.00 0.00 0.00 2.52
753 754 2.872245 ACCATCGGTTTCATGCTATTCG 59.128 45.455 0.00 0.00 27.29 3.34
754 755 4.576463 AGAACCATCGGTTTCATGCTATTC 59.424 41.667 0.00 0.00 46.95 1.75
755 756 4.526970 AGAACCATCGGTTTCATGCTATT 58.473 39.130 0.00 0.00 46.95 1.73
756 757 4.156455 AGAACCATCGGTTTCATGCTAT 57.844 40.909 0.00 0.00 46.95 2.97
757 758 3.627395 AGAACCATCGGTTTCATGCTA 57.373 42.857 0.00 0.00 46.95 3.49
758 759 2.496899 AGAACCATCGGTTTCATGCT 57.503 45.000 0.00 0.00 46.95 3.79
759 760 3.487544 GCTTAGAACCATCGGTTTCATGC 60.488 47.826 0.00 2.23 46.95 4.06
760 761 3.689161 TGCTTAGAACCATCGGTTTCATG 59.311 43.478 0.00 0.00 46.95 3.07
761 762 3.950397 TGCTTAGAACCATCGGTTTCAT 58.050 40.909 0.00 0.00 46.95 2.57
762 763 3.410631 TGCTTAGAACCATCGGTTTCA 57.589 42.857 0.00 0.00 46.95 2.69
763 764 3.751698 AGTTGCTTAGAACCATCGGTTTC 59.248 43.478 0.00 0.00 46.95 2.78
764 765 3.751518 AGTTGCTTAGAACCATCGGTTT 58.248 40.909 0.00 0.00 46.95 3.27
765 766 6.102075 GCAAGTTGCTTAGAACCATCGGTT 62.102 45.833 20.71 0.00 44.05 4.44
766 767 3.074412 CAAGTTGCTTAGAACCATCGGT 58.926 45.455 0.00 0.00 37.65 4.69
767 768 2.159517 GCAAGTTGCTTAGAACCATCGG 60.160 50.000 20.71 0.00 40.96 4.18
768 769 2.159517 GGCAAGTTGCTTAGAACCATCG 60.160 50.000 26.16 0.00 44.28 3.84
769 770 3.084786 AGGCAAGTTGCTTAGAACCATC 58.915 45.455 26.16 6.56 44.28 3.51
770 771 3.084786 GAGGCAAGTTGCTTAGAACCAT 58.915 45.455 26.16 2.89 44.28 3.55
771 772 2.504367 GAGGCAAGTTGCTTAGAACCA 58.496 47.619 26.16 0.00 44.28 3.67
772 773 1.464997 CGAGGCAAGTTGCTTAGAACC 59.535 52.381 26.16 8.71 44.28 3.62
773 774 2.143925 ACGAGGCAAGTTGCTTAGAAC 58.856 47.619 26.16 9.43 44.28 3.01
774 775 2.543777 ACGAGGCAAGTTGCTTAGAA 57.456 45.000 26.16 0.00 44.28 2.10
775 776 2.543777 AACGAGGCAAGTTGCTTAGA 57.456 45.000 26.16 0.00 44.28 2.10
776 777 2.350772 CCAAACGAGGCAAGTTGCTTAG 60.351 50.000 26.16 21.19 44.28 2.18
777 778 1.606668 CCAAACGAGGCAAGTTGCTTA 59.393 47.619 26.16 0.00 44.28 3.09
778 779 0.385390 CCAAACGAGGCAAGTTGCTT 59.615 50.000 26.16 20.20 44.28 3.91
779 780 0.465460 TCCAAACGAGGCAAGTTGCT 60.465 50.000 26.16 13.03 44.28 3.91
780 781 0.383949 TTCCAAACGAGGCAAGTTGC 59.616 50.000 19.87 19.87 44.08 4.17
781 782 2.861462 TTTCCAAACGAGGCAAGTTG 57.139 45.000 0.00 0.00 31.43 3.16
782 783 4.400529 AATTTTCCAAACGAGGCAAGTT 57.599 36.364 0.00 0.00 0.00 2.66
783 784 4.368315 GAAATTTTCCAAACGAGGCAAGT 58.632 39.130 0.00 0.00 0.00 3.16
784 785 4.972286 GAAATTTTCCAAACGAGGCAAG 57.028 40.909 0.00 0.00 0.00 4.01
796 797 6.254281 TCTGAAAGATCGTGGAAATTTTCC 57.746 37.500 19.39 19.39 44.56 3.13
811 812 5.989168 TGCTATTCGTTTTCAGTCTGAAAGA 59.011 36.000 23.53 17.21 45.77 2.52
812 813 6.228273 TGCTATTCGTTTTCAGTCTGAAAG 57.772 37.500 23.53 15.49 45.77 2.62
813 814 6.426633 TCATGCTATTCGTTTTCAGTCTGAAA 59.573 34.615 21.59 21.59 43.84 2.69
814 815 5.931724 TCATGCTATTCGTTTTCAGTCTGAA 59.068 36.000 11.36 11.36 34.03 3.02
815 816 5.478407 TCATGCTATTCGTTTTCAGTCTGA 58.522 37.500 0.00 0.00 0.00 3.27
816 817 5.784750 TCATGCTATTCGTTTTCAGTCTG 57.215 39.130 0.00 0.00 0.00 3.51
817 818 6.348540 GGTTTCATGCTATTCGTTTTCAGTCT 60.349 38.462 0.00 0.00 0.00 3.24
818 819 5.795441 GGTTTCATGCTATTCGTTTTCAGTC 59.205 40.000 0.00 0.00 0.00 3.51
819 820 5.616866 CGGTTTCATGCTATTCGTTTTCAGT 60.617 40.000 0.00 0.00 0.00 3.41
820 821 4.788100 CGGTTTCATGCTATTCGTTTTCAG 59.212 41.667 0.00 0.00 0.00 3.02
821 822 4.452795 TCGGTTTCATGCTATTCGTTTTCA 59.547 37.500 0.00 0.00 0.00 2.69
822 823 4.786575 GTCGGTTTCATGCTATTCGTTTTC 59.213 41.667 0.00 0.00 0.00 2.29
823 824 4.668177 CGTCGGTTTCATGCTATTCGTTTT 60.668 41.667 0.00 0.00 0.00 2.43
824 825 3.181524 CGTCGGTTTCATGCTATTCGTTT 60.182 43.478 0.00 0.00 0.00 3.60
825 826 2.347452 CGTCGGTTTCATGCTATTCGTT 59.653 45.455 0.00 0.00 0.00 3.85
826 827 1.924524 CGTCGGTTTCATGCTATTCGT 59.075 47.619 0.00 0.00 0.00 3.85
850 851 2.742053 TGATTCGAGGCAAGTTGCTTAC 59.258 45.455 26.16 16.12 44.28 2.34
882 883 4.993705 TCATTTCCTCTTGTTGTAGGGT 57.006 40.909 0.00 0.00 33.40 4.34
887 888 9.500785 TTTTTCTTTTTCATTTCCTCTTGTTGT 57.499 25.926 0.00 0.00 0.00 3.32
947 948 3.520623 AAGGCTGGTTTGCAGACTT 57.479 47.368 7.38 0.00 42.75 3.01
1033 1034 1.979155 GGAGGCAAAGGGAGGCAAC 60.979 63.158 0.00 0.00 0.00 4.17
1090 1091 3.096489 TGTTGTGGAAATTTCAGCAGC 57.904 42.857 19.49 17.27 0.00 5.25
1100 1101 1.034838 AGTGGCGCTTGTTGTGGAAA 61.035 50.000 7.64 0.00 0.00 3.13
1102 1103 2.186160 CAGTGGCGCTTGTTGTGGA 61.186 57.895 7.64 0.00 0.00 4.02
1150 1156 5.102953 TGGAACGGATCTTCTTTGATCAT 57.897 39.130 0.00 0.00 43.27 2.45
1190 1196 3.763897 GCACATAGGGATTGACTGGTTTT 59.236 43.478 0.00 0.00 0.00 2.43
1602 1907 2.634453 CAGGGCTTTCAGGTTTCCAATT 59.366 45.455 0.00 0.00 0.00 2.32
1648 1953 5.221342 CCACTGGTATTTCTCCTACTAGCAG 60.221 48.000 6.18 6.18 42.49 4.24
1669 1974 6.004574 AGTTTCTAAGATTTCCAACCTCCAC 58.995 40.000 0.00 0.00 0.00 4.02
1675 1980 6.204108 TCGGTCAAGTTTCTAAGATTTCCAAC 59.796 38.462 0.00 0.00 0.00 3.77
2515 3111 6.434028 AGCAAATTATCTTCCAAGTGCAAGTA 59.566 34.615 0.00 0.00 0.00 2.24
2798 3394 7.709149 AAACGTCCCAGTTAACTAGTATAGT 57.291 36.000 8.04 2.22 43.39 2.12
2799 3395 8.465201 AGAAAACGTCCCAGTTAACTAGTATAG 58.535 37.037 8.04 1.60 38.02 1.31
2800 3396 8.353423 AGAAAACGTCCCAGTTAACTAGTATA 57.647 34.615 8.04 0.00 33.41 1.47
2801 3397 7.237209 AGAAAACGTCCCAGTTAACTAGTAT 57.763 36.000 8.04 0.00 33.41 2.12
2802 3398 6.294731 GGAGAAAACGTCCCAGTTAACTAGTA 60.295 42.308 8.04 0.00 33.41 1.82
2803 3399 5.510349 GGAGAAAACGTCCCAGTTAACTAGT 60.510 44.000 8.04 1.33 33.41 2.57
2804 3400 4.928020 GGAGAAAACGTCCCAGTTAACTAG 59.072 45.833 8.04 0.04 33.41 2.57
2805 3401 4.344679 TGGAGAAAACGTCCCAGTTAACTA 59.655 41.667 8.04 0.00 33.41 2.24
2806 3402 3.135167 TGGAGAAAACGTCCCAGTTAACT 59.865 43.478 1.12 1.12 33.41 2.24
2831 3453 5.103000 CCAAGACTCACTAGATTACCAACG 58.897 45.833 0.00 0.00 0.00 4.10
2872 3494 5.048434 GGAATTAAGCCAGATATCCTGTTGC 60.048 44.000 0.00 0.00 41.33 4.17
3084 3706 5.212532 TCACCCTCAAAATTGTTGAATGG 57.787 39.130 4.11 4.11 0.00 3.16
3149 3771 5.829924 ACATAAGCCATAGTTCCCTTCAATG 59.170 40.000 0.00 0.00 0.00 2.82
3201 3823 2.308570 TGGGTGTATGATTTGAGCAGGT 59.691 45.455 0.00 0.00 0.00 4.00
3329 3951 6.126409 TGGAACCTGTCTTGTCTTTGTAAAT 58.874 36.000 0.00 0.00 0.00 1.40
3407 4029 3.627577 TCTCAGAAGCAAAACCACTTGTC 59.372 43.478 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.