Multiple sequence alignment - TraesCS3A01G307100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G307100 chr3A 100.000 3006 0 0 1 3006 545280348 545283353 0.000000e+00 5552.0
1 TraesCS3A01G307100 chr3A 90.559 1091 81 10 999 2082 545331370 545332445 0.000000e+00 1424.0
2 TraesCS3A01G307100 chr3A 86.917 986 121 3 995 1979 545257491 545258469 0.000000e+00 1099.0
3 TraesCS3A01G307100 chr3A 85.300 966 137 5 1016 1979 107757070 107756108 0.000000e+00 992.0
4 TraesCS3A01G307100 chr3A 93.765 417 19 4 1 410 663280083 663279667 1.180000e-173 619.0
5 TraesCS3A01G307100 chr3A 86.245 538 71 3 2454 2989 608691402 608690866 5.590000e-162 580.0
6 TraesCS3A01G307100 chr3A 96.818 220 7 0 2437 2656 545289097 545289316 4.730000e-98 368.0
7 TraesCS3A01G307100 chr3A 90.306 196 16 2 545 740 107771846 107772038 1.380000e-63 254.0
8 TraesCS3A01G307100 chr3A 93.571 140 9 0 410 549 107771431 107771570 3.040000e-50 209.0
9 TraesCS3A01G307100 chr3A 82.888 187 24 6 2254 2435 572548947 572548764 8.620000e-36 161.0
10 TraesCS3A01G307100 chr3A 78.992 238 34 10 416 643 159351127 159350896 6.710000e-32 148.0
11 TraesCS3A01G307100 chr3D 92.278 1554 85 19 537 2082 91707626 91709152 0.000000e+00 2172.0
12 TraesCS3A01G307100 chr3D 90.525 876 68 7 1210 2082 91797726 91798589 0.000000e+00 1144.0
13 TraesCS3A01G307100 chr3D 85.404 966 136 5 1016 1979 91682998 91682036 0.000000e+00 998.0
14 TraesCS3A01G307100 chr3D 91.160 181 14 2 2078 2256 91709186 91709366 8.320000e-61 244.0
15 TraesCS3A01G307100 chr3D 92.105 38 3 0 764 801 91783319 91783356 2.000000e-03 54.7
16 TraesCS3A01G307100 chr3B 92.358 1544 75 15 723 2240 141288665 141290191 0.000000e+00 2158.0
17 TraesCS3A01G307100 chr3B 90.114 1578 112 23 707 2258 141735106 141736665 0.000000e+00 2010.0
18 TraesCS3A01G307100 chr3B 90.009 1091 87 10 999 2082 141740126 141741201 0.000000e+00 1391.0
19 TraesCS3A01G307100 chr3B 91.958 572 36 7 2436 3006 792766766 792766204 0.000000e+00 793.0
20 TraesCS3A01G307100 chr3B 89.394 66 3 4 738 801 141739892 141739955 2.480000e-11 80.5
21 TraesCS3A01G307100 chr5A 97.544 570 14 0 2437 3006 584448281 584447712 0.000000e+00 976.0
22 TraesCS3A01G307100 chr7A 94.571 571 28 3 2437 3006 70143226 70143794 0.000000e+00 880.0
23 TraesCS3A01G307100 chr7A 93.750 416 20 4 1 412 69580518 69580105 1.180000e-173 619.0
24 TraesCS3A01G307100 chr7A 86.237 574 70 9 2437 3006 129281101 129280533 5.510000e-172 614.0
25 TraesCS3A01G307100 chr7A 92.941 425 22 5 1 417 69553215 69552791 1.980000e-171 612.0
26 TraesCS3A01G307100 chr7A 92.806 417 22 5 1 410 43533410 43532995 5.550000e-167 597.0
27 TraesCS3A01G307100 chrUn 91.944 571 36 6 2436 3006 124857739 124858299 0.000000e+00 791.0
28 TraesCS3A01G307100 chr5D 90.642 545 44 4 2465 3006 30680996 30680456 0.000000e+00 717.0
29 TraesCS3A01G307100 chr7B 88.699 584 59 7 2423 3004 632157938 632158516 0.000000e+00 706.0
30 TraesCS3A01G307100 chr7B 93.269 416 19 5 1 410 275464126 275464538 3.310000e-169 604.0
31 TraesCS3A01G307100 chr4B 87.523 545 63 5 2465 3006 653305522 653306064 2.540000e-175 625.0
32 TraesCS3A01G307100 chr4A 93.494 415 22 3 1 410 319198455 319198869 1.980000e-171 612.0
33 TraesCS3A01G307100 chr4A 82.065 184 23 7 2258 2435 682993214 682993035 6.710000e-32 148.0
34 TraesCS3A01G307100 chr2A 93.269 416 20 5 1 410 569287176 569287589 9.220000e-170 606.0
35 TraesCS3A01G307100 chr1A 93.269 416 20 5 1 410 469648277 469648690 9.220000e-170 606.0
36 TraesCS3A01G307100 chr1A 93.046 417 20 6 1 410 489642928 489643342 4.290000e-168 601.0
37 TraesCS3A01G307100 chr1A 82.796 186 23 8 2255 2435 441837911 441837730 1.120000e-34 158.0
38 TraesCS3A01G307100 chr7D 86.188 181 22 2 2257 2435 599195828 599196007 3.060000e-45 193.0
39 TraesCS3A01G307100 chr6A 82.065 184 23 7 2258 2435 553764598 553764777 6.710000e-32 148.0
40 TraesCS3A01G307100 chr2B 79.231 130 20 3 469 594 769239063 769238937 1.920000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G307100 chr3A 545280348 545283353 3005 False 5552.0 5552 100.0000 1 3006 1 chr3A.!!$F2 3005
1 TraesCS3A01G307100 chr3A 545331370 545332445 1075 False 1424.0 1424 90.5590 999 2082 1 chr3A.!!$F4 1083
2 TraesCS3A01G307100 chr3A 545257491 545258469 978 False 1099.0 1099 86.9170 995 1979 1 chr3A.!!$F1 984
3 TraesCS3A01G307100 chr3A 107756108 107757070 962 True 992.0 992 85.3000 1016 1979 1 chr3A.!!$R1 963
4 TraesCS3A01G307100 chr3A 608690866 608691402 536 True 580.0 580 86.2450 2454 2989 1 chr3A.!!$R4 535
5 TraesCS3A01G307100 chr3A 107771431 107772038 607 False 231.5 254 91.9385 410 740 2 chr3A.!!$F5 330
6 TraesCS3A01G307100 chr3D 91707626 91709366 1740 False 1208.0 2172 91.7190 537 2256 2 chr3D.!!$F3 1719
7 TraesCS3A01G307100 chr3D 91797726 91798589 863 False 1144.0 1144 90.5250 1210 2082 1 chr3D.!!$F2 872
8 TraesCS3A01G307100 chr3D 91682036 91682998 962 True 998.0 998 85.4040 1016 1979 1 chr3D.!!$R1 963
9 TraesCS3A01G307100 chr3B 141288665 141290191 1526 False 2158.0 2158 92.3580 723 2240 1 chr3B.!!$F1 1517
10 TraesCS3A01G307100 chr3B 141735106 141741201 6095 False 1160.5 2010 89.8390 707 2258 3 chr3B.!!$F2 1551
11 TraesCS3A01G307100 chr3B 792766204 792766766 562 True 793.0 793 91.9580 2436 3006 1 chr3B.!!$R1 570
12 TraesCS3A01G307100 chr5A 584447712 584448281 569 True 976.0 976 97.5440 2437 3006 1 chr5A.!!$R1 569
13 TraesCS3A01G307100 chr7A 70143226 70143794 568 False 880.0 880 94.5710 2437 3006 1 chr7A.!!$F1 569
14 TraesCS3A01G307100 chr7A 129280533 129281101 568 True 614.0 614 86.2370 2437 3006 1 chr7A.!!$R4 569
15 TraesCS3A01G307100 chrUn 124857739 124858299 560 False 791.0 791 91.9440 2436 3006 1 chrUn.!!$F1 570
16 TraesCS3A01G307100 chr5D 30680456 30680996 540 True 717.0 717 90.6420 2465 3006 1 chr5D.!!$R1 541
17 TraesCS3A01G307100 chr7B 632157938 632158516 578 False 706.0 706 88.6990 2423 3004 1 chr7B.!!$F2 581
18 TraesCS3A01G307100 chr4B 653305522 653306064 542 False 625.0 625 87.5230 2465 3006 1 chr4B.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 503 0.106708 AGGTGATGTGCGTTCAGTGT 59.893 50.0 0.0 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2341 2522 0.253044 TGCAGGAGATACAACAGGCC 59.747 55.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.785499 CGTCGACCTCGTCAGCGA 61.785 66.667 10.58 0.00 45.79 4.93
18 19 2.202324 GTCGACCTCGTCAGCGAC 60.202 66.667 3.51 0.00 44.83 5.19
27 28 2.799916 GTCAGCGACGACGACACC 60.800 66.667 12.29 0.00 42.66 4.16
28 29 4.379143 TCAGCGACGACGACACCG 62.379 66.667 12.29 0.53 42.66 4.94
48 49 4.373116 GGCCAGTGAAGACGGCGA 62.373 66.667 16.62 0.00 40.54 5.54
49 50 3.112709 GCCAGTGAAGACGGCGAC 61.113 66.667 16.62 7.87 33.90 5.19
96 97 3.047877 CGCGCGGGAGGAGTTTTT 61.048 61.111 24.84 0.00 0.00 1.94
144 145 4.665833 AAAACTGGGTCTTTTAAGTGGC 57.334 40.909 0.00 0.00 0.00 5.01
145 146 2.287977 ACTGGGTCTTTTAAGTGGCC 57.712 50.000 0.00 0.00 0.00 5.36
146 147 1.165270 CTGGGTCTTTTAAGTGGCCG 58.835 55.000 0.00 0.00 0.00 6.13
147 148 0.475044 TGGGTCTTTTAAGTGGCCGT 59.525 50.000 0.00 0.00 0.00 5.68
148 149 0.879090 GGGTCTTTTAAGTGGCCGTG 59.121 55.000 0.00 0.00 0.00 4.94
149 150 0.879090 GGTCTTTTAAGTGGCCGTGG 59.121 55.000 0.00 0.00 0.00 4.94
150 151 1.543871 GGTCTTTTAAGTGGCCGTGGA 60.544 52.381 0.00 0.00 0.00 4.02
151 152 2.223745 GTCTTTTAAGTGGCCGTGGAA 58.776 47.619 0.00 0.00 0.00 3.53
152 153 2.619646 GTCTTTTAAGTGGCCGTGGAAA 59.380 45.455 0.00 0.00 0.00 3.13
153 154 2.619646 TCTTTTAAGTGGCCGTGGAAAC 59.380 45.455 0.00 0.00 0.00 2.78
154 155 2.351706 TTTAAGTGGCCGTGGAAACT 57.648 45.000 0.00 0.00 0.00 2.66
155 156 1.600023 TTAAGTGGCCGTGGAAACTG 58.400 50.000 0.00 0.00 0.00 3.16
156 157 0.250553 TAAGTGGCCGTGGAAACTGG 60.251 55.000 0.00 0.00 0.00 4.00
157 158 2.976494 AAGTGGCCGTGGAAACTGGG 62.976 60.000 0.00 0.00 0.00 4.45
161 162 4.636435 CCGTGGAAACTGGGCCGT 62.636 66.667 0.00 0.00 0.00 5.68
162 163 2.593436 CGTGGAAACTGGGCCGTT 60.593 61.111 0.00 3.25 0.00 4.44
163 164 2.190841 CGTGGAAACTGGGCCGTTT 61.191 57.895 20.89 20.89 39.63 3.60
164 165 1.730451 CGTGGAAACTGGGCCGTTTT 61.730 55.000 21.41 13.34 37.24 2.43
165 166 0.249280 GTGGAAACTGGGCCGTTTTG 60.249 55.000 21.41 3.95 37.24 2.44
166 167 0.684805 TGGAAACTGGGCCGTTTTGT 60.685 50.000 21.41 5.98 37.24 2.83
167 168 0.249280 GGAAACTGGGCCGTTTTGTG 60.249 55.000 21.41 0.90 37.24 3.33
168 169 0.249280 GAAACTGGGCCGTTTTGTGG 60.249 55.000 21.41 0.00 37.24 4.17
175 176 3.666253 CCGTTTTGTGGCCGACCC 61.666 66.667 0.00 0.00 33.59 4.46
176 177 3.666253 CGTTTTGTGGCCGACCCC 61.666 66.667 0.00 0.00 33.59 4.95
177 178 2.203437 GTTTTGTGGCCGACCCCT 60.203 61.111 0.00 0.00 33.59 4.79
178 179 1.073548 GTTTTGTGGCCGACCCCTA 59.926 57.895 0.00 0.00 33.59 3.53
179 180 0.323087 GTTTTGTGGCCGACCCCTAT 60.323 55.000 0.00 0.00 33.59 2.57
180 181 1.065272 GTTTTGTGGCCGACCCCTATA 60.065 52.381 0.00 0.00 33.59 1.31
181 182 1.513858 TTTGTGGCCGACCCCTATAT 58.486 50.000 0.00 0.00 33.59 0.86
182 183 2.402182 TTGTGGCCGACCCCTATATA 57.598 50.000 0.00 0.00 33.59 0.86
183 184 2.634639 TGTGGCCGACCCCTATATAT 57.365 50.000 0.00 0.00 33.59 0.86
184 185 2.184533 TGTGGCCGACCCCTATATATG 58.815 52.381 0.00 0.00 33.59 1.78
185 186 2.185387 GTGGCCGACCCCTATATATGT 58.815 52.381 0.00 0.00 33.59 2.29
186 187 2.570302 GTGGCCGACCCCTATATATGTT 59.430 50.000 0.00 0.00 33.59 2.71
187 188 3.008704 GTGGCCGACCCCTATATATGTTT 59.991 47.826 0.00 0.00 33.59 2.83
188 189 3.653836 TGGCCGACCCCTATATATGTTTT 59.346 43.478 0.00 0.00 33.59 2.43
189 190 4.845225 TGGCCGACCCCTATATATGTTTTA 59.155 41.667 0.00 0.00 33.59 1.52
190 191 5.489637 TGGCCGACCCCTATATATGTTTTAT 59.510 40.000 0.00 0.00 33.59 1.40
191 192 5.820947 GGCCGACCCCTATATATGTTTTATG 59.179 44.000 0.00 0.00 0.00 1.90
192 193 6.412214 GCCGACCCCTATATATGTTTTATGT 58.588 40.000 0.00 0.00 0.00 2.29
193 194 6.882678 GCCGACCCCTATATATGTTTTATGTT 59.117 38.462 0.00 0.00 0.00 2.71
194 195 7.392393 GCCGACCCCTATATATGTTTTATGTTT 59.608 37.037 0.00 0.00 0.00 2.83
195 196 9.292195 CCGACCCCTATATATGTTTTATGTTTT 57.708 33.333 0.00 0.00 0.00 2.43
264 265 2.389962 TTTTATTCTCGTCCACCCCG 57.610 50.000 0.00 0.00 0.00 5.73
265 266 0.538118 TTTATTCTCGTCCACCCCGG 59.462 55.000 0.00 0.00 0.00 5.73
266 267 0.324552 TTATTCTCGTCCACCCCGGA 60.325 55.000 0.73 0.00 43.61 5.14
273 274 2.605295 TCCACCCCGGACACGATT 60.605 61.111 0.73 0.00 44.60 3.34
274 275 2.218454 TCCACCCCGGACACGATTT 61.218 57.895 0.73 0.00 44.60 2.17
275 276 2.038269 CCACCCCGGACACGATTTG 61.038 63.158 0.73 0.00 44.60 2.32
276 277 2.038269 CACCCCGGACACGATTTGG 61.038 63.158 0.73 0.00 44.60 3.28
277 278 2.437716 CCCCGGACACGATTTGGG 60.438 66.667 0.73 0.00 44.60 4.12
278 279 2.437716 CCCGGACACGATTTGGGG 60.438 66.667 0.73 0.00 44.60 4.96
279 280 2.349755 CCGGACACGATTTGGGGT 59.650 61.111 0.00 0.00 44.60 4.95
280 281 2.038269 CCGGACACGATTTGGGGTG 61.038 63.158 0.00 0.00 44.60 4.61
281 282 2.686816 CGGACACGATTTGGGGTGC 61.687 63.158 0.00 0.00 44.60 5.01
282 283 2.686816 GGACACGATTTGGGGTGCG 61.687 63.158 0.00 0.00 37.68 5.34
283 284 2.671619 ACACGATTTGGGGTGCGG 60.672 61.111 0.00 0.00 37.68 5.69
284 285 4.114997 CACGATTTGGGGTGCGGC 62.115 66.667 0.00 0.00 0.00 6.53
287 288 3.758931 GATTTGGGGTGCGGCCAC 61.759 66.667 2.24 0.00 42.43 5.01
314 315 3.490759 GCACGCACGACCCATCTG 61.491 66.667 0.00 0.00 0.00 2.90
315 316 2.261361 CACGCACGACCCATCTGA 59.739 61.111 0.00 0.00 0.00 3.27
316 317 2.094659 CACGCACGACCCATCTGAC 61.095 63.158 0.00 0.00 0.00 3.51
317 318 2.261361 CGCACGACCCATCTGACA 59.739 61.111 0.00 0.00 0.00 3.58
318 319 1.374125 CGCACGACCCATCTGACAA 60.374 57.895 0.00 0.00 0.00 3.18
319 320 0.948623 CGCACGACCCATCTGACAAA 60.949 55.000 0.00 0.00 0.00 2.83
320 321 0.798776 GCACGACCCATCTGACAAAG 59.201 55.000 0.00 0.00 0.00 2.77
321 322 0.798776 CACGACCCATCTGACAAAGC 59.201 55.000 0.00 0.00 0.00 3.51
322 323 0.321653 ACGACCCATCTGACAAAGCC 60.322 55.000 0.00 0.00 0.00 4.35
323 324 1.361668 CGACCCATCTGACAAAGCCG 61.362 60.000 0.00 0.00 0.00 5.52
324 325 1.002134 ACCCATCTGACAAAGCCGG 60.002 57.895 0.00 0.00 0.00 6.13
325 326 1.299648 CCCATCTGACAAAGCCGGA 59.700 57.895 5.05 0.00 0.00 5.14
326 327 1.026718 CCCATCTGACAAAGCCGGAC 61.027 60.000 5.05 0.00 0.00 4.79
327 328 0.321564 CCATCTGACAAAGCCGGACA 60.322 55.000 5.05 0.00 0.00 4.02
328 329 0.798776 CATCTGACAAAGCCGGACAC 59.201 55.000 5.05 0.00 0.00 3.67
329 330 0.670546 ATCTGACAAAGCCGGACACG 60.671 55.000 5.05 0.00 40.55 4.49
373 374 0.459899 GGACAAAATCCGGCCAATCC 59.540 55.000 2.24 0.00 37.88 3.01
391 392 3.646554 GGACGTCCGTTTTGGGTC 58.353 61.111 20.85 0.00 38.76 4.46
392 393 2.312436 GGACGTCCGTTTTGGGTCG 61.312 63.158 20.85 0.00 39.84 4.79
393 394 1.592400 GACGTCCGTTTTGGGTCGT 60.592 57.895 3.51 3.71 45.74 4.34
394 395 1.824272 GACGTCCGTTTTGGGTCGTG 61.824 60.000 3.51 0.00 44.17 4.35
395 396 2.635338 GTCCGTTTTGGGTCGTGC 59.365 61.111 0.00 0.00 38.76 5.34
396 397 2.968156 TCCGTTTTGGGTCGTGCG 60.968 61.111 0.00 0.00 38.76 5.34
397 398 4.020378 CCGTTTTGGGTCGTGCGG 62.020 66.667 0.00 0.00 0.00 5.69
398 399 3.273834 CGTTTTGGGTCGTGCGGT 61.274 61.111 0.00 0.00 0.00 5.68
399 400 2.330041 GTTTTGGGTCGTGCGGTG 59.670 61.111 0.00 0.00 0.00 4.94
400 401 2.902846 TTTTGGGTCGTGCGGTGG 60.903 61.111 0.00 0.00 0.00 4.61
401 402 3.402095 TTTTGGGTCGTGCGGTGGA 62.402 57.895 0.00 0.00 0.00 4.02
402 403 3.818121 TTTGGGTCGTGCGGTGGAG 62.818 63.158 0.00 0.00 0.00 3.86
404 405 4.309950 GGGTCGTGCGGTGGAGTT 62.310 66.667 0.00 0.00 0.00 3.01
405 406 3.041940 GGTCGTGCGGTGGAGTTG 61.042 66.667 0.00 0.00 0.00 3.16
406 407 3.041940 GTCGTGCGGTGGAGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
407 408 4.980805 TCGTGCGGTGGAGTTGGC 62.981 66.667 0.00 0.00 0.00 4.52
415 416 1.968540 GTGGAGTTGGCCTCACTGC 60.969 63.158 16.94 16.94 42.40 4.40
447 448 4.263018 TCAAGTCTCAGACCTGACATTG 57.737 45.455 1.61 0.00 35.46 2.82
448 449 3.007290 TCAAGTCTCAGACCTGACATTGG 59.993 47.826 1.61 0.00 35.46 3.16
493 494 5.689383 TTTCAGACTTTTAGGTGATGTGC 57.311 39.130 0.00 0.00 0.00 4.57
494 495 3.325870 TCAGACTTTTAGGTGATGTGCG 58.674 45.455 0.00 0.00 0.00 5.34
495 496 3.067106 CAGACTTTTAGGTGATGTGCGT 58.933 45.455 0.00 0.00 0.00 5.24
496 497 3.498397 CAGACTTTTAGGTGATGTGCGTT 59.502 43.478 0.00 0.00 0.00 4.84
497 498 3.746492 AGACTTTTAGGTGATGTGCGTTC 59.254 43.478 0.00 0.00 0.00 3.95
498 499 3.472652 ACTTTTAGGTGATGTGCGTTCA 58.527 40.909 0.00 0.00 0.00 3.18
499 500 3.498397 ACTTTTAGGTGATGTGCGTTCAG 59.502 43.478 0.00 0.00 0.00 3.02
500 501 2.831685 TTAGGTGATGTGCGTTCAGT 57.168 45.000 0.00 0.00 0.00 3.41
501 502 2.078849 TAGGTGATGTGCGTTCAGTG 57.921 50.000 0.00 0.00 0.00 3.66
502 503 0.106708 AGGTGATGTGCGTTCAGTGT 59.893 50.000 0.00 0.00 0.00 3.55
503 504 0.235665 GGTGATGTGCGTTCAGTGTG 59.764 55.000 0.00 0.00 0.00 3.82
504 505 0.235665 GTGATGTGCGTTCAGTGTGG 59.764 55.000 0.00 0.00 0.00 4.17
505 506 0.884259 TGATGTGCGTTCAGTGTGGG 60.884 55.000 0.00 0.00 0.00 4.61
506 507 0.602638 GATGTGCGTTCAGTGTGGGA 60.603 55.000 0.00 0.00 0.00 4.37
507 508 0.603707 ATGTGCGTTCAGTGTGGGAG 60.604 55.000 0.00 0.00 0.00 4.30
508 509 1.069090 GTGCGTTCAGTGTGGGAGA 59.931 57.895 0.00 0.00 0.00 3.71
509 510 1.069090 TGCGTTCAGTGTGGGAGAC 59.931 57.895 0.00 0.00 0.00 3.36
510 511 2.022129 GCGTTCAGTGTGGGAGACG 61.022 63.158 0.00 0.00 0.00 4.18
511 512 1.362717 CGTTCAGTGTGGGAGACGT 59.637 57.895 0.00 0.00 0.00 4.34
512 513 0.249322 CGTTCAGTGTGGGAGACGTT 60.249 55.000 0.00 0.00 0.00 3.99
513 514 1.499049 GTTCAGTGTGGGAGACGTTC 58.501 55.000 0.00 0.00 0.00 3.95
514 515 0.391597 TTCAGTGTGGGAGACGTTCC 59.608 55.000 7.90 7.90 46.00 3.62
530 531 5.338614 ACGTTCCGTCAACTATGAAAAAG 57.661 39.130 0.00 0.00 33.69 2.27
531 532 5.051816 ACGTTCCGTCAACTATGAAAAAGA 58.948 37.500 0.00 0.00 33.69 2.52
532 533 5.050567 ACGTTCCGTCAACTATGAAAAAGAC 60.051 40.000 0.00 0.00 33.69 3.01
533 534 5.050634 CGTTCCGTCAACTATGAAAAAGACA 60.051 40.000 0.00 0.00 37.30 3.41
534 535 6.347402 CGTTCCGTCAACTATGAAAAAGACAT 60.347 38.462 0.00 0.00 37.30 3.06
535 536 7.148705 CGTTCCGTCAACTATGAAAAAGACATA 60.149 37.037 0.00 0.00 37.30 2.29
536 537 8.665685 GTTCCGTCAACTATGAAAAAGACATAT 58.334 33.333 0.00 0.00 37.30 1.78
537 538 8.196802 TCCGTCAACTATGAAAAAGACATATG 57.803 34.615 0.00 0.00 37.30 1.78
538 539 7.822334 TCCGTCAACTATGAAAAAGACATATGT 59.178 33.333 8.43 8.43 37.30 2.29
539 540 7.904977 CCGTCAACTATGAAAAAGACATATGTG 59.095 37.037 14.43 0.00 37.30 3.21
540 541 8.655970 CGTCAACTATGAAAAAGACATATGTGA 58.344 33.333 14.43 0.00 37.30 3.58
541 542 9.760660 GTCAACTATGAAAAAGACATATGTGAC 57.239 33.333 14.43 5.41 37.30 3.67
542 543 8.655970 TCAACTATGAAAAAGACATATGTGACG 58.344 33.333 14.43 0.00 30.99 4.35
547 548 8.771920 ATGAAAAAGACATATGTGACGACTTA 57.228 30.769 14.43 0.00 0.00 2.24
569 570 8.099537 ACTTAGTCAATCTCAAGATGATGTGTT 58.900 33.333 0.00 0.00 34.49 3.32
574 575 4.025040 TCTCAAGATGATGTGTTGGCTT 57.975 40.909 0.00 0.00 32.25 4.35
590 594 1.137086 GGCTTAATCTCTCGGTGCTCA 59.863 52.381 0.00 0.00 0.00 4.26
593 597 4.501571 GGCTTAATCTCTCGGTGCTCATAA 60.502 45.833 0.00 0.00 0.00 1.90
595 599 3.742433 AATCTCTCGGTGCTCATAAGG 57.258 47.619 0.00 0.00 0.00 2.69
601 605 2.693591 CTCGGTGCTCATAAGGGTAGAA 59.306 50.000 0.00 0.00 0.00 2.10
608 614 6.239600 GGTGCTCATAAGGGTAGAATGTATGA 60.240 42.308 0.00 0.00 31.95 2.15
611 617 7.071196 TGCTCATAAGGGTAGAATGTATGAGTT 59.929 37.037 16.30 0.00 45.15 3.01
613 619 8.547481 TCATAAGGGTAGAATGTATGAGTTCA 57.453 34.615 0.00 0.00 29.93 3.18
621 627 9.429359 GGTAGAATGTATGAGTTCATTCATAGG 57.571 37.037 12.64 0.00 46.89 2.57
630 636 7.055667 TGAGTTCATTCATAGGGATGAGTAC 57.944 40.000 0.00 0.00 43.03 2.73
635 641 6.762333 TCATTCATAGGGATGAGTACATGTG 58.238 40.000 9.11 0.00 43.03 3.21
636 642 6.327365 TCATTCATAGGGATGAGTACATGTGT 59.673 38.462 9.11 0.00 43.03 3.72
642 648 3.809832 GGGATGAGTACATGTGTGTATGC 59.190 47.826 9.11 3.52 42.43 3.14
643 649 3.490896 GGATGAGTACATGTGTGTATGCG 59.509 47.826 9.11 0.00 42.43 4.73
644 650 3.586100 TGAGTACATGTGTGTATGCGT 57.414 42.857 9.11 0.00 42.43 5.24
648 654 5.006153 AGTACATGTGTGTATGCGTATGT 57.994 39.130 9.11 0.00 42.43 2.29
649 655 6.139048 AGTACATGTGTGTATGCGTATGTA 57.861 37.500 9.11 0.00 42.43 2.29
650 656 6.745116 AGTACATGTGTGTATGCGTATGTAT 58.255 36.000 9.11 0.00 42.43 2.29
651 657 5.905480 ACATGTGTGTATGCGTATGTATG 57.095 39.130 0.00 0.00 36.63 2.39
652 658 5.596845 ACATGTGTGTATGCGTATGTATGA 58.403 37.500 0.00 0.00 36.63 2.15
653 659 6.223120 ACATGTGTGTATGCGTATGTATGAT 58.777 36.000 0.00 0.00 36.63 2.45
654 660 6.366061 ACATGTGTGTATGCGTATGTATGATC 59.634 38.462 0.00 0.00 36.63 2.92
655 661 4.915085 TGTGTGTATGCGTATGTATGATCG 59.085 41.667 0.00 0.00 0.00 3.69
656 662 4.915667 GTGTGTATGCGTATGTATGATCGT 59.084 41.667 0.00 0.00 0.00 3.73
657 663 5.059343 GTGTGTATGCGTATGTATGATCGTC 59.941 44.000 0.00 0.00 0.00 4.20
658 664 5.151389 GTGTATGCGTATGTATGATCGTCA 58.849 41.667 0.00 0.00 0.00 4.35
659 665 5.059343 GTGTATGCGTATGTATGATCGTCAC 59.941 44.000 0.00 0.00 0.00 3.67
682 688 1.413118 AAAAAGTCAGGGCAAGTGGG 58.587 50.000 0.00 0.00 0.00 4.61
683 689 0.555769 AAAAGTCAGGGCAAGTGGGA 59.444 50.000 0.00 0.00 0.00 4.37
684 690 0.111253 AAAGTCAGGGCAAGTGGGAG 59.889 55.000 0.00 0.00 0.00 4.30
686 692 1.197430 AGTCAGGGCAAGTGGGAGAG 61.197 60.000 0.00 0.00 0.00 3.20
688 694 1.920325 CAGGGCAAGTGGGAGAGGA 60.920 63.158 0.00 0.00 0.00 3.71
689 695 1.920835 AGGGCAAGTGGGAGAGGAC 60.921 63.158 0.00 0.00 0.00 3.85
690 696 2.266055 GGCAAGTGGGAGAGGACG 59.734 66.667 0.00 0.00 0.00 4.79
691 697 2.435059 GCAAGTGGGAGAGGACGC 60.435 66.667 0.00 0.00 0.00 5.19
692 698 2.125912 CAAGTGGGAGAGGACGCG 60.126 66.667 3.53 3.53 0.00 6.01
693 699 2.600769 AAGTGGGAGAGGACGCGT 60.601 61.111 13.85 13.85 0.00 6.01
694 700 1.303888 AAGTGGGAGAGGACGCGTA 60.304 57.895 13.97 0.00 0.00 4.42
695 701 1.593296 AAGTGGGAGAGGACGCGTAC 61.593 60.000 15.35 15.35 0.00 3.67
696 702 2.045131 GTGGGAGAGGACGCGTACT 61.045 63.158 27.28 27.28 0.00 2.73
697 703 2.044555 TGGGAGAGGACGCGTACTG 61.045 63.158 32.41 0.00 0.00 2.74
704 710 4.164252 GACGCGTACTGGTCCAAG 57.836 61.111 13.97 0.00 0.00 3.61
705 711 1.582968 GACGCGTACTGGTCCAAGA 59.417 57.895 13.97 0.00 0.00 3.02
709 715 1.467035 CGCGTACTGGTCCAAGAGTAC 60.467 57.143 0.00 9.03 40.74 2.73
720 726 4.430007 GTCCAAGAGTACGTATTGATGCA 58.570 43.478 8.61 0.00 0.00 3.96
728 734 5.182487 AGTACGTATTGATGCACAATCCAA 58.818 37.500 14.94 4.37 44.77 3.53
810 824 1.202065 CGGCATTGAAGTGTGGAATCG 60.202 52.381 0.00 0.00 0.00 3.34
856 870 3.840078 TGTCACAGATCCAAGATCCAGAA 59.160 43.478 0.99 0.00 0.00 3.02
859 873 4.718276 TCACAGATCCAAGATCCAGAATGA 59.282 41.667 0.99 0.00 39.69 2.57
997 1012 3.795101 CGTAATTCCGTATCACACTCACC 59.205 47.826 0.00 0.00 0.00 4.02
1003 1018 1.668419 GTATCACACTCACCCCATGC 58.332 55.000 0.00 0.00 0.00 4.06
1149 1164 1.870055 GCGTGGAGTGGAAGGACGTA 61.870 60.000 0.00 0.00 32.66 3.57
1150 1165 0.815734 CGTGGAGTGGAAGGACGTAT 59.184 55.000 0.00 0.00 0.00 3.06
1200 1215 4.509737 GTCTACAGGCCGGCGTCC 62.510 72.222 20.79 5.74 0.00 4.79
1982 2110 0.672401 CAGGCGGTTCGTGTACCAAT 60.672 55.000 0.00 0.00 38.12 3.16
1998 2126 3.825160 AATGTGACACGCCCGCTGT 62.825 57.895 0.22 0.00 0.00 4.40
2053 2188 9.317936 TCTAATGCTACTGTTTATGTTCTGATG 57.682 33.333 0.00 0.00 0.00 3.07
2088 2261 3.444916 TGTTCTGAACTTCTGTGTCGAC 58.555 45.455 20.18 9.11 0.00 4.20
2258 2439 4.048241 TCACAGACAATGTACAACACGA 57.952 40.909 0.00 0.00 41.41 4.35
2259 2440 4.048504 TCACAGACAATGTACAACACGAG 58.951 43.478 0.00 0.00 41.41 4.18
2260 2441 4.048504 CACAGACAATGTACAACACGAGA 58.951 43.478 0.00 0.00 41.41 4.04
2261 2442 4.506288 CACAGACAATGTACAACACGAGAA 59.494 41.667 0.00 0.00 41.41 2.87
2263 2444 5.758296 ACAGACAATGTACAACACGAGAAAT 59.242 36.000 0.00 0.00 41.60 2.17
2264 2445 6.073369 CAGACAATGTACAACACGAGAAATG 58.927 40.000 0.00 0.00 0.00 2.32
2266 2447 6.650807 AGACAATGTACAACACGAGAAATGAT 59.349 34.615 0.00 0.00 0.00 2.45
2268 2449 6.204688 ACAATGTACAACACGAGAAATGATGT 59.795 34.615 0.00 0.00 36.99 3.06
2269 2450 6.801539 ATGTACAACACGAGAAATGATGTT 57.198 33.333 0.00 0.00 35.10 2.71
2272 2453 7.149307 TGTACAACACGAGAAATGATGTTCTA 58.851 34.615 0.00 0.00 37.98 2.10
2274 2455 5.408604 ACAACACGAGAAATGATGTTCTACC 59.591 40.000 0.00 0.00 37.98 3.18
2275 2456 5.147330 ACACGAGAAATGATGTTCTACCA 57.853 39.130 0.00 0.00 37.98 3.25
2277 2458 5.582269 ACACGAGAAATGATGTTCTACCATG 59.418 40.000 0.00 0.00 37.98 3.66
2278 2459 4.572389 ACGAGAAATGATGTTCTACCATGC 59.428 41.667 0.00 0.00 37.98 4.06
2279 2460 4.571984 CGAGAAATGATGTTCTACCATGCA 59.428 41.667 0.00 0.00 37.98 3.96
2280 2461 5.503031 CGAGAAATGATGTTCTACCATGCAC 60.503 44.000 0.00 0.00 37.98 4.57
2281 2462 4.333649 AGAAATGATGTTCTACCATGCACG 59.666 41.667 0.00 0.00 36.06 5.34
2282 2463 2.022764 TGATGTTCTACCATGCACGG 57.977 50.000 0.00 0.00 0.00 4.94
2283 2464 1.299541 GATGTTCTACCATGCACGGG 58.700 55.000 2.80 3.91 0.00 5.28
2284 2465 0.908910 ATGTTCTACCATGCACGGGA 59.091 50.000 12.94 0.00 0.00 5.14
2285 2466 0.908910 TGTTCTACCATGCACGGGAT 59.091 50.000 12.94 0.00 0.00 3.85
2287 2468 2.703536 TGTTCTACCATGCACGGGATAT 59.296 45.455 12.94 0.00 0.00 1.63
2288 2469 3.067106 GTTCTACCATGCACGGGATATG 58.933 50.000 12.94 0.00 0.00 1.78
2289 2470 1.001974 TCTACCATGCACGGGATATGC 59.998 52.381 12.94 0.00 43.68 3.14
2290 2471 0.036164 TACCATGCACGGGATATGCC 59.964 55.000 12.94 2.51 42.69 4.40
2291 2472 2.327343 CCATGCACGGGATATGCCG 61.327 63.158 31.32 31.32 42.69 5.69
2292 2473 1.597854 CATGCACGGGATATGCCGT 60.598 57.895 32.73 32.73 42.69 5.68
2338 2519 7.962964 TTTGGAGATTCGGACATATATTGAC 57.037 36.000 0.00 0.00 0.00 3.18
2339 2520 6.037786 TGGAGATTCGGACATATATTGACC 57.962 41.667 0.00 0.00 36.88 4.02
2341 2522 6.102663 GGAGATTCGGACATATATTGACCTG 58.897 44.000 0.00 0.00 37.93 4.00
2342 2523 6.042638 AGATTCGGACATATATTGACCTGG 57.957 41.667 0.00 0.00 37.93 4.45
2343 2524 3.678056 TCGGACATATATTGACCTGGC 57.322 47.619 0.00 0.00 37.93 4.85
2344 2525 2.301870 TCGGACATATATTGACCTGGCC 59.698 50.000 0.00 0.00 37.93 5.36
2345 2526 2.303022 CGGACATATATTGACCTGGCCT 59.697 50.000 3.32 0.00 37.93 5.19
2346 2527 3.679389 GGACATATATTGACCTGGCCTG 58.321 50.000 3.32 2.54 37.22 4.85
2347 2528 3.073062 GGACATATATTGACCTGGCCTGT 59.927 47.826 3.32 0.00 37.22 4.00
2348 2529 4.446311 GGACATATATTGACCTGGCCTGTT 60.446 45.833 3.32 0.00 37.22 3.16
2351 2821 5.131977 ACATATATTGACCTGGCCTGTTGTA 59.868 40.000 3.32 0.00 0.00 2.41
2352 2822 4.796110 ATATTGACCTGGCCTGTTGTAT 57.204 40.909 3.32 0.00 0.00 2.29
2356 2826 0.912486 ACCTGGCCTGTTGTATCTCC 59.088 55.000 3.32 0.00 0.00 3.71
2357 2827 1.207791 CCTGGCCTGTTGTATCTCCT 58.792 55.000 3.32 0.00 0.00 3.69
2360 2830 0.253044 GGCCTGTTGTATCTCCTGCA 59.747 55.000 0.00 0.00 0.00 4.41
2369 2839 4.486125 TGTATCTCCTGCATGTTGCTTA 57.514 40.909 0.75 0.00 45.31 3.09
2372 2842 5.887598 TGTATCTCCTGCATGTTGCTTATTT 59.112 36.000 0.75 0.00 45.31 1.40
2373 2843 7.053498 TGTATCTCCTGCATGTTGCTTATTTA 58.947 34.615 0.75 0.00 45.31 1.40
2376 2846 7.408756 TCTCCTGCATGTTGCTTATTTAATT 57.591 32.000 0.75 0.00 45.31 1.40
2377 2847 7.259882 TCTCCTGCATGTTGCTTATTTAATTG 58.740 34.615 0.75 0.00 45.31 2.32
2378 2848 7.122501 TCTCCTGCATGTTGCTTATTTAATTGA 59.877 33.333 0.75 0.00 45.31 2.57
2379 2849 7.609960 TCCTGCATGTTGCTTATTTAATTGAA 58.390 30.769 0.75 0.00 45.31 2.69
2381 2851 8.885722 CCTGCATGTTGCTTATTTAATTGAATT 58.114 29.630 0.26 0.00 45.31 2.17
2421 2891 5.961396 ACTACTCTTGTGTCTTATCACGT 57.039 39.130 0.00 0.00 40.74 4.49
2423 2893 4.848562 ACTCTTGTGTCTTATCACGTCA 57.151 40.909 0.00 0.00 40.74 4.35
2424 2894 5.196341 ACTCTTGTGTCTTATCACGTCAA 57.804 39.130 0.00 0.00 40.74 3.18
2425 2895 4.982916 ACTCTTGTGTCTTATCACGTCAAC 59.017 41.667 0.00 0.00 40.74 3.18
2426 2896 5.196341 TCTTGTGTCTTATCACGTCAACT 57.804 39.130 0.00 0.00 40.74 3.16
2427 2897 6.016527 ACTCTTGTGTCTTATCACGTCAACTA 60.017 38.462 0.00 0.00 40.74 2.24
2428 2898 6.920817 TCTTGTGTCTTATCACGTCAACTAT 58.079 36.000 0.00 0.00 40.74 2.12
2429 2899 7.375834 TCTTGTGTCTTATCACGTCAACTATT 58.624 34.615 0.00 0.00 40.74 1.73
2430 2900 7.870954 TCTTGTGTCTTATCACGTCAACTATTT 59.129 33.333 0.00 0.00 40.74 1.40
2431 2901 9.135843 CTTGTGTCTTATCACGTCAACTATTTA 57.864 33.333 0.00 0.00 40.74 1.40
2432 2902 9.647797 TTGTGTCTTATCACGTCAACTATTTAT 57.352 29.630 0.00 0.00 40.74 1.40
2526 4369 4.905456 CCTTATATACAACTGGAGGGGACA 59.095 45.833 0.00 0.00 0.00 4.02
2625 4787 6.702329 CAGTTACACAAGAGAGGGTTATCTT 58.298 40.000 0.00 0.00 35.32 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.799916 GGTGTCGTCGTCGCTGAC 60.800 66.667 9.04 9.04 36.96 3.51
31 32 4.373116 TCGCCGTCTTCACTGGCC 62.373 66.667 0.00 0.00 46.12 5.36
32 33 3.112709 GTCGCCGTCTTCACTGGC 61.113 66.667 0.00 0.00 45.39 4.85
33 34 2.805353 CGTCGCCGTCTTCACTGG 60.805 66.667 0.00 0.00 0.00 4.00
34 35 2.805353 CCGTCGCCGTCTTCACTG 60.805 66.667 0.00 0.00 0.00 3.66
35 36 4.719369 GCCGTCGCCGTCTTCACT 62.719 66.667 0.00 0.00 0.00 3.41
79 80 3.047877 AAAAACTCCTCCCGCGCG 61.048 61.111 25.67 25.67 0.00 6.86
118 119 8.528643 GCCACTTAAAAGACCCAGTTTTATAAT 58.471 33.333 0.00 0.00 31.19 1.28
119 120 7.039574 GGCCACTTAAAAGACCCAGTTTTATAA 60.040 37.037 0.00 0.00 31.19 0.98
120 121 6.434965 GGCCACTTAAAAGACCCAGTTTTATA 59.565 38.462 0.00 0.00 31.19 0.98
121 122 5.245301 GGCCACTTAAAAGACCCAGTTTTAT 59.755 40.000 0.00 0.00 31.19 1.40
122 123 4.585581 GGCCACTTAAAAGACCCAGTTTTA 59.414 41.667 0.00 0.00 0.00 1.52
123 124 3.386726 GGCCACTTAAAAGACCCAGTTTT 59.613 43.478 0.00 0.00 0.00 2.43
124 125 2.963101 GGCCACTTAAAAGACCCAGTTT 59.037 45.455 0.00 0.00 0.00 2.66
125 126 2.594131 GGCCACTTAAAAGACCCAGTT 58.406 47.619 0.00 0.00 0.00 3.16
126 127 1.544759 CGGCCACTTAAAAGACCCAGT 60.545 52.381 2.24 0.00 0.00 4.00
127 128 1.165270 CGGCCACTTAAAAGACCCAG 58.835 55.000 2.24 0.00 0.00 4.45
128 129 0.475044 ACGGCCACTTAAAAGACCCA 59.525 50.000 2.24 0.00 0.00 4.51
129 130 0.879090 CACGGCCACTTAAAAGACCC 59.121 55.000 2.24 0.00 0.00 4.46
130 131 0.879090 CCACGGCCACTTAAAAGACC 59.121 55.000 2.24 0.00 0.00 3.85
131 132 1.886886 TCCACGGCCACTTAAAAGAC 58.113 50.000 2.24 0.00 0.00 3.01
132 133 2.619646 GTTTCCACGGCCACTTAAAAGA 59.380 45.455 2.24 0.00 0.00 2.52
133 134 2.621526 AGTTTCCACGGCCACTTAAAAG 59.378 45.455 2.24 0.00 0.00 2.27
134 135 2.359531 CAGTTTCCACGGCCACTTAAAA 59.640 45.455 2.24 0.00 0.00 1.52
135 136 1.950909 CAGTTTCCACGGCCACTTAAA 59.049 47.619 2.24 0.00 0.00 1.52
136 137 1.600023 CAGTTTCCACGGCCACTTAA 58.400 50.000 2.24 0.00 0.00 1.85
137 138 0.250553 CCAGTTTCCACGGCCACTTA 60.251 55.000 2.24 0.00 0.00 2.24
138 139 1.528309 CCAGTTTCCACGGCCACTT 60.528 57.895 2.24 0.00 0.00 3.16
139 140 2.113139 CCAGTTTCCACGGCCACT 59.887 61.111 2.24 0.00 0.00 4.00
140 141 2.983592 CCCAGTTTCCACGGCCAC 60.984 66.667 2.24 0.00 0.00 5.01
141 142 4.966787 GCCCAGTTTCCACGGCCA 62.967 66.667 2.24 0.00 0.00 5.36
144 145 4.636435 ACGGCCCAGTTTCCACGG 62.636 66.667 0.00 0.00 0.00 4.94
145 146 1.730451 AAAACGGCCCAGTTTCCACG 61.730 55.000 8.93 0.00 42.81 4.94
146 147 0.249280 CAAAACGGCCCAGTTTCCAC 60.249 55.000 8.93 0.00 42.81 4.02
147 148 0.684805 ACAAAACGGCCCAGTTTCCA 60.685 50.000 8.93 0.00 42.81 3.53
148 149 0.249280 CACAAAACGGCCCAGTTTCC 60.249 55.000 8.93 0.00 42.81 3.13
149 150 0.249280 CCACAAAACGGCCCAGTTTC 60.249 55.000 8.93 0.00 42.81 2.78
150 151 1.819905 CCACAAAACGGCCCAGTTT 59.180 52.632 0.00 0.00 45.21 2.66
151 152 2.791868 GCCACAAAACGGCCCAGTT 61.792 57.895 0.00 0.00 44.22 3.16
152 153 3.223589 GCCACAAAACGGCCCAGT 61.224 61.111 0.00 0.00 44.22 4.00
158 159 3.666253 GGGTCGGCCACAAAACGG 61.666 66.667 9.07 0.00 36.17 4.44
159 160 2.734948 TAGGGGTCGGCCACAAAACG 62.735 60.000 12.87 0.00 41.86 3.60
160 161 0.323087 ATAGGGGTCGGCCACAAAAC 60.323 55.000 12.87 0.00 41.86 2.43
161 162 1.287217 TATAGGGGTCGGCCACAAAA 58.713 50.000 12.87 0.00 41.86 2.44
162 163 1.513858 ATATAGGGGTCGGCCACAAA 58.486 50.000 12.87 0.00 41.86 2.83
163 164 2.402182 TATATAGGGGTCGGCCACAA 57.598 50.000 12.87 0.00 41.86 3.33
164 165 2.184533 CATATATAGGGGTCGGCCACA 58.815 52.381 12.87 0.00 41.86 4.17
165 166 2.185387 ACATATATAGGGGTCGGCCAC 58.815 52.381 9.07 3.04 38.88 5.01
166 167 2.634639 ACATATATAGGGGTCGGCCA 57.365 50.000 9.07 0.00 36.17 5.36
167 168 3.994931 AAACATATATAGGGGTCGGCC 57.005 47.619 0.00 0.00 0.00 6.13
168 169 6.412214 ACATAAAACATATATAGGGGTCGGC 58.588 40.000 0.00 0.00 0.00 5.54
169 170 8.857694 AAACATAAAACATATATAGGGGTCGG 57.142 34.615 0.00 0.00 0.00 4.79
244 245 2.616001 CCGGGGTGGACGAGAATAAAAA 60.616 50.000 0.00 0.00 42.00 1.94
245 246 1.065998 CCGGGGTGGACGAGAATAAAA 60.066 52.381 0.00 0.00 42.00 1.52
246 247 0.538118 CCGGGGTGGACGAGAATAAA 59.462 55.000 0.00 0.00 42.00 1.40
247 248 0.324552 TCCGGGGTGGACGAGAATAA 60.325 55.000 0.00 0.00 43.74 1.40
248 249 1.307309 TCCGGGGTGGACGAGAATA 59.693 57.895 0.00 0.00 43.74 1.75
249 250 2.038329 TCCGGGGTGGACGAGAAT 59.962 61.111 0.00 0.00 43.74 2.40
257 258 2.038269 CAAATCGTGTCCGGGGTGG 61.038 63.158 0.00 0.00 40.09 4.61
258 259 2.038269 CCAAATCGTGTCCGGGGTG 61.038 63.158 0.00 0.00 33.95 4.61
259 260 2.349755 CCAAATCGTGTCCGGGGT 59.650 61.111 0.00 0.00 33.95 4.95
260 261 2.437716 CCCAAATCGTGTCCGGGG 60.438 66.667 0.00 0.00 32.88 5.73
261 262 2.437716 CCCCAAATCGTGTCCGGG 60.438 66.667 0.00 0.00 36.59 5.73
262 263 2.038269 CACCCCAAATCGTGTCCGG 61.038 63.158 0.00 0.00 33.95 5.14
263 264 2.686816 GCACCCCAAATCGTGTCCG 61.687 63.158 0.00 0.00 32.40 4.79
264 265 2.686816 CGCACCCCAAATCGTGTCC 61.687 63.158 0.00 0.00 32.40 4.02
265 266 2.686816 CCGCACCCCAAATCGTGTC 61.687 63.158 0.00 0.00 32.40 3.67
266 267 2.671619 CCGCACCCCAAATCGTGT 60.672 61.111 0.00 0.00 32.40 4.49
267 268 4.114997 GCCGCACCCCAAATCGTG 62.115 66.667 0.00 0.00 0.00 4.35
270 271 3.758931 GTGGCCGCACCCCAAATC 61.759 66.667 12.58 0.00 37.83 2.17
271 272 4.612279 TGTGGCCGCACCCCAAAT 62.612 61.111 16.89 0.00 37.83 2.32
297 298 3.490759 CAGATGGGTCGTGCGTGC 61.491 66.667 0.00 0.00 0.00 5.34
298 299 2.094659 GTCAGATGGGTCGTGCGTG 61.095 63.158 0.00 0.00 0.00 5.34
299 300 2.094757 TTGTCAGATGGGTCGTGCGT 62.095 55.000 0.00 0.00 0.00 5.24
300 301 0.948623 TTTGTCAGATGGGTCGTGCG 60.949 55.000 0.00 0.00 0.00 5.34
301 302 0.798776 CTTTGTCAGATGGGTCGTGC 59.201 55.000 0.00 0.00 0.00 5.34
302 303 0.798776 GCTTTGTCAGATGGGTCGTG 59.201 55.000 0.00 0.00 0.00 4.35
303 304 0.321653 GGCTTTGTCAGATGGGTCGT 60.322 55.000 0.00 0.00 0.00 4.34
304 305 1.361668 CGGCTTTGTCAGATGGGTCG 61.362 60.000 0.00 0.00 0.00 4.79
305 306 1.026718 CCGGCTTTGTCAGATGGGTC 61.027 60.000 0.00 0.00 0.00 4.46
306 307 1.002134 CCGGCTTTGTCAGATGGGT 60.002 57.895 0.00 0.00 0.00 4.51
307 308 1.026718 GTCCGGCTTTGTCAGATGGG 61.027 60.000 0.00 0.00 0.00 4.00
308 309 0.321564 TGTCCGGCTTTGTCAGATGG 60.322 55.000 0.00 0.00 0.00 3.51
309 310 0.798776 GTGTCCGGCTTTGTCAGATG 59.201 55.000 0.00 0.00 0.00 2.90
310 311 0.670546 CGTGTCCGGCTTTGTCAGAT 60.671 55.000 0.00 0.00 0.00 2.90
311 312 1.300620 CGTGTCCGGCTTTGTCAGA 60.301 57.895 0.00 0.00 0.00 3.27
312 313 3.244105 CGTGTCCGGCTTTGTCAG 58.756 61.111 0.00 0.00 0.00 3.51
347 348 0.894835 CCGGATTTTGTCCCTTTGGG 59.105 55.000 0.00 0.00 44.77 4.12
348 349 0.246360 GCCGGATTTTGTCCCTTTGG 59.754 55.000 5.05 0.00 44.77 3.28
349 350 0.246360 GGCCGGATTTTGTCCCTTTG 59.754 55.000 5.05 0.00 44.77 2.77
350 351 0.178947 TGGCCGGATTTTGTCCCTTT 60.179 50.000 5.05 0.00 44.77 3.11
351 352 0.178947 TTGGCCGGATTTTGTCCCTT 60.179 50.000 5.05 0.00 44.77 3.95
352 353 0.041090 ATTGGCCGGATTTTGTCCCT 59.959 50.000 5.05 0.00 44.77 4.20
353 354 0.459899 GATTGGCCGGATTTTGTCCC 59.540 55.000 5.05 0.00 44.77 4.46
354 355 0.459899 GGATTGGCCGGATTTTGTCC 59.540 55.000 5.05 0.00 44.10 4.02
374 375 2.312436 CGACCCAAAACGGACGTCC 61.312 63.158 25.28 25.28 36.56 4.79
375 376 1.592400 ACGACCCAAAACGGACGTC 60.592 57.895 7.13 7.13 41.32 4.34
376 377 1.884004 CACGACCCAAAACGGACGT 60.884 57.895 0.00 0.00 44.20 4.34
377 378 2.932905 CACGACCCAAAACGGACG 59.067 61.111 0.00 0.00 39.23 4.79
378 379 2.635338 GCACGACCCAAAACGGAC 59.365 61.111 0.00 0.00 36.56 4.79
379 380 2.968156 CGCACGACCCAAAACGGA 60.968 61.111 0.00 0.00 36.56 4.69
380 381 4.020378 CCGCACGACCCAAAACGG 62.020 66.667 0.00 0.00 0.00 4.44
381 382 3.273834 ACCGCACGACCCAAAACG 61.274 61.111 0.00 0.00 0.00 3.60
382 383 2.330041 CACCGCACGACCCAAAAC 59.670 61.111 0.00 0.00 0.00 2.43
383 384 2.902846 CCACCGCACGACCCAAAA 60.903 61.111 0.00 0.00 0.00 2.44
384 385 3.818121 CTCCACCGCACGACCCAAA 62.818 63.158 0.00 0.00 0.00 3.28
385 386 4.308458 CTCCACCGCACGACCCAA 62.308 66.667 0.00 0.00 0.00 4.12
387 388 4.309950 AACTCCACCGCACGACCC 62.310 66.667 0.00 0.00 0.00 4.46
388 389 3.041940 CAACTCCACCGCACGACC 61.042 66.667 0.00 0.00 0.00 4.79
389 390 3.041940 CCAACTCCACCGCACGAC 61.042 66.667 0.00 0.00 0.00 4.34
390 391 4.980805 GCCAACTCCACCGCACGA 62.981 66.667 0.00 0.00 0.00 4.35
392 393 4.643387 AGGCCAACTCCACCGCAC 62.643 66.667 5.01 0.00 0.00 5.34
393 394 4.329545 GAGGCCAACTCCACCGCA 62.330 66.667 5.01 0.00 40.49 5.69
394 395 4.329545 TGAGGCCAACTCCACCGC 62.330 66.667 5.01 0.00 46.01 5.68
395 396 2.358737 GTGAGGCCAACTCCACCG 60.359 66.667 5.01 0.00 46.01 4.94
396 397 1.302832 CAGTGAGGCCAACTCCACC 60.303 63.158 5.01 0.00 46.01 4.61
397 398 1.968540 GCAGTGAGGCCAACTCCAC 60.969 63.158 5.01 4.81 46.01 4.02
398 399 2.431683 GCAGTGAGGCCAACTCCA 59.568 61.111 5.01 0.00 46.01 3.86
415 416 1.345741 TGAGACTTGAACTCTGCTGGG 59.654 52.381 0.00 0.00 35.66 4.45
419 420 2.298729 AGGTCTGAGACTTGAACTCTGC 59.701 50.000 12.92 0.00 35.66 4.26
473 474 3.244078 ACGCACATCACCTAAAAGTCTGA 60.244 43.478 0.00 0.00 0.00 3.27
483 484 0.106708 ACACTGAACGCACATCACCT 59.893 50.000 0.00 0.00 0.00 4.00
484 485 0.235665 CACACTGAACGCACATCACC 59.764 55.000 0.00 0.00 0.00 4.02
485 486 0.235665 CCACACTGAACGCACATCAC 59.764 55.000 0.00 0.00 0.00 3.06
486 487 0.884259 CCCACACTGAACGCACATCA 60.884 55.000 0.00 0.00 0.00 3.07
487 488 0.602638 TCCCACACTGAACGCACATC 60.603 55.000 0.00 0.00 0.00 3.06
488 489 0.603707 CTCCCACACTGAACGCACAT 60.604 55.000 0.00 0.00 0.00 3.21
489 490 1.227527 CTCCCACACTGAACGCACA 60.228 57.895 0.00 0.00 0.00 4.57
490 491 1.069090 TCTCCCACACTGAACGCAC 59.931 57.895 0.00 0.00 0.00 5.34
491 492 1.069090 GTCTCCCACACTGAACGCA 59.931 57.895 0.00 0.00 0.00 5.24
492 493 2.022129 CGTCTCCCACACTGAACGC 61.022 63.158 0.00 0.00 0.00 4.84
493 494 0.249322 AACGTCTCCCACACTGAACG 60.249 55.000 0.00 0.00 0.00 3.95
494 495 1.499049 GAACGTCTCCCACACTGAAC 58.501 55.000 0.00 0.00 0.00 3.18
495 496 0.391597 GGAACGTCTCCCACACTGAA 59.608 55.000 0.00 0.00 38.44 3.02
496 497 2.046938 GGAACGTCTCCCACACTGA 58.953 57.895 0.00 0.00 38.44 3.41
497 498 4.675404 GGAACGTCTCCCACACTG 57.325 61.111 0.00 0.00 38.44 3.66
510 511 6.295039 TGTCTTTTTCATAGTTGACGGAAC 57.705 37.500 0.00 0.00 34.40 3.62
511 512 8.664798 CATATGTCTTTTTCATAGTTGACGGAA 58.335 33.333 0.00 0.00 32.43 4.30
512 513 7.822334 ACATATGTCTTTTTCATAGTTGACGGA 59.178 33.333 1.41 0.00 32.43 4.69
513 514 7.904977 CACATATGTCTTTTTCATAGTTGACGG 59.095 37.037 5.07 0.00 32.43 4.79
514 515 8.655970 TCACATATGTCTTTTTCATAGTTGACG 58.344 33.333 5.07 0.00 32.43 4.35
515 516 9.760660 GTCACATATGTCTTTTTCATAGTTGAC 57.239 33.333 5.07 1.73 36.92 3.18
516 517 8.655970 CGTCACATATGTCTTTTTCATAGTTGA 58.344 33.333 5.07 0.00 32.43 3.18
517 518 8.655970 TCGTCACATATGTCTTTTTCATAGTTG 58.344 33.333 5.07 0.00 32.43 3.16
518 519 8.656849 GTCGTCACATATGTCTTTTTCATAGTT 58.343 33.333 5.07 0.00 32.43 2.24
519 520 8.035394 AGTCGTCACATATGTCTTTTTCATAGT 58.965 33.333 5.07 0.00 32.43 2.12
520 521 8.412608 AGTCGTCACATATGTCTTTTTCATAG 57.587 34.615 5.07 0.00 32.43 2.23
521 522 8.771920 AAGTCGTCACATATGTCTTTTTCATA 57.228 30.769 5.07 0.00 33.26 2.15
522 523 7.672983 AAGTCGTCACATATGTCTTTTTCAT 57.327 32.000 5.07 0.00 0.00 2.57
523 524 7.870954 ACTAAGTCGTCACATATGTCTTTTTCA 59.129 33.333 5.07 0.00 0.00 2.69
524 525 8.240883 ACTAAGTCGTCACATATGTCTTTTTC 57.759 34.615 5.07 0.00 0.00 2.29
525 526 7.870954 TGACTAAGTCGTCACATATGTCTTTTT 59.129 33.333 5.07 0.00 38.89 1.94
526 527 7.375834 TGACTAAGTCGTCACATATGTCTTTT 58.624 34.615 5.07 0.00 38.89 2.27
527 528 6.920817 TGACTAAGTCGTCACATATGTCTTT 58.079 36.000 5.07 0.00 38.89 2.52
528 529 6.510879 TGACTAAGTCGTCACATATGTCTT 57.489 37.500 5.07 8.52 38.89 3.01
529 530 6.510879 TTGACTAAGTCGTCACATATGTCT 57.489 37.500 5.07 0.00 43.11 3.41
530 531 7.197017 AGATTGACTAAGTCGTCACATATGTC 58.803 38.462 5.07 0.00 43.11 3.06
531 532 7.101652 AGATTGACTAAGTCGTCACATATGT 57.898 36.000 1.41 1.41 43.11 2.29
532 533 7.196331 TGAGATTGACTAAGTCGTCACATATG 58.804 38.462 0.00 0.00 43.11 1.78
533 534 7.334844 TGAGATTGACTAAGTCGTCACATAT 57.665 36.000 0.00 0.00 43.11 1.78
534 535 6.753107 TGAGATTGACTAAGTCGTCACATA 57.247 37.500 0.00 0.00 43.11 2.29
535 536 5.644977 TGAGATTGACTAAGTCGTCACAT 57.355 39.130 0.00 0.00 43.11 3.21
536 537 5.240844 TCTTGAGATTGACTAAGTCGTCACA 59.759 40.000 0.00 0.00 43.11 3.58
537 538 5.700846 TCTTGAGATTGACTAAGTCGTCAC 58.299 41.667 0.00 0.00 43.11 3.67
538 539 5.959618 TCTTGAGATTGACTAAGTCGTCA 57.040 39.130 0.00 0.00 41.82 4.35
539 540 6.556212 TCATCTTGAGATTGACTAAGTCGTC 58.444 40.000 0.00 0.00 31.57 4.20
540 541 6.516739 TCATCTTGAGATTGACTAAGTCGT 57.483 37.500 0.00 0.00 31.57 4.34
541 542 6.977502 ACATCATCTTGAGATTGACTAAGTCG 59.022 38.462 0.00 0.00 31.57 4.18
542 543 7.763528 ACACATCATCTTGAGATTGACTAAGTC 59.236 37.037 0.00 0.00 31.21 3.01
547 548 5.646793 CCAACACATCATCTTGAGATTGACT 59.353 40.000 0.90 0.00 31.21 3.41
559 560 5.050499 CGAGAGATTAAGCCAACACATCATC 60.050 44.000 0.00 0.00 0.00 2.92
569 570 1.137086 GAGCACCGAGAGATTAAGCCA 59.863 52.381 0.00 0.00 0.00 4.75
574 575 3.574396 CCCTTATGAGCACCGAGAGATTA 59.426 47.826 0.00 0.00 0.00 1.75
593 597 7.437713 TGAATGAACTCATACATTCTACCCT 57.562 36.000 16.80 0.00 46.88 4.34
595 599 9.429359 CCTATGAATGAACTCATACATTCTACC 57.571 37.037 16.80 0.00 46.88 3.18
601 605 8.211030 TCATCCCTATGAATGAACTCATACAT 57.789 34.615 0.00 0.00 39.20 2.29
608 614 7.071698 ACATGTACTCATCCCTATGAATGAACT 59.928 37.037 0.00 0.00 41.57 3.01
611 617 6.327365 ACACATGTACTCATCCCTATGAATGA 59.673 38.462 0.00 0.00 41.57 2.57
613 619 6.100279 ACACACATGTACTCATCCCTATGAAT 59.900 38.462 0.00 0.00 38.32 2.57
621 627 3.490896 CGCATACACACATGTACTCATCC 59.509 47.826 0.00 0.00 44.11 3.51
630 636 6.452872 CGATCATACATACGCATACACACATG 60.453 42.308 0.00 0.00 0.00 3.21
635 641 5.059343 GTGACGATCATACATACGCATACAC 59.941 44.000 0.00 0.00 0.00 2.90
636 642 5.151389 GTGACGATCATACATACGCATACA 58.849 41.667 0.00 0.00 0.00 2.29
665 671 0.111253 CTCCCACTTGCCCTGACTTT 59.889 55.000 0.00 0.00 0.00 2.66
668 674 1.298014 CTCTCCCACTTGCCCTGAC 59.702 63.158 0.00 0.00 0.00 3.51
680 686 2.772691 CCAGTACGCGTCCTCTCCC 61.773 68.421 18.63 0.00 0.00 4.30
682 688 1.428620 GACCAGTACGCGTCCTCTC 59.571 63.158 18.63 2.20 0.00 3.20
683 689 2.045131 GGACCAGTACGCGTCCTCT 61.045 63.158 18.63 10.57 44.40 3.69
684 690 2.488820 GGACCAGTACGCGTCCTC 59.511 66.667 18.63 8.07 44.40 3.71
688 694 1.177256 ACTCTTGGACCAGTACGCGT 61.177 55.000 19.17 19.17 0.00 6.01
689 695 0.806868 TACTCTTGGACCAGTACGCG 59.193 55.000 3.53 3.53 0.00 6.01
690 696 2.274920 GTACTCTTGGACCAGTACGC 57.725 55.000 6.73 0.00 36.60 4.42
692 698 5.124457 TCAATACGTACTCTTGGACCAGTAC 59.876 44.000 10.95 10.95 41.08 2.73
693 699 5.255687 TCAATACGTACTCTTGGACCAGTA 58.744 41.667 0.00 0.00 0.00 2.74
694 700 4.084287 TCAATACGTACTCTTGGACCAGT 58.916 43.478 0.00 0.00 0.00 4.00
695 701 4.713824 TCAATACGTACTCTTGGACCAG 57.286 45.455 0.00 0.00 0.00 4.00
696 702 4.679639 GCATCAATACGTACTCTTGGACCA 60.680 45.833 0.00 0.00 0.00 4.02
697 703 3.802685 GCATCAATACGTACTCTTGGACC 59.197 47.826 0.00 0.00 0.00 4.46
703 709 5.050490 GGATTGTGCATCAATACGTACTCT 58.950 41.667 12.51 0.00 45.49 3.24
704 710 5.330271 GGATTGTGCATCAATACGTACTC 57.670 43.478 12.51 2.76 45.49 2.59
720 726 7.460296 GTTGAAAAACGAAAATGTTGGATTGT 58.540 30.769 0.00 0.00 31.10 2.71
770 779 3.068307 CCGTGGGAAGAAAGATAGACGAT 59.932 47.826 0.00 0.00 0.00 3.73
856 870 1.267574 ACGTGGGCTGGACAGATCAT 61.268 55.000 3.00 0.00 0.00 2.45
859 873 2.665000 CACGTGGGCTGGACAGAT 59.335 61.111 7.95 0.00 0.00 2.90
870 884 2.280524 TTCTTCCCGTGCACGTGG 60.281 61.111 34.81 31.94 37.74 4.94
1845 1973 1.992277 ATGTCCTTGAGCCTCGCCT 60.992 57.895 0.00 0.00 0.00 5.52
1998 2126 0.817229 TTCACCAACACATCAGCGCA 60.817 50.000 11.47 0.00 0.00 6.09
2053 2188 3.585862 TCAGAACATCGAAACAGTAGCC 58.414 45.455 0.00 0.00 0.00 3.93
2258 2439 4.333649 CGTGCATGGTAGAACATCATTTCT 59.666 41.667 0.00 0.00 39.28 2.52
2259 2440 4.496341 CCGTGCATGGTAGAACATCATTTC 60.496 45.833 17.42 0.00 0.00 2.17
2260 2441 3.378112 CCGTGCATGGTAGAACATCATTT 59.622 43.478 17.42 0.00 0.00 2.32
2261 2442 2.945008 CCGTGCATGGTAGAACATCATT 59.055 45.455 17.42 0.00 0.00 2.57
2263 2444 1.406751 CCCGTGCATGGTAGAACATCA 60.407 52.381 23.39 0.00 0.00 3.07
2264 2445 1.134521 TCCCGTGCATGGTAGAACATC 60.135 52.381 23.39 0.00 0.00 3.06
2266 2447 0.908910 ATCCCGTGCATGGTAGAACA 59.091 50.000 23.39 0.71 0.00 3.18
2268 2449 2.549992 GCATATCCCGTGCATGGTAGAA 60.550 50.000 23.39 6.60 42.08 2.10
2269 2450 1.001974 GCATATCCCGTGCATGGTAGA 59.998 52.381 23.39 14.63 42.08 2.59
2272 2453 1.228245 GGCATATCCCGTGCATGGT 60.228 57.895 23.39 8.74 44.25 3.55
2274 2455 3.256936 CGGCATATCCCGTGCATG 58.743 61.111 0.00 0.00 44.25 4.06
2312 2493 8.836413 GTCAATATATGTCCGAATCTCCAAAAA 58.164 33.333 0.00 0.00 0.00 1.94
2313 2494 7.444183 GGTCAATATATGTCCGAATCTCCAAAA 59.556 37.037 0.00 0.00 0.00 2.44
2315 2496 6.270000 AGGTCAATATATGTCCGAATCTCCAA 59.730 38.462 0.00 0.00 41.52 3.53
2316 2497 5.780282 AGGTCAATATATGTCCGAATCTCCA 59.220 40.000 0.00 0.00 41.52 3.86
2318 2499 6.102663 CCAGGTCAATATATGTCCGAATCTC 58.897 44.000 0.00 0.00 41.52 2.75
2320 2501 4.631813 GCCAGGTCAATATATGTCCGAATC 59.368 45.833 0.00 0.00 41.52 2.52
2322 2503 3.244422 GGCCAGGTCAATATATGTCCGAA 60.244 47.826 0.00 0.00 41.52 4.30
2323 2504 2.301870 GGCCAGGTCAATATATGTCCGA 59.698 50.000 0.00 0.00 41.52 4.55
2324 2505 2.303022 AGGCCAGGTCAATATATGTCCG 59.697 50.000 5.01 0.00 41.52 4.79
2325 2506 3.073062 ACAGGCCAGGTCAATATATGTCC 59.927 47.826 5.01 0.00 37.49 4.02
2326 2507 4.357918 ACAGGCCAGGTCAATATATGTC 57.642 45.455 5.01 0.00 0.00 3.06
2327 2508 4.079787 ACAACAGGCCAGGTCAATATATGT 60.080 41.667 5.01 0.00 0.00 2.29
2329 2510 4.796110 ACAACAGGCCAGGTCAATATAT 57.204 40.909 5.01 0.00 0.00 0.86
2330 2511 5.606749 AGATACAACAGGCCAGGTCAATATA 59.393 40.000 5.01 0.00 0.00 0.86
2331 2512 4.413520 AGATACAACAGGCCAGGTCAATAT 59.586 41.667 5.01 2.03 0.00 1.28
2332 2513 3.780294 AGATACAACAGGCCAGGTCAATA 59.220 43.478 5.01 0.00 0.00 1.90
2333 2514 2.578021 AGATACAACAGGCCAGGTCAAT 59.422 45.455 5.01 0.00 0.00 2.57
2335 2516 1.555075 GAGATACAACAGGCCAGGTCA 59.445 52.381 5.01 0.00 0.00 4.02
2338 2519 1.134280 CAGGAGATACAACAGGCCAGG 60.134 57.143 5.01 0.00 0.00 4.45
2339 2520 1.745141 GCAGGAGATACAACAGGCCAG 60.745 57.143 5.01 0.00 0.00 4.85
2341 2522 0.253044 TGCAGGAGATACAACAGGCC 59.747 55.000 0.00 0.00 0.00 5.19
2342 2523 1.945394 CATGCAGGAGATACAACAGGC 59.055 52.381 0.00 0.00 0.00 4.85
2343 2524 3.272574 ACATGCAGGAGATACAACAGG 57.727 47.619 4.84 0.00 0.00 4.00
2344 2525 3.181503 GCAACATGCAGGAGATACAACAG 60.182 47.826 4.84 0.00 44.26 3.16
2345 2526 2.749076 GCAACATGCAGGAGATACAACA 59.251 45.455 4.84 0.00 44.26 3.33
2346 2527 3.411415 GCAACATGCAGGAGATACAAC 57.589 47.619 4.84 0.00 44.26 3.32
2394 2864 8.399425 CGTGATAAGACACAAGAGTAGTAGAAT 58.601 37.037 0.00 0.00 40.34 2.40
2395 2865 7.389884 ACGTGATAAGACACAAGAGTAGTAGAA 59.610 37.037 0.00 0.00 40.34 2.10
2396 2866 6.877855 ACGTGATAAGACACAAGAGTAGTAGA 59.122 38.462 0.00 0.00 40.34 2.59
2397 2867 7.074507 ACGTGATAAGACACAAGAGTAGTAG 57.925 40.000 0.00 0.00 40.34 2.57
2398 2868 6.652062 TGACGTGATAAGACACAAGAGTAGTA 59.348 38.462 0.00 0.00 40.34 1.82
2399 2869 5.472478 TGACGTGATAAGACACAAGAGTAGT 59.528 40.000 0.00 0.00 40.34 2.73
2400 2870 5.939457 TGACGTGATAAGACACAAGAGTAG 58.061 41.667 0.00 0.00 40.34 2.57
2401 2871 5.952526 TGACGTGATAAGACACAAGAGTA 57.047 39.130 0.00 0.00 40.34 2.59
2402 2872 4.848562 TGACGTGATAAGACACAAGAGT 57.151 40.909 0.00 0.00 40.34 3.24
2403 2873 5.223382 AGTTGACGTGATAAGACACAAGAG 58.777 41.667 0.00 0.00 40.34 2.85
2406 2876 7.956420 AAATAGTTGACGTGATAAGACACAA 57.044 32.000 0.00 0.00 40.34 3.33
2432 2902 9.521503 CTCTCTCGTTTTCACTCATATCAATAA 57.478 33.333 0.00 0.00 0.00 1.40
2434 2904 7.776107 TCTCTCTCGTTTTCACTCATATCAAT 58.224 34.615 0.00 0.00 0.00 2.57
2659 5543 0.759436 GGACAGGCGAGGATTAGGGA 60.759 60.000 0.00 0.00 0.00 4.20
2899 7052 1.139058 CCTGTTCGGGATCTTCGGATT 59.861 52.381 8.61 0.00 34.38 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.