Multiple sequence alignment - TraesCS3A01G307000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G307000 chr3A 100.000 2985 0 0 1 2985 545256497 545259481 0.000000e+00 5513.0
1 TraesCS3A01G307000 chr3A 86.917 986 121 3 995 1973 545281342 545282326 0.000000e+00 1099.0
2 TraesCS3A01G307000 chr3A 86.241 1003 131 6 997 1996 545331368 545332366 0.000000e+00 1081.0
3 TraesCS3A01G307000 chr3A 98.835 601 7 0 2385 2985 545267069 545267669 0.000000e+00 1072.0
4 TraesCS3A01G307000 chr3A 84.353 997 138 10 992 1973 107757101 107756108 0.000000e+00 961.0
5 TraesCS3A01G307000 chr3A 93.333 270 10 4 2121 2384 672558226 672558493 2.790000e-105 392.0
6 TraesCS3A01G307000 chr3A 92.593 270 12 4 2121 2384 713533778 713533511 6.040000e-102 381.0
7 TraesCS3A01G307000 chr3B 91.376 2064 125 18 77 2109 141284668 141286709 0.000000e+00 2776.0
8 TraesCS3A01G307000 chr3B 86.762 982 124 4 996 1973 141735391 141736370 0.000000e+00 1088.0
9 TraesCS3A01G307000 chr3B 86.214 1001 133 4 998 1996 141740125 141741122 0.000000e+00 1079.0
10 TraesCS3A01G307000 chr3B 86.497 985 126 3 995 1973 141288923 141289906 0.000000e+00 1075.0
11 TraesCS3A01G307000 chr3B 81.890 127 15 6 1982 2107 141711156 141711275 1.890000e-17 100.0
12 TraesCS3A01G307000 chr3D 86.864 982 125 3 995 1973 91708069 91709049 0.000000e+00 1096.0
13 TraesCS3A01G307000 chr3D 84.460 991 139 8 997 1974 91683023 91682035 0.000000e+00 963.0
14 TraesCS3A01G307000 chr3D 86.603 627 44 19 1 593 91686743 91687363 0.000000e+00 656.0
15 TraesCS3A01G307000 chr3D 87.435 382 27 6 578 952 91688957 91689324 1.280000e-113 420.0
16 TraesCS3A01G307000 chr5B 98.502 601 9 0 2385 2985 550674386 550674986 0.000000e+00 1061.0
17 TraesCS3A01G307000 chr4B 98.502 601 9 0 2385 2985 163122073 163122673 0.000000e+00 1061.0
18 TraesCS3A01G307000 chr2B 98.502 601 9 0 2385 2985 595399732 595400332 0.000000e+00 1061.0
19 TraesCS3A01G307000 chr4A 98.497 599 9 0 2387 2985 13279673 13280271 0.000000e+00 1057.0
20 TraesCS3A01G307000 chrUn 98.336 601 10 0 2385 2985 398617649 398618249 0.000000e+00 1055.0
21 TraesCS3A01G307000 chr7B 98.176 603 11 0 2383 2985 472836900 472836298 0.000000e+00 1053.0
22 TraesCS3A01G307000 chr7B 85.338 266 35 4 2121 2384 496779302 496779039 3.790000e-69 272.0
23 TraesCS3A01G307000 chr5A 98.173 602 11 0 2384 2985 212701231 212700630 0.000000e+00 1051.0
24 TraesCS3A01G307000 chr5A 97.862 608 11 2 2378 2985 405024181 405024786 0.000000e+00 1050.0
25 TraesCS3A01G307000 chr5A 93.407 273 10 4 2117 2383 32203128 32202858 6.000000e-107 398.0
26 TraesCS3A01G307000 chr2D 89.668 271 18 5 2121 2384 548020285 548020018 1.330000e-88 337.0
27 TraesCS3A01G307000 chr5D 86.940 268 29 5 2121 2384 298267213 298266948 2.250000e-76 296.0
28 TraesCS3A01G307000 chr5D 86.296 270 23 4 2121 2384 530849265 530849004 6.300000e-72 281.0
29 TraesCS3A01G307000 chr6A 86.364 242 28 5 2145 2383 74369718 74369479 2.950000e-65 259.0
30 TraesCS3A01G307000 chr7A 87.963 216 22 4 2170 2384 36361044 36360832 4.940000e-63 252.0
31 TraesCS3A01G307000 chr6B 78.899 109 14 6 401 505 587380726 587380829 6.910000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G307000 chr3A 545256497 545259481 2984 False 5513.0 5513 100.0000 1 2985 1 chr3A.!!$F1 2984
1 TraesCS3A01G307000 chr3A 545281342 545282326 984 False 1099.0 1099 86.9170 995 1973 1 chr3A.!!$F3 978
2 TraesCS3A01G307000 chr3A 545331368 545332366 998 False 1081.0 1081 86.2410 997 1996 1 chr3A.!!$F4 999
3 TraesCS3A01G307000 chr3A 545267069 545267669 600 False 1072.0 1072 98.8350 2385 2985 1 chr3A.!!$F2 600
4 TraesCS3A01G307000 chr3A 107756108 107757101 993 True 961.0 961 84.3530 992 1973 1 chr3A.!!$R1 981
5 TraesCS3A01G307000 chr3B 141284668 141289906 5238 False 1925.5 2776 88.9365 77 2109 2 chr3B.!!$F2 2032
6 TraesCS3A01G307000 chr3B 141735391 141741122 5731 False 1083.5 1088 86.4880 996 1996 2 chr3B.!!$F3 1000
7 TraesCS3A01G307000 chr3D 91708069 91709049 980 False 1096.0 1096 86.8640 995 1973 1 chr3D.!!$F1 978
8 TraesCS3A01G307000 chr3D 91682035 91683023 988 True 963.0 963 84.4600 997 1974 1 chr3D.!!$R1 977
9 TraesCS3A01G307000 chr3D 91686743 91689324 2581 False 538.0 656 87.0190 1 952 2 chr3D.!!$F2 951
10 TraesCS3A01G307000 chr5B 550674386 550674986 600 False 1061.0 1061 98.5020 2385 2985 1 chr5B.!!$F1 600
11 TraesCS3A01G307000 chr4B 163122073 163122673 600 False 1061.0 1061 98.5020 2385 2985 1 chr4B.!!$F1 600
12 TraesCS3A01G307000 chr2B 595399732 595400332 600 False 1061.0 1061 98.5020 2385 2985 1 chr2B.!!$F1 600
13 TraesCS3A01G307000 chr4A 13279673 13280271 598 False 1057.0 1057 98.4970 2387 2985 1 chr4A.!!$F1 598
14 TraesCS3A01G307000 chrUn 398617649 398618249 600 False 1055.0 1055 98.3360 2385 2985 1 chrUn.!!$F1 600
15 TraesCS3A01G307000 chr7B 472836298 472836900 602 True 1053.0 1053 98.1760 2383 2985 1 chr7B.!!$R1 602
16 TraesCS3A01G307000 chr5A 212700630 212701231 601 True 1051.0 1051 98.1730 2384 2985 1 chr5A.!!$R2 601
17 TraesCS3A01G307000 chr5A 405024181 405024786 605 False 1050.0 1050 97.8620 2378 2985 1 chr5A.!!$F1 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 2450 0.105039 AGCGGTAGAAGTATGCTGCC 59.895 55.0 0.0 0.0 44.32 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 9324 0.032952 AGTGCGGTTCTGCTCGTTTA 59.967 50.0 5.23 0.0 35.36 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.912955 ACTTAGTAGAAAACAATGTTTGCGC 59.087 36.000 12.50 0.00 0.00 6.09
784 2445 2.586258 AGCACAGCGGTAGAAGTATG 57.414 50.000 0.00 0.00 0.00 2.39
785 2446 0.931005 GCACAGCGGTAGAAGTATGC 59.069 55.000 0.00 0.00 0.00 3.14
786 2447 1.471676 GCACAGCGGTAGAAGTATGCT 60.472 52.381 0.00 0.00 36.05 3.79
788 2449 1.212616 CAGCGGTAGAAGTATGCTGC 58.787 55.000 0.00 0.00 45.41 5.25
789 2450 0.105039 AGCGGTAGAAGTATGCTGCC 59.895 55.000 0.00 0.00 44.32 4.85
790 2451 0.105039 GCGGTAGAAGTATGCTGCCT 59.895 55.000 0.00 0.00 45.86 4.75
796 2457 1.202463 AGAAGTATGCTGCCTAGTGCG 60.202 52.381 0.00 0.00 45.60 5.34
835 2496 4.506758 AGTGCATTTATTGTGGATTTGGC 58.493 39.130 0.00 0.00 0.00 4.52
879 2540 4.144418 CCGCTAGGCTAGAGACGT 57.856 61.111 25.37 0.00 0.00 4.34
880 2541 1.649815 CCGCTAGGCTAGAGACGTG 59.350 63.158 25.37 5.36 0.00 4.49
881 2542 1.009449 CGCTAGGCTAGAGACGTGC 60.009 63.158 25.37 7.63 0.00 5.34
882 2543 1.715862 CGCTAGGCTAGAGACGTGCA 61.716 60.000 25.37 0.00 0.00 4.57
883 2544 0.248702 GCTAGGCTAGAGACGTGCAC 60.249 60.000 25.37 6.82 0.00 4.57
887 2548 2.646175 GCTAGAGACGTGCACCCCA 61.646 63.158 12.15 0.00 0.00 4.96
1010 2681 4.697756 ACACACCATGTCCGGCGG 62.698 66.667 22.51 22.51 36.54 6.13
1161 2838 2.126189 GACGTCCTGTACCACGCC 60.126 66.667 3.51 0.00 39.73 5.68
1251 2940 2.433664 GTGTACTTCCACGGCGGG 60.434 66.667 13.24 7.16 34.36 6.13
1496 3185 3.379445 GGACGTTCCTCTCCGGCA 61.379 66.667 0.00 0.00 32.45 5.69
1861 3551 1.452833 GAGGCTGAAGGACATGGGC 60.453 63.158 0.00 0.00 0.00 5.36
1903 9141 2.429767 CGAGGGAGAGCAGCATGGA 61.430 63.158 0.00 0.00 35.86 3.41
1915 9153 1.595382 GCATGGATTCTCCGTCCGG 60.595 63.158 0.00 0.00 40.17 5.14
1954 9192 3.414700 GACGAGTTGCTGCGGGTG 61.415 66.667 0.00 0.00 0.00 4.61
1955 9193 3.858868 GACGAGTTGCTGCGGGTGA 62.859 63.158 0.00 0.00 0.00 4.02
1969 9207 1.359459 GGGTGATCAAGCGGTTCGTC 61.359 60.000 0.00 0.00 0.00 4.20
1974 9212 2.186076 GATCAAGCGGTTCGTCTACAG 58.814 52.381 0.00 0.00 0.00 2.74
1977 9215 2.814183 AAGCGGTTCGTCTACAGCGG 62.814 60.000 0.00 0.00 42.84 5.52
1979 9217 2.260434 GGTTCGTCTACAGCGGCA 59.740 61.111 1.45 0.00 0.00 5.69
1980 9218 1.373748 GGTTCGTCTACAGCGGCAA 60.374 57.895 1.45 0.00 0.00 4.52
1988 9226 3.932580 TACAGCGGCAACTGAGCGG 62.933 63.158 11.76 0.00 40.25 5.52
1996 9234 1.230635 GCAACTGAGCGGTGATGTGT 61.231 55.000 0.00 0.00 0.00 3.72
1997 9235 1.229428 CAACTGAGCGGTGATGTGTT 58.771 50.000 0.00 0.00 0.00 3.32
1998 9236 1.069703 CAACTGAGCGGTGATGTGTTG 60.070 52.381 0.00 0.00 0.00 3.33
1999 9237 1.230635 ACTGAGCGGTGATGTGTTGC 61.231 55.000 0.00 0.00 0.00 4.17
2000 9238 2.231745 CTGAGCGGTGATGTGTTGCG 62.232 60.000 0.00 0.00 0.00 4.85
2001 9239 2.027073 GAGCGGTGATGTGTTGCGA 61.027 57.895 0.00 0.00 0.00 5.10
2002 9240 1.361668 GAGCGGTGATGTGTTGCGAT 61.362 55.000 0.00 0.00 0.00 4.58
2003 9241 0.955428 AGCGGTGATGTGTTGCGATT 60.955 50.000 0.00 0.00 0.00 3.34
2004 9242 0.109781 GCGGTGATGTGTTGCGATTT 60.110 50.000 0.00 0.00 0.00 2.17
2005 9243 1.605500 CGGTGATGTGTTGCGATTTG 58.394 50.000 0.00 0.00 0.00 2.32
2006 9244 1.196581 CGGTGATGTGTTGCGATTTGA 59.803 47.619 0.00 0.00 0.00 2.69
2007 9245 2.584791 GGTGATGTGTTGCGATTTGAC 58.415 47.619 0.00 0.00 0.00 3.18
2008 9246 2.226437 GGTGATGTGTTGCGATTTGACT 59.774 45.455 0.00 0.00 0.00 3.41
2009 9247 3.228749 GTGATGTGTTGCGATTTGACTG 58.771 45.455 0.00 0.00 0.00 3.51
2010 9248 3.058983 GTGATGTGTTGCGATTTGACTGA 60.059 43.478 0.00 0.00 0.00 3.41
2011 9249 3.752747 TGATGTGTTGCGATTTGACTGAT 59.247 39.130 0.00 0.00 0.00 2.90
2012 9250 3.541071 TGTGTTGCGATTTGACTGATG 57.459 42.857 0.00 0.00 0.00 3.07
2013 9251 2.245096 GTGTTGCGATTTGACTGATGC 58.755 47.619 0.00 0.00 0.00 3.91
2014 9252 2.095567 GTGTTGCGATTTGACTGATGCT 60.096 45.455 0.00 0.00 0.00 3.79
2015 9253 2.553602 TGTTGCGATTTGACTGATGCTT 59.446 40.909 0.00 0.00 0.00 3.91
2016 9254 2.905959 TGCGATTTGACTGATGCTTG 57.094 45.000 0.00 0.00 0.00 4.01
2017 9255 1.135603 TGCGATTTGACTGATGCTTGC 60.136 47.619 0.00 0.00 0.00 4.01
2018 9256 1.131883 GCGATTTGACTGATGCTTGCT 59.868 47.619 0.00 0.00 0.00 3.91
2019 9257 2.415090 GCGATTTGACTGATGCTTGCTT 60.415 45.455 0.00 0.00 0.00 3.91
2020 9258 3.168963 CGATTTGACTGATGCTTGCTTG 58.831 45.455 0.00 0.00 0.00 4.01
2021 9259 3.365666 CGATTTGACTGATGCTTGCTTGT 60.366 43.478 0.00 0.00 0.00 3.16
2022 9260 4.553323 GATTTGACTGATGCTTGCTTGTT 58.447 39.130 0.00 0.00 0.00 2.83
2023 9261 3.358707 TTGACTGATGCTTGCTTGTTG 57.641 42.857 0.00 0.00 0.00 3.33
2024 9262 1.001048 TGACTGATGCTTGCTTGTTGC 60.001 47.619 0.00 0.00 43.25 4.17
2053 9291 4.993705 TGGAAATCCAGTTACTGAACCT 57.006 40.909 14.66 0.00 42.01 3.50
2055 9293 6.049955 TGGAAATCCAGTTACTGAACCTAG 57.950 41.667 14.66 0.00 42.01 3.02
2056 9294 5.546499 TGGAAATCCAGTTACTGAACCTAGT 59.454 40.000 14.66 0.00 42.01 2.57
2057 9295 5.875359 GGAAATCCAGTTACTGAACCTAGTG 59.125 44.000 14.66 0.00 36.08 2.74
2058 9296 6.295688 GGAAATCCAGTTACTGAACCTAGTGA 60.296 42.308 14.66 0.01 36.08 3.41
2059 9297 6.875972 AATCCAGTTACTGAACCTAGTGAT 57.124 37.500 14.66 2.52 36.08 3.06
2060 9298 5.661056 TCCAGTTACTGAACCTAGTGATG 57.339 43.478 14.66 0.00 36.08 3.07
2061 9299 4.081642 TCCAGTTACTGAACCTAGTGATGC 60.082 45.833 14.66 0.00 36.08 3.91
2062 9300 4.322725 CCAGTTACTGAACCTAGTGATGCA 60.323 45.833 14.66 0.00 36.08 3.96
2063 9301 5.423015 CAGTTACTGAACCTAGTGATGCAT 58.577 41.667 6.50 0.00 36.08 3.96
2064 9302 5.877012 CAGTTACTGAACCTAGTGATGCATT 59.123 40.000 6.50 0.00 36.08 3.56
2065 9303 6.372659 CAGTTACTGAACCTAGTGATGCATTT 59.627 38.462 6.50 0.00 36.08 2.32
2066 9304 6.942576 AGTTACTGAACCTAGTGATGCATTTT 59.057 34.615 0.00 0.00 36.08 1.82
2067 9305 5.633830 ACTGAACCTAGTGATGCATTTTG 57.366 39.130 0.00 0.00 0.00 2.44
2068 9306 5.316167 ACTGAACCTAGTGATGCATTTTGA 58.684 37.500 0.00 0.00 0.00 2.69
2069 9307 5.948162 ACTGAACCTAGTGATGCATTTTGAT 59.052 36.000 0.00 0.00 0.00 2.57
2070 9308 6.127814 ACTGAACCTAGTGATGCATTTTGATG 60.128 38.462 0.00 0.00 0.00 3.07
2072 9310 3.382546 ACCTAGTGATGCATTTTGATGCC 59.617 43.478 0.00 0.00 46.43 4.40
2073 9311 3.382227 CCTAGTGATGCATTTTGATGCCA 59.618 43.478 0.00 0.00 46.43 4.92
2074 9312 3.520290 AGTGATGCATTTTGATGCCAG 57.480 42.857 0.00 0.00 46.43 4.85
2075 9313 2.829720 AGTGATGCATTTTGATGCCAGT 59.170 40.909 0.00 1.56 46.43 4.00
2076 9314 3.259876 AGTGATGCATTTTGATGCCAGTT 59.740 39.130 0.00 0.00 46.43 3.16
2077 9315 3.615496 GTGATGCATTTTGATGCCAGTTC 59.385 43.478 0.00 2.54 46.43 3.01
2078 9316 3.512329 TGATGCATTTTGATGCCAGTTCT 59.488 39.130 0.00 0.00 46.43 3.01
2079 9317 4.020928 TGATGCATTTTGATGCCAGTTCTT 60.021 37.500 0.00 0.00 46.43 2.52
2080 9318 5.185442 TGATGCATTTTGATGCCAGTTCTTA 59.815 36.000 0.00 0.00 46.43 2.10
2081 9319 5.465532 TGCATTTTGATGCCAGTTCTTAA 57.534 34.783 8.71 0.00 46.43 1.85
2082 9320 5.851720 TGCATTTTGATGCCAGTTCTTAAA 58.148 33.333 8.71 0.00 46.43 1.52
2083 9321 6.286758 TGCATTTTGATGCCAGTTCTTAAAA 58.713 32.000 8.71 0.00 46.43 1.52
2084 9322 6.935771 TGCATTTTGATGCCAGTTCTTAAAAT 59.064 30.769 8.71 0.00 46.43 1.82
2085 9323 8.093307 TGCATTTTGATGCCAGTTCTTAAAATA 58.907 29.630 8.71 0.00 46.43 1.40
2086 9324 9.101655 GCATTTTGATGCCAGTTCTTAAAATAT 57.898 29.630 0.00 0.00 41.47 1.28
2091 9329 9.781834 TTGATGCCAGTTCTTAAAATATAAACG 57.218 29.630 0.00 0.00 0.00 3.60
2092 9330 9.168451 TGATGCCAGTTCTTAAAATATAAACGA 57.832 29.630 0.00 0.00 0.00 3.85
2093 9331 9.651718 GATGCCAGTTCTTAAAATATAAACGAG 57.348 33.333 0.00 0.00 0.00 4.18
2094 9332 7.469260 TGCCAGTTCTTAAAATATAAACGAGC 58.531 34.615 0.00 0.00 0.00 5.03
2095 9333 7.119992 TGCCAGTTCTTAAAATATAAACGAGCA 59.880 33.333 0.00 0.00 33.46 4.26
2096 9334 7.640240 GCCAGTTCTTAAAATATAAACGAGCAG 59.360 37.037 0.00 0.00 0.00 4.24
2097 9335 8.879759 CCAGTTCTTAAAATATAAACGAGCAGA 58.120 33.333 0.00 0.00 0.00 4.26
2100 9338 9.486857 GTTCTTAAAATATAAACGAGCAGAACC 57.513 33.333 0.00 0.00 33.37 3.62
2101 9339 7.902032 TCTTAAAATATAAACGAGCAGAACCG 58.098 34.615 0.00 0.00 0.00 4.44
2102 9340 4.531659 AAATATAAACGAGCAGAACCGC 57.468 40.909 0.00 0.00 0.00 5.68
2103 9341 2.658373 TATAAACGAGCAGAACCGCA 57.342 45.000 0.00 0.00 0.00 5.69
2104 9342 1.076332 ATAAACGAGCAGAACCGCAC 58.924 50.000 0.00 0.00 0.00 5.34
2105 9343 0.032952 TAAACGAGCAGAACCGCACT 59.967 50.000 0.00 0.00 0.00 4.40
2106 9344 1.498865 AAACGAGCAGAACCGCACTG 61.499 55.000 0.00 0.00 38.27 3.66
2107 9345 3.114616 CGAGCAGAACCGCACTGG 61.115 66.667 0.00 0.00 46.41 4.00
2108 9346 2.743928 GAGCAGAACCGCACTGGG 60.744 66.667 0.00 0.00 44.64 4.45
2109 9347 3.240134 GAGCAGAACCGCACTGGGA 62.240 63.158 0.00 0.00 44.64 4.37
2110 9348 2.281484 GCAGAACCGCACTGGGAA 60.281 61.111 0.00 0.00 44.64 3.97
2111 9349 1.675641 GCAGAACCGCACTGGGAAT 60.676 57.895 0.00 0.00 44.64 3.01
2112 9350 1.648467 GCAGAACCGCACTGGGAATC 61.648 60.000 0.00 0.00 44.64 2.52
2113 9351 0.036010 CAGAACCGCACTGGGAATCT 60.036 55.000 0.00 0.00 44.64 2.40
2114 9352 0.036010 AGAACCGCACTGGGAATCTG 60.036 55.000 0.00 0.00 44.64 2.90
2115 9353 1.002134 AACCGCACTGGGAATCTGG 60.002 57.895 0.00 0.00 44.64 3.86
2116 9354 2.124570 CCGCACTGGGAATCTGGG 60.125 66.667 0.00 0.00 0.00 4.45
2117 9355 2.669133 CCGCACTGGGAATCTGGGA 61.669 63.158 0.00 0.00 0.00 4.37
2118 9356 1.528824 CGCACTGGGAATCTGGGAT 59.471 57.895 0.00 0.00 0.00 3.85
2119 9357 0.107017 CGCACTGGGAATCTGGGATT 60.107 55.000 0.00 0.00 0.00 3.01
2120 9358 1.683011 CGCACTGGGAATCTGGGATTT 60.683 52.381 0.00 0.00 0.00 2.17
2121 9359 1.753073 GCACTGGGAATCTGGGATTTG 59.247 52.381 0.00 0.00 0.00 2.32
2122 9360 2.885554 GCACTGGGAATCTGGGATTTGT 60.886 50.000 0.00 0.00 0.00 2.83
2123 9361 3.434309 CACTGGGAATCTGGGATTTGTT 58.566 45.455 0.00 0.00 0.00 2.83
2124 9362 4.599041 CACTGGGAATCTGGGATTTGTTA 58.401 43.478 0.00 0.00 0.00 2.41
2125 9363 4.641989 CACTGGGAATCTGGGATTTGTTAG 59.358 45.833 0.00 0.00 0.00 2.34
2126 9364 4.540099 ACTGGGAATCTGGGATTTGTTAGA 59.460 41.667 0.00 0.00 0.00 2.10
2127 9365 5.116084 TGGGAATCTGGGATTTGTTAGAG 57.884 43.478 0.00 0.00 0.00 2.43
2128 9366 4.788075 TGGGAATCTGGGATTTGTTAGAGA 59.212 41.667 0.00 0.00 0.00 3.10
2129 9367 5.252863 TGGGAATCTGGGATTTGTTAGAGAA 59.747 40.000 0.00 0.00 0.00 2.87
2130 9368 6.068853 TGGGAATCTGGGATTTGTTAGAGAAT 60.069 38.462 0.00 0.00 0.00 2.40
2131 9369 7.128728 TGGGAATCTGGGATTTGTTAGAGAATA 59.871 37.037 0.00 0.00 0.00 1.75
2132 9370 8.166726 GGGAATCTGGGATTTGTTAGAGAATAT 58.833 37.037 0.00 0.00 0.00 1.28
2133 9371 9.579932 GGAATCTGGGATTTGTTAGAGAATATT 57.420 33.333 0.00 0.00 0.00 1.28
2138 9376 9.838339 CTGGGATTTGTTAGAGAATATTACTGT 57.162 33.333 0.00 0.00 0.00 3.55
2157 9395 8.931385 TTACTGTAATCCGTTGTAATCCTAAC 57.069 34.615 0.00 0.00 0.00 2.34
2158 9396 6.343703 ACTGTAATCCGTTGTAATCCTAACC 58.656 40.000 0.00 0.00 0.00 2.85
2159 9397 6.155737 ACTGTAATCCGTTGTAATCCTAACCT 59.844 38.462 0.00 0.00 0.00 3.50
2160 9398 6.949715 TGTAATCCGTTGTAATCCTAACCTT 58.050 36.000 0.00 0.00 0.00 3.50
2161 9399 7.043565 TGTAATCCGTTGTAATCCTAACCTTC 58.956 38.462 0.00 0.00 0.00 3.46
2162 9400 5.952347 ATCCGTTGTAATCCTAACCTTCT 57.048 39.130 0.00 0.00 0.00 2.85
2163 9401 5.750352 TCCGTTGTAATCCTAACCTTCTT 57.250 39.130 0.00 0.00 0.00 2.52
2164 9402 5.727434 TCCGTTGTAATCCTAACCTTCTTC 58.273 41.667 0.00 0.00 0.00 2.87
2165 9403 4.874396 CCGTTGTAATCCTAACCTTCTTCC 59.126 45.833 0.00 0.00 0.00 3.46
2166 9404 5.338137 CCGTTGTAATCCTAACCTTCTTCCT 60.338 44.000 0.00 0.00 0.00 3.36
2167 9405 6.127253 CCGTTGTAATCCTAACCTTCTTCCTA 60.127 42.308 0.00 0.00 0.00 2.94
2168 9406 7.418712 CCGTTGTAATCCTAACCTTCTTCCTAT 60.419 40.741 0.00 0.00 0.00 2.57
2169 9407 7.985752 CGTTGTAATCCTAACCTTCTTCCTATT 59.014 37.037 0.00 0.00 0.00 1.73
2170 9408 9.327628 GTTGTAATCCTAACCTTCTTCCTATTC 57.672 37.037 0.00 0.00 0.00 1.75
2171 9409 8.030913 TGTAATCCTAACCTTCTTCCTATTCC 57.969 38.462 0.00 0.00 0.00 3.01
2172 9410 7.849904 TGTAATCCTAACCTTCTTCCTATTCCT 59.150 37.037 0.00 0.00 0.00 3.36
2173 9411 7.773099 AATCCTAACCTTCTTCCTATTCCTT 57.227 36.000 0.00 0.00 0.00 3.36
2174 9412 6.561519 TCCTAACCTTCTTCCTATTCCTTG 57.438 41.667 0.00 0.00 0.00 3.61
2175 9413 6.030082 TCCTAACCTTCTTCCTATTCCTTGT 58.970 40.000 0.00 0.00 0.00 3.16
2176 9414 6.504279 TCCTAACCTTCTTCCTATTCCTTGTT 59.496 38.462 0.00 0.00 0.00 2.83
2177 9415 6.824196 CCTAACCTTCTTCCTATTCCTTGTTC 59.176 42.308 0.00 0.00 0.00 3.18
2178 9416 6.455690 AACCTTCTTCCTATTCCTTGTTCT 57.544 37.500 0.00 0.00 0.00 3.01
2179 9417 7.569599 AACCTTCTTCCTATTCCTTGTTCTA 57.430 36.000 0.00 0.00 0.00 2.10
2180 9418 6.948589 ACCTTCTTCCTATTCCTTGTTCTAC 58.051 40.000 0.00 0.00 0.00 2.59
2181 9419 6.731448 ACCTTCTTCCTATTCCTTGTTCTACT 59.269 38.462 0.00 0.00 0.00 2.57
2182 9420 7.093245 ACCTTCTTCCTATTCCTTGTTCTACTC 60.093 40.741 0.00 0.00 0.00 2.59
2183 9421 7.093289 CCTTCTTCCTATTCCTTGTTCTACTCA 60.093 40.741 0.00 0.00 0.00 3.41
2184 9422 7.792364 TCTTCCTATTCCTTGTTCTACTCAA 57.208 36.000 0.00 0.00 0.00 3.02
2185 9423 8.202461 TCTTCCTATTCCTTGTTCTACTCAAA 57.798 34.615 0.00 0.00 0.00 2.69
2186 9424 8.095169 TCTTCCTATTCCTTGTTCTACTCAAAC 58.905 37.037 0.00 0.00 0.00 2.93
2187 9425 7.554959 TCCTATTCCTTGTTCTACTCAAACT 57.445 36.000 0.00 0.00 0.00 2.66
2188 9426 7.612677 TCCTATTCCTTGTTCTACTCAAACTC 58.387 38.462 0.00 0.00 0.00 3.01
2189 9427 6.819146 CCTATTCCTTGTTCTACTCAAACTCC 59.181 42.308 0.00 0.00 0.00 3.85
2190 9428 5.888982 TTCCTTGTTCTACTCAAACTCCT 57.111 39.130 0.00 0.00 0.00 3.69
2191 9429 5.888982 TCCTTGTTCTACTCAAACTCCTT 57.111 39.130 0.00 0.00 0.00 3.36
2192 9430 6.248569 TCCTTGTTCTACTCAAACTCCTTT 57.751 37.500 0.00 0.00 0.00 3.11
2193 9431 6.289064 TCCTTGTTCTACTCAAACTCCTTTC 58.711 40.000 0.00 0.00 0.00 2.62
2194 9432 6.099845 TCCTTGTTCTACTCAAACTCCTTTCT 59.900 38.462 0.00 0.00 0.00 2.52
2195 9433 6.768381 CCTTGTTCTACTCAAACTCCTTTCTT 59.232 38.462 0.00 0.00 0.00 2.52
2196 9434 7.041712 CCTTGTTCTACTCAAACTCCTTTCTTC 60.042 40.741 0.00 0.00 0.00 2.87
2197 9435 7.125792 TGTTCTACTCAAACTCCTTTCTTCT 57.874 36.000 0.00 0.00 0.00 2.85
2198 9436 7.565680 TGTTCTACTCAAACTCCTTTCTTCTT 58.434 34.615 0.00 0.00 0.00 2.52
2199 9437 8.701895 TGTTCTACTCAAACTCCTTTCTTCTTA 58.298 33.333 0.00 0.00 0.00 2.10
2200 9438 9.713713 GTTCTACTCAAACTCCTTTCTTCTTAT 57.286 33.333 0.00 0.00 0.00 1.73
2201 9439 9.930693 TTCTACTCAAACTCCTTTCTTCTTATC 57.069 33.333 0.00 0.00 0.00 1.75
2202 9440 9.315363 TCTACTCAAACTCCTTTCTTCTTATCT 57.685 33.333 0.00 0.00 0.00 1.98
2203 9441 9.936759 CTACTCAAACTCCTTTCTTCTTATCTT 57.063 33.333 0.00 0.00 0.00 2.40
2204 9442 8.614469 ACTCAAACTCCTTTCTTCTTATCTTG 57.386 34.615 0.00 0.00 0.00 3.02
2205 9443 8.214364 ACTCAAACTCCTTTCTTCTTATCTTGT 58.786 33.333 0.00 0.00 0.00 3.16
2206 9444 9.712305 CTCAAACTCCTTTCTTCTTATCTTGTA 57.288 33.333 0.00 0.00 0.00 2.41
2207 9445 9.490379 TCAAACTCCTTTCTTCTTATCTTGTAC 57.510 33.333 0.00 0.00 0.00 2.90
2208 9446 8.436200 CAAACTCCTTTCTTCTTATCTTGTACG 58.564 37.037 0.00 0.00 0.00 3.67
2209 9447 6.100668 ACTCCTTTCTTCTTATCTTGTACGC 58.899 40.000 0.00 0.00 0.00 4.42
2210 9448 5.416947 TCCTTTCTTCTTATCTTGTACGCC 58.583 41.667 0.00 0.00 0.00 5.68
2211 9449 5.046878 TCCTTTCTTCTTATCTTGTACGCCA 60.047 40.000 0.00 0.00 0.00 5.69
2212 9450 5.642063 CCTTTCTTCTTATCTTGTACGCCAA 59.358 40.000 0.00 0.00 0.00 4.52
2219 9457 1.875963 CTTGTACGCCAAGGCAAGG 59.124 57.895 12.19 0.00 45.70 3.61
2220 9458 2.200170 CTTGTACGCCAAGGCAAGGC 62.200 60.000 12.19 9.87 45.70 4.35
2226 9464 2.968206 CCAAGGCAAGGCTTCTGC 59.032 61.111 5.85 0.00 38.76 4.26
2241 9479 5.954296 GCTTCTGCCACACATCAATATAT 57.046 39.130 0.00 0.00 0.00 0.86
2243 9481 6.835914 GCTTCTGCCACACATCAATATATAC 58.164 40.000 0.00 0.00 0.00 1.47
2244 9482 6.401474 GCTTCTGCCACACATCAATATATACG 60.401 42.308 0.00 0.00 0.00 3.06
2245 9483 6.339587 TCTGCCACACATCAATATATACGA 57.660 37.500 0.00 0.00 0.00 3.43
2246 9484 6.389906 TCTGCCACACATCAATATATACGAG 58.610 40.000 0.00 0.00 0.00 4.18
2247 9485 6.208599 TCTGCCACACATCAATATATACGAGA 59.791 38.462 0.00 0.00 0.00 4.04
2248 9486 6.156519 TGCCACACATCAATATATACGAGAC 58.843 40.000 0.00 0.00 0.00 3.36
2249 9487 5.286320 GCCACACATCAATATATACGAGACG 59.714 44.000 0.00 0.00 0.00 4.18
2250 9488 5.286320 CCACACATCAATATATACGAGACGC 59.714 44.000 0.00 0.00 0.00 5.19
2252 9490 4.495828 CACATCAATATATACGAGACGCGG 59.504 45.833 12.47 0.00 46.49 6.46
2253 9491 3.127081 TCAATATATACGAGACGCGGC 57.873 47.619 12.47 7.86 46.49 6.53
2254 9492 2.745821 TCAATATATACGAGACGCGGCT 59.254 45.455 18.34 18.34 46.49 5.52
2255 9493 3.099362 CAATATATACGAGACGCGGCTC 58.901 50.000 32.29 32.29 46.49 4.70
2256 9494 1.081892 TATATACGAGACGCGGCTCC 58.918 55.000 35.04 18.05 46.49 4.70
2257 9495 1.584380 ATATACGAGACGCGGCTCCC 61.584 60.000 35.04 13.99 46.49 4.30
2261 9499 3.145551 GAGACGCGGCTCCCCTTA 61.146 66.667 32.06 0.00 0.00 2.69
2262 9500 2.682494 AGACGCGGCTCCCCTTAA 60.682 61.111 9.84 0.00 0.00 1.85
2263 9501 2.234913 GAGACGCGGCTCCCCTTAAA 62.235 60.000 32.06 0.00 0.00 1.52
2264 9502 1.376295 GACGCGGCTCCCCTTAAAA 60.376 57.895 12.47 0.00 0.00 1.52
2265 9503 1.366854 GACGCGGCTCCCCTTAAAAG 61.367 60.000 12.47 0.00 0.00 2.27
2266 9504 1.078708 CGCGGCTCCCCTTAAAAGA 60.079 57.895 0.00 0.00 0.00 2.52
2267 9505 1.090052 CGCGGCTCCCCTTAAAAGAG 61.090 60.000 0.00 0.00 0.00 2.85
2268 9506 0.035343 GCGGCTCCCCTTAAAAGAGT 60.035 55.000 0.00 0.00 0.00 3.24
2269 9507 1.208776 GCGGCTCCCCTTAAAAGAGTA 59.791 52.381 0.00 0.00 0.00 2.59
2270 9508 2.742204 GCGGCTCCCCTTAAAAGAGTAG 60.742 54.545 0.00 0.00 0.00 2.57
2271 9509 2.158943 CGGCTCCCCTTAAAAGAGTAGG 60.159 54.545 0.00 0.00 0.00 3.18
2272 9510 3.113043 GGCTCCCCTTAAAAGAGTAGGA 58.887 50.000 0.00 0.00 0.00 2.94
2273 9511 3.522343 GGCTCCCCTTAAAAGAGTAGGAA 59.478 47.826 0.00 0.00 0.00 3.36
2274 9512 4.515361 GCTCCCCTTAAAAGAGTAGGAAC 58.485 47.826 0.00 0.00 0.00 3.62
2275 9513 4.756502 CTCCCCTTAAAAGAGTAGGAACG 58.243 47.826 0.00 0.00 0.00 3.95
2276 9514 3.055602 TCCCCTTAAAAGAGTAGGAACGC 60.056 47.826 0.00 0.00 0.00 4.84
2277 9515 3.055312 CCCCTTAAAAGAGTAGGAACGCT 60.055 47.826 0.00 0.00 37.35 5.07
2278 9516 4.565028 CCCCTTAAAAGAGTAGGAACGCTT 60.565 45.833 0.00 0.00 46.22 4.68
2279 9517 5.337813 CCCCTTAAAAGAGTAGGAACGCTTA 60.338 44.000 0.00 0.00 43.88 3.09
2280 9518 6.346896 CCCTTAAAAGAGTAGGAACGCTTAT 58.653 40.000 0.00 0.00 43.88 1.73
2281 9519 6.822170 CCCTTAAAAGAGTAGGAACGCTTATT 59.178 38.462 0.00 0.00 43.88 1.40
2282 9520 7.983484 CCCTTAAAAGAGTAGGAACGCTTATTA 59.017 37.037 0.00 0.00 43.88 0.98
2283 9521 9.543783 CCTTAAAAGAGTAGGAACGCTTATTAT 57.456 33.333 0.00 0.00 43.88 1.28
2287 9525 9.668497 AAAAGAGTAGGAACGCTTATTATCTTT 57.332 29.630 0.00 0.00 43.88 2.52
2288 9526 8.874744 AAGAGTAGGAACGCTTATTATCTTTC 57.125 34.615 0.00 0.00 43.00 2.62
2289 9527 8.008513 AGAGTAGGAACGCTTATTATCTTTCA 57.991 34.615 0.00 0.00 30.81 2.69
2290 9528 8.643324 AGAGTAGGAACGCTTATTATCTTTCAT 58.357 33.333 0.00 0.00 30.81 2.57
2291 9529 8.594881 AGTAGGAACGCTTATTATCTTTCATG 57.405 34.615 0.00 0.00 0.00 3.07
2292 9530 6.867662 AGGAACGCTTATTATCTTTCATGG 57.132 37.500 0.00 0.00 0.00 3.66
2293 9531 6.357367 AGGAACGCTTATTATCTTTCATGGT 58.643 36.000 0.00 0.00 0.00 3.55
2294 9532 7.506114 AGGAACGCTTATTATCTTTCATGGTA 58.494 34.615 0.00 0.00 0.00 3.25
2295 9533 8.157476 AGGAACGCTTATTATCTTTCATGGTAT 58.843 33.333 0.00 0.00 0.00 2.73
2296 9534 8.443937 GGAACGCTTATTATCTTTCATGGTATC 58.556 37.037 0.00 0.00 0.00 2.24
2297 9535 8.902540 AACGCTTATTATCTTTCATGGTATCA 57.097 30.769 0.00 0.00 0.00 2.15
2298 9536 8.539770 ACGCTTATTATCTTTCATGGTATCAG 57.460 34.615 0.00 0.00 0.00 2.90
2299 9537 8.367911 ACGCTTATTATCTTTCATGGTATCAGA 58.632 33.333 0.00 0.00 0.00 3.27
2300 9538 8.867935 CGCTTATTATCTTTCATGGTATCAGAG 58.132 37.037 0.00 0.00 0.00 3.35
2301 9539 8.663911 GCTTATTATCTTTCATGGTATCAGAGC 58.336 37.037 0.00 0.00 0.00 4.09
2302 9540 9.160496 CTTATTATCTTTCATGGTATCAGAGCC 57.840 37.037 0.00 0.00 0.00 4.70
2303 9541 6.499106 TTATCTTTCATGGTATCAGAGCCA 57.501 37.500 0.00 0.00 39.33 4.75
2304 9542 4.142609 TCTTTCATGGTATCAGAGCCAC 57.857 45.455 0.00 0.00 37.62 5.01
2305 9543 3.118261 TCTTTCATGGTATCAGAGCCACC 60.118 47.826 0.00 0.00 37.62 4.61
2306 9544 2.180946 TCATGGTATCAGAGCCACCT 57.819 50.000 0.00 0.00 37.62 4.00
2307 9545 2.042464 TCATGGTATCAGAGCCACCTC 58.958 52.381 0.00 0.00 37.62 3.85
2309 9547 2.254152 TGGTATCAGAGCCACCTCTT 57.746 50.000 0.00 0.00 46.16 2.85
2310 9548 2.551270 TGGTATCAGAGCCACCTCTTT 58.449 47.619 0.00 0.00 46.16 2.52
2311 9549 2.912956 TGGTATCAGAGCCACCTCTTTT 59.087 45.455 0.00 0.00 46.16 2.27
2312 9550 3.055094 TGGTATCAGAGCCACCTCTTTTC 60.055 47.826 0.00 0.00 46.16 2.29
2313 9551 3.055094 GGTATCAGAGCCACCTCTTTTCA 60.055 47.826 0.00 0.00 46.16 2.69
2314 9552 4.384647 GGTATCAGAGCCACCTCTTTTCAT 60.385 45.833 0.00 0.00 46.16 2.57
2315 9553 5.163301 GGTATCAGAGCCACCTCTTTTCATA 60.163 44.000 0.00 0.00 46.16 2.15
2316 9554 4.207891 TCAGAGCCACCTCTTTTCATAC 57.792 45.455 0.00 0.00 46.16 2.39
2317 9555 3.582647 TCAGAGCCACCTCTTTTCATACA 59.417 43.478 0.00 0.00 46.16 2.29
2318 9556 4.225942 TCAGAGCCACCTCTTTTCATACAT 59.774 41.667 0.00 0.00 46.16 2.29
2319 9557 4.574013 CAGAGCCACCTCTTTTCATACATC 59.426 45.833 0.00 0.00 46.16 3.06
2320 9558 4.472833 AGAGCCACCTCTTTTCATACATCT 59.527 41.667 0.00 0.00 46.16 2.90
2321 9559 5.663106 AGAGCCACCTCTTTTCATACATCTA 59.337 40.000 0.00 0.00 46.16 1.98
2322 9560 5.923204 AGCCACCTCTTTTCATACATCTAG 58.077 41.667 0.00 0.00 0.00 2.43
2323 9561 4.513318 GCCACCTCTTTTCATACATCTAGC 59.487 45.833 0.00 0.00 0.00 3.42
2324 9562 5.059833 CCACCTCTTTTCATACATCTAGCC 58.940 45.833 0.00 0.00 0.00 3.93
2325 9563 5.396772 CCACCTCTTTTCATACATCTAGCCA 60.397 44.000 0.00 0.00 0.00 4.75
2326 9564 5.525378 CACCTCTTTTCATACATCTAGCCAC 59.475 44.000 0.00 0.00 0.00 5.01
2327 9565 5.189736 ACCTCTTTTCATACATCTAGCCACA 59.810 40.000 0.00 0.00 0.00 4.17
2328 9566 6.115446 CCTCTTTTCATACATCTAGCCACAA 58.885 40.000 0.00 0.00 0.00 3.33
2329 9567 6.599244 CCTCTTTTCATACATCTAGCCACAAA 59.401 38.462 0.00 0.00 0.00 2.83
2330 9568 7.377766 TCTTTTCATACATCTAGCCACAAAC 57.622 36.000 0.00 0.00 0.00 2.93
2331 9569 6.374333 TCTTTTCATACATCTAGCCACAAACC 59.626 38.462 0.00 0.00 0.00 3.27
2332 9570 4.835284 TCATACATCTAGCCACAAACCA 57.165 40.909 0.00 0.00 0.00 3.67
2333 9571 5.172687 TCATACATCTAGCCACAAACCAA 57.827 39.130 0.00 0.00 0.00 3.67
2334 9572 5.565509 TCATACATCTAGCCACAAACCAAA 58.434 37.500 0.00 0.00 0.00 3.28
2335 9573 6.007076 TCATACATCTAGCCACAAACCAAAA 58.993 36.000 0.00 0.00 0.00 2.44
2336 9574 4.584327 ACATCTAGCCACAAACCAAAAC 57.416 40.909 0.00 0.00 0.00 2.43
2337 9575 3.320826 ACATCTAGCCACAAACCAAAACC 59.679 43.478 0.00 0.00 0.00 3.27
2338 9576 2.312390 TCTAGCCACAAACCAAAACCC 58.688 47.619 0.00 0.00 0.00 4.11
2339 9577 2.091555 TCTAGCCACAAACCAAAACCCT 60.092 45.455 0.00 0.00 0.00 4.34
2340 9578 2.463047 AGCCACAAACCAAAACCCTA 57.537 45.000 0.00 0.00 0.00 3.53
2341 9579 2.316108 AGCCACAAACCAAAACCCTAG 58.684 47.619 0.00 0.00 0.00 3.02
2342 9580 2.091555 AGCCACAAACCAAAACCCTAGA 60.092 45.455 0.00 0.00 0.00 2.43
2343 9581 2.696187 GCCACAAACCAAAACCCTAGAA 59.304 45.455 0.00 0.00 0.00 2.10
2344 9582 3.491964 GCCACAAACCAAAACCCTAGAAC 60.492 47.826 0.00 0.00 0.00 3.01
2345 9583 3.069016 CCACAAACCAAAACCCTAGAACC 59.931 47.826 0.00 0.00 0.00 3.62
2346 9584 2.953648 ACAAACCAAAACCCTAGAACCG 59.046 45.455 0.00 0.00 0.00 4.44
2347 9585 1.612676 AACCAAAACCCTAGAACCGC 58.387 50.000 0.00 0.00 0.00 5.68
2348 9586 0.475044 ACCAAAACCCTAGAACCGCA 59.525 50.000 0.00 0.00 0.00 5.69
2349 9587 1.074889 ACCAAAACCCTAGAACCGCAT 59.925 47.619 0.00 0.00 0.00 4.73
2350 9588 2.306512 ACCAAAACCCTAGAACCGCATA 59.693 45.455 0.00 0.00 0.00 3.14
2351 9589 3.053917 ACCAAAACCCTAGAACCGCATAT 60.054 43.478 0.00 0.00 0.00 1.78
2352 9590 3.951680 CCAAAACCCTAGAACCGCATATT 59.048 43.478 0.00 0.00 0.00 1.28
2353 9591 5.127491 CCAAAACCCTAGAACCGCATATTA 58.873 41.667 0.00 0.00 0.00 0.98
2354 9592 5.768164 CCAAAACCCTAGAACCGCATATTAT 59.232 40.000 0.00 0.00 0.00 1.28
2355 9593 6.072673 CCAAAACCCTAGAACCGCATATTATC 60.073 42.308 0.00 0.00 0.00 1.75
2356 9594 5.818678 AACCCTAGAACCGCATATTATCA 57.181 39.130 0.00 0.00 0.00 2.15
2357 9595 6.374417 AACCCTAGAACCGCATATTATCAT 57.626 37.500 0.00 0.00 0.00 2.45
2358 9596 5.978814 ACCCTAGAACCGCATATTATCATC 58.021 41.667 0.00 0.00 0.00 2.92
2359 9597 5.483937 ACCCTAGAACCGCATATTATCATCA 59.516 40.000 0.00 0.00 0.00 3.07
2360 9598 5.812642 CCCTAGAACCGCATATTATCATCAC 59.187 44.000 0.00 0.00 0.00 3.06
2361 9599 5.812642 CCTAGAACCGCATATTATCATCACC 59.187 44.000 0.00 0.00 0.00 4.02
2362 9600 5.227569 AGAACCGCATATTATCATCACCA 57.772 39.130 0.00 0.00 0.00 4.17
2363 9601 5.809001 AGAACCGCATATTATCATCACCAT 58.191 37.500 0.00 0.00 0.00 3.55
2364 9602 5.645067 AGAACCGCATATTATCATCACCATG 59.355 40.000 0.00 0.00 0.00 3.66
2365 9603 4.264253 ACCGCATATTATCATCACCATGG 58.736 43.478 11.19 11.19 0.00 3.66
2366 9604 3.065786 CCGCATATTATCATCACCATGGC 59.934 47.826 13.04 0.00 0.00 4.40
2367 9605 3.943381 CGCATATTATCATCACCATGGCT 59.057 43.478 13.04 0.00 0.00 4.75
2368 9606 4.397103 CGCATATTATCATCACCATGGCTT 59.603 41.667 13.04 0.00 0.00 4.35
2369 9607 5.448225 CGCATATTATCATCACCATGGCTTC 60.448 44.000 13.04 0.00 0.00 3.86
2370 9608 5.651139 GCATATTATCATCACCATGGCTTCT 59.349 40.000 13.04 0.00 0.00 2.85
2371 9609 6.152323 GCATATTATCATCACCATGGCTTCTT 59.848 38.462 13.04 0.00 0.00 2.52
2372 9610 7.627939 GCATATTATCATCACCATGGCTTCTTC 60.628 40.741 13.04 0.00 0.00 2.87
2373 9611 3.657398 ATCATCACCATGGCTTCTTCA 57.343 42.857 13.04 0.00 0.00 3.02
2374 9612 2.995283 TCATCACCATGGCTTCTTCAG 58.005 47.619 13.04 0.00 0.00 3.02
2533 9771 3.543680 ACATAGCTGGCTTACAATCGT 57.456 42.857 0.00 0.00 0.00 3.73
2814 10052 0.108424 GACTCAGCAATCTCGCACCT 60.108 55.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 5.822278 TGCGCAAACATTGTTTTCTACTAA 58.178 33.333 8.16 0.00 0.00 2.24
18 19 5.425577 TGCGCAAACATTGTTTTCTACTA 57.574 34.783 8.16 0.00 0.00 1.82
23 24 6.551812 AAAAATTGCGCAAACATTGTTTTC 57.448 29.167 28.81 6.93 0.00 2.29
771 2425 0.105039 AGGCAGCATACTTCTACCGC 59.895 55.000 0.00 0.00 0.00 5.68
784 2445 1.078759 CACACTACGCACTAGGCAGC 61.079 60.000 0.00 0.00 45.17 5.25
785 2446 1.078759 GCACACTACGCACTAGGCAG 61.079 60.000 0.00 0.00 45.17 4.85
786 2447 1.080093 GCACACTACGCACTAGGCA 60.080 57.895 0.00 0.00 45.17 4.75
787 2448 0.460284 ATGCACACTACGCACTAGGC 60.460 55.000 0.00 0.00 43.35 3.93
788 2449 1.560923 GATGCACACTACGCACTAGG 58.439 55.000 0.00 0.00 43.35 3.02
789 2450 1.191944 CGATGCACACTACGCACTAG 58.808 55.000 0.00 0.00 43.35 2.57
790 2451 0.524414 ACGATGCACACTACGCACTA 59.476 50.000 0.00 0.00 43.35 2.74
796 2457 2.599082 GCACTTCTACGATGCACACTAC 59.401 50.000 0.00 0.00 39.23 2.73
869 2530 2.167398 TTGGGGTGCACGTCTCTAGC 62.167 60.000 11.45 0.00 0.00 3.42
871 2532 0.759959 TTTTGGGGTGCACGTCTCTA 59.240 50.000 11.45 0.00 0.00 2.43
872 2533 0.106918 TTTTTGGGGTGCACGTCTCT 60.107 50.000 11.45 0.00 0.00 3.10
874 2535 4.668151 TTTTTGGGGTGCACGTCT 57.332 50.000 11.45 0.00 0.00 4.18
1227 2916 1.282248 CGTGGAAGTACACCAGCACG 61.282 60.000 11.22 8.50 38.14 5.34
1711 3401 2.606519 AGCGGGTGGTCCAAGCTA 60.607 61.111 14.05 0.00 43.56 3.32
1861 3551 2.027625 GACAACCTCGACGGCCTTG 61.028 63.158 0.00 0.00 35.61 3.61
1903 9141 4.162690 GGCTGCCGGACGGAGAAT 62.163 66.667 15.99 0.00 37.50 2.40
1946 9184 3.197790 CCGCTTGATCACCCGCAG 61.198 66.667 0.00 0.00 0.00 5.18
1951 9189 0.389948 AGACGAACCGCTTGATCACC 60.390 55.000 0.00 0.00 0.00 4.02
1954 9192 2.186076 CTGTAGACGAACCGCTTGATC 58.814 52.381 0.00 0.00 0.00 2.92
1955 9193 1.736032 GCTGTAGACGAACCGCTTGAT 60.736 52.381 0.00 0.00 0.00 2.57
1969 9207 2.447887 CGCTCAGTTGCCGCTGTAG 61.448 63.158 4.83 3.34 37.70 2.74
1977 9215 1.230635 ACACATCACCGCTCAGTTGC 61.231 55.000 0.00 0.00 0.00 4.17
1979 9217 1.229428 CAACACATCACCGCTCAGTT 58.771 50.000 0.00 0.00 0.00 3.16
1980 9218 1.230635 GCAACACATCACCGCTCAGT 61.231 55.000 0.00 0.00 0.00 3.41
1988 9226 3.058983 TCAGTCAAATCGCAACACATCAC 60.059 43.478 0.00 0.00 0.00 3.06
1996 9234 2.669113 GCAAGCATCAGTCAAATCGCAA 60.669 45.455 0.00 0.00 0.00 4.85
1997 9235 1.135603 GCAAGCATCAGTCAAATCGCA 60.136 47.619 0.00 0.00 0.00 5.10
1998 9236 1.131883 AGCAAGCATCAGTCAAATCGC 59.868 47.619 0.00 0.00 0.00 4.58
1999 9237 3.168963 CAAGCAAGCATCAGTCAAATCG 58.831 45.455 0.00 0.00 0.00 3.34
2000 9238 4.170292 ACAAGCAAGCATCAGTCAAATC 57.830 40.909 0.00 0.00 0.00 2.17
2001 9239 4.304110 CAACAAGCAAGCATCAGTCAAAT 58.696 39.130 0.00 0.00 0.00 2.32
2002 9240 3.708890 CAACAAGCAAGCATCAGTCAAA 58.291 40.909 0.00 0.00 0.00 2.69
2003 9241 2.544277 GCAACAAGCAAGCATCAGTCAA 60.544 45.455 0.00 0.00 44.79 3.18
2004 9242 1.001048 GCAACAAGCAAGCATCAGTCA 60.001 47.619 0.00 0.00 44.79 3.41
2005 9243 1.694639 GCAACAAGCAAGCATCAGTC 58.305 50.000 0.00 0.00 44.79 3.51
2006 9244 3.879912 GCAACAAGCAAGCATCAGT 57.120 47.368 0.00 0.00 44.79 3.41
2023 9261 0.391597 CTGGATTTCCATGCCCATGC 59.608 55.000 0.00 0.00 46.46 4.06
2024 9262 1.784358 ACTGGATTTCCATGCCCATG 58.216 50.000 0.00 1.28 46.46 3.66
2025 9263 2.555732 AACTGGATTTCCATGCCCAT 57.444 45.000 0.00 0.00 46.46 4.00
2026 9264 2.311542 AGTAACTGGATTTCCATGCCCA 59.688 45.455 0.00 0.00 46.46 5.36
2027 9265 2.689983 CAGTAACTGGATTTCCATGCCC 59.310 50.000 0.00 0.00 46.46 5.36
2028 9266 3.620488 TCAGTAACTGGATTTCCATGCC 58.380 45.455 0.00 0.00 46.46 4.40
2029 9267 4.142381 GGTTCAGTAACTGGATTTCCATGC 60.142 45.833 0.00 0.00 46.46 4.06
2030 9268 5.256474 AGGTTCAGTAACTGGATTTCCATG 58.744 41.667 0.00 0.00 46.46 3.66
2031 9269 5.520748 AGGTTCAGTAACTGGATTTCCAT 57.479 39.130 0.00 0.00 46.46 3.41
2032 9270 4.993705 AGGTTCAGTAACTGGATTTCCA 57.006 40.909 0.00 0.00 44.78 3.53
2033 9271 5.875359 CACTAGGTTCAGTAACTGGATTTCC 59.125 44.000 0.00 0.00 35.81 3.13
2034 9272 6.698380 TCACTAGGTTCAGTAACTGGATTTC 58.302 40.000 0.00 0.00 35.81 2.17
2035 9273 6.681729 TCACTAGGTTCAGTAACTGGATTT 57.318 37.500 0.00 0.00 35.81 2.17
2036 9274 6.644347 CATCACTAGGTTCAGTAACTGGATT 58.356 40.000 0.00 0.00 35.81 3.01
2037 9275 5.395768 GCATCACTAGGTTCAGTAACTGGAT 60.396 44.000 0.00 0.00 35.81 3.41
2038 9276 4.081642 GCATCACTAGGTTCAGTAACTGGA 60.082 45.833 0.00 0.00 35.81 3.86
2039 9277 4.184629 GCATCACTAGGTTCAGTAACTGG 58.815 47.826 0.00 0.00 35.81 4.00
2040 9278 4.820897 TGCATCACTAGGTTCAGTAACTG 58.179 43.478 0.00 0.00 35.81 3.16
2041 9279 5.683876 ATGCATCACTAGGTTCAGTAACT 57.316 39.130 0.00 0.00 35.81 2.24
2042 9280 6.743575 AAATGCATCACTAGGTTCAGTAAC 57.256 37.500 0.00 0.00 34.66 2.50
2043 9281 6.939730 TCAAAATGCATCACTAGGTTCAGTAA 59.060 34.615 0.00 0.00 0.00 2.24
2044 9282 6.472016 TCAAAATGCATCACTAGGTTCAGTA 58.528 36.000 0.00 0.00 0.00 2.74
2045 9283 5.316167 TCAAAATGCATCACTAGGTTCAGT 58.684 37.500 0.00 0.00 0.00 3.41
2046 9284 5.885230 TCAAAATGCATCACTAGGTTCAG 57.115 39.130 0.00 0.00 0.00 3.02
2047 9285 6.198650 CATCAAAATGCATCACTAGGTTCA 57.801 37.500 0.00 0.00 0.00 3.18
2065 9303 9.781834 CGTTTATATTTTAAGAACTGGCATCAA 57.218 29.630 0.00 0.00 0.00 2.57
2066 9304 9.168451 TCGTTTATATTTTAAGAACTGGCATCA 57.832 29.630 0.00 0.00 0.00 3.07
2067 9305 9.651718 CTCGTTTATATTTTAAGAACTGGCATC 57.348 33.333 0.00 0.00 0.00 3.91
2068 9306 8.129211 GCTCGTTTATATTTTAAGAACTGGCAT 58.871 33.333 0.00 0.00 0.00 4.40
2069 9307 7.119992 TGCTCGTTTATATTTTAAGAACTGGCA 59.880 33.333 0.00 0.00 0.00 4.92
2070 9308 7.469260 TGCTCGTTTATATTTTAAGAACTGGC 58.531 34.615 0.00 0.00 0.00 4.85
2071 9309 8.879759 TCTGCTCGTTTATATTTTAAGAACTGG 58.120 33.333 0.00 0.00 0.00 4.00
2074 9312 9.486857 GGTTCTGCTCGTTTATATTTTAAGAAC 57.513 33.333 0.00 0.00 39.21 3.01
2075 9313 8.385111 CGGTTCTGCTCGTTTATATTTTAAGAA 58.615 33.333 0.00 0.00 0.00 2.52
2076 9314 7.464977 GCGGTTCTGCTCGTTTATATTTTAAGA 60.465 37.037 0.00 0.00 0.00 2.10
2077 9315 6.627671 GCGGTTCTGCTCGTTTATATTTTAAG 59.372 38.462 0.00 0.00 0.00 1.85
2078 9316 6.092396 TGCGGTTCTGCTCGTTTATATTTTAA 59.908 34.615 5.23 0.00 35.36 1.52
2079 9317 5.581479 TGCGGTTCTGCTCGTTTATATTTTA 59.419 36.000 5.23 0.00 35.36 1.52
2080 9318 4.393680 TGCGGTTCTGCTCGTTTATATTTT 59.606 37.500 5.23 0.00 35.36 1.82
2081 9319 3.936453 TGCGGTTCTGCTCGTTTATATTT 59.064 39.130 5.23 0.00 35.36 1.40
2082 9320 3.308866 GTGCGGTTCTGCTCGTTTATATT 59.691 43.478 5.23 0.00 35.36 1.28
2083 9321 2.864343 GTGCGGTTCTGCTCGTTTATAT 59.136 45.455 5.23 0.00 35.36 0.86
2084 9322 2.094390 AGTGCGGTTCTGCTCGTTTATA 60.094 45.455 5.23 0.00 35.36 0.98
2085 9323 1.076332 GTGCGGTTCTGCTCGTTTAT 58.924 50.000 5.23 0.00 35.36 1.40
2086 9324 0.032952 AGTGCGGTTCTGCTCGTTTA 59.967 50.000 5.23 0.00 35.36 2.01
2087 9325 1.227556 AGTGCGGTTCTGCTCGTTT 60.228 52.632 5.23 0.00 35.36 3.60
2088 9326 1.956170 CAGTGCGGTTCTGCTCGTT 60.956 57.895 5.23 0.00 35.36 3.85
2089 9327 2.356313 CAGTGCGGTTCTGCTCGT 60.356 61.111 5.23 0.00 35.36 4.18
2090 9328 3.114616 CCAGTGCGGTTCTGCTCG 61.115 66.667 5.23 0.00 35.36 5.03
2091 9329 2.731691 TTCCCAGTGCGGTTCTGCTC 62.732 60.000 5.23 1.69 35.36 4.26
2092 9330 2.129555 ATTCCCAGTGCGGTTCTGCT 62.130 55.000 5.23 0.00 35.36 4.24
2093 9331 1.648467 GATTCCCAGTGCGGTTCTGC 61.648 60.000 0.00 0.00 0.00 4.26
2094 9332 0.036010 AGATTCCCAGTGCGGTTCTG 60.036 55.000 0.00 0.00 0.00 3.02
2095 9333 0.036010 CAGATTCCCAGTGCGGTTCT 60.036 55.000 0.00 0.00 0.00 3.01
2096 9334 1.026718 CCAGATTCCCAGTGCGGTTC 61.027 60.000 0.00 0.00 0.00 3.62
2097 9335 1.002134 CCAGATTCCCAGTGCGGTT 60.002 57.895 0.00 0.00 0.00 4.44
2098 9336 2.671070 CCAGATTCCCAGTGCGGT 59.329 61.111 0.00 0.00 0.00 5.68
2099 9337 1.987807 ATCCCAGATTCCCAGTGCGG 61.988 60.000 0.00 0.00 0.00 5.69
2100 9338 0.107017 AATCCCAGATTCCCAGTGCG 60.107 55.000 0.00 0.00 0.00 5.34
2101 9339 1.753073 CAAATCCCAGATTCCCAGTGC 59.247 52.381 0.00 0.00 0.00 4.40
2102 9340 3.091633 ACAAATCCCAGATTCCCAGTG 57.908 47.619 0.00 0.00 0.00 3.66
2103 9341 3.833559 AACAAATCCCAGATTCCCAGT 57.166 42.857 0.00 0.00 0.00 4.00
2104 9342 5.104360 TCTCTAACAAATCCCAGATTCCCAG 60.104 44.000 0.00 0.00 0.00 4.45
2105 9343 4.788075 TCTCTAACAAATCCCAGATTCCCA 59.212 41.667 0.00 0.00 0.00 4.37
2106 9344 5.373812 TCTCTAACAAATCCCAGATTCCC 57.626 43.478 0.00 0.00 0.00 3.97
2107 9345 9.579932 AATATTCTCTAACAAATCCCAGATTCC 57.420 33.333 0.00 0.00 0.00 3.01
2112 9350 9.838339 ACAGTAATATTCTCTAACAAATCCCAG 57.162 33.333 0.00 0.00 0.00 4.45
2131 9369 9.538508 GTTAGGATTACAACGGATTACAGTAAT 57.461 33.333 5.43 5.43 37.90 1.89
2132 9370 7.981225 GGTTAGGATTACAACGGATTACAGTAA 59.019 37.037 0.00 0.00 0.00 2.24
2133 9371 7.342799 AGGTTAGGATTACAACGGATTACAGTA 59.657 37.037 0.00 0.00 0.00 2.74
2134 9372 6.155737 AGGTTAGGATTACAACGGATTACAGT 59.844 38.462 0.00 0.00 0.00 3.55
2135 9373 6.579865 AGGTTAGGATTACAACGGATTACAG 58.420 40.000 0.00 0.00 0.00 2.74
2136 9374 6.549433 AGGTTAGGATTACAACGGATTACA 57.451 37.500 0.00 0.00 0.00 2.41
2137 9375 7.270779 AGAAGGTTAGGATTACAACGGATTAC 58.729 38.462 0.00 0.00 0.00 1.89
2138 9376 7.427989 AGAAGGTTAGGATTACAACGGATTA 57.572 36.000 0.00 0.00 0.00 1.75
2139 9377 6.309389 AGAAGGTTAGGATTACAACGGATT 57.691 37.500 0.00 0.00 0.00 3.01
2140 9378 5.952347 AGAAGGTTAGGATTACAACGGAT 57.048 39.130 0.00 0.00 0.00 4.18
2141 9379 5.337813 GGAAGAAGGTTAGGATTACAACGGA 60.338 44.000 0.00 0.00 0.00 4.69
2142 9380 4.874396 GGAAGAAGGTTAGGATTACAACGG 59.126 45.833 0.00 0.00 0.00 4.44
2143 9381 5.731591 AGGAAGAAGGTTAGGATTACAACG 58.268 41.667 0.00 0.00 0.00 4.10
2144 9382 9.327628 GAATAGGAAGAAGGTTAGGATTACAAC 57.672 37.037 0.00 0.00 0.00 3.32
2145 9383 8.491958 GGAATAGGAAGAAGGTTAGGATTACAA 58.508 37.037 0.00 0.00 0.00 2.41
2146 9384 7.849904 AGGAATAGGAAGAAGGTTAGGATTACA 59.150 37.037 0.00 0.00 0.00 2.41
2147 9385 8.265108 AGGAATAGGAAGAAGGTTAGGATTAC 57.735 38.462 0.00 0.00 0.00 1.89
2148 9386 8.714906 CAAGGAATAGGAAGAAGGTTAGGATTA 58.285 37.037 0.00 0.00 0.00 1.75
2149 9387 7.184753 ACAAGGAATAGGAAGAAGGTTAGGATT 59.815 37.037 0.00 0.00 0.00 3.01
2150 9388 6.678857 ACAAGGAATAGGAAGAAGGTTAGGAT 59.321 38.462 0.00 0.00 0.00 3.24
2151 9389 6.030082 ACAAGGAATAGGAAGAAGGTTAGGA 58.970 40.000 0.00 0.00 0.00 2.94
2152 9390 6.314899 ACAAGGAATAGGAAGAAGGTTAGG 57.685 41.667 0.00 0.00 0.00 2.69
2153 9391 7.625469 AGAACAAGGAATAGGAAGAAGGTTAG 58.375 38.462 0.00 0.00 0.00 2.34
2154 9392 7.569599 AGAACAAGGAATAGGAAGAAGGTTA 57.430 36.000 0.00 0.00 0.00 2.85
2155 9393 6.455690 AGAACAAGGAATAGGAAGAAGGTT 57.544 37.500 0.00 0.00 0.00 3.50
2156 9394 6.731448 AGTAGAACAAGGAATAGGAAGAAGGT 59.269 38.462 0.00 0.00 0.00 3.50
2157 9395 7.093289 TGAGTAGAACAAGGAATAGGAAGAAGG 60.093 40.741 0.00 0.00 0.00 3.46
2158 9396 7.841956 TGAGTAGAACAAGGAATAGGAAGAAG 58.158 38.462 0.00 0.00 0.00 2.85
2159 9397 7.792364 TGAGTAGAACAAGGAATAGGAAGAA 57.208 36.000 0.00 0.00 0.00 2.52
2160 9398 7.792364 TTGAGTAGAACAAGGAATAGGAAGA 57.208 36.000 0.00 0.00 0.00 2.87
2161 9399 8.097662 AGTTTGAGTAGAACAAGGAATAGGAAG 58.902 37.037 0.00 0.00 0.00 3.46
2162 9400 7.974504 AGTTTGAGTAGAACAAGGAATAGGAA 58.025 34.615 0.00 0.00 0.00 3.36
2163 9401 7.310485 GGAGTTTGAGTAGAACAAGGAATAGGA 60.310 40.741 0.00 0.00 0.00 2.94
2164 9402 6.819146 GGAGTTTGAGTAGAACAAGGAATAGG 59.181 42.308 0.00 0.00 0.00 2.57
2165 9403 7.616313 AGGAGTTTGAGTAGAACAAGGAATAG 58.384 38.462 0.00 0.00 0.00 1.73
2166 9404 7.554959 AGGAGTTTGAGTAGAACAAGGAATA 57.445 36.000 0.00 0.00 0.00 1.75
2167 9405 6.441088 AGGAGTTTGAGTAGAACAAGGAAT 57.559 37.500 0.00 0.00 0.00 3.01
2168 9406 5.888982 AGGAGTTTGAGTAGAACAAGGAA 57.111 39.130 0.00 0.00 0.00 3.36
2169 9407 5.888982 AAGGAGTTTGAGTAGAACAAGGA 57.111 39.130 0.00 0.00 0.00 3.36
2170 9408 6.292150 AGAAAGGAGTTTGAGTAGAACAAGG 58.708 40.000 0.00 0.00 0.00 3.61
2171 9409 7.713073 AGAAGAAAGGAGTTTGAGTAGAACAAG 59.287 37.037 0.00 0.00 0.00 3.16
2172 9410 7.565680 AGAAGAAAGGAGTTTGAGTAGAACAA 58.434 34.615 0.00 0.00 0.00 2.83
2173 9411 7.125792 AGAAGAAAGGAGTTTGAGTAGAACA 57.874 36.000 0.00 0.00 0.00 3.18
2174 9412 9.713713 ATAAGAAGAAAGGAGTTTGAGTAGAAC 57.286 33.333 0.00 0.00 0.00 3.01
2175 9413 9.930693 GATAAGAAGAAAGGAGTTTGAGTAGAA 57.069 33.333 0.00 0.00 0.00 2.10
2176 9414 9.315363 AGATAAGAAGAAAGGAGTTTGAGTAGA 57.685 33.333 0.00 0.00 0.00 2.59
2177 9415 9.936759 AAGATAAGAAGAAAGGAGTTTGAGTAG 57.063 33.333 0.00 0.00 0.00 2.57
2178 9416 9.712305 CAAGATAAGAAGAAAGGAGTTTGAGTA 57.288 33.333 0.00 0.00 0.00 2.59
2179 9417 8.214364 ACAAGATAAGAAGAAAGGAGTTTGAGT 58.786 33.333 0.00 0.00 0.00 3.41
2180 9418 8.614469 ACAAGATAAGAAGAAAGGAGTTTGAG 57.386 34.615 0.00 0.00 0.00 3.02
2181 9419 9.490379 GTACAAGATAAGAAGAAAGGAGTTTGA 57.510 33.333 0.00 0.00 0.00 2.69
2182 9420 8.436200 CGTACAAGATAAGAAGAAAGGAGTTTG 58.564 37.037 0.00 0.00 0.00 2.93
2183 9421 7.117956 GCGTACAAGATAAGAAGAAAGGAGTTT 59.882 37.037 0.00 0.00 0.00 2.66
2184 9422 6.590677 GCGTACAAGATAAGAAGAAAGGAGTT 59.409 38.462 0.00 0.00 0.00 3.01
2185 9423 6.100668 GCGTACAAGATAAGAAGAAAGGAGT 58.899 40.000 0.00 0.00 0.00 3.85
2186 9424 5.520649 GGCGTACAAGATAAGAAGAAAGGAG 59.479 44.000 0.00 0.00 0.00 3.69
2187 9425 5.046878 TGGCGTACAAGATAAGAAGAAAGGA 60.047 40.000 0.00 0.00 0.00 3.36
2188 9426 5.175859 TGGCGTACAAGATAAGAAGAAAGG 58.824 41.667 0.00 0.00 0.00 3.11
2189 9427 6.721571 TTGGCGTACAAGATAAGAAGAAAG 57.278 37.500 0.00 0.00 33.18 2.62
2202 9440 2.265182 GCCTTGCCTTGGCGTACAA 61.265 57.895 7.18 0.00 41.03 2.41
2203 9441 2.671619 GCCTTGCCTTGGCGTACA 60.672 61.111 7.18 0.00 41.03 2.90
2209 9447 2.968206 GCAGAAGCCTTGCCTTGG 59.032 61.111 0.00 0.00 33.58 3.61
2219 9457 5.954296 ATATATTGATGTGTGGCAGAAGC 57.046 39.130 0.00 0.00 41.10 3.86
2220 9458 6.868339 TCGTATATATTGATGTGTGGCAGAAG 59.132 38.462 0.00 0.00 0.00 2.85
2221 9459 6.754193 TCGTATATATTGATGTGTGGCAGAA 58.246 36.000 0.00 0.00 0.00 3.02
2222 9460 6.208599 TCTCGTATATATTGATGTGTGGCAGA 59.791 38.462 0.00 0.00 0.00 4.26
2223 9461 6.309009 GTCTCGTATATATTGATGTGTGGCAG 59.691 42.308 0.00 0.00 0.00 4.85
2224 9462 6.156519 GTCTCGTATATATTGATGTGTGGCA 58.843 40.000 0.00 0.00 0.00 4.92
2225 9463 5.286320 CGTCTCGTATATATTGATGTGTGGC 59.714 44.000 0.00 0.00 0.00 5.01
2226 9464 5.286320 GCGTCTCGTATATATTGATGTGTGG 59.714 44.000 0.00 0.00 0.00 4.17
2227 9465 5.002561 CGCGTCTCGTATATATTGATGTGTG 59.997 44.000 0.00 0.00 0.00 3.82
2228 9466 5.086727 CGCGTCTCGTATATATTGATGTGT 58.913 41.667 0.00 0.00 0.00 3.72
2229 9467 4.495828 CCGCGTCTCGTATATATTGATGTG 59.504 45.833 4.92 0.00 36.19 3.21
2230 9468 4.659088 CCGCGTCTCGTATATATTGATGT 58.341 43.478 4.92 0.00 36.19 3.06
2231 9469 3.482472 GCCGCGTCTCGTATATATTGATG 59.518 47.826 4.92 0.00 36.19 3.07
2232 9470 3.377485 AGCCGCGTCTCGTATATATTGAT 59.623 43.478 4.92 0.00 36.19 2.57
2233 9471 2.745821 AGCCGCGTCTCGTATATATTGA 59.254 45.455 4.92 0.00 36.19 2.57
2234 9472 3.099362 GAGCCGCGTCTCGTATATATTG 58.901 50.000 0.00 0.00 36.19 1.90
2235 9473 2.097142 GGAGCCGCGTCTCGTATATATT 59.903 50.000 11.45 0.00 36.19 1.28
2236 9474 1.669779 GGAGCCGCGTCTCGTATATAT 59.330 52.381 11.45 0.00 36.19 0.86
2237 9475 1.081892 GGAGCCGCGTCTCGTATATA 58.918 55.000 11.45 0.00 36.19 0.86
2238 9476 1.584380 GGGAGCCGCGTCTCGTATAT 61.584 60.000 11.45 0.00 36.19 0.86
2239 9477 2.256591 GGGAGCCGCGTCTCGTATA 61.257 63.158 11.45 0.00 36.19 1.47
2240 9478 3.593794 GGGAGCCGCGTCTCGTAT 61.594 66.667 11.45 0.00 36.19 3.06
2244 9482 2.234913 TTTAAGGGGAGCCGCGTCTC 62.235 60.000 9.01 9.01 0.00 3.36
2245 9483 1.833787 TTTTAAGGGGAGCCGCGTCT 61.834 55.000 4.92 0.00 0.00 4.18
2246 9484 1.366854 CTTTTAAGGGGAGCCGCGTC 61.367 60.000 4.92 0.00 0.00 5.19
2247 9485 1.376812 CTTTTAAGGGGAGCCGCGT 60.377 57.895 4.92 0.00 0.00 6.01
2248 9486 1.078708 TCTTTTAAGGGGAGCCGCG 60.079 57.895 0.00 0.00 0.00 6.46
2249 9487 0.035343 ACTCTTTTAAGGGGAGCCGC 60.035 55.000 0.00 0.00 0.00 6.53
2250 9488 2.158943 CCTACTCTTTTAAGGGGAGCCG 60.159 54.545 0.00 0.00 36.03 5.52
2251 9489 3.113043 TCCTACTCTTTTAAGGGGAGCC 58.887 50.000 0.00 0.00 36.03 4.70
2252 9490 4.515361 GTTCCTACTCTTTTAAGGGGAGC 58.485 47.826 0.00 0.00 36.03 4.70
2253 9491 4.756502 CGTTCCTACTCTTTTAAGGGGAG 58.243 47.826 0.00 0.00 37.20 4.30
2254 9492 3.055602 GCGTTCCTACTCTTTTAAGGGGA 60.056 47.826 0.00 0.00 0.00 4.81
2255 9493 3.055312 AGCGTTCCTACTCTTTTAAGGGG 60.055 47.826 0.00 0.00 0.00 4.79
2256 9494 4.203654 AGCGTTCCTACTCTTTTAAGGG 57.796 45.455 0.00 0.00 0.00 3.95
2257 9495 7.845066 AATAAGCGTTCCTACTCTTTTAAGG 57.155 36.000 0.00 0.00 32.01 2.69
2261 9499 9.668497 AAAGATAATAAGCGTTCCTACTCTTTT 57.332 29.630 0.00 0.00 32.01 2.27
2262 9500 9.315525 GAAAGATAATAAGCGTTCCTACTCTTT 57.684 33.333 0.00 0.00 32.01 2.52
2263 9501 8.475639 TGAAAGATAATAAGCGTTCCTACTCTT 58.524 33.333 0.00 0.00 34.01 2.85
2264 9502 8.008513 TGAAAGATAATAAGCGTTCCTACTCT 57.991 34.615 0.00 0.00 29.77 3.24
2265 9503 8.704234 CATGAAAGATAATAAGCGTTCCTACTC 58.296 37.037 0.00 0.00 29.77 2.59
2266 9504 7.657761 CCATGAAAGATAATAAGCGTTCCTACT 59.342 37.037 0.00 0.00 29.77 2.57
2267 9505 7.441458 ACCATGAAAGATAATAAGCGTTCCTAC 59.559 37.037 0.00 0.00 29.77 3.18
2268 9506 7.506114 ACCATGAAAGATAATAAGCGTTCCTA 58.494 34.615 0.00 0.00 29.77 2.94
2269 9507 6.357367 ACCATGAAAGATAATAAGCGTTCCT 58.643 36.000 0.00 0.00 29.77 3.36
2270 9508 6.619801 ACCATGAAAGATAATAAGCGTTCC 57.380 37.500 0.00 0.00 29.77 3.62
2271 9509 8.988934 TGATACCATGAAAGATAATAAGCGTTC 58.011 33.333 0.00 0.00 31.27 3.95
2272 9510 8.902540 TGATACCATGAAAGATAATAAGCGTT 57.097 30.769 0.00 0.00 0.00 4.84
2273 9511 8.367911 TCTGATACCATGAAAGATAATAAGCGT 58.632 33.333 0.00 0.00 0.00 5.07
2274 9512 8.763049 TCTGATACCATGAAAGATAATAAGCG 57.237 34.615 0.00 0.00 0.00 4.68
2275 9513 8.663911 GCTCTGATACCATGAAAGATAATAAGC 58.336 37.037 0.00 0.00 0.00 3.09
2276 9514 9.160496 GGCTCTGATACCATGAAAGATAATAAG 57.840 37.037 0.00 0.00 0.00 1.73
2277 9515 8.659527 TGGCTCTGATACCATGAAAGATAATAA 58.340 33.333 0.00 0.00 0.00 1.40
2278 9516 8.097038 GTGGCTCTGATACCATGAAAGATAATA 58.903 37.037 0.00 0.00 38.46 0.98
2279 9517 6.939163 GTGGCTCTGATACCATGAAAGATAAT 59.061 38.462 0.00 0.00 38.46 1.28
2280 9518 6.291377 GTGGCTCTGATACCATGAAAGATAA 58.709 40.000 0.00 0.00 38.46 1.75
2281 9519 5.221722 GGTGGCTCTGATACCATGAAAGATA 60.222 44.000 0.00 0.00 38.46 1.98
2282 9520 4.445448 GGTGGCTCTGATACCATGAAAGAT 60.445 45.833 0.00 0.00 38.46 2.40
2283 9521 3.118261 GGTGGCTCTGATACCATGAAAGA 60.118 47.826 0.00 0.00 38.46 2.52
2284 9522 3.118112 AGGTGGCTCTGATACCATGAAAG 60.118 47.826 0.00 0.00 38.46 2.62
2285 9523 2.846206 AGGTGGCTCTGATACCATGAAA 59.154 45.455 0.00 0.00 38.46 2.69
2286 9524 2.435805 GAGGTGGCTCTGATACCATGAA 59.564 50.000 0.00 0.00 38.46 2.57
2287 9525 2.042464 GAGGTGGCTCTGATACCATGA 58.958 52.381 0.00 0.00 38.46 3.07
2288 9526 2.045524 AGAGGTGGCTCTGATACCATG 58.954 52.381 3.23 0.00 38.46 3.66
2289 9527 2.485966 AGAGGTGGCTCTGATACCAT 57.514 50.000 3.23 0.00 38.46 3.55
2290 9528 2.254152 AAGAGGTGGCTCTGATACCA 57.746 50.000 0.00 2.82 36.94 3.25
2291 9529 3.055094 TGAAAAGAGGTGGCTCTGATACC 60.055 47.826 0.00 0.00 33.39 2.73
2292 9530 4.207891 TGAAAAGAGGTGGCTCTGATAC 57.792 45.455 0.00 0.00 33.39 2.24
2293 9531 5.425217 TGTATGAAAAGAGGTGGCTCTGATA 59.575 40.000 0.00 0.00 33.39 2.15
2294 9532 4.225942 TGTATGAAAAGAGGTGGCTCTGAT 59.774 41.667 0.00 0.00 33.39 2.90
2295 9533 3.582647 TGTATGAAAAGAGGTGGCTCTGA 59.417 43.478 0.00 0.00 33.39 3.27
2296 9534 3.942829 TGTATGAAAAGAGGTGGCTCTG 58.057 45.455 0.00 0.00 33.39 3.35
2297 9535 4.472833 AGATGTATGAAAAGAGGTGGCTCT 59.527 41.667 0.00 0.00 34.76 4.09
2298 9536 4.775236 AGATGTATGAAAAGAGGTGGCTC 58.225 43.478 0.00 0.00 0.00 4.70
2299 9537 4.851639 AGATGTATGAAAAGAGGTGGCT 57.148 40.909 0.00 0.00 0.00 4.75
2300 9538 4.513318 GCTAGATGTATGAAAAGAGGTGGC 59.487 45.833 0.00 0.00 0.00 5.01
2301 9539 5.059833 GGCTAGATGTATGAAAAGAGGTGG 58.940 45.833 0.00 0.00 0.00 4.61
2302 9540 5.525378 GTGGCTAGATGTATGAAAAGAGGTG 59.475 44.000 0.00 0.00 0.00 4.00
2303 9541 5.189736 TGTGGCTAGATGTATGAAAAGAGGT 59.810 40.000 0.00 0.00 0.00 3.85
2304 9542 5.674525 TGTGGCTAGATGTATGAAAAGAGG 58.325 41.667 0.00 0.00 0.00 3.69
2305 9543 7.414540 GGTTTGTGGCTAGATGTATGAAAAGAG 60.415 40.741 0.00 0.00 0.00 2.85
2306 9544 6.374333 GGTTTGTGGCTAGATGTATGAAAAGA 59.626 38.462 0.00 0.00 0.00 2.52
2307 9545 6.150976 TGGTTTGTGGCTAGATGTATGAAAAG 59.849 38.462 0.00 0.00 0.00 2.27
2308 9546 6.007076 TGGTTTGTGGCTAGATGTATGAAAA 58.993 36.000 0.00 0.00 0.00 2.29
2309 9547 5.565509 TGGTTTGTGGCTAGATGTATGAAA 58.434 37.500 0.00 0.00 0.00 2.69
2310 9548 5.172687 TGGTTTGTGGCTAGATGTATGAA 57.827 39.130 0.00 0.00 0.00 2.57
2311 9549 4.835284 TGGTTTGTGGCTAGATGTATGA 57.165 40.909 0.00 0.00 0.00 2.15
2312 9550 5.895636 TTTGGTTTGTGGCTAGATGTATG 57.104 39.130 0.00 0.00 0.00 2.39
2313 9551 5.185056 GGTTTTGGTTTGTGGCTAGATGTAT 59.815 40.000 0.00 0.00 0.00 2.29
2314 9552 4.521256 GGTTTTGGTTTGTGGCTAGATGTA 59.479 41.667 0.00 0.00 0.00 2.29
2315 9553 3.320826 GGTTTTGGTTTGTGGCTAGATGT 59.679 43.478 0.00 0.00 0.00 3.06
2316 9554 3.306019 GGGTTTTGGTTTGTGGCTAGATG 60.306 47.826 0.00 0.00 0.00 2.90
2317 9555 2.897326 GGGTTTTGGTTTGTGGCTAGAT 59.103 45.455 0.00 0.00 0.00 1.98
2318 9556 2.091555 AGGGTTTTGGTTTGTGGCTAGA 60.092 45.455 0.00 0.00 0.00 2.43
2319 9557 2.316108 AGGGTTTTGGTTTGTGGCTAG 58.684 47.619 0.00 0.00 0.00 3.42
2320 9558 2.463047 AGGGTTTTGGTTTGTGGCTA 57.537 45.000 0.00 0.00 0.00 3.93
2321 9559 2.091555 TCTAGGGTTTTGGTTTGTGGCT 60.092 45.455 0.00 0.00 0.00 4.75
2322 9560 2.312390 TCTAGGGTTTTGGTTTGTGGC 58.688 47.619 0.00 0.00 0.00 5.01
2323 9561 3.069016 GGTTCTAGGGTTTTGGTTTGTGG 59.931 47.826 0.00 0.00 0.00 4.17
2324 9562 3.243267 CGGTTCTAGGGTTTTGGTTTGTG 60.243 47.826 0.00 0.00 0.00 3.33
2325 9563 2.953648 CGGTTCTAGGGTTTTGGTTTGT 59.046 45.455 0.00 0.00 0.00 2.83
2326 9564 2.287970 GCGGTTCTAGGGTTTTGGTTTG 60.288 50.000 0.00 0.00 0.00 2.93
2327 9565 1.958579 GCGGTTCTAGGGTTTTGGTTT 59.041 47.619 0.00 0.00 0.00 3.27
2328 9566 1.133730 TGCGGTTCTAGGGTTTTGGTT 60.134 47.619 0.00 0.00 0.00 3.67
2329 9567 0.475044 TGCGGTTCTAGGGTTTTGGT 59.525 50.000 0.00 0.00 0.00 3.67
2330 9568 1.834188 ATGCGGTTCTAGGGTTTTGG 58.166 50.000 0.00 0.00 0.00 3.28
2331 9569 6.485313 TGATAATATGCGGTTCTAGGGTTTTG 59.515 38.462 0.00 0.00 0.00 2.44
2332 9570 6.597562 TGATAATATGCGGTTCTAGGGTTTT 58.402 36.000 0.00 0.00 0.00 2.43
2333 9571 6.182507 TGATAATATGCGGTTCTAGGGTTT 57.817 37.500 0.00 0.00 0.00 3.27
2334 9572 5.818678 TGATAATATGCGGTTCTAGGGTT 57.181 39.130 0.00 0.00 0.00 4.11
2335 9573 5.483937 TGATGATAATATGCGGTTCTAGGGT 59.516 40.000 0.00 0.00 0.00 4.34
2336 9574 5.812642 GTGATGATAATATGCGGTTCTAGGG 59.187 44.000 0.00 0.00 0.00 3.53
2337 9575 5.812642 GGTGATGATAATATGCGGTTCTAGG 59.187 44.000 0.00 0.00 0.00 3.02
2338 9576 6.398095 TGGTGATGATAATATGCGGTTCTAG 58.602 40.000 0.00 0.00 0.00 2.43
2339 9577 6.353404 TGGTGATGATAATATGCGGTTCTA 57.647 37.500 0.00 0.00 0.00 2.10
2340 9578 5.227569 TGGTGATGATAATATGCGGTTCT 57.772 39.130 0.00 0.00 0.00 3.01
2341 9579 5.163723 CCATGGTGATGATAATATGCGGTTC 60.164 44.000 2.57 0.00 0.00 3.62
2342 9580 4.701651 CCATGGTGATGATAATATGCGGTT 59.298 41.667 2.57 0.00 0.00 4.44
2343 9581 4.264253 CCATGGTGATGATAATATGCGGT 58.736 43.478 2.57 0.00 0.00 5.68
2344 9582 3.065786 GCCATGGTGATGATAATATGCGG 59.934 47.826 14.67 0.00 0.00 5.69
2345 9583 3.943381 AGCCATGGTGATGATAATATGCG 59.057 43.478 14.67 0.00 0.00 4.73
2346 9584 5.651139 AGAAGCCATGGTGATGATAATATGC 59.349 40.000 14.67 0.00 0.00 3.14
2347 9585 7.392393 TGAAGAAGCCATGGTGATGATAATATG 59.608 37.037 14.67 0.00 0.00 1.78
2348 9586 7.464273 TGAAGAAGCCATGGTGATGATAATAT 58.536 34.615 14.67 0.00 0.00 1.28
2349 9587 6.840527 TGAAGAAGCCATGGTGATGATAATA 58.159 36.000 14.67 0.00 0.00 0.98
2350 9588 5.698104 TGAAGAAGCCATGGTGATGATAAT 58.302 37.500 14.67 0.00 0.00 1.28
2351 9589 5.114764 TGAAGAAGCCATGGTGATGATAA 57.885 39.130 14.67 0.00 0.00 1.75
2352 9590 4.711399 CTGAAGAAGCCATGGTGATGATA 58.289 43.478 14.67 0.00 0.00 2.15
2353 9591 3.552875 CTGAAGAAGCCATGGTGATGAT 58.447 45.455 14.67 0.00 0.00 2.45
2354 9592 2.995283 CTGAAGAAGCCATGGTGATGA 58.005 47.619 14.67 0.00 0.00 2.92
2366 9604 1.373497 ACGACGCCTGCTGAAGAAG 60.373 57.895 0.00 0.00 0.00 2.85
2367 9605 1.664649 CACGACGCCTGCTGAAGAA 60.665 57.895 0.00 0.00 0.00 2.52
2368 9606 1.520600 TACACGACGCCTGCTGAAGA 61.521 55.000 0.00 0.00 0.00 2.87
2369 9607 0.666274 TTACACGACGCCTGCTGAAG 60.666 55.000 0.00 0.00 0.00 3.02
2370 9608 0.942410 GTTACACGACGCCTGCTGAA 60.942 55.000 0.00 0.00 0.00 3.02
2371 9609 1.372499 GTTACACGACGCCTGCTGA 60.372 57.895 0.00 0.00 0.00 4.26
2372 9610 2.716828 CGTTACACGACGCCTGCTG 61.717 63.158 0.00 0.00 46.05 4.41
2373 9611 2.430244 CGTTACACGACGCCTGCT 60.430 61.111 0.00 0.00 46.05 4.24
2381 9619 1.138036 CATCGAGGGCGTTACACGA 59.862 57.895 0.00 0.00 46.05 4.35
2436 9674 1.818060 TGCTTTCAATGCGGTTATGCT 59.182 42.857 0.00 0.00 35.36 3.79
2533 9771 8.669946 TTTAGTCATGTAATTGTGTGAAGTGA 57.330 30.769 0.00 0.00 0.00 3.41
2814 10052 5.907207 AGCTTAAATAGTCTTGATCTCGCA 58.093 37.500 0.00 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.