Multiple sequence alignment - TraesCS3A01G306700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G306700 chr3A 100.000 8268 0 0 1 8268 544389467 544397734 0.000000e+00 15269.0
1 TraesCS3A01G306700 chr3A 94.444 306 7 2 1385 1690 544390710 544391005 5.850000e-126 462.0
2 TraesCS3A01G306700 chr3A 94.444 306 7 2 1244 1539 544390851 544391156 5.850000e-126 462.0
3 TraesCS3A01G306700 chr3A 90.323 155 5 2 1536 1690 544390710 544390854 2.350000e-45 195.0
4 TraesCS3A01G306700 chr3A 90.323 155 5 2 1244 1388 544391002 544391156 2.350000e-45 195.0
5 TraesCS3A01G306700 chr3A 92.366 131 9 1 5944 6073 12239862 12239992 1.420000e-42 185.0
6 TraesCS3A01G306700 chr3A 80.808 99 13 5 7515 7610 686239560 686239465 1.150000e-08 73.1
7 TraesCS3A01G306700 chr3B 96.513 4416 118 20 1540 5946 532936056 532931668 0.000000e+00 7269.0
8 TraesCS3A01G306700 chr3B 96.318 1385 47 4 6060 7441 532931670 532930287 0.000000e+00 2272.0
9 TraesCS3A01G306700 chr3B 91.696 1409 72 18 1 1388 532937290 532935906 0.000000e+00 1912.0
10 TraesCS3A01G306700 chr3B 84.354 441 32 15 7836 8268 532927753 532927342 1.670000e-106 398.0
11 TraesCS3A01G306700 chr3B 94.040 151 9 0 1389 1539 532936056 532935906 6.450000e-56 230.0
12 TraesCS3A01G306700 chr3B 94.958 119 6 0 5944 6062 658489667 658489549 3.940000e-43 187.0
13 TraesCS3A01G306700 chr3D 98.210 3016 49 4 1764 4776 407236223 407233210 0.000000e+00 5265.0
14 TraesCS3A01G306700 chr3D 94.134 2199 81 19 6093 8268 407231768 407229595 0.000000e+00 3302.0
15 TraesCS3A01G306700 chr3D 92.972 1551 77 15 1 1539 407237779 407236249 0.000000e+00 2231.0
16 TraesCS3A01G306700 chr3D 98.805 1172 14 0 4775 5946 407232951 407231780 0.000000e+00 2087.0
17 TraesCS3A01G306700 chr3D 92.000 350 13 6 1389 1738 407236541 407236207 2.090000e-130 477.0
18 TraesCS3A01G306700 chr3D 90.323 155 5 2 1244 1388 407236403 407236249 2.350000e-45 195.0
19 TraesCS3A01G306700 chr3D 90.066 151 6 2 1540 1690 407236541 407236400 3.940000e-43 187.0
20 TraesCS3A01G306700 chr7B 86.404 228 31 0 3426 3653 443295470 443295243 4.950000e-62 250.0
21 TraesCS3A01G306700 chr7B 95.763 118 5 0 5941 6058 589467039 589467156 3.050000e-44 191.0
22 TraesCS3A01G306700 chr7D 85.526 228 33 0 3426 3653 425505919 425505692 1.070000e-58 239.0
23 TraesCS3A01G306700 chr7A 85.217 230 34 0 3424 3653 507760168 507760397 3.860000e-58 237.0
24 TraesCS3A01G306700 chr5A 83.700 227 37 0 3427 3653 381369505 381369279 1.810000e-51 215.0
25 TraesCS3A01G306700 chr5D 93.939 132 6 2 5944 6074 461071643 461071773 1.820000e-46 198.0
26 TraesCS3A01G306700 chr5D 93.130 131 9 0 5944 6074 547541723 547541853 8.470000e-45 193.0
27 TraesCS3A01G306700 chr4D 95.122 123 4 2 5943 6064 55352559 55352438 8.470000e-45 193.0
28 TraesCS3A01G306700 chr2A 94.309 123 5 2 5944 6065 729162003 729162124 3.940000e-43 187.0
29 TraesCS3A01G306700 chr1A 93.548 124 8 0 5938 6061 498452791 498452668 1.420000e-42 185.0
30 TraesCS3A01G306700 chr6B 90.580 138 10 2 5935 6069 21137129 21137266 6.590000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G306700 chr3A 544389467 544397734 8267 False 15269.000000 15269 100.000000 1 8268 1 chr3A.!!$F2 8267
1 TraesCS3A01G306700 chr3B 532927342 532937290 9948 True 2416.200000 7269 92.584200 1 8268 5 chr3B.!!$R2 8267
2 TraesCS3A01G306700 chr3D 407229595 407237779 8184 True 1963.428571 5265 93.787143 1 8268 7 chr3D.!!$R1 8267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 843 0.451783 CCTTTCTTGAAATCGGCCGG 59.548 55.000 27.83 7.21 0.00 6.13 F
1590 1610 0.110419 GCATTGTACAGTTTGCGCGA 60.110 50.000 12.10 0.00 0.00 5.87 F
2021 2043 1.453155 ATTTGGATCTGTCGTGTGCC 58.547 50.000 0.00 0.00 0.00 5.01 F
3020 3043 1.606224 CCAAAAACATGGCAGGTCAGC 60.606 52.381 4.81 0.00 32.78 4.26 F
3739 3763 1.075601 TGGCAGGGAATCCAAGAGTT 58.924 50.000 0.09 0.00 34.83 3.01 F
4394 4421 1.475280 GTGGAACTTATTTTCGGGCCC 59.525 52.381 13.57 13.57 0.00 5.80 F
5963 6254 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2125 2148 0.246635 TACTGCCTCCGTGCTCTTTC 59.753 55.000 0.00 0.00 0.00 2.62 R
3094 3117 1.133513 TGGTGGAAGGTTGCAGTGAAT 60.134 47.619 0.00 0.00 0.00 2.57 R
3739 3763 0.544357 CCCTGGTGACCTCTGGTGTA 60.544 60.000 2.11 0.00 35.25 2.90 R
4387 4414 1.796017 TATTCATGTAGTGGGCCCGA 58.204 50.000 19.37 2.67 0.00 5.14 R
5566 5853 1.150135 TCTTCCAACAGTCCCTCCTCT 59.850 52.381 0.00 0.00 0.00 3.69 R
6035 6326 0.110192 CTCCGTCCGAAAAAGCTTGC 60.110 55.000 0.00 0.00 0.00 4.01 R
7768 8103 1.132453 GAAGCGCCTAACACCAAATCC 59.868 52.381 2.29 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.160626 ACGCTATAGCTCCTCTTTTGAGTT 59.839 41.667 21.98 0.00 40.95 3.01
44 50 9.655769 CTTTTGAGTTGTGATTCGGAATATATG 57.344 33.333 2.65 0.00 0.00 1.78
47 53 7.679783 TGAGTTGTGATTCGGAATATATGGAT 58.320 34.615 2.65 0.00 0.00 3.41
59 65 8.204160 TCGGAATATATGGATTATTCTCGCATT 58.796 33.333 0.00 0.00 32.46 3.56
60 66 9.476202 CGGAATATATGGATTATTCTCGCATTA 57.524 33.333 0.00 0.00 32.46 1.90
64 70 9.950496 ATATATGGATTATTCTCGCATTATCCC 57.050 33.333 0.00 0.00 33.18 3.85
65 71 4.843728 TGGATTATTCTCGCATTATCCCC 58.156 43.478 0.00 0.00 33.18 4.81
66 72 4.536090 TGGATTATTCTCGCATTATCCCCT 59.464 41.667 0.00 0.00 33.18 4.79
67 73 5.119694 GGATTATTCTCGCATTATCCCCTC 58.880 45.833 0.00 0.00 29.42 4.30
68 74 5.104735 GGATTATTCTCGCATTATCCCCTCT 60.105 44.000 0.00 0.00 29.42 3.69
70 76 3.475566 TTCTCGCATTATCCCCTCTTG 57.524 47.619 0.00 0.00 0.00 3.02
71 77 2.398588 TCTCGCATTATCCCCTCTTGT 58.601 47.619 0.00 0.00 0.00 3.16
72 78 2.103094 TCTCGCATTATCCCCTCTTGTG 59.897 50.000 0.00 0.00 0.00 3.33
91 97 2.685897 GTGTATATTTGGCGGCAGGAAA 59.314 45.455 12.87 4.10 0.00 3.13
105 111 2.096013 GCAGGAAATTAAGCGGACACTC 59.904 50.000 0.00 0.00 0.00 3.51
106 112 3.334691 CAGGAAATTAAGCGGACACTCA 58.665 45.455 0.00 0.00 0.00 3.41
133 139 2.898705 CTGGTATCTTGTCCAGTGAGC 58.101 52.381 0.00 0.00 44.19 4.26
155 161 1.122019 AACTCCTTGTGTCCGAGCCT 61.122 55.000 0.00 0.00 0.00 4.58
156 162 1.079543 CTCCTTGTGTCCGAGCCTG 60.080 63.158 0.00 0.00 0.00 4.85
157 163 2.743928 CCTTGTGTCCGAGCCTGC 60.744 66.667 0.00 0.00 0.00 4.85
158 164 2.743928 CTTGTGTCCGAGCCTGCC 60.744 66.667 0.00 0.00 0.00 4.85
159 165 3.535629 CTTGTGTCCGAGCCTGCCA 62.536 63.158 0.00 0.00 0.00 4.92
160 166 2.809861 CTTGTGTCCGAGCCTGCCAT 62.810 60.000 0.00 0.00 0.00 4.40
161 167 1.549243 TTGTGTCCGAGCCTGCCATA 61.549 55.000 0.00 0.00 0.00 2.74
162 168 1.521681 GTGTCCGAGCCTGCCATAC 60.522 63.158 0.00 0.00 0.00 2.39
163 169 2.109181 GTCCGAGCCTGCCATACC 59.891 66.667 0.00 0.00 0.00 2.73
164 170 3.161450 TCCGAGCCTGCCATACCC 61.161 66.667 0.00 0.00 0.00 3.69
165 171 3.479203 CCGAGCCTGCCATACCCA 61.479 66.667 0.00 0.00 0.00 4.51
166 172 2.822637 CCGAGCCTGCCATACCCAT 61.823 63.158 0.00 0.00 0.00 4.00
167 173 1.302033 CGAGCCTGCCATACCCATC 60.302 63.158 0.00 0.00 0.00 3.51
179 185 2.512910 TACCCATCCATCCATCCAGT 57.487 50.000 0.00 0.00 0.00 4.00
180 186 2.512910 ACCCATCCATCCATCCAGTA 57.487 50.000 0.00 0.00 0.00 2.74
220 227 4.668289 CCACCGTAATCATTTTTACAGGC 58.332 43.478 0.00 0.00 33.19 4.85
248 255 2.044946 GCCGCCACCTTCTCCAAT 60.045 61.111 0.00 0.00 0.00 3.16
251 258 1.299648 CGCCACCTTCTCCAATCCA 59.700 57.895 0.00 0.00 0.00 3.41
254 261 1.546029 GCCACCTTCTCCAATCCAAAC 59.454 52.381 0.00 0.00 0.00 2.93
301 314 1.141053 ACCCTCATTAATCTCCCACGC 59.859 52.381 0.00 0.00 0.00 5.34
315 331 0.517316 CCACGCTTTGCACTCTAACC 59.483 55.000 0.00 0.00 0.00 2.85
321 337 2.030805 GCTTTGCACTCTAACCAAGTGG 60.031 50.000 5.51 0.00 43.50 4.00
418 434 3.775654 GAGGCAGGAGGGGTCGTG 61.776 72.222 0.00 0.00 0.00 4.35
492 508 2.286872 TCTCCGTCCGAGTCTATCAAC 58.713 52.381 0.00 0.00 39.84 3.18
535 551 3.369157 GGCCTACTATAAATAGCCACCCG 60.369 52.174 0.00 0.00 33.68 5.28
568 586 2.347490 GCCTCGCCTCAAGAACCA 59.653 61.111 0.00 0.00 0.00 3.67
590 608 5.649395 CCACCTTCTCATCAAGAATTAAGCA 59.351 40.000 0.00 0.00 43.06 3.91
623 642 5.120830 CGTCAGGTTGATCAGAAAAAGGTAG 59.879 44.000 0.00 0.00 0.00 3.18
624 643 5.998363 GTCAGGTTGATCAGAAAAAGGTAGT 59.002 40.000 0.00 0.00 0.00 2.73
625 644 7.159372 GTCAGGTTGATCAGAAAAAGGTAGTA 58.841 38.462 0.00 0.00 0.00 1.82
637 656 2.779033 GGTAGTACACGGGAGGCGG 61.779 68.421 2.06 0.00 0.00 6.13
649 668 1.450491 GAGGCGGCTTTCCTCTTCC 60.450 63.158 14.76 0.00 45.13 3.46
652 671 2.272471 CGGCTTTCCTCTTCCCCC 59.728 66.667 0.00 0.00 0.00 5.40
738 757 1.353103 GATTGTGCGGCCAATCTCG 59.647 57.895 24.48 0.00 44.68 4.04
748 767 3.546271 GCGGCCAATCTCGTTTATTTTTC 59.454 43.478 2.24 0.00 0.00 2.29
750 769 5.399013 CGGCCAATCTCGTTTATTTTTCTT 58.601 37.500 2.24 0.00 0.00 2.52
824 843 0.451783 CCTTTCTTGAAATCGGCCGG 59.548 55.000 27.83 7.21 0.00 6.13
825 844 1.448985 CTTTCTTGAAATCGGCCGGA 58.551 50.000 27.83 12.89 0.00 5.14
930 949 2.962421 TGATGGTTTCTGGGGTTTGTTC 59.038 45.455 0.00 0.00 0.00 3.18
932 951 1.064611 TGGTTTCTGGGGTTTGTTCGA 60.065 47.619 0.00 0.00 0.00 3.71
1077 1096 1.448717 GCCCAAGAAGCTCTCGGAC 60.449 63.158 0.00 0.00 0.00 4.79
1162 1181 0.621571 CCAGGGGGACAAGATCAGGA 60.622 60.000 0.00 0.00 35.59 3.86
1214 1234 4.943705 TCCATGTTATCCTGCACTTTCTTC 59.056 41.667 0.00 0.00 0.00 2.87
1244 1264 4.766891 ACCTGTTGATTGATTTAGGTGGTG 59.233 41.667 0.00 0.00 37.17 4.17
1250 1270 7.871973 TGTTGATTGATTTAGGTGGTGATTTTG 59.128 33.333 0.00 0.00 0.00 2.44
1285 1305 1.420378 TTCATTTGTGCTGCATTGCG 58.580 45.000 5.27 0.24 35.36 4.85
1325 1345 7.765307 AGATAGACATGTTATTTTTGCCAGTG 58.235 34.615 0.00 0.00 0.00 3.66
1330 1350 3.300388 TGTTATTTTTGCCAGTGTGGGA 58.700 40.909 0.00 0.00 38.19 4.37
1473 1493 7.041780 AGCTAGATAGACATGTTATTTTTGCCG 60.042 37.037 0.00 0.00 0.00 5.69
1474 1494 6.377327 AGATAGACATGTTATTTTTGCCGG 57.623 37.500 0.00 0.00 0.00 6.13
1475 1495 5.885912 AGATAGACATGTTATTTTTGCCGGT 59.114 36.000 1.90 0.00 0.00 5.28
1476 1496 4.173036 AGACATGTTATTTTTGCCGGTG 57.827 40.909 1.90 0.00 0.00 4.94
1477 1497 3.572255 AGACATGTTATTTTTGCCGGTGT 59.428 39.130 1.90 0.00 0.00 4.16
1478 1498 3.648009 ACATGTTATTTTTGCCGGTGTG 58.352 40.909 1.90 0.00 0.00 3.82
1479 1499 2.802787 TGTTATTTTTGCCGGTGTGG 57.197 45.000 1.90 0.00 42.50 4.17
1480 1500 1.341531 TGTTATTTTTGCCGGTGTGGG 59.658 47.619 1.90 0.00 38.63 4.61
1481 1501 1.614413 GTTATTTTTGCCGGTGTGGGA 59.386 47.619 1.90 0.00 38.63 4.37
1482 1502 2.223803 TATTTTTGCCGGTGTGGGAT 57.776 45.000 1.90 0.00 38.21 3.85
1483 1503 1.347062 ATTTTTGCCGGTGTGGGATT 58.653 45.000 1.90 0.00 38.21 3.01
1484 1504 0.676736 TTTTTGCCGGTGTGGGATTC 59.323 50.000 1.90 0.00 38.21 2.52
1485 1505 0.468214 TTTTGCCGGTGTGGGATTCA 60.468 50.000 1.90 0.00 38.21 2.57
1486 1506 1.175983 TTTGCCGGTGTGGGATTCAC 61.176 55.000 1.90 0.00 46.23 3.18
1487 1507 2.063015 TTGCCGGTGTGGGATTCACT 62.063 55.000 1.90 0.00 46.20 3.41
1488 1508 2.040544 GCCGGTGTGGGATTCACTG 61.041 63.158 1.90 0.00 46.20 3.66
1489 1509 1.374947 CCGGTGTGGGATTCACTGT 59.625 57.895 0.00 0.00 46.20 3.55
1490 1510 0.250727 CCGGTGTGGGATTCACTGTT 60.251 55.000 0.00 0.00 46.20 3.16
1491 1511 1.156736 CGGTGTGGGATTCACTGTTC 58.843 55.000 0.00 0.00 46.20 3.18
1492 1512 1.534729 GGTGTGGGATTCACTGTTCC 58.465 55.000 0.00 0.00 46.20 3.62
1493 1513 1.073923 GGTGTGGGATTCACTGTTCCT 59.926 52.381 0.00 0.00 46.20 3.36
1494 1514 2.154462 GTGTGGGATTCACTGTTCCTG 58.846 52.381 0.00 0.00 46.20 3.86
1495 1515 1.774254 TGTGGGATTCACTGTTCCTGT 59.226 47.619 0.00 0.00 46.20 4.00
1496 1516 2.174639 TGTGGGATTCACTGTTCCTGTT 59.825 45.455 0.00 0.00 46.20 3.16
1497 1517 2.814336 GTGGGATTCACTGTTCCTGTTC 59.186 50.000 0.00 0.00 42.86 3.18
1498 1518 2.711009 TGGGATTCACTGTTCCTGTTCT 59.289 45.455 0.00 0.00 32.34 3.01
1499 1519 3.138283 TGGGATTCACTGTTCCTGTTCTT 59.862 43.478 0.00 0.00 32.34 2.52
1500 1520 3.753797 GGGATTCACTGTTCCTGTTCTTC 59.246 47.826 0.00 0.00 32.34 2.87
1501 1521 4.389374 GGATTCACTGTTCCTGTTCTTCA 58.611 43.478 0.00 0.00 0.00 3.02
1502 1522 4.821805 GGATTCACTGTTCCTGTTCTTCAA 59.178 41.667 0.00 0.00 0.00 2.69
1503 1523 5.049129 GGATTCACTGTTCCTGTTCTTCAAG 60.049 44.000 0.00 0.00 0.00 3.02
1504 1524 3.808728 TCACTGTTCCTGTTCTTCAAGG 58.191 45.455 0.00 0.00 0.00 3.61
1505 1525 3.199946 TCACTGTTCCTGTTCTTCAAGGT 59.800 43.478 0.00 0.00 0.00 3.50
1506 1526 3.947834 CACTGTTCCTGTTCTTCAAGGTT 59.052 43.478 0.00 0.00 0.00 3.50
1507 1527 4.399303 CACTGTTCCTGTTCTTCAAGGTTT 59.601 41.667 0.00 0.00 0.00 3.27
1508 1528 4.399303 ACTGTTCCTGTTCTTCAAGGTTTG 59.601 41.667 0.00 0.00 0.00 2.93
1509 1529 4.340617 TGTTCCTGTTCTTCAAGGTTTGT 58.659 39.130 0.00 0.00 0.00 2.83
1510 1530 4.157656 TGTTCCTGTTCTTCAAGGTTTGTG 59.842 41.667 0.00 0.00 0.00 3.33
1511 1531 2.687935 TCCTGTTCTTCAAGGTTTGTGC 59.312 45.455 0.00 0.00 0.00 4.57
1512 1532 2.689983 CCTGTTCTTCAAGGTTTGTGCT 59.310 45.455 0.00 0.00 0.00 4.40
1513 1533 3.243201 CCTGTTCTTCAAGGTTTGTGCTC 60.243 47.826 0.00 0.00 0.00 4.26
1514 1534 3.620488 TGTTCTTCAAGGTTTGTGCTCT 58.380 40.909 0.00 0.00 0.00 4.09
1515 1535 4.776349 TGTTCTTCAAGGTTTGTGCTCTA 58.224 39.130 0.00 0.00 0.00 2.43
1516 1536 5.189928 TGTTCTTCAAGGTTTGTGCTCTAA 58.810 37.500 0.00 0.00 0.00 2.10
1517 1537 5.650266 TGTTCTTCAAGGTTTGTGCTCTAAA 59.350 36.000 0.00 0.00 0.00 1.85
1518 1538 6.183360 TGTTCTTCAAGGTTTGTGCTCTAAAG 60.183 38.462 0.00 0.00 0.00 1.85
1519 1539 4.821805 TCTTCAAGGTTTGTGCTCTAAAGG 59.178 41.667 0.00 0.00 0.00 3.11
1520 1540 4.164843 TCAAGGTTTGTGCTCTAAAGGT 57.835 40.909 0.00 0.00 0.00 3.50
1521 1541 3.882888 TCAAGGTTTGTGCTCTAAAGGTG 59.117 43.478 0.00 0.00 0.00 4.00
1522 1542 2.863809 AGGTTTGTGCTCTAAAGGTGG 58.136 47.619 0.00 0.00 0.00 4.61
1523 1543 1.269723 GGTTTGTGCTCTAAAGGTGGC 59.730 52.381 0.00 0.00 0.00 5.01
1524 1544 1.953686 GTTTGTGCTCTAAAGGTGGCA 59.046 47.619 0.00 0.00 0.00 4.92
1525 1545 2.356665 TTGTGCTCTAAAGGTGGCAA 57.643 45.000 0.00 0.00 36.43 4.52
1526 1546 2.584835 TGTGCTCTAAAGGTGGCAAT 57.415 45.000 0.00 0.00 36.43 3.56
1527 1547 2.161855 TGTGCTCTAAAGGTGGCAATG 58.838 47.619 0.00 0.00 36.43 2.82
1528 1548 2.162681 GTGCTCTAAAGGTGGCAATGT 58.837 47.619 0.00 0.00 36.43 2.71
1529 1549 2.558359 GTGCTCTAAAGGTGGCAATGTT 59.442 45.455 0.00 0.00 36.43 2.71
1530 1550 2.557924 TGCTCTAAAGGTGGCAATGTTG 59.442 45.455 0.00 0.00 0.00 3.33
1547 1567 7.769719 CAATGTTGCACTTGATTTTTAATGC 57.230 32.000 0.00 0.00 0.00 3.56
1548 1568 5.921004 TGTTGCACTTGATTTTTAATGCC 57.079 34.783 0.00 0.00 32.02 4.40
1549 1569 5.363101 TGTTGCACTTGATTTTTAATGCCA 58.637 33.333 0.00 0.00 32.02 4.92
1550 1570 5.996513 TGTTGCACTTGATTTTTAATGCCAT 59.003 32.000 0.00 0.00 32.02 4.40
1551 1571 6.073167 TGTTGCACTTGATTTTTAATGCCATG 60.073 34.615 0.00 0.00 32.02 3.66
1552 1572 5.791666 TGCACTTGATTTTTAATGCCATGA 58.208 33.333 0.00 0.00 32.02 3.07
1553 1573 5.638657 TGCACTTGATTTTTAATGCCATGAC 59.361 36.000 0.00 0.00 32.02 3.06
1554 1574 5.063817 GCACTTGATTTTTAATGCCATGACC 59.936 40.000 0.00 0.00 0.00 4.02
1555 1575 6.400568 CACTTGATTTTTAATGCCATGACCT 58.599 36.000 0.00 0.00 0.00 3.85
1556 1576 6.311935 CACTTGATTTTTAATGCCATGACCTG 59.688 38.462 0.00 0.00 0.00 4.00
1557 1577 5.999205 TGATTTTTAATGCCATGACCTGT 57.001 34.783 0.00 0.00 0.00 4.00
1558 1578 6.357579 TGATTTTTAATGCCATGACCTGTT 57.642 33.333 0.00 0.00 0.00 3.16
1559 1579 6.767456 TGATTTTTAATGCCATGACCTGTTT 58.233 32.000 0.00 0.00 0.00 2.83
1560 1580 7.222872 TGATTTTTAATGCCATGACCTGTTTT 58.777 30.769 0.00 0.00 0.00 2.43
1561 1581 7.387397 TGATTTTTAATGCCATGACCTGTTTTC 59.613 33.333 0.00 0.00 0.00 2.29
1562 1582 5.798125 TTTAATGCCATGACCTGTTTTCA 57.202 34.783 0.00 0.00 0.00 2.69
1563 1583 5.999205 TTAATGCCATGACCTGTTTTCAT 57.001 34.783 0.00 0.00 33.81 2.57
1564 1584 4.895668 AATGCCATGACCTGTTTTCATT 57.104 36.364 0.00 0.00 30.98 2.57
1565 1585 4.895668 ATGCCATGACCTGTTTTCATTT 57.104 36.364 0.00 0.00 30.98 2.32
1566 1586 3.992643 TGCCATGACCTGTTTTCATTTG 58.007 40.909 0.00 0.00 30.98 2.32
1567 1587 3.387374 TGCCATGACCTGTTTTCATTTGT 59.613 39.130 0.00 0.00 30.98 2.83
1568 1588 3.742369 GCCATGACCTGTTTTCATTTGTG 59.258 43.478 0.00 0.00 30.98 3.33
1569 1589 3.742369 CCATGACCTGTTTTCATTTGTGC 59.258 43.478 0.00 0.00 30.98 4.57
1570 1590 4.501915 CCATGACCTGTTTTCATTTGTGCT 60.502 41.667 0.00 0.00 30.98 4.40
1571 1591 4.044336 TGACCTGTTTTCATTTGTGCTG 57.956 40.909 0.00 0.00 0.00 4.41
1572 1592 2.796593 GACCTGTTTTCATTTGTGCTGC 59.203 45.455 0.00 0.00 0.00 5.25
1573 1593 2.168106 ACCTGTTTTCATTTGTGCTGCA 59.832 40.909 0.00 0.00 0.00 4.41
1574 1594 3.181463 ACCTGTTTTCATTTGTGCTGCAT 60.181 39.130 5.27 0.00 0.00 3.96
1575 1595 3.810941 CCTGTTTTCATTTGTGCTGCATT 59.189 39.130 5.27 0.00 0.00 3.56
1576 1596 4.319190 CCTGTTTTCATTTGTGCTGCATTG 60.319 41.667 5.27 2.14 0.00 2.82
1577 1597 4.190001 TGTTTTCATTTGTGCTGCATTGT 58.810 34.783 5.27 0.00 0.00 2.71
1578 1598 5.354767 TGTTTTCATTTGTGCTGCATTGTA 58.645 33.333 5.27 0.00 0.00 2.41
1579 1599 5.233902 TGTTTTCATTTGTGCTGCATTGTAC 59.766 36.000 5.27 0.00 0.00 2.90
1580 1600 4.581077 TTCATTTGTGCTGCATTGTACA 57.419 36.364 5.27 0.00 0.00 2.90
1581 1601 4.163458 TCATTTGTGCTGCATTGTACAG 57.837 40.909 5.27 0.00 34.34 2.74
1582 1602 3.569277 TCATTTGTGCTGCATTGTACAGT 59.431 39.130 5.27 0.00 37.47 3.55
1583 1603 4.037803 TCATTTGTGCTGCATTGTACAGTT 59.962 37.500 5.27 0.00 37.47 3.16
1584 1604 4.383850 TTTGTGCTGCATTGTACAGTTT 57.616 36.364 5.27 0.00 37.47 2.66
1585 1605 3.352554 TGTGCTGCATTGTACAGTTTG 57.647 42.857 5.27 0.00 37.47 2.93
1586 1606 2.053627 GTGCTGCATTGTACAGTTTGC 58.946 47.619 5.27 16.30 37.47 3.68
1587 1607 1.330306 GCTGCATTGTACAGTTTGCG 58.670 50.000 17.35 14.09 37.92 4.85
1588 1608 1.330306 CTGCATTGTACAGTTTGCGC 58.670 50.000 17.35 0.00 37.92 6.09
1589 1609 0.385348 TGCATTGTACAGTTTGCGCG 60.385 50.000 17.35 0.00 37.92 6.86
1590 1610 0.110419 GCATTGTACAGTTTGCGCGA 60.110 50.000 12.10 0.00 0.00 5.87
1591 1611 1.465689 GCATTGTACAGTTTGCGCGAT 60.466 47.619 12.10 0.00 0.00 4.58
1592 1612 2.850321 CATTGTACAGTTTGCGCGATT 58.150 42.857 12.10 0.00 0.00 3.34
1593 1613 3.726486 GCATTGTACAGTTTGCGCGATTA 60.726 43.478 12.10 0.00 0.00 1.75
1594 1614 4.399112 CATTGTACAGTTTGCGCGATTAA 58.601 39.130 12.10 0.00 0.00 1.40
1595 1615 4.671880 TTGTACAGTTTGCGCGATTAAT 57.328 36.364 12.10 0.00 0.00 1.40
1596 1616 4.253352 TGTACAGTTTGCGCGATTAATC 57.747 40.909 12.10 5.30 0.00 1.75
1597 1617 3.930229 TGTACAGTTTGCGCGATTAATCT 59.070 39.130 12.10 3.09 0.00 2.40
1598 1618 5.103687 TGTACAGTTTGCGCGATTAATCTA 58.896 37.500 12.10 0.00 0.00 1.98
1599 1619 4.778842 ACAGTTTGCGCGATTAATCTAG 57.221 40.909 12.10 8.03 0.00 2.43
1600 1620 3.001330 ACAGTTTGCGCGATTAATCTAGC 59.999 43.478 12.10 18.99 0.00 3.42
1601 1621 3.246226 CAGTTTGCGCGATTAATCTAGCT 59.754 43.478 23.27 0.00 0.00 3.32
1602 1622 4.444388 CAGTTTGCGCGATTAATCTAGCTA 59.556 41.667 23.27 17.11 0.00 3.32
1603 1623 4.681942 AGTTTGCGCGATTAATCTAGCTAG 59.318 41.667 23.27 15.01 0.00 3.42
1604 1624 4.499037 TTGCGCGATTAATCTAGCTAGA 57.501 40.909 25.23 25.23 36.65 2.43
1605 1625 4.703645 TGCGCGATTAATCTAGCTAGAT 57.296 40.909 27.31 27.31 44.54 1.98
1606 1626 5.813080 TGCGCGATTAATCTAGCTAGATA 57.187 39.130 31.58 20.07 41.96 1.98
1607 1627 5.811588 TGCGCGATTAATCTAGCTAGATAG 58.188 41.667 31.58 21.28 41.96 2.08
1608 1628 5.585047 TGCGCGATTAATCTAGCTAGATAGA 59.415 40.000 31.58 23.49 41.96 1.98
1609 1629 5.905181 GCGCGATTAATCTAGCTAGATAGAC 59.095 44.000 31.58 21.63 41.96 2.59
1610 1630 6.457122 GCGCGATTAATCTAGCTAGATAGACA 60.457 42.308 31.58 18.04 41.96 3.41
1611 1631 7.635423 CGCGATTAATCTAGCTAGATAGACAT 58.365 38.462 31.58 21.16 41.96 3.06
1612 1632 7.585936 CGCGATTAATCTAGCTAGATAGACATG 59.414 40.741 31.58 21.15 41.96 3.21
1613 1633 8.402472 GCGATTAATCTAGCTAGATAGACATGT 58.598 37.037 31.58 18.76 41.96 3.21
1729 1749 9.317827 AGTAATTAAGTCCTTTGACAGTAGGTA 57.682 33.333 5.80 0.00 44.33 3.08
1760 1781 7.715686 CCTGAGGTTCTACCATTTAGTTATTCC 59.284 40.741 0.00 0.00 41.95 3.01
2006 2028 9.221775 GACCGCTAATGTACAGAAAATTATTTG 57.778 33.333 0.33 0.00 0.00 2.32
2021 2043 1.453155 ATTTGGATCTGTCGTGTGCC 58.547 50.000 0.00 0.00 0.00 5.01
2125 2148 1.806542 CCATCTCCAAAACGACACCTG 59.193 52.381 0.00 0.00 0.00 4.00
2240 2263 9.624697 CAAAGTTCTGCTTGCAGTATTTTAATA 57.375 29.630 20.20 0.00 37.52 0.98
2383 2406 7.678947 ACCTATGTGATATCATGCTAAAAGC 57.321 36.000 9.02 0.00 42.82 3.51
2397 2420 7.282901 TCATGCTAAAAGCTTGATGCATAACTA 59.717 33.333 23.53 12.65 46.28 2.24
3020 3043 1.606224 CCAAAAACATGGCAGGTCAGC 60.606 52.381 4.81 0.00 32.78 4.26
3094 3117 3.088532 ACTTTGAAGTGTTGCTTGTGGA 58.911 40.909 0.00 0.00 37.98 4.02
3109 3132 2.229792 TGTGGATTCACTGCAACCTTC 58.770 47.619 5.55 0.00 43.94 3.46
3363 3386 8.220755 ACTCTATTCACTGATCAGTTAGACTC 57.779 38.462 25.84 0.00 40.20 3.36
3657 3680 3.069016 GGTGGTGATCGTGATGGTATACA 59.931 47.826 5.01 0.00 0.00 2.29
3739 3763 1.075601 TGGCAGGGAATCCAAGAGTT 58.924 50.000 0.09 0.00 34.83 3.01
4003 4027 6.201425 ACACAACAAAACACTACATAGGTACG 59.799 38.462 0.00 0.00 0.00 3.67
4095 4121 2.299297 TGTTGAATGTCATGCATTGCCA 59.701 40.909 16.66 9.06 46.90 4.92
4256 4283 4.649218 ACCTTTTGCACCTTTTGTATCAGT 59.351 37.500 0.00 0.00 0.00 3.41
4394 4421 1.475280 GTGGAACTTATTTTCGGGCCC 59.525 52.381 13.57 13.57 0.00 5.80
4466 4493 6.043854 TGTTTACTTGTTTTCCTTGCCTTT 57.956 33.333 0.00 0.00 0.00 3.11
4471 4498 5.902681 ACTTGTTTTCCTTGCCTTTTCTAC 58.097 37.500 0.00 0.00 0.00 2.59
4494 4521 4.608951 GACTTCGATGAATTAGGTAGCGT 58.391 43.478 5.16 0.00 0.00 5.07
4848 5135 4.415881 ACCATAGCCGTTTCATGTATCA 57.584 40.909 0.00 0.00 0.00 2.15
5048 5335 5.426689 AGACACACTGATGTTATGGATGT 57.573 39.130 0.00 0.00 36.72 3.06
5304 5591 2.277120 CTTCTGCAGCGCGAATGC 60.277 61.111 24.55 24.55 44.11 3.56
5358 5645 7.646130 CCGTTGTTTGAAAAACTAGCAGATTTA 59.354 33.333 4.65 0.00 0.00 1.40
5566 5853 8.956426 GGATTAAGTTGACTATGTTTCATGGAA 58.044 33.333 0.00 0.00 0.00 3.53
5703 5990 2.025321 GTCCTTTGGGGAGGAGCATTTA 60.025 50.000 0.00 0.00 46.18 1.40
5847 6134 2.698855 ACCGATCCATTGTCTTCCAG 57.301 50.000 0.00 0.00 0.00 3.86
5948 6239 7.916914 TTTTGGCTAAATAGTGTTCTACTCC 57.083 36.000 0.00 0.00 40.89 3.85
5949 6240 5.609533 TGGCTAAATAGTGTTCTACTCCC 57.390 43.478 0.00 0.00 40.89 4.30
5950 6241 5.278061 TGGCTAAATAGTGTTCTACTCCCT 58.722 41.667 0.00 0.00 40.89 4.20
5951 6242 5.363005 TGGCTAAATAGTGTTCTACTCCCTC 59.637 44.000 0.00 0.00 40.89 4.30
5952 6243 5.221481 GGCTAAATAGTGTTCTACTCCCTCC 60.221 48.000 0.00 0.00 40.89 4.30
5953 6244 5.507650 GCTAAATAGTGTTCTACTCCCTCCG 60.508 48.000 0.00 0.00 40.89 4.63
5954 6245 3.666345 ATAGTGTTCTACTCCCTCCGT 57.334 47.619 0.00 0.00 40.89 4.69
5955 6246 1.836802 AGTGTTCTACTCCCTCCGTC 58.163 55.000 0.00 0.00 33.17 4.79
5956 6247 0.816373 GTGTTCTACTCCCTCCGTCC 59.184 60.000 0.00 0.00 0.00 4.79
5957 6248 0.679002 TGTTCTACTCCCTCCGTCCG 60.679 60.000 0.00 0.00 0.00 4.79
5958 6249 0.393537 GTTCTACTCCCTCCGTCCGA 60.394 60.000 0.00 0.00 0.00 4.55
5959 6250 0.329261 TTCTACTCCCTCCGTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
5960 6251 0.329261 TCTACTCCCTCCGTCCGAAA 59.671 55.000 0.00 0.00 0.00 3.46
5961 6252 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
5962 6253 1.547372 CTACTCCCTCCGTCCGAAAAA 59.453 52.381 0.00 0.00 0.00 1.94
5963 6254 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
5964 6255 0.606604 CTCCCTCCGTCCGAAAAAGA 59.393 55.000 0.00 0.00 0.00 2.52
5965 6256 1.207329 CTCCCTCCGTCCGAAAAAGAT 59.793 52.381 0.00 0.00 0.00 2.40
5966 6257 1.626825 TCCCTCCGTCCGAAAAAGATT 59.373 47.619 0.00 0.00 0.00 2.40
5967 6258 1.737793 CCCTCCGTCCGAAAAAGATTG 59.262 52.381 0.00 0.00 0.00 2.67
5968 6259 2.423577 CCTCCGTCCGAAAAAGATTGT 58.576 47.619 0.00 0.00 0.00 2.71
5969 6260 2.415512 CCTCCGTCCGAAAAAGATTGTC 59.584 50.000 0.00 0.00 0.00 3.18
5970 6261 2.415512 CTCCGTCCGAAAAAGATTGTCC 59.584 50.000 0.00 0.00 0.00 4.02
5971 6262 1.467342 CCGTCCGAAAAAGATTGTCCC 59.533 52.381 0.00 0.00 0.00 4.46
5972 6263 2.423577 CGTCCGAAAAAGATTGTCCCT 58.576 47.619 0.00 0.00 0.00 4.20
5973 6264 2.415512 CGTCCGAAAAAGATTGTCCCTC 59.584 50.000 0.00 0.00 0.00 4.30
5974 6265 3.408634 GTCCGAAAAAGATTGTCCCTCA 58.591 45.455 0.00 0.00 0.00 3.86
5975 6266 3.818773 GTCCGAAAAAGATTGTCCCTCAA 59.181 43.478 0.00 0.00 40.53 3.02
5976 6267 4.277423 GTCCGAAAAAGATTGTCCCTCAAA 59.723 41.667 0.00 0.00 39.62 2.69
5977 6268 5.048013 GTCCGAAAAAGATTGTCCCTCAAAT 60.048 40.000 0.00 0.00 39.62 2.32
5978 6269 5.048083 TCCGAAAAAGATTGTCCCTCAAATG 60.048 40.000 0.00 0.00 39.62 2.32
5979 6270 5.163513 CGAAAAAGATTGTCCCTCAAATGG 58.836 41.667 0.00 0.00 39.62 3.16
5980 6271 5.048083 CGAAAAAGATTGTCCCTCAAATGGA 60.048 40.000 0.00 0.00 39.62 3.41
5981 6272 6.350445 CGAAAAAGATTGTCCCTCAAATGGAT 60.350 38.462 0.00 0.00 39.62 3.41
5982 6273 5.927281 AAAGATTGTCCCTCAAATGGATG 57.073 39.130 0.00 0.00 39.62 3.51
5983 6274 4.598036 AGATTGTCCCTCAAATGGATGT 57.402 40.909 0.00 0.00 39.62 3.06
5984 6275 5.715439 AGATTGTCCCTCAAATGGATGTA 57.285 39.130 0.00 0.00 39.62 2.29
5985 6276 6.271585 AGATTGTCCCTCAAATGGATGTAT 57.728 37.500 0.00 0.00 39.62 2.29
5986 6277 6.302269 AGATTGTCCCTCAAATGGATGTATC 58.698 40.000 0.00 0.00 39.62 2.24
5987 6278 5.715439 TTGTCCCTCAAATGGATGTATCT 57.285 39.130 0.00 0.00 33.65 1.98
5988 6279 6.823286 TTGTCCCTCAAATGGATGTATCTA 57.177 37.500 0.00 0.00 33.65 1.98
5989 6280 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
5990 6281 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
5991 6282 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
5992 6283 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
5993 6284 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
5994 6285 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
5995 6286 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
5996 6287 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
5997 6288 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
5998 6289 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
5999 6290 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
6000 6291 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
6001 6292 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
6002 6293 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
6014 6305 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
6015 6306 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
6016 6307 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
6017 6308 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
6018 6309 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
6019 6310 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
6020 6311 7.220030 AGTTAGTGCTAGATACATCCATTTGG 58.780 38.462 0.00 0.00 0.00 3.28
6021 6312 4.978099 AGTGCTAGATACATCCATTTGGG 58.022 43.478 0.00 0.00 35.41 4.12
6031 6322 2.978156 TCCATTTGGGAGACAAGCTT 57.022 45.000 0.00 0.00 42.15 3.74
6032 6323 2.517959 TCCATTTGGGAGACAAGCTTG 58.482 47.619 24.84 24.84 42.15 4.01
6033 6324 1.547372 CCATTTGGGAGACAAGCTTGG 59.453 52.381 29.18 12.28 40.82 3.61
6034 6325 1.547372 CATTTGGGAGACAAGCTTGGG 59.453 52.381 29.18 6.83 40.82 4.12
6035 6326 0.178964 TTTGGGAGACAAGCTTGGGG 60.179 55.000 29.18 6.05 40.82 4.96
6036 6327 2.361737 GGGAGACAAGCTTGGGGC 60.362 66.667 29.18 17.79 42.19 5.80
6037 6328 2.436109 GGAGACAAGCTTGGGGCA 59.564 61.111 29.18 0.00 44.79 5.36
6038 6329 1.228552 GGAGACAAGCTTGGGGCAA 60.229 57.895 29.18 0.00 44.79 4.52
6039 6330 1.246737 GGAGACAAGCTTGGGGCAAG 61.247 60.000 29.18 3.71 43.57 4.01
6047 6338 3.199764 CTTGGGGCAAGCTTTTTCG 57.800 52.632 0.00 0.00 34.63 3.46
6048 6339 0.319813 CTTGGGGCAAGCTTTTTCGG 60.320 55.000 0.00 0.00 34.63 4.30
6049 6340 0.757188 TTGGGGCAAGCTTTTTCGGA 60.757 50.000 0.00 0.00 0.00 4.55
6050 6341 1.289066 GGGGCAAGCTTTTTCGGAC 59.711 57.895 0.00 0.00 0.00 4.79
6051 6342 1.081442 GGGCAAGCTTTTTCGGACG 60.081 57.895 0.00 0.00 0.00 4.79
6052 6343 1.081442 GGCAAGCTTTTTCGGACGG 60.081 57.895 0.00 0.00 0.00 4.79
6053 6344 1.512156 GGCAAGCTTTTTCGGACGGA 61.512 55.000 0.00 0.00 0.00 4.69
6054 6345 0.110192 GCAAGCTTTTTCGGACGGAG 60.110 55.000 0.00 0.00 0.00 4.63
6055 6346 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
6056 6347 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
6057 6348 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
6058 6349 0.604511 GCTTTTTCGGACGGAGGGAA 60.605 55.000 0.00 0.00 0.00 3.97
6059 6350 1.949079 GCTTTTTCGGACGGAGGGAAT 60.949 52.381 0.00 0.00 0.00 3.01
6060 6351 2.678769 GCTTTTTCGGACGGAGGGAATA 60.679 50.000 0.00 0.00 0.00 1.75
6061 6352 2.678471 TTTTCGGACGGAGGGAATAC 57.322 50.000 0.00 0.00 0.00 1.89
6490 6781 1.523758 GACGCAAACCAGATTCCACT 58.476 50.000 0.00 0.00 0.00 4.00
6588 6879 0.973632 AGATGTACAACGAGTGGCCA 59.026 50.000 0.00 0.00 0.00 5.36
6755 7046 4.092091 GCAACTTCTTCTACAGGTGATTCG 59.908 45.833 0.00 0.00 27.99 3.34
6849 7140 9.956720 CCAAATTTGCAAACCATACAATTTTTA 57.043 25.926 15.41 0.00 29.33 1.52
6875 7168 4.334552 TCTGATGGCAATTTAGCAACTGA 58.665 39.130 0.00 0.00 35.83 3.41
7114 7408 1.293924 CTAGCTTCCATTCACAGCCG 58.706 55.000 0.00 0.00 33.73 5.52
7147 7441 3.037549 GTCCAAGGAGATCATGGAGTCT 58.962 50.000 9.10 0.00 43.59 3.24
7195 7489 1.513586 CAACCCGACGAGCGAGTAC 60.514 63.158 0.00 0.00 44.57 2.73
7472 7795 2.827322 CCATGCTTTCCCTTTGTGATCA 59.173 45.455 0.00 0.00 0.00 2.92
7542 7865 1.213926 ACATTCATCCCCTCCAAGCTC 59.786 52.381 0.00 0.00 0.00 4.09
7561 7884 1.635663 CCGTCGGCAAATCTGTGGAC 61.636 60.000 0.00 0.00 0.00 4.02
7599 7922 4.479993 GCAGGAGCAGCCGGTGAT 62.480 66.667 1.90 0.00 43.43 3.06
7616 7939 0.476415 GATGGGGATGGGGATCCTGA 60.476 60.000 12.58 0.00 40.54 3.86
7633 7956 2.161808 CCTGATGCTTCAGCTTTGACTG 59.838 50.000 21.20 4.40 46.76 3.51
7643 7966 5.801531 TCAGCTTTGACTGGTAGTTTAGA 57.198 39.130 0.00 0.00 38.26 2.10
7668 7991 3.305131 GGGTGGTCTTTCGGTTTTTGATC 60.305 47.826 0.00 0.00 0.00 2.92
7672 7995 4.072839 GGTCTTTCGGTTTTTGATCCTCT 58.927 43.478 0.00 0.00 0.00 3.69
7734 8059 9.868277 CTAGTGTAGATTTCTGTCATCTCTTTT 57.132 33.333 0.00 0.00 32.94 2.27
7745 8080 5.305585 TGTCATCTCTTTTAGGCGACTTTT 58.694 37.500 0.00 0.00 43.67 2.27
7883 10321 5.404946 TCTAAAAATACGGTCGAAGTCCAG 58.595 41.667 0.00 0.00 34.76 3.86
7897 10335 2.896039 AGTCCAGCTTTGGAGTACTCT 58.104 47.619 21.88 0.00 39.69 3.24
7931 10371 2.741228 GCAGTTGTATCTCTGGGCTGAG 60.741 54.545 0.00 2.49 35.52 3.35
7940 10381 3.746949 CTGGGCTGAGATGGCGGTC 62.747 68.421 0.00 0.00 0.00 4.79
7994 10435 2.434359 GCCCCCAAAGTCTCGTCG 60.434 66.667 0.00 0.00 0.00 5.12
8070 10511 1.173913 GTTCCCCATGTCCTTTTCGG 58.826 55.000 0.00 0.00 0.00 4.30
8115 10562 2.571653 TGGGATCACAAGTGGAAGTAGG 59.428 50.000 0.00 0.00 0.00 3.18
8121 10568 2.298661 AAGTGGAAGTAGGGGGCGG 61.299 63.158 0.00 0.00 0.00 6.13
8123 10570 2.365105 TGGAAGTAGGGGGCGGAG 60.365 66.667 0.00 0.00 0.00 4.63
8125 10572 2.134933 GGAAGTAGGGGGCGGAGAG 61.135 68.421 0.00 0.00 0.00 3.20
8138 10585 1.073964 CGGAGAGCATGCATAATCGG 58.926 55.000 21.98 11.73 0.00 4.18
8140 10587 1.271054 GGAGAGCATGCATAATCGGGT 60.271 52.381 21.98 0.00 0.00 5.28
8141 10588 1.802960 GAGAGCATGCATAATCGGGTG 59.197 52.381 21.98 0.00 0.00 4.61
8142 10589 0.239347 GAGCATGCATAATCGGGTGC 59.761 55.000 21.98 0.00 41.61 5.01
8143 10590 0.179009 AGCATGCATAATCGGGTGCT 60.179 50.000 21.98 0.00 41.78 4.40
8144 10591 1.072173 AGCATGCATAATCGGGTGCTA 59.928 47.619 21.98 0.00 40.76 3.49
8145 10592 1.466167 GCATGCATAATCGGGTGCTAG 59.534 52.381 14.21 0.00 41.78 3.42
8146 10593 1.466167 CATGCATAATCGGGTGCTAGC 59.534 52.381 8.10 8.10 41.78 3.42
8147 10594 0.250295 TGCATAATCGGGTGCTAGCC 60.250 55.000 13.29 3.27 41.78 3.93
8148 10595 0.035458 GCATAATCGGGTGCTAGCCT 59.965 55.000 13.29 0.00 38.30 4.58
8149 10596 1.800805 CATAATCGGGTGCTAGCCTG 58.199 55.000 13.29 2.59 32.48 4.85
8150 10597 1.344438 CATAATCGGGTGCTAGCCTGA 59.656 52.381 13.29 8.65 46.82 3.86
8151 10598 0.750850 TAATCGGGTGCTAGCCTGAC 59.249 55.000 13.29 3.43 45.74 3.51
8152 10599 1.264749 AATCGGGTGCTAGCCTGACA 61.265 55.000 13.29 0.00 45.74 3.58
8153 10600 1.680522 ATCGGGTGCTAGCCTGACAG 61.681 60.000 13.29 0.00 45.74 3.51
8154 10601 2.124942 GGGTGCTAGCCTGACAGC 60.125 66.667 13.29 2.15 38.31 4.40
8155 10602 2.665000 GGTGCTAGCCTGACAGCA 59.335 61.111 13.29 0.00 45.23 4.41
8178 10625 1.741770 CGGGTGCTAGCCTGACAAC 60.742 63.158 13.29 1.79 37.06 3.32
8179 10626 1.741770 GGGTGCTAGCCTGACAACG 60.742 63.158 13.29 0.00 31.81 4.10
8181 10628 1.292223 GTGCTAGCCTGACAACGGA 59.708 57.895 13.29 0.00 0.00 4.69
8182 10629 0.737715 GTGCTAGCCTGACAACGGAG 60.738 60.000 13.29 0.00 0.00 4.63
8183 10630 1.811679 GCTAGCCTGACAACGGAGC 60.812 63.158 2.29 0.00 0.00 4.70
8185 10632 2.890847 CTAGCCTGACAACGGAGCCG 62.891 65.000 7.48 7.48 46.03 5.52
8187 10634 4.680237 CCTGACAACGGAGCCGCA 62.680 66.667 9.14 0.00 44.19 5.69
8188 10635 2.434884 CTGACAACGGAGCCGCAT 60.435 61.111 9.14 0.00 44.19 4.73
8189 10636 2.434185 TGACAACGGAGCCGCATC 60.434 61.111 9.14 4.89 44.19 3.91
8190 10637 3.554692 GACAACGGAGCCGCATCG 61.555 66.667 9.14 0.00 44.19 3.84
8191 10638 3.982372 GACAACGGAGCCGCATCGA 62.982 63.158 9.14 0.00 44.19 3.59
8223 10670 1.134759 TCAACGGACGAGGAACAAACA 60.135 47.619 0.00 0.00 0.00 2.83
8224 10671 1.666700 CAACGGACGAGGAACAAACAA 59.333 47.619 0.00 0.00 0.00 2.83
8225 10672 1.292992 ACGGACGAGGAACAAACAAC 58.707 50.000 0.00 0.00 0.00 3.32
8226 10673 1.134610 ACGGACGAGGAACAAACAACT 60.135 47.619 0.00 0.00 0.00 3.16
8227 10674 1.525619 CGGACGAGGAACAAACAACTC 59.474 52.381 0.00 0.00 0.00 3.01
8228 10675 2.802057 CGGACGAGGAACAAACAACTCT 60.802 50.000 0.00 0.00 0.00 3.24
8229 10676 2.544267 GGACGAGGAACAAACAACTCTG 59.456 50.000 0.00 0.00 0.00 3.35
8236 10683 1.014352 ACAAACAACTCTGGTCACGC 58.986 50.000 0.00 0.00 0.00 5.34
8240 10687 0.320771 ACAACTCTGGTCACGCATCC 60.321 55.000 0.00 0.00 0.00 3.51
8252 10699 1.857217 CACGCATCCTTCTCATTCTCG 59.143 52.381 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.065088 TCCGAATCACAACTCAAAAGAGG 58.935 43.478 0.00 0.00 0.00 3.69
44 50 5.104259 AGGGGATAATGCGAGAATAATCC 57.896 43.478 0.00 0.00 0.00 3.01
47 53 5.071788 ACAAGAGGGGATAATGCGAGAATAA 59.928 40.000 0.00 0.00 0.00 1.40
54 60 2.332063 ACACAAGAGGGGATAATGCG 57.668 50.000 0.00 0.00 0.00 4.73
59 65 5.512404 CGCCAAATATACACAAGAGGGGATA 60.512 44.000 0.00 0.00 0.00 2.59
60 66 4.729868 GCCAAATATACACAAGAGGGGAT 58.270 43.478 0.00 0.00 0.00 3.85
61 67 3.433031 CGCCAAATATACACAAGAGGGGA 60.433 47.826 0.00 0.00 0.00 4.81
64 70 2.290641 GCCGCCAAATATACACAAGAGG 59.709 50.000 0.00 0.00 0.00 3.69
65 71 2.942376 TGCCGCCAAATATACACAAGAG 59.058 45.455 0.00 0.00 0.00 2.85
66 72 2.942376 CTGCCGCCAAATATACACAAGA 59.058 45.455 0.00 0.00 0.00 3.02
67 73 2.033299 CCTGCCGCCAAATATACACAAG 59.967 50.000 0.00 0.00 0.00 3.16
68 74 2.020720 CCTGCCGCCAAATATACACAA 58.979 47.619 0.00 0.00 0.00 3.33
70 76 1.961793 TCCTGCCGCCAAATATACAC 58.038 50.000 0.00 0.00 0.00 2.90
71 77 2.719531 TTCCTGCCGCCAAATATACA 57.280 45.000 0.00 0.00 0.00 2.29
72 78 4.584327 AATTTCCTGCCGCCAAATATAC 57.416 40.909 0.00 0.00 0.00 1.47
91 97 2.778299 TGCTTTGAGTGTCCGCTTAAT 58.222 42.857 0.00 0.00 0.00 1.40
105 111 3.820467 TGGACAAGATACCAGTTGCTTTG 59.180 43.478 0.00 0.00 0.00 2.77
106 112 4.074970 CTGGACAAGATACCAGTTGCTTT 58.925 43.478 0.00 0.00 45.82 3.51
133 139 0.388649 CTCGGACACAAGGAGTTCGG 60.389 60.000 0.00 0.00 38.50 4.30
155 161 1.355381 GATGGATGGATGGGTATGGCA 59.645 52.381 0.00 0.00 0.00 4.92
156 162 1.341383 GGATGGATGGATGGGTATGGC 60.341 57.143 0.00 0.00 0.00 4.40
157 163 1.994794 TGGATGGATGGATGGGTATGG 59.005 52.381 0.00 0.00 0.00 2.74
158 164 2.646297 ACTGGATGGATGGATGGGTATG 59.354 50.000 0.00 0.00 0.00 2.39
159 165 3.009748 ACTGGATGGATGGATGGGTAT 57.990 47.619 0.00 0.00 0.00 2.73
160 166 2.512910 ACTGGATGGATGGATGGGTA 57.487 50.000 0.00 0.00 0.00 3.69
161 167 2.512910 TACTGGATGGATGGATGGGT 57.487 50.000 0.00 0.00 0.00 4.51
162 168 5.519183 TTTATACTGGATGGATGGATGGG 57.481 43.478 0.00 0.00 0.00 4.00
163 169 9.532494 TTATTTTTATACTGGATGGATGGATGG 57.468 33.333 0.00 0.00 0.00 3.51
179 185 8.068892 ACGGTGGCCTTTCATTTATTTTTATA 57.931 30.769 3.32 0.00 0.00 0.98
180 186 6.941857 ACGGTGGCCTTTCATTTATTTTTAT 58.058 32.000 3.32 0.00 0.00 1.40
230 237 3.645268 ATTGGAGAAGGTGGCGGCC 62.645 63.158 13.32 13.32 0.00 6.13
248 255 4.763279 GGAAGGTTCTTAATTCGGTTTGGA 59.237 41.667 0.00 0.00 0.00 3.53
301 314 2.030805 GCCACTTGGTTAGAGTGCAAAG 60.031 50.000 0.00 0.00 42.42 2.77
360 376 0.179163 GCACGCCAATACCTGAAAGC 60.179 55.000 0.00 0.00 0.00 3.51
412 428 4.295119 AGGTGTCACGCCACGACC 62.295 66.667 10.81 0.00 36.32 4.79
418 434 4.436998 CCTCCGAGGTGTCACGCC 62.437 72.222 6.24 0.00 0.00 5.68
492 508 2.006056 GCTTGTGCAGACTGGCTAGAG 61.006 57.143 3.17 0.00 39.41 2.43
535 551 2.598632 GGCAGTGTCTCGTGTGTGC 61.599 63.158 0.00 0.00 0.00 4.57
568 586 5.356470 GCTGCTTAATTCTTGATGAGAAGGT 59.644 40.000 0.00 0.00 46.99 3.50
623 642 3.600898 AAAGCCGCCTCCCGTGTAC 62.601 63.158 0.00 0.00 34.38 2.90
624 643 3.305177 GAAAGCCGCCTCCCGTGTA 62.305 63.158 0.00 0.00 34.38 2.90
625 644 4.699522 GAAAGCCGCCTCCCGTGT 62.700 66.667 0.00 0.00 34.38 4.49
637 656 0.544223 GAGAGGGGGAAGAGGAAAGC 59.456 60.000 0.00 0.00 0.00 3.51
685 704 1.344763 AGATTCCTAGGCGAAATCGGG 59.655 52.381 2.96 0.00 40.23 5.14
738 757 6.683715 TCATCGAACCCCAAGAAAAATAAAC 58.316 36.000 0.00 0.00 0.00 2.01
748 767 0.464036 TCCGATCATCGAACCCCAAG 59.536 55.000 9.16 0.00 43.74 3.61
750 769 0.177141 GTTCCGATCATCGAACCCCA 59.823 55.000 9.16 0.00 43.74 4.96
811 830 1.376683 CCACTCCGGCCGATTTCAA 60.377 57.895 30.73 3.31 0.00 2.69
902 921 1.651240 CCAGAAACCATCAGCAGGCG 61.651 60.000 0.00 0.00 0.00 5.52
930 949 0.167470 CAACAGCAGCCACAGATTCG 59.833 55.000 0.00 0.00 0.00 3.34
932 951 0.824595 TGCAACAGCAGCCACAGATT 60.825 50.000 0.00 0.00 33.59 2.40
1077 1096 1.734477 CTCCACCAGCTTGTCGTCG 60.734 63.158 0.00 0.00 0.00 5.12
1162 1181 1.988406 GAGGGGGCACTACCGTCTT 60.988 63.158 0.00 0.00 39.24 3.01
1244 1264 7.601856 TGAAAACAGGACATGGTATCAAAATC 58.398 34.615 0.00 0.00 0.00 2.17
1250 1270 6.808212 CACAAATGAAAACAGGACATGGTATC 59.192 38.462 0.00 0.00 0.00 2.24
1285 1305 8.402472 ACATGTCTATCTAGCTAGATTAATCGC 58.598 37.037 34.98 20.86 42.66 4.58
1325 1345 2.568623 ACAGGAACAGTGAATCCCAC 57.431 50.000 13.74 0.00 46.03 4.61
1330 1350 4.823989 CCTTGAAGAACAGGAACAGTGAAT 59.176 41.667 0.00 0.00 0.00 2.57
1465 1485 0.676736 GAATCCCACACCGGCAAAAA 59.323 50.000 0.00 0.00 0.00 1.94
1476 1496 2.568623 ACAGGAACAGTGAATCCCAC 57.431 50.000 13.74 0.00 46.03 4.61
1477 1497 2.711009 AGAACAGGAACAGTGAATCCCA 59.289 45.455 13.74 0.00 36.31 4.37
1478 1498 3.425162 AGAACAGGAACAGTGAATCCC 57.575 47.619 13.74 2.46 36.31 3.85
1479 1499 4.389374 TGAAGAACAGGAACAGTGAATCC 58.611 43.478 10.55 10.55 35.88 3.01
1480 1500 5.049129 CCTTGAAGAACAGGAACAGTGAATC 60.049 44.000 0.00 0.00 0.00 2.52
1481 1501 4.823989 CCTTGAAGAACAGGAACAGTGAAT 59.176 41.667 0.00 0.00 0.00 2.57
1482 1502 4.199310 CCTTGAAGAACAGGAACAGTGAA 58.801 43.478 0.00 0.00 0.00 3.18
1483 1503 3.199946 ACCTTGAAGAACAGGAACAGTGA 59.800 43.478 0.00 0.00 0.00 3.41
1484 1504 3.545703 ACCTTGAAGAACAGGAACAGTG 58.454 45.455 0.00 0.00 0.00 3.66
1485 1505 3.933861 ACCTTGAAGAACAGGAACAGT 57.066 42.857 0.00 0.00 0.00 3.55
1486 1506 4.399303 ACAAACCTTGAAGAACAGGAACAG 59.601 41.667 0.00 0.00 0.00 3.16
1487 1507 4.157656 CACAAACCTTGAAGAACAGGAACA 59.842 41.667 0.00 0.00 0.00 3.18
1488 1508 4.672409 CACAAACCTTGAAGAACAGGAAC 58.328 43.478 0.00 0.00 0.00 3.62
1489 1509 3.130340 GCACAAACCTTGAAGAACAGGAA 59.870 43.478 0.00 0.00 0.00 3.36
1490 1510 2.687935 GCACAAACCTTGAAGAACAGGA 59.312 45.455 0.00 0.00 0.00 3.86
1491 1511 2.689983 AGCACAAACCTTGAAGAACAGG 59.310 45.455 0.00 0.00 0.00 4.00
1492 1512 3.629398 AGAGCACAAACCTTGAAGAACAG 59.371 43.478 0.00 0.00 0.00 3.16
1493 1513 3.620488 AGAGCACAAACCTTGAAGAACA 58.380 40.909 0.00 0.00 0.00 3.18
1494 1514 5.751243 TTAGAGCACAAACCTTGAAGAAC 57.249 39.130 0.00 0.00 0.00 3.01
1495 1515 5.299279 CCTTTAGAGCACAAACCTTGAAGAA 59.701 40.000 0.00 0.00 0.00 2.52
1496 1516 4.821805 CCTTTAGAGCACAAACCTTGAAGA 59.178 41.667 0.00 0.00 0.00 2.87
1497 1517 4.580580 ACCTTTAGAGCACAAACCTTGAAG 59.419 41.667 0.00 0.00 0.00 3.02
1498 1518 4.338118 CACCTTTAGAGCACAAACCTTGAA 59.662 41.667 0.00 0.00 0.00 2.69
1499 1519 3.882888 CACCTTTAGAGCACAAACCTTGA 59.117 43.478 0.00 0.00 0.00 3.02
1500 1520 3.004734 CCACCTTTAGAGCACAAACCTTG 59.995 47.826 0.00 0.00 0.00 3.61
1501 1521 3.222603 CCACCTTTAGAGCACAAACCTT 58.777 45.455 0.00 0.00 0.00 3.50
1502 1522 2.863809 CCACCTTTAGAGCACAAACCT 58.136 47.619 0.00 0.00 0.00 3.50
1503 1523 1.269723 GCCACCTTTAGAGCACAAACC 59.730 52.381 0.00 0.00 0.00 3.27
1504 1524 1.953686 TGCCACCTTTAGAGCACAAAC 59.046 47.619 0.00 0.00 0.00 2.93
1505 1525 2.356665 TGCCACCTTTAGAGCACAAA 57.643 45.000 0.00 0.00 0.00 2.83
1506 1526 2.356665 TTGCCACCTTTAGAGCACAA 57.643 45.000 0.00 0.00 34.37 3.33
1507 1527 2.161855 CATTGCCACCTTTAGAGCACA 58.838 47.619 0.00 0.00 34.37 4.57
1508 1528 2.162681 ACATTGCCACCTTTAGAGCAC 58.837 47.619 0.00 0.00 34.37 4.40
1509 1529 2.557924 CAACATTGCCACCTTTAGAGCA 59.442 45.455 0.00 0.00 0.00 4.26
1510 1530 3.221964 CAACATTGCCACCTTTAGAGC 57.778 47.619 0.00 0.00 0.00 4.09
1523 1543 6.797995 GGCATTAAAAATCAAGTGCAACATTG 59.202 34.615 0.00 0.00 41.43 2.82
1524 1544 6.485984 TGGCATTAAAAATCAAGTGCAACATT 59.514 30.769 0.00 0.00 41.43 2.71
1525 1545 5.996513 TGGCATTAAAAATCAAGTGCAACAT 59.003 32.000 0.00 0.00 41.43 2.71
1526 1546 5.363101 TGGCATTAAAAATCAAGTGCAACA 58.637 33.333 0.00 0.00 41.43 3.33
1527 1547 5.921004 TGGCATTAAAAATCAAGTGCAAC 57.079 34.783 0.00 0.00 34.45 4.17
1528 1548 6.147492 GTCATGGCATTAAAAATCAAGTGCAA 59.853 34.615 0.00 0.00 34.45 4.08
1529 1549 5.638657 GTCATGGCATTAAAAATCAAGTGCA 59.361 36.000 0.00 0.00 34.45 4.57
1530 1550 5.063817 GGTCATGGCATTAAAAATCAAGTGC 59.936 40.000 0.00 0.00 0.00 4.40
1531 1551 6.311935 CAGGTCATGGCATTAAAAATCAAGTG 59.688 38.462 0.00 0.00 0.00 3.16
1532 1552 6.014327 ACAGGTCATGGCATTAAAAATCAAGT 60.014 34.615 0.00 0.00 0.00 3.16
1533 1553 6.400568 ACAGGTCATGGCATTAAAAATCAAG 58.599 36.000 0.00 0.00 0.00 3.02
1534 1554 6.357579 ACAGGTCATGGCATTAAAAATCAA 57.642 33.333 0.00 0.00 0.00 2.57
1535 1555 5.999205 ACAGGTCATGGCATTAAAAATCA 57.001 34.783 0.00 0.00 0.00 2.57
1536 1556 7.387397 TGAAAACAGGTCATGGCATTAAAAATC 59.613 33.333 0.00 0.00 0.00 2.17
1537 1557 7.222872 TGAAAACAGGTCATGGCATTAAAAAT 58.777 30.769 0.00 0.00 0.00 1.82
1538 1558 6.586344 TGAAAACAGGTCATGGCATTAAAAA 58.414 32.000 0.00 0.00 0.00 1.94
1539 1559 6.166984 TGAAAACAGGTCATGGCATTAAAA 57.833 33.333 0.00 0.00 0.00 1.52
1540 1560 5.798125 TGAAAACAGGTCATGGCATTAAA 57.202 34.783 0.00 0.00 0.00 1.52
1541 1561 5.999205 ATGAAAACAGGTCATGGCATTAA 57.001 34.783 0.00 0.00 34.40 1.40
1542 1562 5.999205 AATGAAAACAGGTCATGGCATTA 57.001 34.783 0.00 0.00 35.87 1.90
1543 1563 4.895668 AATGAAAACAGGTCATGGCATT 57.104 36.364 0.00 0.00 35.87 3.56
1544 1564 4.040706 ACAAATGAAAACAGGTCATGGCAT 59.959 37.500 0.00 0.00 35.87 4.40
1545 1565 3.387374 ACAAATGAAAACAGGTCATGGCA 59.613 39.130 0.00 0.00 35.87 4.92
1546 1566 3.742369 CACAAATGAAAACAGGTCATGGC 59.258 43.478 0.00 0.00 35.87 4.40
1547 1567 3.742369 GCACAAATGAAAACAGGTCATGG 59.258 43.478 0.00 0.00 35.87 3.66
1548 1568 4.446385 CAGCACAAATGAAAACAGGTCATG 59.554 41.667 0.00 0.00 35.87 3.07
1549 1569 4.624015 CAGCACAAATGAAAACAGGTCAT 58.376 39.130 0.00 0.00 37.31 3.06
1550 1570 3.737663 GCAGCACAAATGAAAACAGGTCA 60.738 43.478 0.00 0.00 0.00 4.02
1551 1571 2.796593 GCAGCACAAATGAAAACAGGTC 59.203 45.455 0.00 0.00 0.00 3.85
1552 1572 2.168106 TGCAGCACAAATGAAAACAGGT 59.832 40.909 0.00 0.00 0.00 4.00
1553 1573 2.823984 TGCAGCACAAATGAAAACAGG 58.176 42.857 0.00 0.00 0.00 4.00
1554 1574 4.271533 ACAATGCAGCACAAATGAAAACAG 59.728 37.500 0.00 0.00 0.00 3.16
1555 1575 4.190001 ACAATGCAGCACAAATGAAAACA 58.810 34.783 0.00 0.00 0.00 2.83
1556 1576 4.799419 ACAATGCAGCACAAATGAAAAC 57.201 36.364 0.00 0.00 0.00 2.43
1557 1577 5.354767 TGTACAATGCAGCACAAATGAAAA 58.645 33.333 0.00 0.00 0.00 2.29
1558 1578 4.941657 TGTACAATGCAGCACAAATGAAA 58.058 34.783 0.00 0.00 0.00 2.69
1559 1579 4.037803 ACTGTACAATGCAGCACAAATGAA 59.962 37.500 0.00 0.00 37.47 2.57
1560 1580 3.569277 ACTGTACAATGCAGCACAAATGA 59.431 39.130 0.00 0.00 37.47 2.57
1561 1581 3.904571 ACTGTACAATGCAGCACAAATG 58.095 40.909 0.00 0.00 37.47 2.32
1562 1582 4.589216 AACTGTACAATGCAGCACAAAT 57.411 36.364 0.00 0.00 37.47 2.32
1563 1583 4.111198 CAAACTGTACAATGCAGCACAAA 58.889 39.130 0.00 0.00 37.47 2.83
1564 1584 3.704512 CAAACTGTACAATGCAGCACAA 58.295 40.909 0.00 0.00 37.47 3.33
1565 1585 2.543445 GCAAACTGTACAATGCAGCACA 60.543 45.455 18.09 0.00 38.63 4.57
1566 1586 2.053627 GCAAACTGTACAATGCAGCAC 58.946 47.619 18.09 0.00 38.63 4.40
1567 1587 1.334870 CGCAAACTGTACAATGCAGCA 60.335 47.619 21.04 0.00 38.69 4.41
1568 1588 1.330306 CGCAAACTGTACAATGCAGC 58.670 50.000 21.04 11.08 38.69 5.25
1569 1589 1.330306 GCGCAAACTGTACAATGCAG 58.670 50.000 21.04 16.01 38.69 4.41
1570 1590 0.385348 CGCGCAAACTGTACAATGCA 60.385 50.000 21.04 0.00 38.69 3.96
1571 1591 0.110419 TCGCGCAAACTGTACAATGC 60.110 50.000 8.75 14.69 35.49 3.56
1572 1592 2.525750 ATCGCGCAAACTGTACAATG 57.474 45.000 8.75 0.00 0.00 2.82
1573 1593 4.671880 TTAATCGCGCAAACTGTACAAT 57.328 36.364 8.75 0.00 0.00 2.71
1574 1594 4.390603 AGATTAATCGCGCAAACTGTACAA 59.609 37.500 8.75 0.00 0.00 2.41
1575 1595 3.930229 AGATTAATCGCGCAAACTGTACA 59.070 39.130 8.75 0.00 0.00 2.90
1576 1596 4.516092 AGATTAATCGCGCAAACTGTAC 57.484 40.909 8.75 0.00 0.00 2.90
1577 1597 4.208460 GCTAGATTAATCGCGCAAACTGTA 59.792 41.667 20.17 1.89 0.00 2.74
1578 1598 3.001330 GCTAGATTAATCGCGCAAACTGT 59.999 43.478 20.17 0.94 0.00 3.55
1579 1599 3.246226 AGCTAGATTAATCGCGCAAACTG 59.754 43.478 24.24 0.00 32.08 3.16
1580 1600 3.458189 AGCTAGATTAATCGCGCAAACT 58.542 40.909 24.24 0.24 32.08 2.66
1581 1601 3.861569 AGCTAGATTAATCGCGCAAAC 57.138 42.857 24.24 8.38 32.08 2.93
1582 1602 4.866921 TCTAGCTAGATTAATCGCGCAAA 58.133 39.130 19.72 15.32 32.08 3.68
1583 1603 4.499037 TCTAGCTAGATTAATCGCGCAA 57.501 40.909 19.72 12.65 32.08 4.85
1584 1604 4.703645 ATCTAGCTAGATTAATCGCGCA 57.296 40.909 27.31 14.28 39.96 6.09
1585 1605 5.905181 GTCTATCTAGCTAGATTAATCGCGC 59.095 44.000 34.98 18.47 42.66 6.86
1586 1606 7.006187 TGTCTATCTAGCTAGATTAATCGCG 57.994 40.000 34.98 17.37 42.66 5.87
1587 1607 8.402472 ACATGTCTATCTAGCTAGATTAATCGC 58.598 37.037 34.98 20.86 42.66 4.58
1598 1618 8.970859 AGCAAAAATAACATGTCTATCTAGCT 57.029 30.769 0.00 2.02 0.00 3.32
1602 1622 9.672673 ACACTAGCAAAAATAACATGTCTATCT 57.327 29.630 0.00 0.00 0.00 1.98
1603 1623 9.708222 CACACTAGCAAAAATAACATGTCTATC 57.292 33.333 0.00 0.00 0.00 2.08
1604 1624 8.677300 CCACACTAGCAAAAATAACATGTCTAT 58.323 33.333 0.00 0.00 0.00 1.98
1605 1625 7.120579 CCCACACTAGCAAAAATAACATGTCTA 59.879 37.037 0.00 0.00 0.00 2.59
1606 1626 6.071952 CCCACACTAGCAAAAATAACATGTCT 60.072 38.462 0.00 0.00 0.00 3.41
1607 1627 6.072175 TCCCACACTAGCAAAAATAACATGTC 60.072 38.462 0.00 0.00 0.00 3.06
1608 1628 5.772672 TCCCACACTAGCAAAAATAACATGT 59.227 36.000 0.00 0.00 0.00 3.21
1609 1629 6.266168 TCCCACACTAGCAAAAATAACATG 57.734 37.500 0.00 0.00 0.00 3.21
1610 1630 7.178274 TGAATCCCACACTAGCAAAAATAACAT 59.822 33.333 0.00 0.00 0.00 2.71
1611 1631 6.491745 TGAATCCCACACTAGCAAAAATAACA 59.508 34.615 0.00 0.00 0.00 2.41
1612 1632 6.806739 GTGAATCCCACACTAGCAAAAATAAC 59.193 38.462 0.00 0.00 45.03 1.89
1613 1633 6.919721 GTGAATCCCACACTAGCAAAAATAA 58.080 36.000 0.00 0.00 45.03 1.40
1614 1634 6.509418 GTGAATCCCACACTAGCAAAAATA 57.491 37.500 0.00 0.00 45.03 1.40
1615 1635 5.391312 GTGAATCCCACACTAGCAAAAAT 57.609 39.130 0.00 0.00 45.03 1.82
1701 1721 9.804758 CCTACTGTCAAAGGACTTAATTACTAG 57.195 37.037 0.00 0.00 44.61 2.57
1706 1726 8.822805 TCATACCTACTGTCAAAGGACTTAATT 58.177 33.333 7.71 0.00 44.61 1.40
1707 1727 8.375493 TCATACCTACTGTCAAAGGACTTAAT 57.625 34.615 7.71 0.00 44.61 1.40
1708 1728 7.786046 TCATACCTACTGTCAAAGGACTTAA 57.214 36.000 7.71 0.00 44.61 1.85
1709 1729 7.069578 GGATCATACCTACTGTCAAAGGACTTA 59.930 40.741 7.71 0.00 44.61 2.24
1720 1740 4.544564 ACCTCAGGATCATACCTACTGT 57.455 45.455 0.00 0.00 38.32 3.55
1729 1749 5.983333 AAATGGTAGAACCTCAGGATCAT 57.017 39.130 0.00 0.00 39.58 2.45
1730 1750 5.964477 ACTAAATGGTAGAACCTCAGGATCA 59.036 40.000 0.00 0.00 39.58 2.92
1731 1751 6.487299 ACTAAATGGTAGAACCTCAGGATC 57.513 41.667 0.00 0.00 39.58 3.36
1760 1781 5.144100 AGTCCAGGAATATCTACTGTCCAG 58.856 45.833 0.00 0.00 32.19 3.86
2006 2028 2.623889 AGTATAGGCACACGACAGATCC 59.376 50.000 0.00 0.00 0.00 3.36
2062 2084 1.135689 GTGGTGCCTTTGAGCGTTATG 60.136 52.381 0.00 0.00 34.65 1.90
2063 2085 1.165270 GTGGTGCCTTTGAGCGTTAT 58.835 50.000 0.00 0.00 34.65 1.89
2125 2148 0.246635 TACTGCCTCCGTGCTCTTTC 59.753 55.000 0.00 0.00 0.00 2.62
2240 2263 8.518430 TGGCACAATAATGTAGAACAACATAT 57.482 30.769 0.00 0.00 37.82 1.78
2279 2302 6.055588 GGCTTATAGCACTGAATAAACAGGA 58.944 40.000 0.67 0.00 44.75 3.86
2383 2406 9.340695 TCGACAAAAATTTAGTTATGCATCAAG 57.659 29.630 0.19 0.00 0.00 3.02
2397 2420 8.417780 TCACAACAAATGATCGACAAAAATTT 57.582 26.923 0.00 0.00 0.00 1.82
3094 3117 1.133513 TGGTGGAAGGTTGCAGTGAAT 60.134 47.619 0.00 0.00 0.00 2.57
3109 3132 6.855914 GCACAATATAATATTGAACGTGGTGG 59.144 38.462 0.00 0.00 33.51 4.61
3221 3244 6.820470 TTGCATAAAGTTGTGTTAAGCAAC 57.180 33.333 12.44 12.44 39.12 4.17
3657 3680 5.278169 GCAAACAAGATGTGAGAGATGTGTT 60.278 40.000 0.00 0.00 0.00 3.32
3739 3763 0.544357 CCCTGGTGACCTCTGGTGTA 60.544 60.000 2.11 0.00 35.25 2.90
4011 4035 6.375945 AGCGCATGTATGTTTTTATCATCA 57.624 33.333 11.47 0.00 0.00 3.07
4159 4185 7.488150 TCAACTCGCATTGATAACTAACACTAG 59.512 37.037 0.00 0.00 33.62 2.57
4256 4283 5.189145 GTGGTTTTCTCTTCCTATCCAGGTA 59.811 44.000 0.00 0.00 43.18 3.08
4337 4364 8.494016 AAGGAGAAAGATAAAAGATTACCACG 57.506 34.615 0.00 0.00 0.00 4.94
4353 4380 5.182001 CCACTGTAACCAATGAAGGAGAAAG 59.818 44.000 0.00 0.00 0.00 2.62
4354 4381 5.070001 CCACTGTAACCAATGAAGGAGAAA 58.930 41.667 0.00 0.00 0.00 2.52
4387 4414 1.796017 TATTCATGTAGTGGGCCCGA 58.204 50.000 19.37 2.67 0.00 5.14
4394 4421 5.299279 GGTTGGGACCAATATTCATGTAGTG 59.701 44.000 7.10 0.00 45.77 2.74
4466 4493 6.446781 ACCTAATTCATCGAAGTCGTAGAA 57.553 37.500 11.01 11.01 39.69 2.10
4471 4498 3.664486 CGCTACCTAATTCATCGAAGTCG 59.336 47.826 0.00 0.00 41.45 4.18
4518 4545 2.419324 GCTTCCAGAACTCTGCATTCAG 59.581 50.000 0.89 0.00 42.47 3.02
5304 5591 2.082231 CTCAGTGGCTTCTTCACATGG 58.918 52.381 0.00 0.00 37.58 3.66
5566 5853 1.150135 TCTTCCAACAGTCCCTCCTCT 59.850 52.381 0.00 0.00 0.00 3.69
5661 5948 2.486982 CTGCTCAATGACTTCACCTTGG 59.513 50.000 0.00 0.00 0.00 3.61
5703 5990 2.806244 ACGTTGAAGCGTTCTAAAGCAT 59.194 40.909 3.55 0.00 43.04 3.79
5847 6134 4.900635 ATATTCAACAAATCGTGGCTCC 57.099 40.909 0.00 0.00 0.00 4.70
5946 6237 1.272807 ATCTTTTTCGGACGGAGGGA 58.727 50.000 0.00 0.00 0.00 4.20
5947 6238 1.737793 CAATCTTTTTCGGACGGAGGG 59.262 52.381 0.00 0.00 0.00 4.30
5948 6239 2.415512 GACAATCTTTTTCGGACGGAGG 59.584 50.000 0.00 0.00 0.00 4.30
5949 6240 2.415512 GGACAATCTTTTTCGGACGGAG 59.584 50.000 0.00 0.00 0.00 4.63
5950 6241 2.419667 GGACAATCTTTTTCGGACGGA 58.580 47.619 0.00 0.00 0.00 4.69
5951 6242 1.467342 GGGACAATCTTTTTCGGACGG 59.533 52.381 0.00 0.00 0.00 4.79
5952 6243 2.415512 GAGGGACAATCTTTTTCGGACG 59.584 50.000 0.00 0.00 0.00 4.79
5953 6244 3.408634 TGAGGGACAATCTTTTTCGGAC 58.591 45.455 0.00 0.00 0.00 4.79
5954 6245 3.780804 TGAGGGACAATCTTTTTCGGA 57.219 42.857 0.00 0.00 0.00 4.55
5955 6246 4.846779 TTTGAGGGACAATCTTTTTCGG 57.153 40.909 0.00 0.00 38.36 4.30
5956 6247 5.048083 TCCATTTGAGGGACAATCTTTTTCG 60.048 40.000 0.00 0.00 38.36 3.46
5957 6248 6.345096 TCCATTTGAGGGACAATCTTTTTC 57.655 37.500 0.00 0.00 38.36 2.29
5958 6249 6.270695 ACATCCATTTGAGGGACAATCTTTTT 59.729 34.615 0.00 0.00 37.23 1.94
5959 6250 5.781818 ACATCCATTTGAGGGACAATCTTTT 59.218 36.000 0.00 0.00 37.23 2.27
5960 6251 5.336102 ACATCCATTTGAGGGACAATCTTT 58.664 37.500 0.00 0.00 37.23 2.52
5961 6252 4.939255 ACATCCATTTGAGGGACAATCTT 58.061 39.130 0.00 0.00 37.23 2.40
5962 6253 4.598036 ACATCCATTTGAGGGACAATCT 57.402 40.909 0.00 0.00 37.23 2.40
5963 6254 6.302269 AGATACATCCATTTGAGGGACAATC 58.698 40.000 0.00 0.00 37.23 2.67
5964 6255 6.271585 AGATACATCCATTTGAGGGACAAT 57.728 37.500 0.00 0.00 37.23 2.71
5965 6256 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
5966 6257 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
5967 6258 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
5968 6259 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
5969 6260 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
5970 6261 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
5971 6262 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
5972 6263 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
5973 6264 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
5974 6265 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
5975 6266 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
5976 6267 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
5977 6268 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
5978 6269 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
5990 6281 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
5991 6282 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
5992 6283 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
5993 6284 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
5994 6285 7.716998 CCAAATGGATGTATCTAGCACTAACTT 59.283 37.037 0.00 0.00 37.39 2.66
5995 6286 7.220030 CCAAATGGATGTATCTAGCACTAACT 58.780 38.462 0.00 0.00 37.39 2.24
5996 6287 6.428159 CCCAAATGGATGTATCTAGCACTAAC 59.572 42.308 0.00 0.00 37.39 2.34
5997 6288 6.328934 TCCCAAATGGATGTATCTAGCACTAA 59.671 38.462 0.00 0.00 38.61 2.24
5998 6289 5.843969 TCCCAAATGGATGTATCTAGCACTA 59.156 40.000 0.00 0.00 38.61 2.74
5999 6290 4.660303 TCCCAAATGGATGTATCTAGCACT 59.340 41.667 0.00 0.00 38.61 4.40
6000 6291 4.973168 TCCCAAATGGATGTATCTAGCAC 58.027 43.478 0.00 0.00 38.61 4.40
6001 6292 4.907269 TCTCCCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 44.07 3.49
6002 6293 5.221722 TGTCTCCCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 44.07 3.42
6003 6294 6.425210 TGTCTCCCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 44.07 2.43
6004 6295 6.688922 GCTTGTCTCCCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 44.07 1.98
6005 6296 5.688807 CTTGTCTCCCAAATGGATGTATCT 58.311 41.667 0.00 0.00 44.07 1.98
6006 6297 4.276926 GCTTGTCTCCCAAATGGATGTATC 59.723 45.833 0.00 0.00 44.07 2.24
6007 6298 4.079558 AGCTTGTCTCCCAAATGGATGTAT 60.080 41.667 0.00 0.00 44.07 2.29
6008 6299 3.266772 AGCTTGTCTCCCAAATGGATGTA 59.733 43.478 0.00 0.00 44.07 2.29
6009 6300 2.042162 AGCTTGTCTCCCAAATGGATGT 59.958 45.455 0.00 0.00 44.07 3.06
6010 6301 2.731572 AGCTTGTCTCCCAAATGGATG 58.268 47.619 0.00 0.00 44.07 3.51
6011 6302 3.094572 CAAGCTTGTCTCCCAAATGGAT 58.905 45.455 18.65 0.00 44.07 3.41
6012 6303 2.517959 CAAGCTTGTCTCCCAAATGGA 58.482 47.619 18.65 0.00 42.41 3.41
6013 6304 1.547372 CCAAGCTTGTCTCCCAAATGG 59.453 52.381 24.35 1.81 31.20 3.16
6014 6305 1.547372 CCCAAGCTTGTCTCCCAAATG 59.453 52.381 24.35 5.47 31.20 2.32
6015 6306 1.550869 CCCCAAGCTTGTCTCCCAAAT 60.551 52.381 24.35 0.00 31.20 2.32
6016 6307 0.178964 CCCCAAGCTTGTCTCCCAAA 60.179 55.000 24.35 0.00 31.20 3.28
6017 6308 1.460255 CCCCAAGCTTGTCTCCCAA 59.540 57.895 24.35 0.00 0.00 4.12
6018 6309 3.170362 CCCCAAGCTTGTCTCCCA 58.830 61.111 24.35 0.00 0.00 4.37
6019 6310 2.361737 GCCCCAAGCTTGTCTCCC 60.362 66.667 24.35 5.08 38.99 4.30
6020 6311 1.228552 TTGCCCCAAGCTTGTCTCC 60.229 57.895 24.35 10.52 44.23 3.71
6021 6312 2.261215 CTTGCCCCAAGCTTGTCTC 58.739 57.895 24.35 12.80 44.23 3.36
6022 6313 4.507969 CTTGCCCCAAGCTTGTCT 57.492 55.556 24.35 0.00 44.23 3.41
6029 6320 0.319813 CCGAAAAAGCTTGCCCCAAG 60.320 55.000 0.00 0.74 43.57 3.61
6030 6321 0.757188 TCCGAAAAAGCTTGCCCCAA 60.757 50.000 0.00 0.00 0.00 4.12
6031 6322 1.152652 TCCGAAAAAGCTTGCCCCA 60.153 52.632 0.00 0.00 0.00 4.96
6032 6323 1.289066 GTCCGAAAAAGCTTGCCCC 59.711 57.895 0.00 0.00 0.00 5.80
6033 6324 1.081442 CGTCCGAAAAAGCTTGCCC 60.081 57.895 0.00 0.00 0.00 5.36
6034 6325 1.081442 CCGTCCGAAAAAGCTTGCC 60.081 57.895 0.00 0.00 0.00 4.52
6035 6326 0.110192 CTCCGTCCGAAAAAGCTTGC 60.110 55.000 0.00 0.00 0.00 4.01
6036 6327 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
6037 6328 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
6038 6329 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
6039 6330 0.604511 TTCCCTCCGTCCGAAAAAGC 60.605 55.000 0.00 0.00 0.00 3.51
6040 6331 2.109425 ATTCCCTCCGTCCGAAAAAG 57.891 50.000 0.00 0.00 0.00 2.27
6041 6332 2.302445 TGTATTCCCTCCGTCCGAAAAA 59.698 45.455 0.00 0.00 0.00 1.94
6042 6333 1.901159 TGTATTCCCTCCGTCCGAAAA 59.099 47.619 0.00 0.00 0.00 2.29
6043 6334 1.559368 TGTATTCCCTCCGTCCGAAA 58.441 50.000 0.00 0.00 0.00 3.46
6044 6335 1.559368 TTGTATTCCCTCCGTCCGAA 58.441 50.000 0.00 0.00 0.00 4.30
6045 6336 1.784358 ATTGTATTCCCTCCGTCCGA 58.216 50.000 0.00 0.00 0.00 4.55
6046 6337 3.955650 ATATTGTATTCCCTCCGTCCG 57.044 47.619 0.00 0.00 0.00 4.79
6047 6338 6.793505 AGATATATTGTATTCCCTCCGTCC 57.206 41.667 0.00 0.00 0.00 4.79
6048 6339 9.503399 AAAAAGATATATTGTATTCCCTCCGTC 57.497 33.333 0.00 0.00 0.00 4.79
6235 6526 7.667043 TTTTGTAGCGAATGAAGACAATACT 57.333 32.000 0.00 0.00 30.61 2.12
6543 6834 6.202954 CCTTAAGGGCTTGAAGATTACGTATG 59.797 42.308 14.25 0.00 0.00 2.39
6588 6879 7.728532 ACCAAGTCTATTGTAACCCTGAAAAAT 59.271 33.333 0.00 0.00 0.00 1.82
6755 7046 2.888594 TGAATGCGTAGAGGTGTTAGC 58.111 47.619 0.00 0.00 0.00 3.09
6790 7081 8.695456 CCCATGGTTATAGGCATATTAAAATCC 58.305 37.037 11.73 0.00 0.00 3.01
6806 7097 4.534647 TTTGGTAGATGCCCATGGTTAT 57.465 40.909 11.73 4.20 0.00 1.89
6849 7140 7.286087 TCAGTTGCTAAATTGCCATCAGATATT 59.714 33.333 0.00 0.00 0.00 1.28
7114 7408 1.225704 CTTGGACAGATGAGGCCCC 59.774 63.158 0.00 0.00 0.00 5.80
7472 7795 7.410120 AAAGAGAAATCCTCAAACTGTTGTT 57.590 32.000 0.00 0.00 44.40 2.83
7478 7801 6.044404 TGGAGGTAAAGAGAAATCCTCAAACT 59.956 38.462 10.88 0.00 44.33 2.66
7479 7802 6.238648 TGGAGGTAAAGAGAAATCCTCAAAC 58.761 40.000 10.88 0.00 44.33 2.93
7514 7837 2.777692 GAGGGGATGAATGTCCTAACCA 59.222 50.000 0.00 0.00 38.38 3.67
7542 7865 1.375396 TCCACAGATTTGCCGACGG 60.375 57.895 10.29 10.29 0.00 4.79
7584 7907 3.790437 CCATCACCGGCTGCTCCT 61.790 66.667 0.00 0.00 0.00 3.69
7616 7939 2.283145 ACCAGTCAAAGCTGAAGCAT 57.717 45.000 4.90 0.00 45.16 3.79
7633 7956 4.838904 AGACCACCCAATCTAAACTACC 57.161 45.455 0.00 0.00 0.00 3.18
7643 7966 2.375014 AAACCGAAAGACCACCCAAT 57.625 45.000 0.00 0.00 0.00 3.16
7668 7991 6.498304 CATCCGATGGACAAATTTAAAGAGG 58.502 40.000 0.00 0.00 32.98 3.69
7699 8024 6.833416 ACAGAAATCTACACTAGAGCTCTGAT 59.167 38.462 26.78 15.50 43.38 2.90
7768 8103 1.132453 GAAGCGCCTAACACCAAATCC 59.868 52.381 2.29 0.00 0.00 3.01
7802 8137 3.275999 TGAGCCACAGTCATCATCATTG 58.724 45.455 0.00 0.00 0.00 2.82
7808 10240 1.556373 CCCCTGAGCCACAGTCATCA 61.556 60.000 7.55 0.00 44.40 3.07
7846 10284 6.370718 CGTATTTTTAGAGTACTTTGCCTGGT 59.629 38.462 0.00 0.00 0.00 4.00
7849 10287 6.470278 ACCGTATTTTTAGAGTACTTTGCCT 58.530 36.000 0.00 0.00 0.00 4.75
7883 10321 7.871463 TCAAGTAAGTTAAGAGTACTCCAAAGC 59.129 37.037 19.38 7.28 0.00 3.51
7897 10335 8.585881 AGAGATACAACTGCTCAAGTAAGTTAA 58.414 33.333 0.00 0.00 38.56 2.01
7931 10371 2.222027 CCAGGAAATAAGACCGCCATC 58.778 52.381 0.00 0.00 0.00 3.51
7940 10381 2.280628 GCGGAGACACCAGGAAATAAG 58.719 52.381 0.00 0.00 38.90 1.73
7994 10435 1.984026 CCCCAAAGTGATGTGGCCC 60.984 63.158 0.00 0.00 33.21 5.80
8115 10562 2.680974 TTATGCATGCTCTCCGCCCC 62.681 60.000 20.33 0.00 38.05 5.80
8121 10568 1.802960 CACCCGATTATGCATGCTCTC 59.197 52.381 20.33 9.00 0.00 3.20
8123 10570 0.239347 GCACCCGATTATGCATGCTC 59.761 55.000 20.33 6.93 41.65 4.26
8125 10572 1.466167 CTAGCACCCGATTATGCATGC 59.534 52.381 11.82 11.82 44.59 4.06
8126 10573 1.466167 GCTAGCACCCGATTATGCATG 59.534 52.381 10.63 0.00 44.59 4.06
8127 10574 1.611673 GGCTAGCACCCGATTATGCAT 60.612 52.381 18.24 3.79 44.59 3.96
8128 10575 0.250295 GGCTAGCACCCGATTATGCA 60.250 55.000 18.24 0.00 44.59 3.96
8129 10576 0.035458 AGGCTAGCACCCGATTATGC 59.965 55.000 18.24 0.00 42.39 3.14
8130 10577 1.344438 TCAGGCTAGCACCCGATTATG 59.656 52.381 18.24 0.97 0.00 1.90
8133 10580 1.264749 TGTCAGGCTAGCACCCGATT 61.265 55.000 18.24 0.00 0.00 3.34
8134 10581 1.680522 CTGTCAGGCTAGCACCCGAT 61.681 60.000 18.24 0.00 0.00 4.18
8135 10582 2.283604 TGTCAGGCTAGCACCCGA 60.284 61.111 18.24 3.75 0.00 5.14
8136 10583 2.185350 CTGTCAGGCTAGCACCCG 59.815 66.667 18.24 1.13 0.00 5.28
8137 10584 2.124942 GCTGTCAGGCTAGCACCC 60.125 66.667 18.24 0.00 39.67 4.61
8138 10585 2.665000 TGCTGTCAGGCTAGCACC 59.335 61.111 18.24 0.00 44.36 5.01
8141 10588 2.064762 CGATTATGCTGTCAGGCTAGC 58.935 52.381 6.04 6.04 40.29 3.42
8142 10589 2.611473 CCCGATTATGCTGTCAGGCTAG 60.611 54.545 1.14 0.00 0.00 3.42
8143 10590 1.344438 CCCGATTATGCTGTCAGGCTA 59.656 52.381 1.14 0.00 0.00 3.93
8144 10591 0.107456 CCCGATTATGCTGTCAGGCT 59.893 55.000 1.14 0.00 0.00 4.58
8145 10592 0.179045 ACCCGATTATGCTGTCAGGC 60.179 55.000 1.14 0.00 0.00 4.85
8146 10593 1.586422 CACCCGATTATGCTGTCAGG 58.414 55.000 1.14 0.00 0.00 3.86
8147 10594 0.940126 GCACCCGATTATGCTGTCAG 59.060 55.000 0.00 0.00 38.84 3.51
8148 10595 3.079131 GCACCCGATTATGCTGTCA 57.921 52.632 0.00 0.00 38.84 3.58
8153 10600 0.035458 AGGCTAGCACCCGATTATGC 59.965 55.000 18.24 0.00 42.39 3.14
8154 10601 1.344438 TCAGGCTAGCACCCGATTATG 59.656 52.381 18.24 0.97 0.00 1.90
8155 10602 1.344763 GTCAGGCTAGCACCCGATTAT 59.655 52.381 18.24 0.00 0.00 1.28
8156 10603 0.750850 GTCAGGCTAGCACCCGATTA 59.249 55.000 18.24 0.00 0.00 1.75
8157 10604 1.264749 TGTCAGGCTAGCACCCGATT 61.265 55.000 18.24 0.00 0.00 3.34
8178 10625 1.658717 CTACTTCGATGCGGCTCCG 60.659 63.158 3.56 3.56 43.09 4.63
8179 10626 0.102481 TTCTACTTCGATGCGGCTCC 59.898 55.000 0.00 0.00 0.00 4.70
8181 10628 0.528684 GCTTCTACTTCGATGCGGCT 60.529 55.000 0.00 0.00 0.00 5.52
8182 10629 1.812214 CGCTTCTACTTCGATGCGGC 61.812 60.000 11.63 0.00 46.99 6.53
8183 10630 2.208074 CGCTTCTACTTCGATGCGG 58.792 57.895 11.63 0.00 46.99 5.69
8185 10632 2.259618 TGAACGCTTCTACTTCGATGC 58.740 47.619 0.00 0.00 0.00 3.91
8186 10633 3.241364 CGTTGAACGCTTCTACTTCGATG 60.241 47.826 4.26 0.00 33.65 3.84
8187 10634 2.915463 CGTTGAACGCTTCTACTTCGAT 59.085 45.455 4.26 0.00 33.65 3.59
8188 10635 2.313234 CGTTGAACGCTTCTACTTCGA 58.687 47.619 4.26 0.00 33.65 3.71
8189 10636 1.385743 CCGTTGAACGCTTCTACTTCG 59.614 52.381 12.95 0.00 40.91 3.79
8190 10637 2.407696 GTCCGTTGAACGCTTCTACTTC 59.592 50.000 12.95 0.00 40.91 3.01
8191 10638 2.401351 GTCCGTTGAACGCTTCTACTT 58.599 47.619 12.95 0.00 40.91 2.24
8223 10670 0.687354 AAGGATGCGTGACCAGAGTT 59.313 50.000 0.00 0.00 0.00 3.01
8224 10671 0.247736 GAAGGATGCGTGACCAGAGT 59.752 55.000 0.00 0.00 0.00 3.24
8225 10672 0.534412 AGAAGGATGCGTGACCAGAG 59.466 55.000 0.00 0.00 0.00 3.35
8226 10673 0.532573 GAGAAGGATGCGTGACCAGA 59.467 55.000 0.00 0.00 0.00 3.86
8227 10674 0.247460 TGAGAAGGATGCGTGACCAG 59.753 55.000 0.00 0.00 0.00 4.00
8228 10675 0.904649 ATGAGAAGGATGCGTGACCA 59.095 50.000 0.00 0.00 0.00 4.02
8229 10676 1.936547 GAATGAGAAGGATGCGTGACC 59.063 52.381 0.00 0.00 0.00 4.02
8236 10683 3.549471 CGTGAACGAGAATGAGAAGGATG 59.451 47.826 0.00 0.00 43.02 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.