Multiple sequence alignment - TraesCS3A01G306000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G306000 chr3A 100.000 3533 0 0 1 3533 542228144 542231676 0.000000e+00 6525.0
1 TraesCS3A01G306000 chr3D 94.418 2347 85 26 572 2896 409013134 409010812 0.000000e+00 3567.0
2 TraesCS3A01G306000 chr3D 84.794 776 87 22 2776 3533 409010823 409010061 0.000000e+00 750.0
3 TraesCS3A01G306000 chr3D 90.116 172 16 1 407 578 409013333 409013163 4.590000e-54 222.0
4 TraesCS3A01G306000 chr3B 94.501 2164 92 13 575 2733 534537745 534535604 0.000000e+00 3312.0
5 TraesCS3A01G306000 chrUn 85.468 406 46 5 1 405 103278751 103279144 9.130000e-111 411.0
6 TraesCS3A01G306000 chrUn 85.676 370 46 5 38 407 102394627 102394265 1.990000e-102 383.0
7 TraesCS3A01G306000 chrUn 85.067 375 46 7 38 408 290006423 290006791 1.200000e-99 374.0
8 TraesCS3A01G306000 chrUn 84.350 377 47 7 38 408 288970845 288970475 3.350000e-95 359.0
9 TraesCS3A01G306000 chr1D 85.504 407 44 8 1 405 455992015 455992408 9.130000e-111 411.0
10 TraesCS3A01G306000 chr1B 84.878 410 53 4 1 410 27158888 27159288 4.250000e-109 405.0
11 TraesCS3A01G306000 chr4A 85.638 376 50 3 40 415 740844546 740844175 3.310000e-105 392.0
12 TraesCS3A01G306000 chr4D 86.141 368 43 5 38 405 101497209 101496850 1.190000e-104 390.0
13 TraesCS3A01G306000 chr6B 83.812 383 54 6 38 415 653191721 653191342 1.210000e-94 357.0
14 TraesCS3A01G306000 chr5A 83.193 357 50 4 1 357 383187174 383186828 5.690000e-83 318.0
15 TraesCS3A01G306000 chr1A 96.875 32 1 0 1217 1248 63331538 63331507 2.000000e-03 54.7
16 TraesCS3A01G306000 chr1A 96.875 32 1 0 1217 1248 63480740 63480709 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G306000 chr3A 542228144 542231676 3532 False 6525 6525 100.000 1 3533 1 chr3A.!!$F1 3532
1 TraesCS3A01G306000 chr3D 409010061 409013333 3272 True 1513 3567 89.776 407 3533 3 chr3D.!!$R1 3126
2 TraesCS3A01G306000 chr3B 534535604 534537745 2141 True 3312 3312 94.501 575 2733 1 chr3B.!!$R1 2158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 360 0.037326 CTCTCCCGCTGCTTGTTGTA 60.037 55.0 0.00 0.00 0.00 2.41 F
397 398 0.096802 TTGCAACGCACGAGCATATG 59.903 50.0 13.57 0.00 38.71 1.78 F
1369 1406 0.390340 CCGCTACTTTCAGCAGCTGA 60.390 55.0 21.85 21.85 41.88 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 2120 0.179065 TTCATGCTCGATGGCCTCAG 60.179 55.000 3.32 0.0 32.26 3.35 R
2210 2247 1.296392 CCCAGCTTGGACACGATCA 59.704 57.895 0.00 0.0 40.96 2.92 R
2588 2626 0.034337 TTACACAAGAGGGTCACGGC 59.966 55.000 0.00 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.831883 CATGCCTGGTTATGCGCT 58.168 55.556 9.73 0.00 0.00 5.92
18 19 3.005205 CATGCCTGGTTATGCGCTA 57.995 52.632 9.73 0.00 0.00 4.26
19 20 1.308047 CATGCCTGGTTATGCGCTAA 58.692 50.000 9.73 1.78 0.00 3.09
20 21 1.881973 CATGCCTGGTTATGCGCTAAT 59.118 47.619 9.73 0.00 0.00 1.73
21 22 2.051334 TGCCTGGTTATGCGCTAATT 57.949 45.000 9.73 0.00 0.00 1.40
22 23 3.201353 TGCCTGGTTATGCGCTAATTA 57.799 42.857 9.73 0.00 0.00 1.40
23 24 3.750371 TGCCTGGTTATGCGCTAATTAT 58.250 40.909 9.73 0.00 0.00 1.28
24 25 3.501828 TGCCTGGTTATGCGCTAATTATG 59.498 43.478 9.73 0.00 0.00 1.90
25 26 3.670627 GCCTGGTTATGCGCTAATTATGC 60.671 47.826 9.73 0.00 0.00 3.14
26 27 3.753272 CCTGGTTATGCGCTAATTATGCT 59.247 43.478 9.73 1.38 0.00 3.79
27 28 4.935205 CCTGGTTATGCGCTAATTATGCTA 59.065 41.667 9.73 0.00 0.00 3.49
28 29 5.411361 CCTGGTTATGCGCTAATTATGCTAA 59.589 40.000 9.73 5.24 0.00 3.09
29 30 6.094048 CCTGGTTATGCGCTAATTATGCTAAT 59.906 38.462 9.73 0.00 0.00 1.73
30 31 6.841119 TGGTTATGCGCTAATTATGCTAATG 58.159 36.000 9.73 0.00 0.00 1.90
31 32 6.652900 TGGTTATGCGCTAATTATGCTAATGA 59.347 34.615 9.73 0.00 0.00 2.57
32 33 7.174080 TGGTTATGCGCTAATTATGCTAATGAA 59.826 33.333 9.73 0.00 0.00 2.57
33 34 8.020819 GGTTATGCGCTAATTATGCTAATGAAA 58.979 33.333 9.73 0.00 0.00 2.69
34 35 8.840867 GTTATGCGCTAATTATGCTAATGAAAC 58.159 33.333 9.73 0.00 0.00 2.78
35 36 6.370433 TGCGCTAATTATGCTAATGAAACA 57.630 33.333 9.73 0.00 0.00 2.83
36 37 6.969366 TGCGCTAATTATGCTAATGAAACAT 58.031 32.000 9.73 0.00 0.00 2.71
37 38 7.424803 TGCGCTAATTATGCTAATGAAACATT 58.575 30.769 9.73 0.00 0.00 2.71
38 39 7.379262 TGCGCTAATTATGCTAATGAAACATTG 59.621 33.333 9.73 0.22 0.00 2.82
39 40 7.591057 GCGCTAATTATGCTAATGAAACATTGA 59.409 33.333 0.00 0.00 0.00 2.57
40 41 9.449550 CGCTAATTATGCTAATGAAACATTGAA 57.550 29.630 7.16 0.00 0.00 2.69
71 72 7.637631 TTTATGTGCTGCAATTAGTAATCCA 57.362 32.000 2.77 0.00 0.00 3.41
72 73 7.822161 TTATGTGCTGCAATTAGTAATCCAT 57.178 32.000 2.77 2.05 0.00 3.41
73 74 5.756195 TGTGCTGCAATTAGTAATCCATC 57.244 39.130 2.77 0.00 0.00 3.51
74 75 4.580167 TGTGCTGCAATTAGTAATCCATCC 59.420 41.667 2.77 0.00 0.00 3.51
75 76 3.814842 TGCTGCAATTAGTAATCCATCCG 59.185 43.478 0.00 0.00 0.00 4.18
76 77 3.189287 GCTGCAATTAGTAATCCATCCGG 59.811 47.826 0.00 0.00 0.00 5.14
77 78 4.389374 CTGCAATTAGTAATCCATCCGGT 58.611 43.478 0.00 0.00 0.00 5.28
78 79 4.787551 TGCAATTAGTAATCCATCCGGTT 58.212 39.130 0.00 0.00 0.00 4.44
79 80 5.931294 TGCAATTAGTAATCCATCCGGTTA 58.069 37.500 0.00 0.00 0.00 2.85
80 81 6.539173 TGCAATTAGTAATCCATCCGGTTAT 58.461 36.000 0.00 0.00 0.00 1.89
81 82 7.681679 TGCAATTAGTAATCCATCCGGTTATA 58.318 34.615 0.00 0.00 0.00 0.98
82 83 8.325787 TGCAATTAGTAATCCATCCGGTTATAT 58.674 33.333 0.00 0.00 0.00 0.86
83 84 8.827677 GCAATTAGTAATCCATCCGGTTATATC 58.172 37.037 0.00 0.00 0.00 1.63
84 85 9.884636 CAATTAGTAATCCATCCGGTTATATCA 57.115 33.333 0.00 0.00 0.00 2.15
87 88 9.884636 TTAGTAATCCATCCGGTTATATCATTG 57.115 33.333 0.00 0.00 0.00 2.82
88 89 7.918076 AGTAATCCATCCGGTTATATCATTGT 58.082 34.615 0.00 0.00 0.00 2.71
89 90 8.041323 AGTAATCCATCCGGTTATATCATTGTC 58.959 37.037 0.00 0.00 0.00 3.18
90 91 4.816392 TCCATCCGGTTATATCATTGTCG 58.184 43.478 0.00 0.00 0.00 4.35
91 92 3.932710 CCATCCGGTTATATCATTGTCGG 59.067 47.826 0.00 0.00 37.61 4.79
92 93 4.322424 CCATCCGGTTATATCATTGTCGGA 60.322 45.833 0.00 0.00 46.91 4.55
93 94 4.940905 TCCGGTTATATCATTGTCGGAA 57.059 40.909 0.00 0.00 41.47 4.30
94 95 5.279255 TCCGGTTATATCATTGTCGGAAA 57.721 39.130 0.00 0.00 41.47 3.13
95 96 5.672503 TCCGGTTATATCATTGTCGGAAAA 58.327 37.500 0.00 0.00 41.47 2.29
96 97 6.114089 TCCGGTTATATCATTGTCGGAAAAA 58.886 36.000 0.00 0.00 41.47 1.94
97 98 6.768861 TCCGGTTATATCATTGTCGGAAAAAT 59.231 34.615 0.00 0.00 41.47 1.82
98 99 7.283580 TCCGGTTATATCATTGTCGGAAAAATT 59.716 33.333 0.00 0.00 41.47 1.82
99 100 7.378461 CCGGTTATATCATTGTCGGAAAAATTG 59.622 37.037 0.00 0.00 38.42 2.32
100 101 7.378461 CGGTTATATCATTGTCGGAAAAATTGG 59.622 37.037 0.00 0.00 0.00 3.16
101 102 8.194769 GGTTATATCATTGTCGGAAAAATTGGT 58.805 33.333 0.00 0.00 0.00 3.67
102 103 9.233232 GTTATATCATTGTCGGAAAAATTGGTC 57.767 33.333 0.00 0.00 0.00 4.02
103 104 4.153958 TCATTGTCGGAAAAATTGGTCG 57.846 40.909 0.00 0.00 0.00 4.79
104 105 3.815962 TCATTGTCGGAAAAATTGGTCGA 59.184 39.130 0.00 0.00 0.00 4.20
105 106 4.276183 TCATTGTCGGAAAAATTGGTCGAA 59.724 37.500 0.00 0.00 0.00 3.71
106 107 3.889196 TGTCGGAAAAATTGGTCGAAG 57.111 42.857 0.00 0.00 0.00 3.79
107 108 2.031508 TGTCGGAAAAATTGGTCGAAGC 60.032 45.455 0.00 0.00 0.00 3.86
108 109 2.031508 GTCGGAAAAATTGGTCGAAGCA 60.032 45.455 0.00 0.00 0.00 3.91
109 110 2.619177 TCGGAAAAATTGGTCGAAGCAA 59.381 40.909 0.00 0.00 40.12 3.91
110 111 2.724174 CGGAAAAATTGGTCGAAGCAAC 59.276 45.455 0.00 0.00 38.51 4.17
111 112 3.057019 GGAAAAATTGGTCGAAGCAACC 58.943 45.455 0.00 0.00 38.51 3.77
112 113 3.491792 GGAAAAATTGGTCGAAGCAACCA 60.492 43.478 0.00 0.00 44.98 3.67
113 114 4.306600 GAAAAATTGGTCGAAGCAACCAT 58.693 39.130 0.00 0.00 45.89 3.55
114 115 3.302365 AAATTGGTCGAAGCAACCATG 57.698 42.857 0.00 0.00 45.89 3.66
124 125 4.079446 CAACCATGCCACGAAGGT 57.921 55.556 0.00 0.00 40.61 3.50
125 126 1.875963 CAACCATGCCACGAAGGTC 59.124 57.895 0.00 0.00 40.61 3.85
126 127 0.888736 CAACCATGCCACGAAGGTCA 60.889 55.000 0.00 0.00 40.61 4.02
127 128 0.889186 AACCATGCCACGAAGGTCAC 60.889 55.000 0.00 0.00 40.61 3.67
128 129 2.040544 CCATGCCACGAAGGTCACC 61.041 63.158 0.00 0.00 40.61 4.02
129 130 2.047274 ATGCCACGAAGGTCACCG 60.047 61.111 0.00 0.00 40.61 4.94
130 131 4.980805 TGCCACGAAGGTCACCGC 62.981 66.667 0.00 0.00 40.61 5.68
134 135 4.595538 ACGAAGGTCACCGCGCAA 62.596 61.111 8.75 0.00 31.54 4.85
135 136 4.072088 CGAAGGTCACCGCGCAAC 62.072 66.667 8.75 0.00 0.00 4.17
136 137 2.970324 GAAGGTCACCGCGCAACA 60.970 61.111 8.75 0.00 0.00 3.33
137 138 2.515057 AAGGTCACCGCGCAACAA 60.515 55.556 8.75 0.00 0.00 2.83
138 139 2.711185 GAAGGTCACCGCGCAACAAC 62.711 60.000 8.75 0.00 0.00 3.32
139 140 4.322385 GGTCACCGCGCAACAACC 62.322 66.667 8.75 5.68 0.00 3.77
140 141 3.578272 GTCACCGCGCAACAACCA 61.578 61.111 8.75 0.00 0.00 3.67
141 142 2.824489 TCACCGCGCAACAACCAA 60.824 55.556 8.75 0.00 0.00 3.67
142 143 2.103143 CACCGCGCAACAACCAAA 59.897 55.556 8.75 0.00 0.00 3.28
143 144 1.299773 CACCGCGCAACAACCAAAT 60.300 52.632 8.75 0.00 0.00 2.32
144 145 0.039978 CACCGCGCAACAACCAAATA 60.040 50.000 8.75 0.00 0.00 1.40
145 146 0.669077 ACCGCGCAACAACCAAATAA 59.331 45.000 8.75 0.00 0.00 1.40
146 147 1.335506 ACCGCGCAACAACCAAATAAG 60.336 47.619 8.75 0.00 0.00 1.73
147 148 1.068885 CCGCGCAACAACCAAATAAGA 60.069 47.619 8.75 0.00 0.00 2.10
148 149 2.605823 CCGCGCAACAACCAAATAAGAA 60.606 45.455 8.75 0.00 0.00 2.52
149 150 2.403698 CGCGCAACAACCAAATAAGAAC 59.596 45.455 8.75 0.00 0.00 3.01
150 151 3.376540 GCGCAACAACCAAATAAGAACA 58.623 40.909 0.30 0.00 0.00 3.18
151 152 3.181575 GCGCAACAACCAAATAAGAACAC 59.818 43.478 0.30 0.00 0.00 3.32
152 153 4.355437 CGCAACAACCAAATAAGAACACA 58.645 39.130 0.00 0.00 0.00 3.72
153 154 4.800993 CGCAACAACCAAATAAGAACACAA 59.199 37.500 0.00 0.00 0.00 3.33
154 155 5.276161 CGCAACAACCAAATAAGAACACAAC 60.276 40.000 0.00 0.00 0.00 3.32
155 156 5.006261 GCAACAACCAAATAAGAACACAACC 59.994 40.000 0.00 0.00 0.00 3.77
156 157 5.923733 ACAACCAAATAAGAACACAACCA 57.076 34.783 0.00 0.00 0.00 3.67
157 158 5.656480 ACAACCAAATAAGAACACAACCAC 58.344 37.500 0.00 0.00 0.00 4.16
158 159 5.186021 ACAACCAAATAAGAACACAACCACA 59.814 36.000 0.00 0.00 0.00 4.17
159 160 5.923733 ACCAAATAAGAACACAACCACAA 57.076 34.783 0.00 0.00 0.00 3.33
160 161 5.656480 ACCAAATAAGAACACAACCACAAC 58.344 37.500 0.00 0.00 0.00 3.32
161 162 5.420739 ACCAAATAAGAACACAACCACAACT 59.579 36.000 0.00 0.00 0.00 3.16
162 163 5.977129 CCAAATAAGAACACAACCACAACTC 59.023 40.000 0.00 0.00 0.00 3.01
163 164 5.767816 AATAAGAACACAACCACAACTCC 57.232 39.130 0.00 0.00 0.00 3.85
164 165 1.663695 AGAACACAACCACAACTCCG 58.336 50.000 0.00 0.00 0.00 4.63
165 166 1.208535 AGAACACAACCACAACTCCGA 59.791 47.619 0.00 0.00 0.00 4.55
166 167 2.011222 GAACACAACCACAACTCCGAA 58.989 47.619 0.00 0.00 0.00 4.30
167 168 2.116827 ACACAACCACAACTCCGAAA 57.883 45.000 0.00 0.00 0.00 3.46
168 169 1.741145 ACACAACCACAACTCCGAAAC 59.259 47.619 0.00 0.00 0.00 2.78
169 170 1.740585 CACAACCACAACTCCGAAACA 59.259 47.619 0.00 0.00 0.00 2.83
170 171 2.014128 ACAACCACAACTCCGAAACAG 58.986 47.619 0.00 0.00 0.00 3.16
171 172 2.285083 CAACCACAACTCCGAAACAGA 58.715 47.619 0.00 0.00 0.00 3.41
172 173 2.240493 ACCACAACTCCGAAACAGAG 57.760 50.000 0.00 0.00 37.39 3.35
173 174 1.202651 ACCACAACTCCGAAACAGAGG 60.203 52.381 0.00 0.00 35.58 3.69
174 175 1.202651 CCACAACTCCGAAACAGAGGT 60.203 52.381 0.00 0.00 35.58 3.85
176 177 1.512926 CAACTCCGAAACAGAGGTGG 58.487 55.000 0.00 0.00 43.91 4.61
177 178 0.396811 AACTCCGAAACAGAGGTGGG 59.603 55.000 0.00 0.00 35.58 4.61
178 179 1.376037 CTCCGAAACAGAGGTGGGC 60.376 63.158 0.00 0.00 0.00 5.36
179 180 2.359975 CCGAAACAGAGGTGGGCC 60.360 66.667 0.00 0.00 0.00 5.80
180 181 2.359975 CGAAACAGAGGTGGGCCC 60.360 66.667 17.59 17.59 34.57 5.80
181 182 2.843545 GAAACAGAGGTGGGCCCA 59.156 61.111 24.45 24.45 34.66 5.36
182 183 1.303643 GAAACAGAGGTGGGCCCAG 60.304 63.158 29.55 16.56 34.66 4.45
183 184 1.774217 AAACAGAGGTGGGCCCAGA 60.774 57.895 29.55 0.00 34.66 3.86
184 185 1.783250 AAACAGAGGTGGGCCCAGAG 61.783 60.000 29.55 15.88 34.66 3.35
185 186 3.406200 CAGAGGTGGGCCCAGAGG 61.406 72.222 29.55 9.79 34.66 3.69
186 187 3.615811 AGAGGTGGGCCCAGAGGA 61.616 66.667 29.55 0.00 34.66 3.71
187 188 2.610859 GAGGTGGGCCCAGAGGAA 60.611 66.667 29.55 0.00 34.66 3.36
188 189 2.121506 AGGTGGGCCCAGAGGAAA 60.122 61.111 29.55 0.00 34.66 3.13
189 190 1.778383 AGGTGGGCCCAGAGGAAAA 60.778 57.895 29.55 0.00 34.66 2.29
190 191 1.155155 GGTGGGCCCAGAGGAAAAA 59.845 57.895 29.55 0.00 33.47 1.94
233 234 3.879885 CCACACCGACCAACCCCA 61.880 66.667 0.00 0.00 0.00 4.96
234 235 2.593436 CACACCGACCAACCCCAC 60.593 66.667 0.00 0.00 0.00 4.61
235 236 3.881104 ACACCGACCAACCCCACC 61.881 66.667 0.00 0.00 0.00 4.61
236 237 3.879885 CACCGACCAACCCCACCA 61.880 66.667 0.00 0.00 0.00 4.17
237 238 3.881104 ACCGACCAACCCCACCAC 61.881 66.667 0.00 0.00 0.00 4.16
238 239 3.566210 CCGACCAACCCCACCACT 61.566 66.667 0.00 0.00 0.00 4.00
239 240 2.218454 CCGACCAACCCCACCACTA 61.218 63.158 0.00 0.00 0.00 2.74
240 241 1.559065 CCGACCAACCCCACCACTAT 61.559 60.000 0.00 0.00 0.00 2.12
241 242 0.107848 CGACCAACCCCACCACTATC 60.108 60.000 0.00 0.00 0.00 2.08
242 243 0.988832 GACCAACCCCACCACTATCA 59.011 55.000 0.00 0.00 0.00 2.15
243 244 1.353022 GACCAACCCCACCACTATCAA 59.647 52.381 0.00 0.00 0.00 2.57
244 245 1.354368 ACCAACCCCACCACTATCAAG 59.646 52.381 0.00 0.00 0.00 3.02
245 246 1.633432 CCAACCCCACCACTATCAAGA 59.367 52.381 0.00 0.00 0.00 3.02
246 247 2.242196 CCAACCCCACCACTATCAAGAT 59.758 50.000 0.00 0.00 0.00 2.40
247 248 3.545703 CAACCCCACCACTATCAAGATC 58.454 50.000 0.00 0.00 0.00 2.75
248 249 3.136641 ACCCCACCACTATCAAGATCT 57.863 47.619 0.00 0.00 0.00 2.75
249 250 3.041946 ACCCCACCACTATCAAGATCTC 58.958 50.000 0.00 0.00 0.00 2.75
250 251 2.036475 CCCCACCACTATCAAGATCTCG 59.964 54.545 0.00 0.00 0.00 4.04
251 252 2.546795 CCCACCACTATCAAGATCTCGC 60.547 54.545 0.00 0.00 0.00 5.03
252 253 2.389059 CACCACTATCAAGATCTCGCG 58.611 52.381 0.00 0.00 0.00 5.87
253 254 1.338337 ACCACTATCAAGATCTCGCGG 59.662 52.381 6.13 0.00 0.00 6.46
254 255 1.336332 CCACTATCAAGATCTCGCGGG 60.336 57.143 6.13 1.01 0.00 6.13
255 256 0.315568 ACTATCAAGATCTCGCGGGC 59.684 55.000 6.13 0.00 0.00 6.13
256 257 0.389166 CTATCAAGATCTCGCGGGCC 60.389 60.000 6.13 0.00 0.00 5.80
257 258 1.112916 TATCAAGATCTCGCGGGCCA 61.113 55.000 6.13 0.00 0.00 5.36
258 259 1.971505 ATCAAGATCTCGCGGGCCAA 61.972 55.000 6.13 0.00 0.00 4.52
259 260 1.745115 CAAGATCTCGCGGGCCAAA 60.745 57.895 6.13 0.00 0.00 3.28
260 261 1.745489 AAGATCTCGCGGGCCAAAC 60.745 57.895 6.13 0.00 0.00 2.93
261 262 2.435938 GATCTCGCGGGCCAAACA 60.436 61.111 6.13 0.00 0.00 2.83
262 263 1.819632 GATCTCGCGGGCCAAACAT 60.820 57.895 6.13 0.00 0.00 2.71
263 264 2.051804 GATCTCGCGGGCCAAACATG 62.052 60.000 6.13 0.00 0.00 3.21
264 265 2.535485 ATCTCGCGGGCCAAACATGA 62.535 55.000 6.13 0.00 0.00 3.07
265 266 3.039202 CTCGCGGGCCAAACATGAC 62.039 63.158 6.13 0.00 0.00 3.06
266 267 4.114997 CGCGGGCCAAACATGACC 62.115 66.667 4.39 0.00 0.00 4.02
267 268 3.758931 GCGGGCCAAACATGACCC 61.759 66.667 4.39 0.98 39.12 4.46
269 270 2.282887 GGGCCAAACATGACCCGT 60.283 61.111 4.39 0.00 31.32 5.28
270 271 2.635443 GGGCCAAACATGACCCGTG 61.635 63.158 4.39 0.00 31.32 4.94
271 272 1.602323 GGCCAAACATGACCCGTGA 60.602 57.895 0.00 0.00 0.00 4.35
272 273 1.586154 GGCCAAACATGACCCGTGAG 61.586 60.000 0.00 0.00 0.00 3.51
273 274 0.605319 GCCAAACATGACCCGTGAGA 60.605 55.000 0.00 0.00 0.00 3.27
274 275 1.890876 CCAAACATGACCCGTGAGAA 58.109 50.000 0.00 0.00 0.00 2.87
275 276 1.806542 CCAAACATGACCCGTGAGAAG 59.193 52.381 0.00 0.00 0.00 2.85
276 277 2.549992 CCAAACATGACCCGTGAGAAGA 60.550 50.000 0.00 0.00 0.00 2.87
277 278 2.457366 AACATGACCCGTGAGAAGAC 57.543 50.000 0.00 0.00 0.00 3.01
278 279 0.608640 ACATGACCCGTGAGAAGACC 59.391 55.000 0.00 0.00 0.00 3.85
279 280 0.458543 CATGACCCGTGAGAAGACCG 60.459 60.000 0.00 0.00 0.00 4.79
280 281 2.126031 GACCCGTGAGAAGACCGC 60.126 66.667 0.00 0.00 0.00 5.68
281 282 2.915659 ACCCGTGAGAAGACCGCA 60.916 61.111 0.00 0.00 0.00 5.69
282 283 2.125912 CCCGTGAGAAGACCGCAG 60.126 66.667 0.00 0.00 0.00 5.18
283 284 2.811317 CCGTGAGAAGACCGCAGC 60.811 66.667 0.00 0.00 0.00 5.25
284 285 2.259818 CGTGAGAAGACCGCAGCT 59.740 61.111 0.00 0.00 0.00 4.24
285 286 1.803519 CGTGAGAAGACCGCAGCTC 60.804 63.158 0.00 0.00 0.00 4.09
286 287 1.446966 GTGAGAAGACCGCAGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
287 288 1.607756 TGAGAAGACCGCAGCTCCT 60.608 57.895 0.00 0.00 0.00 3.69
288 289 1.140804 GAGAAGACCGCAGCTCCTC 59.859 63.158 0.00 0.00 0.00 3.71
289 290 2.202676 GAAGACCGCAGCTCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
290 291 4.443266 AAGACCGCAGCTCCTCGC 62.443 66.667 0.00 0.00 39.57 5.03
299 300 4.863925 GCTCCTCGCTCTGTCGCC 62.864 72.222 0.00 0.00 35.14 5.54
300 301 4.200283 CTCCTCGCTCTGTCGCCC 62.200 72.222 0.00 0.00 0.00 6.13
302 303 4.803426 CCTCGCTCTGTCGCCCAC 62.803 72.222 0.00 0.00 0.00 4.61
303 304 4.803426 CTCGCTCTGTCGCCCACC 62.803 72.222 0.00 0.00 0.00 4.61
319 320 4.675029 CCGCCGTGGAGACCGTTT 62.675 66.667 0.00 0.00 42.00 3.60
320 321 2.663852 CGCCGTGGAGACCGTTTT 60.664 61.111 0.00 0.00 0.00 2.43
321 322 2.943653 GCCGTGGAGACCGTTTTG 59.056 61.111 0.00 0.00 0.00 2.44
322 323 1.595929 GCCGTGGAGACCGTTTTGA 60.596 57.895 0.00 0.00 0.00 2.69
323 324 1.161563 GCCGTGGAGACCGTTTTGAA 61.162 55.000 0.00 0.00 0.00 2.69
324 325 1.519408 CCGTGGAGACCGTTTTGAAT 58.481 50.000 0.00 0.00 0.00 2.57
325 326 2.690786 CCGTGGAGACCGTTTTGAATA 58.309 47.619 0.00 0.00 0.00 1.75
326 327 3.068560 CCGTGGAGACCGTTTTGAATAA 58.931 45.455 0.00 0.00 0.00 1.40
327 328 3.499157 CCGTGGAGACCGTTTTGAATAAA 59.501 43.478 0.00 0.00 0.00 1.40
328 329 4.460505 CGTGGAGACCGTTTTGAATAAAC 58.539 43.478 0.00 0.00 0.00 2.01
329 330 4.024725 CGTGGAGACCGTTTTGAATAAACA 60.025 41.667 0.00 0.00 0.00 2.83
330 331 5.209977 GTGGAGACCGTTTTGAATAAACAC 58.790 41.667 0.00 0.00 0.00 3.32
331 332 4.882427 TGGAGACCGTTTTGAATAAACACA 59.118 37.500 0.00 0.00 0.00 3.72
332 333 5.533154 TGGAGACCGTTTTGAATAAACACAT 59.467 36.000 0.00 0.00 0.00 3.21
333 334 6.039941 TGGAGACCGTTTTGAATAAACACATT 59.960 34.615 0.00 0.00 0.00 2.71
334 335 7.228906 TGGAGACCGTTTTGAATAAACACATTA 59.771 33.333 0.00 0.00 0.00 1.90
335 336 8.077386 GGAGACCGTTTTGAATAAACACATTAA 58.923 33.333 0.00 0.00 0.00 1.40
336 337 9.620660 GAGACCGTTTTGAATAAACACATTAAT 57.379 29.630 0.00 0.00 0.00 1.40
337 338 9.974980 AGACCGTTTTGAATAAACACATTAATT 57.025 25.926 0.00 0.00 0.00 1.40
348 349 6.619801 AAACACATTAATTATCTCTCCCGC 57.380 37.500 0.00 0.00 0.00 6.13
349 350 5.552870 ACACATTAATTATCTCTCCCGCT 57.447 39.130 0.00 0.00 0.00 5.52
350 351 5.300752 ACACATTAATTATCTCTCCCGCTG 58.699 41.667 0.00 0.00 0.00 5.18
351 352 4.153117 CACATTAATTATCTCTCCCGCTGC 59.847 45.833 0.00 0.00 0.00 5.25
352 353 4.040952 ACATTAATTATCTCTCCCGCTGCT 59.959 41.667 0.00 0.00 0.00 4.24
353 354 4.689612 TTAATTATCTCTCCCGCTGCTT 57.310 40.909 0.00 0.00 0.00 3.91
354 355 2.540265 ATTATCTCTCCCGCTGCTTG 57.460 50.000 0.00 0.00 0.00 4.01
355 356 1.195115 TTATCTCTCCCGCTGCTTGT 58.805 50.000 0.00 0.00 0.00 3.16
356 357 1.195115 TATCTCTCCCGCTGCTTGTT 58.805 50.000 0.00 0.00 0.00 2.83
357 358 0.392193 ATCTCTCCCGCTGCTTGTTG 60.392 55.000 0.00 0.00 0.00 3.33
358 359 1.302033 CTCTCCCGCTGCTTGTTGT 60.302 57.895 0.00 0.00 0.00 3.32
359 360 0.037326 CTCTCCCGCTGCTTGTTGTA 60.037 55.000 0.00 0.00 0.00 2.41
360 361 0.394938 TCTCCCGCTGCTTGTTGTAA 59.605 50.000 0.00 0.00 0.00 2.41
361 362 1.202710 TCTCCCGCTGCTTGTTGTAAA 60.203 47.619 0.00 0.00 0.00 2.01
362 363 1.606668 CTCCCGCTGCTTGTTGTAAAA 59.393 47.619 0.00 0.00 0.00 1.52
363 364 2.025155 TCCCGCTGCTTGTTGTAAAAA 58.975 42.857 0.00 0.00 0.00 1.94
393 394 4.292208 CGTTGCAACGCACGAGCA 62.292 61.111 35.89 9.96 46.06 4.26
394 395 2.252260 GTTGCAACGCACGAGCAT 59.748 55.556 14.90 0.00 38.71 3.79
395 396 1.495509 GTTGCAACGCACGAGCATA 59.504 52.632 14.90 5.07 38.71 3.14
396 397 0.096976 GTTGCAACGCACGAGCATAT 59.903 50.000 14.90 0.00 38.71 1.78
397 398 0.096802 TTGCAACGCACGAGCATATG 59.903 50.000 13.57 0.00 38.71 1.78
398 399 1.018752 TGCAACGCACGAGCATATGT 61.019 50.000 5.50 0.00 42.27 2.29
399 400 0.587242 GCAACGCACGAGCATATGTG 60.587 55.000 5.50 0.00 42.27 3.21
565 566 2.362717 CCGTTAAAGGCTGACCCAAAAA 59.637 45.455 0.00 0.00 36.11 1.94
566 567 3.377439 CGTTAAAGGCTGACCCAAAAAC 58.623 45.455 0.00 0.00 36.11 2.43
567 568 3.181485 CGTTAAAGGCTGACCCAAAAACA 60.181 43.478 0.00 0.00 36.11 2.83
568 569 4.500716 CGTTAAAGGCTGACCCAAAAACAT 60.501 41.667 0.00 0.00 36.11 2.71
569 570 3.473923 AAAGGCTGACCCAAAAACATG 57.526 42.857 0.00 0.00 36.11 3.21
570 571 2.380064 AGGCTGACCCAAAAACATGA 57.620 45.000 0.00 0.00 36.11 3.07
571 572 2.676748 AGGCTGACCCAAAAACATGAA 58.323 42.857 0.00 0.00 36.11 2.57
574 575 2.627699 GCTGACCCAAAAACATGAAGGA 59.372 45.455 0.00 0.00 0.00 3.36
576 577 3.230134 TGACCCAAAAACATGAAGGAGG 58.770 45.455 0.00 0.00 0.00 4.30
694 731 1.130561 GAGCCAAACCGCAAGTATCAC 59.869 52.381 0.00 0.00 0.00 3.06
829 866 4.660303 TCACTGGCCAATAATCACCTATCT 59.340 41.667 7.01 0.00 0.00 1.98
843 880 1.470098 CCTATCTGTTTGCAGCCACAC 59.530 52.381 0.00 0.00 42.29 3.82
856 893 1.021390 GCCACACATCCCGTCAGAAG 61.021 60.000 0.00 0.00 0.00 2.85
925 962 2.507102 CGCTACGCAGGTGTGGAG 60.507 66.667 0.00 0.00 39.46 3.86
1076 1113 4.143333 TCTTCTAGGCCGCGGCAC 62.143 66.667 46.88 35.51 44.11 5.01
1149 1186 2.992124 TCAAGGTGTTCGACAAGGAA 57.008 45.000 0.00 0.00 0.00 3.36
1184 1221 2.343758 CACGGTGGACCAGGTGAG 59.656 66.667 17.04 0.89 31.58 3.51
1204 1241 2.571757 GCGAGGTGGACGTGATGA 59.428 61.111 0.00 0.00 0.00 2.92
1369 1406 0.390340 CCGCTACTTTCAGCAGCTGA 60.390 55.000 21.85 21.85 41.88 4.26
1392 1429 2.125512 GCCGTCGAGTTCTGCCAT 60.126 61.111 0.00 0.00 0.00 4.40
1440 1477 1.990614 GCCCGAGAACCTCCTCCTT 60.991 63.158 0.00 0.00 0.00 3.36
1618 1655 5.438117 GTGTTAACTAGCTTGTCCGTTTTC 58.562 41.667 7.22 0.00 0.00 2.29
1731 1768 1.741770 GTGCGGCGTGATCCTCTTT 60.742 57.895 9.37 0.00 0.00 2.52
1789 1826 0.737715 CCTCGTGCTCCTGTACAAGC 60.738 60.000 11.84 11.84 39.02 4.01
1863 1900 4.729918 CTCCTTGCCCGGCTGCTT 62.730 66.667 11.61 0.00 0.00 3.91
1919 1956 4.489771 CATGGCCCGGACCTGGTC 62.490 72.222 18.65 18.65 0.00 4.02
1943 1980 1.204113 AAAGACTCCTGCCCCCTCAG 61.204 60.000 0.00 0.00 0.00 3.35
1962 1999 2.741092 GACAAGCCCCTCGACACA 59.259 61.111 0.00 0.00 0.00 3.72
1984 2021 1.301479 GAAACGGCGGTGTTCCTCT 60.301 57.895 13.24 0.00 0.00 3.69
2081 2118 2.024868 CGTCGTCGCCAACCATCAA 61.025 57.895 0.00 0.00 0.00 2.57
2083 2120 1.669760 TCGTCGCCAACCATCAACC 60.670 57.895 0.00 0.00 0.00 3.77
2561 2599 0.247185 CCAACCGCTTGGCATTTCAT 59.753 50.000 0.00 0.00 40.79 2.57
2572 2610 2.465774 CATTTCATGCGTGGGACGA 58.534 52.632 5.98 0.00 46.05 4.20
2573 2611 0.374758 CATTTCATGCGTGGGACGAG 59.625 55.000 5.98 0.00 46.05 4.18
2574 2612 0.744414 ATTTCATGCGTGGGACGAGG 60.744 55.000 5.98 0.00 46.05 4.63
2575 2613 1.822114 TTTCATGCGTGGGACGAGGA 61.822 55.000 5.98 0.00 46.05 3.71
2576 2614 1.613317 TTCATGCGTGGGACGAGGAT 61.613 55.000 5.98 0.00 46.05 3.24
2577 2615 1.592669 CATGCGTGGGACGAGGATC 60.593 63.158 0.00 0.00 46.05 3.36
2578 2616 2.797278 ATGCGTGGGACGAGGATCC 61.797 63.158 2.48 2.48 46.05 3.36
2579 2617 3.148279 GCGTGGGACGAGGATCCT 61.148 66.667 16.13 16.13 46.05 3.24
2580 2618 2.722201 GCGTGGGACGAGGATCCTT 61.722 63.158 17.42 0.00 46.05 3.36
2581 2619 1.898154 CGTGGGACGAGGATCCTTT 59.102 57.895 17.42 6.07 46.05 3.11
2582 2620 0.460284 CGTGGGACGAGGATCCTTTG 60.460 60.000 17.42 14.30 46.05 2.77
2583 2621 0.744771 GTGGGACGAGGATCCTTTGC 60.745 60.000 17.42 11.35 38.95 3.68
2584 2622 0.909610 TGGGACGAGGATCCTTTGCT 60.910 55.000 17.42 3.05 38.95 3.91
2585 2623 0.253327 GGGACGAGGATCCTTTGCTT 59.747 55.000 17.42 0.00 38.95 3.91
2586 2624 1.657822 GGACGAGGATCCTTTGCTTC 58.342 55.000 17.42 6.31 35.68 3.86
2587 2625 1.657822 GACGAGGATCCTTTGCTTCC 58.342 55.000 17.42 0.00 0.00 3.46
2588 2626 0.108138 ACGAGGATCCTTTGCTTCCG 60.108 55.000 17.42 15.09 34.61 4.30
2589 2627 1.432270 CGAGGATCCTTTGCTTCCGC 61.432 60.000 17.42 0.00 34.61 5.54
2675 2713 2.968655 GGGTTTTCGAAAACGTGAATCG 59.031 45.455 35.01 10.56 47.00 3.34
2692 2730 2.968206 GGTACAGAACCGGAGCGT 59.032 61.111 9.46 1.64 38.88 5.07
2721 2760 5.163499 GCTGTTCTGCACTACTATAGGAACT 60.163 44.000 4.43 0.00 46.37 3.01
2733 2772 5.198965 ACTATAGGAACTGCGGAGAAACTA 58.801 41.667 12.26 9.61 41.52 2.24
2734 2773 5.834204 ACTATAGGAACTGCGGAGAAACTAT 59.166 40.000 12.26 15.67 41.52 2.12
2735 2774 3.983044 AGGAACTGCGGAGAAACTATT 57.017 42.857 12.26 0.00 37.18 1.73
2736 2775 4.287766 AGGAACTGCGGAGAAACTATTT 57.712 40.909 12.26 0.00 37.18 1.40
2737 2776 4.003648 AGGAACTGCGGAGAAACTATTTG 58.996 43.478 12.26 0.00 37.18 2.32
2738 2777 4.000988 GGAACTGCGGAGAAACTATTTGA 58.999 43.478 12.26 0.00 0.00 2.69
2741 2780 6.385649 AACTGCGGAGAAACTATTTGAAAA 57.614 33.333 12.26 0.00 0.00 2.29
2761 2800 1.792006 AAAAGCGTGGTTAGGTCTCG 58.208 50.000 0.00 0.00 0.00 4.04
2762 2801 0.037605 AAAGCGTGGTTAGGTCTCGG 60.038 55.000 0.00 0.00 0.00 4.63
2764 2803 1.153881 GCGTGGTTAGGTCTCGGTC 60.154 63.158 0.00 0.00 0.00 4.79
2766 2805 1.509923 GTGGTTAGGTCTCGGTCGG 59.490 63.158 0.00 0.00 0.00 4.79
2768 2807 2.050934 GGTTAGGTCTCGGTCGGCT 61.051 63.158 0.00 0.00 0.00 5.52
2769 2808 1.432657 GTTAGGTCTCGGTCGGCTC 59.567 63.158 0.00 0.00 0.00 4.70
2782 2829 3.078837 GGTCGGCTCAGATTTAACCAAA 58.921 45.455 0.00 0.00 0.00 3.28
2877 3033 6.246420 AGATCAAACAAATATAGCATCGCC 57.754 37.500 0.00 0.00 0.00 5.54
2878 3034 6.000219 AGATCAAACAAATATAGCATCGCCT 59.000 36.000 0.00 0.00 0.00 5.52
2879 3035 5.422666 TCAAACAAATATAGCATCGCCTG 57.577 39.130 0.00 0.00 0.00 4.85
2882 3038 6.094742 TCAAACAAATATAGCATCGCCTGAAA 59.905 34.615 0.00 0.00 0.00 2.69
2883 3039 6.639632 AACAAATATAGCATCGCCTGAAAT 57.360 33.333 0.00 0.00 0.00 2.17
2884 3040 7.744087 AACAAATATAGCATCGCCTGAAATA 57.256 32.000 0.00 0.00 0.00 1.40
2885 3041 7.928307 ACAAATATAGCATCGCCTGAAATAT 57.072 32.000 0.00 0.00 0.00 1.28
2887 3043 9.448438 ACAAATATAGCATCGCCTGAAATATAA 57.552 29.630 0.00 0.00 0.00 0.98
2896 3052 7.463383 GCATCGCCTGAAATATAATAAGTCTCG 60.463 40.741 0.00 0.00 0.00 4.04
2897 3053 6.387465 TCGCCTGAAATATAATAAGTCTCGG 58.613 40.000 0.00 0.00 0.00 4.63
2912 3070 3.321111 AGTCTCGGACTTAGCAAAACTGA 59.679 43.478 1.23 0.00 40.28 3.41
2938 3096 2.301577 AAGAAGCAGCTAAGCTACGG 57.698 50.000 0.00 0.00 45.89 4.02
2980 3138 0.532573 TCCTTGTGAGCTGTCGGATC 59.467 55.000 0.00 0.00 0.00 3.36
2981 3139 0.803768 CCTTGTGAGCTGTCGGATCG 60.804 60.000 0.00 0.00 32.20 3.69
2982 3140 1.416813 CTTGTGAGCTGTCGGATCGC 61.417 60.000 3.46 3.46 40.78 4.58
2983 3141 1.877576 TTGTGAGCTGTCGGATCGCT 61.878 55.000 11.52 4.03 40.96 4.93
2986 3144 3.531283 AGCTGTCGGATCGCTCAT 58.469 55.556 0.00 0.00 0.00 2.90
2987 3145 1.361993 AGCTGTCGGATCGCTCATC 59.638 57.895 0.00 0.00 0.00 2.92
2988 3146 1.106351 AGCTGTCGGATCGCTCATCT 61.106 55.000 0.00 0.00 0.00 2.90
2996 3154 1.043816 GATCGCTCATCTTCCTCCCA 58.956 55.000 0.00 0.00 0.00 4.37
3001 3159 1.688197 GCTCATCTTCCTCCCAGAGAG 59.312 57.143 0.00 0.00 42.83 3.20
3012 3170 2.366916 CTCCCAGAGAGCAACGGATTAT 59.633 50.000 0.00 0.00 35.31 1.28
3013 3171 2.103094 TCCCAGAGAGCAACGGATTATG 59.897 50.000 0.00 0.00 0.00 1.90
3014 3172 2.158900 CCCAGAGAGCAACGGATTATGT 60.159 50.000 0.00 0.00 0.00 2.29
3017 3175 3.801050 CAGAGAGCAACGGATTATGTCTG 59.199 47.826 0.00 0.00 39.25 3.51
3019 3177 2.158900 AGAGCAACGGATTATGTCTGGG 60.159 50.000 0.00 0.00 37.54 4.45
3022 3180 2.420129 GCAACGGATTATGTCTGGGACT 60.420 50.000 0.00 0.00 37.54 3.85
3042 3201 3.268330 CTGAGCTAGCTTGAGCAATGAA 58.732 45.455 20.42 0.00 45.43 2.57
3087 3246 7.873719 TTGTAAGAAGGAATCACAACTTCAA 57.126 32.000 0.00 0.00 42.24 2.69
3090 3249 8.405531 TGTAAGAAGGAATCACAACTTCAAAAG 58.594 33.333 0.00 0.00 42.24 2.27
3102 3261 5.423931 ACAACTTCAAAAGGGGTGTTGTTAT 59.576 36.000 0.00 0.00 43.27 1.89
3114 3273 3.211865 GTGTTGTTATTAGGGCTAGGGC 58.788 50.000 0.00 0.00 37.82 5.19
3153 3312 0.889994 TGCATGTCTTCACATTGCCC 59.110 50.000 0.00 0.00 40.66 5.36
3162 3321 5.948758 TGTCTTCACATTGCCCATATTGTTA 59.051 36.000 0.00 0.00 0.00 2.41
3170 3329 6.041979 ACATTGCCCATATTGTTATTCTTCCC 59.958 38.462 0.00 0.00 0.00 3.97
3187 3346 1.373246 CCCGAACGCGACCTAAACA 60.373 57.895 15.93 0.00 40.82 2.83
3198 3357 5.467735 ACGCGACCTAAACAATTTTTACTCT 59.532 36.000 15.93 0.00 0.00 3.24
3210 3369 3.782656 TTTTACTCTTCTCCACCCACC 57.217 47.619 0.00 0.00 0.00 4.61
3221 3380 3.264845 ACCCACCTTCGGCCCAAT 61.265 61.111 0.00 0.00 0.00 3.16
3225 3384 1.032114 CCACCTTCGGCCCAATCTTC 61.032 60.000 0.00 0.00 0.00 2.87
3278 3437 3.834799 CACGGTCCGCCCTACTCC 61.835 72.222 12.28 0.00 0.00 3.85
3321 3480 2.377531 TCCCTCTATACCTGCCACGATA 59.622 50.000 0.00 0.00 0.00 2.92
3323 3482 3.131223 CCCTCTATACCTGCCACGATATG 59.869 52.174 0.00 0.00 0.00 1.78
3340 3499 1.816863 ATGTGTCGCCGTCAACCTCT 61.817 55.000 0.00 0.00 0.00 3.69
3366 3525 1.081509 CCCCGCACACAAACAATCG 60.082 57.895 0.00 0.00 0.00 3.34
3376 3535 4.214119 CACACAAACAATCGAACCTCTGAT 59.786 41.667 0.00 0.00 0.00 2.90
3377 3536 4.821805 ACACAAACAATCGAACCTCTGATT 59.178 37.500 0.00 0.00 35.26 2.57
3380 3539 2.893637 ACAATCGAACCTCTGATTCGG 58.106 47.619 12.01 0.00 46.96 4.30
3391 3550 1.769098 CTGATTCGGCTCCACATGCG 61.769 60.000 0.00 0.00 0.00 4.73
3393 3552 0.882042 GATTCGGCTCCACATGCGAT 60.882 55.000 0.00 0.00 0.00 4.58
3410 3569 0.461870 GATGCCTGTGCCGTGTCATA 60.462 55.000 0.00 0.00 36.33 2.15
3421 3580 0.105593 CGTGTCATAGCTGGCTCCAT 59.894 55.000 0.00 0.00 0.00 3.41
3426 3585 2.896685 GTCATAGCTGGCTCCATCTAGT 59.103 50.000 0.00 0.00 29.78 2.57
3429 3588 0.179936 AGCTGGCTCCATCTAGTTGC 59.820 55.000 0.00 0.00 0.00 4.17
3438 3609 0.872021 CATCTAGTTGCCGGCTCGAC 60.872 60.000 29.70 22.20 0.00 4.20
3459 3630 1.005748 CGCACCTTGCTCTCACTCA 60.006 57.895 0.00 0.00 42.25 3.41
3464 3635 2.164422 CACCTTGCTCTCACTCATCGTA 59.836 50.000 0.00 0.00 0.00 3.43
3467 3638 1.463674 TGCTCTCACTCATCGTAGCA 58.536 50.000 0.00 0.00 37.62 3.49
3471 3642 3.489908 GCTCTCACTCATCGTAGCATTCA 60.490 47.826 0.00 0.00 0.00 2.57
3487 3658 1.186200 TTCATGTCTCGGTCTCTGGG 58.814 55.000 0.00 0.00 0.00 4.45
3499 3670 1.618837 GTCTCTGGGCTACACACAAGA 59.381 52.381 0.00 0.00 0.00 3.02
3507 3678 4.892934 TGGGCTACACACAAGAATCTTTTT 59.107 37.500 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.308047 TTAGCGCATAACCAGGCATG 58.692 50.000 11.47 0.00 0.00 4.06
1 2 2.276732 ATTAGCGCATAACCAGGCAT 57.723 45.000 11.47 0.00 0.00 4.40
2 3 2.051334 AATTAGCGCATAACCAGGCA 57.949 45.000 11.47 0.00 0.00 4.75
3 4 3.670627 GCATAATTAGCGCATAACCAGGC 60.671 47.826 11.47 6.66 0.00 4.85
5 6 6.480524 TTAGCATAATTAGCGCATAACCAG 57.519 37.500 11.47 0.00 37.01 4.00
6 7 6.652900 TCATTAGCATAATTAGCGCATAACCA 59.347 34.615 11.47 0.00 37.01 3.67
7 8 7.072177 TCATTAGCATAATTAGCGCATAACC 57.928 36.000 11.47 0.00 37.01 2.85
8 9 8.840867 GTTTCATTAGCATAATTAGCGCATAAC 58.159 33.333 11.47 0.00 37.01 1.89
9 10 8.563732 TGTTTCATTAGCATAATTAGCGCATAA 58.436 29.630 11.47 5.95 37.01 1.90
10 11 8.093659 TGTTTCATTAGCATAATTAGCGCATA 57.906 30.769 11.47 0.00 37.01 3.14
11 12 6.969366 TGTTTCATTAGCATAATTAGCGCAT 58.031 32.000 11.47 0.00 37.01 4.73
12 13 6.370433 TGTTTCATTAGCATAATTAGCGCA 57.630 33.333 11.47 0.00 37.01 6.09
13 14 7.591057 TCAATGTTTCATTAGCATAATTAGCGC 59.409 33.333 0.00 0.00 37.01 5.92
14 15 9.449550 TTCAATGTTTCATTAGCATAATTAGCG 57.550 29.630 0.00 0.00 37.01 4.26
32 33 8.658609 GCAGCACATAAATTATGTTTCAATGTT 58.341 29.630 15.30 0.12 46.69 2.71
33 34 7.818446 TGCAGCACATAAATTATGTTTCAATGT 59.182 29.630 15.30 0.00 46.69 2.71
34 35 8.187354 TGCAGCACATAAATTATGTTTCAATG 57.813 30.769 15.30 10.70 46.69 2.82
35 36 8.774890 TTGCAGCACATAAATTATGTTTCAAT 57.225 26.923 15.30 0.00 46.69 2.57
36 37 8.774890 ATTGCAGCACATAAATTATGTTTCAA 57.225 26.923 15.30 15.12 46.69 2.69
37 38 8.774890 AATTGCAGCACATAAATTATGTTTCA 57.225 26.923 15.30 8.52 46.69 2.69
39 40 9.874205 ACTAATTGCAGCACATAAATTATGTTT 57.126 25.926 15.30 8.58 46.69 2.83
45 46 8.694540 TGGATTACTAATTGCAGCACATAAATT 58.305 29.630 0.00 0.00 0.00 1.82
46 47 8.236585 TGGATTACTAATTGCAGCACATAAAT 57.763 30.769 0.00 0.00 0.00 1.40
47 48 7.637631 TGGATTACTAATTGCAGCACATAAA 57.362 32.000 0.00 0.00 0.00 1.40
48 49 7.040478 GGATGGATTACTAATTGCAGCACATAA 60.040 37.037 0.00 0.00 0.00 1.90
49 50 6.430925 GGATGGATTACTAATTGCAGCACATA 59.569 38.462 0.00 0.00 0.00 2.29
50 51 5.242393 GGATGGATTACTAATTGCAGCACAT 59.758 40.000 0.00 0.00 0.00 3.21
51 52 4.580167 GGATGGATTACTAATTGCAGCACA 59.420 41.667 0.00 0.00 0.00 4.57
52 53 4.319766 CGGATGGATTACTAATTGCAGCAC 60.320 45.833 0.00 0.00 0.00 4.40
53 54 3.814842 CGGATGGATTACTAATTGCAGCA 59.185 43.478 0.00 0.00 0.00 4.41
54 55 3.189287 CCGGATGGATTACTAATTGCAGC 59.811 47.826 0.00 0.00 37.49 5.25
55 56 4.389374 ACCGGATGGATTACTAATTGCAG 58.611 43.478 9.46 0.00 39.21 4.41
56 57 4.431416 ACCGGATGGATTACTAATTGCA 57.569 40.909 9.46 0.00 39.21 4.08
57 58 8.732746 ATATAACCGGATGGATTACTAATTGC 57.267 34.615 9.46 0.00 39.21 3.56
58 59 9.884636 TGATATAACCGGATGGATTACTAATTG 57.115 33.333 9.46 0.00 39.21 2.32
61 62 9.884636 CAATGATATAACCGGATGGATTACTAA 57.115 33.333 9.46 0.00 39.21 2.24
62 63 9.042450 ACAATGATATAACCGGATGGATTACTA 57.958 33.333 9.46 0.00 39.21 1.82
63 64 7.918076 ACAATGATATAACCGGATGGATTACT 58.082 34.615 9.46 0.00 39.21 2.24
64 65 7.010183 CGACAATGATATAACCGGATGGATTAC 59.990 40.741 9.46 0.00 39.21 1.89
65 66 7.039270 CGACAATGATATAACCGGATGGATTA 58.961 38.462 9.46 0.00 39.21 1.75
66 67 5.874810 CGACAATGATATAACCGGATGGATT 59.125 40.000 9.46 0.00 39.21 3.01
67 68 5.419542 CGACAATGATATAACCGGATGGAT 58.580 41.667 9.46 0.00 39.21 3.41
68 69 4.322424 CCGACAATGATATAACCGGATGGA 60.322 45.833 9.46 0.00 37.87 3.41
69 70 3.932710 CCGACAATGATATAACCGGATGG 59.067 47.826 9.46 0.00 37.87 3.51
70 71 4.816392 TCCGACAATGATATAACCGGATG 58.184 43.478 9.46 0.00 39.43 3.51
71 72 5.477607 TTCCGACAATGATATAACCGGAT 57.522 39.130 9.46 0.00 43.06 4.18
72 73 4.940905 TTCCGACAATGATATAACCGGA 57.059 40.909 9.46 0.00 42.09 5.14
73 74 5.994887 TTTTCCGACAATGATATAACCGG 57.005 39.130 0.00 0.00 37.08 5.28
74 75 7.378461 CCAATTTTTCCGACAATGATATAACCG 59.622 37.037 0.00 0.00 0.00 4.44
75 76 8.194769 ACCAATTTTTCCGACAATGATATAACC 58.805 33.333 0.00 0.00 0.00 2.85
76 77 9.233232 GACCAATTTTTCCGACAATGATATAAC 57.767 33.333 0.00 0.00 0.00 1.89
77 78 8.126074 CGACCAATTTTTCCGACAATGATATAA 58.874 33.333 0.00 0.00 0.00 0.98
78 79 7.496263 TCGACCAATTTTTCCGACAATGATATA 59.504 33.333 0.00 0.00 0.00 0.86
79 80 6.317642 TCGACCAATTTTTCCGACAATGATAT 59.682 34.615 0.00 0.00 0.00 1.63
80 81 5.644206 TCGACCAATTTTTCCGACAATGATA 59.356 36.000 0.00 0.00 0.00 2.15
81 82 4.457603 TCGACCAATTTTTCCGACAATGAT 59.542 37.500 0.00 0.00 0.00 2.45
82 83 3.815962 TCGACCAATTTTTCCGACAATGA 59.184 39.130 0.00 0.00 0.00 2.57
83 84 4.153958 TCGACCAATTTTTCCGACAATG 57.846 40.909 0.00 0.00 0.00 2.82
84 85 4.794169 CTTCGACCAATTTTTCCGACAAT 58.206 39.130 0.00 0.00 0.00 2.71
85 86 3.549221 GCTTCGACCAATTTTTCCGACAA 60.549 43.478 0.00 0.00 0.00 3.18
86 87 2.031508 GCTTCGACCAATTTTTCCGACA 60.032 45.455 0.00 0.00 0.00 4.35
87 88 2.031508 TGCTTCGACCAATTTTTCCGAC 60.032 45.455 0.00 0.00 0.00 4.79
88 89 2.222886 TGCTTCGACCAATTTTTCCGA 58.777 42.857 0.00 0.00 0.00 4.55
89 90 2.697431 TGCTTCGACCAATTTTTCCG 57.303 45.000 0.00 0.00 0.00 4.30
90 91 3.057019 GGTTGCTTCGACCAATTTTTCC 58.943 45.455 1.52 0.00 37.82 3.13
91 92 3.712187 TGGTTGCTTCGACCAATTTTTC 58.288 40.909 3.53 0.00 44.12 2.29
92 93 3.810310 TGGTTGCTTCGACCAATTTTT 57.190 38.095 3.53 0.00 44.12 1.94
107 108 0.888736 TGACCTTCGTGGCATGGTTG 60.889 55.000 6.90 0.00 40.22 3.77
108 109 0.889186 GTGACCTTCGTGGCATGGTT 60.889 55.000 6.90 0.00 40.22 3.67
109 110 1.302511 GTGACCTTCGTGGCATGGT 60.303 57.895 6.90 5.54 40.22 3.55
110 111 2.040544 GGTGACCTTCGTGGCATGG 61.041 63.158 6.90 2.21 40.22 3.66
111 112 2.390599 CGGTGACCTTCGTGGCATG 61.391 63.158 0.00 0.00 40.22 4.06
112 113 2.047274 CGGTGACCTTCGTGGCAT 60.047 61.111 0.00 0.00 40.22 4.40
113 114 4.980805 GCGGTGACCTTCGTGGCA 62.981 66.667 0.00 0.00 40.22 4.92
117 118 4.595538 TTGCGCGGTGACCTTCGT 62.596 61.111 8.83 0.00 0.00 3.85
118 119 4.072088 GTTGCGCGGTGACCTTCG 62.072 66.667 8.83 4.34 0.00 3.79
119 120 2.539338 TTGTTGCGCGGTGACCTTC 61.539 57.895 8.83 0.00 0.00 3.46
120 121 2.515057 TTGTTGCGCGGTGACCTT 60.515 55.556 8.83 0.00 0.00 3.50
121 122 3.276846 GTTGTTGCGCGGTGACCT 61.277 61.111 8.83 0.00 0.00 3.85
122 123 4.322385 GGTTGTTGCGCGGTGACC 62.322 66.667 8.83 4.89 0.00 4.02
123 124 2.600122 TTTGGTTGTTGCGCGGTGAC 62.600 55.000 8.83 0.00 0.00 3.67
124 125 1.729470 ATTTGGTTGTTGCGCGGTGA 61.729 50.000 8.83 0.00 0.00 4.02
125 126 0.039978 TATTTGGTTGTTGCGCGGTG 60.040 50.000 8.83 0.00 0.00 4.94
126 127 0.669077 TTATTTGGTTGTTGCGCGGT 59.331 45.000 8.83 0.00 0.00 5.68
127 128 1.068885 TCTTATTTGGTTGTTGCGCGG 60.069 47.619 8.83 0.00 0.00 6.46
128 129 2.323939 TCTTATTTGGTTGTTGCGCG 57.676 45.000 0.00 0.00 0.00 6.86
129 130 3.181575 GTGTTCTTATTTGGTTGTTGCGC 59.818 43.478 0.00 0.00 0.00 6.09
130 131 4.355437 TGTGTTCTTATTTGGTTGTTGCG 58.645 39.130 0.00 0.00 0.00 4.85
131 132 5.006261 GGTTGTGTTCTTATTTGGTTGTTGC 59.994 40.000 0.00 0.00 0.00 4.17
132 133 6.035542 GTGGTTGTGTTCTTATTTGGTTGTTG 59.964 38.462 0.00 0.00 0.00 3.33
133 134 6.103330 GTGGTTGTGTTCTTATTTGGTTGTT 58.897 36.000 0.00 0.00 0.00 2.83
134 135 5.186021 TGTGGTTGTGTTCTTATTTGGTTGT 59.814 36.000 0.00 0.00 0.00 3.32
135 136 5.655488 TGTGGTTGTGTTCTTATTTGGTTG 58.345 37.500 0.00 0.00 0.00 3.77
136 137 5.923733 TGTGGTTGTGTTCTTATTTGGTT 57.076 34.783 0.00 0.00 0.00 3.67
137 138 5.420739 AGTTGTGGTTGTGTTCTTATTTGGT 59.579 36.000 0.00 0.00 0.00 3.67
138 139 5.901552 AGTTGTGGTTGTGTTCTTATTTGG 58.098 37.500 0.00 0.00 0.00 3.28
139 140 5.977129 GGAGTTGTGGTTGTGTTCTTATTTG 59.023 40.000 0.00 0.00 0.00 2.32
140 141 5.220970 CGGAGTTGTGGTTGTGTTCTTATTT 60.221 40.000 0.00 0.00 0.00 1.40
141 142 4.274950 CGGAGTTGTGGTTGTGTTCTTATT 59.725 41.667 0.00 0.00 0.00 1.40
142 143 3.813166 CGGAGTTGTGGTTGTGTTCTTAT 59.187 43.478 0.00 0.00 0.00 1.73
143 144 3.118702 TCGGAGTTGTGGTTGTGTTCTTA 60.119 43.478 0.00 0.00 0.00 2.10
144 145 2.014128 CGGAGTTGTGGTTGTGTTCTT 58.986 47.619 0.00 0.00 0.00 2.52
145 146 1.208535 TCGGAGTTGTGGTTGTGTTCT 59.791 47.619 0.00 0.00 0.00 3.01
146 147 1.658994 TCGGAGTTGTGGTTGTGTTC 58.341 50.000 0.00 0.00 0.00 3.18
147 148 2.116827 TTCGGAGTTGTGGTTGTGTT 57.883 45.000 0.00 0.00 0.00 3.32
148 149 1.741145 GTTTCGGAGTTGTGGTTGTGT 59.259 47.619 0.00 0.00 0.00 3.72
149 150 1.740585 TGTTTCGGAGTTGTGGTTGTG 59.259 47.619 0.00 0.00 0.00 3.33
150 151 2.014128 CTGTTTCGGAGTTGTGGTTGT 58.986 47.619 0.00 0.00 0.00 3.32
151 152 2.285083 TCTGTTTCGGAGTTGTGGTTG 58.715 47.619 0.00 0.00 0.00 3.77
152 153 2.561569 CTCTGTTTCGGAGTTGTGGTT 58.438 47.619 0.00 0.00 32.64 3.67
153 154 1.202651 CCTCTGTTTCGGAGTTGTGGT 60.203 52.381 5.12 0.00 35.27 4.16
154 155 1.202651 ACCTCTGTTTCGGAGTTGTGG 60.203 52.381 5.12 0.00 35.27 4.17
155 156 1.867233 CACCTCTGTTTCGGAGTTGTG 59.133 52.381 5.12 3.66 35.27 3.33
156 157 1.202651 CCACCTCTGTTTCGGAGTTGT 60.203 52.381 5.12 0.00 35.27 3.32
157 158 1.512926 CCACCTCTGTTTCGGAGTTG 58.487 55.000 5.12 1.41 35.27 3.16
158 159 0.396811 CCCACCTCTGTTTCGGAGTT 59.603 55.000 5.12 0.00 35.27 3.01
159 160 2.058675 CCCACCTCTGTTTCGGAGT 58.941 57.895 5.12 0.00 35.27 3.85
160 161 1.376037 GCCCACCTCTGTTTCGGAG 60.376 63.158 0.00 0.00 36.69 4.63
161 162 2.747686 GCCCACCTCTGTTTCGGA 59.252 61.111 0.00 0.00 0.00 4.55
162 163 2.359975 GGCCCACCTCTGTTTCGG 60.360 66.667 0.00 0.00 0.00 4.30
163 164 2.359975 GGGCCCACCTCTGTTTCG 60.360 66.667 19.95 0.00 35.85 3.46
164 165 1.303643 CTGGGCCCACCTCTGTTTC 60.304 63.158 24.45 0.00 41.11 2.78
165 166 1.774217 TCTGGGCCCACCTCTGTTT 60.774 57.895 24.45 0.00 41.11 2.83
166 167 2.121963 TCTGGGCCCACCTCTGTT 60.122 61.111 24.45 0.00 41.11 3.16
167 168 2.608988 CTCTGGGCCCACCTCTGT 60.609 66.667 24.45 0.00 41.11 3.41
168 169 3.406200 CCTCTGGGCCCACCTCTG 61.406 72.222 24.45 11.69 41.11 3.35
169 170 2.713111 TTTCCTCTGGGCCCACCTCT 62.713 60.000 24.45 0.00 41.11 3.69
170 171 1.789576 TTTTCCTCTGGGCCCACCTC 61.790 60.000 24.45 0.00 41.11 3.85
171 172 1.368268 TTTTTCCTCTGGGCCCACCT 61.368 55.000 24.45 0.00 41.11 4.00
172 173 1.155155 TTTTTCCTCTGGGCCCACC 59.845 57.895 24.45 0.00 40.81 4.61
173 174 4.943373 TTTTTCCTCTGGGCCCAC 57.057 55.556 24.45 0.00 0.00 4.61
216 217 3.879885 TGGGGTTGGTCGGTGTGG 61.880 66.667 0.00 0.00 0.00 4.17
217 218 2.593436 GTGGGGTTGGTCGGTGTG 60.593 66.667 0.00 0.00 0.00 3.82
218 219 3.881104 GGTGGGGTTGGTCGGTGT 61.881 66.667 0.00 0.00 0.00 4.16
219 220 3.879885 TGGTGGGGTTGGTCGGTG 61.880 66.667 0.00 0.00 0.00 4.94
220 221 2.968902 TAGTGGTGGGGTTGGTCGGT 62.969 60.000 0.00 0.00 0.00 4.69
221 222 1.559065 ATAGTGGTGGGGTTGGTCGG 61.559 60.000 0.00 0.00 0.00 4.79
222 223 0.107848 GATAGTGGTGGGGTTGGTCG 60.108 60.000 0.00 0.00 0.00 4.79
223 224 0.988832 TGATAGTGGTGGGGTTGGTC 59.011 55.000 0.00 0.00 0.00 4.02
224 225 1.354368 CTTGATAGTGGTGGGGTTGGT 59.646 52.381 0.00 0.00 0.00 3.67
225 226 1.633432 TCTTGATAGTGGTGGGGTTGG 59.367 52.381 0.00 0.00 0.00 3.77
226 227 3.200825 AGATCTTGATAGTGGTGGGGTTG 59.799 47.826 0.00 0.00 0.00 3.77
227 228 3.456277 GAGATCTTGATAGTGGTGGGGTT 59.544 47.826 0.00 0.00 0.00 4.11
228 229 3.041946 GAGATCTTGATAGTGGTGGGGT 58.958 50.000 0.00 0.00 0.00 4.95
229 230 2.036475 CGAGATCTTGATAGTGGTGGGG 59.964 54.545 3.60 0.00 0.00 4.96
230 231 2.546795 GCGAGATCTTGATAGTGGTGGG 60.547 54.545 14.59 0.00 0.00 4.61
231 232 2.748605 GCGAGATCTTGATAGTGGTGG 58.251 52.381 14.59 0.00 0.00 4.61
232 233 2.389059 CGCGAGATCTTGATAGTGGTG 58.611 52.381 14.59 0.00 0.00 4.17
233 234 1.338337 CCGCGAGATCTTGATAGTGGT 59.662 52.381 14.59 0.00 0.00 4.16
234 235 1.336332 CCCGCGAGATCTTGATAGTGG 60.336 57.143 14.59 10.54 0.00 4.00
235 236 1.932604 GCCCGCGAGATCTTGATAGTG 60.933 57.143 14.59 2.48 0.00 2.74
236 237 0.315568 GCCCGCGAGATCTTGATAGT 59.684 55.000 14.59 0.00 0.00 2.12
237 238 0.389166 GGCCCGCGAGATCTTGATAG 60.389 60.000 14.59 4.09 0.00 2.08
238 239 1.112916 TGGCCCGCGAGATCTTGATA 61.113 55.000 14.59 0.00 0.00 2.15
239 240 1.971505 TTGGCCCGCGAGATCTTGAT 61.972 55.000 14.59 0.00 0.00 2.57
240 241 2.178876 TTTGGCCCGCGAGATCTTGA 62.179 55.000 14.59 0.00 0.00 3.02
241 242 1.745115 TTTGGCCCGCGAGATCTTG 60.745 57.895 8.23 5.50 0.00 3.02
242 243 1.745489 GTTTGGCCCGCGAGATCTT 60.745 57.895 8.23 0.00 0.00 2.40
243 244 2.125106 GTTTGGCCCGCGAGATCT 60.125 61.111 8.23 0.00 0.00 2.75
244 245 1.819632 ATGTTTGGCCCGCGAGATC 60.820 57.895 8.23 0.00 0.00 2.75
245 246 2.114670 CATGTTTGGCCCGCGAGAT 61.115 57.895 8.23 0.00 0.00 2.75
246 247 2.745884 CATGTTTGGCCCGCGAGA 60.746 61.111 8.23 0.00 0.00 4.04
247 248 2.745884 TCATGTTTGGCCCGCGAG 60.746 61.111 8.23 0.00 0.00 5.03
248 249 3.053291 GTCATGTTTGGCCCGCGA 61.053 61.111 8.23 0.00 0.00 5.87
249 250 4.114997 GGTCATGTTTGGCCCGCG 62.115 66.667 0.00 0.00 42.15 6.46
254 255 0.605319 TCTCACGGGTCATGTTTGGC 60.605 55.000 0.00 0.00 0.00 4.52
255 256 1.806542 CTTCTCACGGGTCATGTTTGG 59.193 52.381 0.00 0.00 0.00 3.28
256 257 2.480419 GTCTTCTCACGGGTCATGTTTG 59.520 50.000 0.00 0.00 0.00 2.93
257 258 2.550208 GGTCTTCTCACGGGTCATGTTT 60.550 50.000 0.00 0.00 0.00 2.83
258 259 1.002087 GGTCTTCTCACGGGTCATGTT 59.998 52.381 0.00 0.00 0.00 2.71
259 260 0.608640 GGTCTTCTCACGGGTCATGT 59.391 55.000 0.00 0.00 0.00 3.21
260 261 0.458543 CGGTCTTCTCACGGGTCATG 60.459 60.000 0.00 0.00 0.00 3.07
261 262 1.890894 CGGTCTTCTCACGGGTCAT 59.109 57.895 0.00 0.00 0.00 3.06
262 263 2.927580 GCGGTCTTCTCACGGGTCA 61.928 63.158 0.00 0.00 0.00 4.02
263 264 2.126031 GCGGTCTTCTCACGGGTC 60.126 66.667 0.00 0.00 0.00 4.46
264 265 2.915659 TGCGGTCTTCTCACGGGT 60.916 61.111 0.00 0.00 0.00 5.28
265 266 2.125912 CTGCGGTCTTCTCACGGG 60.126 66.667 0.00 0.00 0.00 5.28
266 267 2.811317 GCTGCGGTCTTCTCACGG 60.811 66.667 0.00 0.00 0.00 4.94
267 268 1.803519 GAGCTGCGGTCTTCTCACG 60.804 63.158 0.00 0.00 0.00 4.35
268 269 1.446966 GGAGCTGCGGTCTTCTCAC 60.447 63.158 0.00 0.00 0.00 3.51
269 270 1.599606 GAGGAGCTGCGGTCTTCTCA 61.600 60.000 16.18 0.00 34.20 3.27
270 271 1.140804 GAGGAGCTGCGGTCTTCTC 59.859 63.158 8.85 8.85 34.20 2.87
271 272 2.705821 CGAGGAGCTGCGGTCTTCT 61.706 63.158 14.25 7.60 34.72 2.85
272 273 2.202676 CGAGGAGCTGCGGTCTTC 60.203 66.667 0.00 8.89 33.78 2.87
273 274 4.443266 GCGAGGAGCTGCGGTCTT 62.443 66.667 0.00 0.00 44.04 3.01
283 284 4.200283 GGGCGACAGAGCGAGGAG 62.200 72.222 0.00 0.00 38.18 3.69
285 286 4.803426 GTGGGCGACAGAGCGAGG 62.803 72.222 0.00 0.00 38.18 4.63
286 287 4.803426 GGTGGGCGACAGAGCGAG 62.803 72.222 1.14 0.00 38.18 5.03
302 303 4.675029 AAACGGTCTCCACGGCGG 62.675 66.667 13.24 0.00 35.23 6.13
303 304 2.663852 AAAACGGTCTCCACGGCG 60.664 61.111 4.80 4.80 35.23 6.46
304 305 1.161563 TTCAAAACGGTCTCCACGGC 61.162 55.000 0.00 0.00 35.23 5.68
305 306 1.519408 ATTCAAAACGGTCTCCACGG 58.481 50.000 0.00 0.00 35.23 4.94
306 307 4.024725 TGTTTATTCAAAACGGTCTCCACG 60.025 41.667 0.00 0.00 33.05 4.94
307 308 5.209977 GTGTTTATTCAAAACGGTCTCCAC 58.790 41.667 0.00 0.00 33.05 4.02
308 309 4.882427 TGTGTTTATTCAAAACGGTCTCCA 59.118 37.500 0.00 0.00 33.05 3.86
309 310 5.427036 TGTGTTTATTCAAAACGGTCTCC 57.573 39.130 0.00 0.00 33.05 3.71
310 311 9.620660 ATTAATGTGTTTATTCAAAACGGTCTC 57.379 29.630 0.00 0.00 33.05 3.36
311 312 9.974980 AATTAATGTGTTTATTCAAAACGGTCT 57.025 25.926 0.00 0.00 33.05 3.85
322 323 8.784043 GCGGGAGAGATAATTAATGTGTTTATT 58.216 33.333 0.00 0.00 0.00 1.40
323 324 8.157476 AGCGGGAGAGATAATTAATGTGTTTAT 58.843 33.333 0.00 0.00 0.00 1.40
324 325 7.441157 CAGCGGGAGAGATAATTAATGTGTTTA 59.559 37.037 0.00 0.00 0.00 2.01
325 326 6.260936 CAGCGGGAGAGATAATTAATGTGTTT 59.739 38.462 0.00 0.00 0.00 2.83
326 327 5.760253 CAGCGGGAGAGATAATTAATGTGTT 59.240 40.000 0.00 0.00 0.00 3.32
327 328 5.300752 CAGCGGGAGAGATAATTAATGTGT 58.699 41.667 0.00 0.00 0.00 3.72
328 329 4.153117 GCAGCGGGAGAGATAATTAATGTG 59.847 45.833 0.00 0.00 0.00 3.21
329 330 4.040952 AGCAGCGGGAGAGATAATTAATGT 59.959 41.667 0.00 0.00 0.00 2.71
330 331 4.573900 AGCAGCGGGAGAGATAATTAATG 58.426 43.478 0.00 0.00 0.00 1.90
331 332 4.899352 AGCAGCGGGAGAGATAATTAAT 57.101 40.909 0.00 0.00 0.00 1.40
332 333 4.141711 ACAAGCAGCGGGAGAGATAATTAA 60.142 41.667 0.00 0.00 0.00 1.40
333 334 3.388024 ACAAGCAGCGGGAGAGATAATTA 59.612 43.478 0.00 0.00 0.00 1.40
334 335 2.171448 ACAAGCAGCGGGAGAGATAATT 59.829 45.455 0.00 0.00 0.00 1.40
335 336 1.765314 ACAAGCAGCGGGAGAGATAAT 59.235 47.619 0.00 0.00 0.00 1.28
336 337 1.195115 ACAAGCAGCGGGAGAGATAA 58.805 50.000 0.00 0.00 0.00 1.75
337 338 1.134699 CAACAAGCAGCGGGAGAGATA 60.135 52.381 0.00 0.00 0.00 1.98
338 339 0.392193 CAACAAGCAGCGGGAGAGAT 60.392 55.000 0.00 0.00 0.00 2.75
339 340 1.004560 CAACAAGCAGCGGGAGAGA 60.005 57.895 0.00 0.00 0.00 3.10
340 341 0.037326 TACAACAAGCAGCGGGAGAG 60.037 55.000 0.00 0.00 0.00 3.20
341 342 0.394938 TTACAACAAGCAGCGGGAGA 59.605 50.000 0.00 0.00 0.00 3.71
342 343 1.234821 TTTACAACAAGCAGCGGGAG 58.765 50.000 0.00 0.00 0.00 4.30
343 344 1.681538 TTTTACAACAAGCAGCGGGA 58.318 45.000 0.00 0.00 0.00 5.14
344 345 2.500509 TTTTTACAACAAGCAGCGGG 57.499 45.000 0.00 0.00 0.00 6.13
377 378 0.096976 ATATGCTCGTGCGTTGCAAC 59.903 50.000 19.89 19.89 41.47 4.17
378 379 0.096802 CATATGCTCGTGCGTTGCAA 59.903 50.000 9.76 0.00 41.47 4.08
379 380 1.018752 ACATATGCTCGTGCGTTGCA 61.019 50.000 9.76 14.15 43.34 4.08
380 381 0.587242 CACATATGCTCGTGCGTTGC 60.587 55.000 9.76 5.71 43.34 4.17
381 382 3.497110 CACATATGCTCGTGCGTTG 57.503 52.632 9.76 10.11 43.34 4.10
391 392 8.056571 CGTTTTAGTTTAGACTAGCACATATGC 58.943 37.037 1.58 0.00 43.73 3.14
392 393 9.297586 TCGTTTTAGTTTAGACTAGCACATATG 57.702 33.333 0.00 0.00 39.43 1.78
395 396 9.865321 TTATCGTTTTAGTTTAGACTAGCACAT 57.135 29.630 0.00 0.00 39.43 3.21
396 397 9.132521 GTTATCGTTTTAGTTTAGACTAGCACA 57.867 33.333 0.00 0.00 39.43 4.57
397 398 9.132521 TGTTATCGTTTTAGTTTAGACTAGCAC 57.867 33.333 0.00 0.00 39.43 4.40
398 399 9.865321 ATGTTATCGTTTTAGTTTAGACTAGCA 57.135 29.630 0.00 0.00 39.43 3.49
433 434 5.726980 TTTGCTAAATGCTCCATCAGTTT 57.273 34.783 0.00 0.00 43.37 2.66
459 460 4.274950 CGAAAGAAGTTTCTAAGGGTGCAA 59.725 41.667 0.00 0.00 40.10 4.08
461 462 4.062991 TCGAAAGAAGTTTCTAAGGGTGC 58.937 43.478 0.00 0.00 40.10 5.01
534 535 5.180680 GTCAGCCTTTAACGGTAGATTTTGT 59.819 40.000 0.00 0.00 0.00 2.83
544 545 1.611519 TTTGGGTCAGCCTTTAACGG 58.388 50.000 0.00 0.00 34.45 4.44
545 546 3.181485 TGTTTTTGGGTCAGCCTTTAACG 60.181 43.478 0.00 0.00 34.45 3.18
565 566 1.279271 AGCTAAACGCCTCCTTCATGT 59.721 47.619 0.00 0.00 40.39 3.21
566 567 2.029838 AGCTAAACGCCTCCTTCATG 57.970 50.000 0.00 0.00 40.39 3.07
567 568 2.749621 CAAAGCTAAACGCCTCCTTCAT 59.250 45.455 0.00 0.00 40.39 2.57
568 569 2.151202 CAAAGCTAAACGCCTCCTTCA 58.849 47.619 0.00 0.00 40.39 3.02
569 570 1.135660 GCAAAGCTAAACGCCTCCTTC 60.136 52.381 0.00 0.00 40.39 3.46
570 571 0.881796 GCAAAGCTAAACGCCTCCTT 59.118 50.000 0.00 0.00 40.39 3.36
571 572 0.250727 TGCAAAGCTAAACGCCTCCT 60.251 50.000 0.00 0.00 40.39 3.69
604 640 2.166254 GGAGGAGCAAGAGAGTGAGAAG 59.834 54.545 0.00 0.00 0.00 2.85
829 866 1.462731 GGGATGTGTGGCTGCAAACA 61.463 55.000 0.50 2.32 0.00 2.83
843 880 2.251409 ATGCATCTTCTGACGGGATG 57.749 50.000 0.00 8.95 39.59 3.51
856 893 2.590821 AGCTGGGGTTTGATATGCATC 58.409 47.619 0.19 0.00 0.00 3.91
916 953 1.606889 GGACGGAGACTCCACACCT 60.607 63.158 21.49 0.00 35.91 4.00
925 962 4.368543 AAACGGCCGGACGGAGAC 62.369 66.667 36.68 0.00 38.39 3.36
954 991 1.137675 TCAAGTGATCATCAGCGAGGG 59.862 52.381 0.00 0.00 0.00 4.30
1369 1406 2.181021 GAACTCGACGGCCGTGAT 59.819 61.111 39.65 16.95 39.75 3.06
1392 1429 2.990395 TGGTACACGCCACGGCTA 60.990 61.111 6.48 0.00 39.32 3.93
1863 1900 1.564483 GGGTATTGGGGTTCGGGTCA 61.564 60.000 0.00 0.00 0.00 4.02
1919 1956 1.301293 GGGCAGGAGTCTTTCTGGG 59.699 63.158 6.37 0.00 0.00 4.45
1943 1980 4.373116 TGTCGAGGGGCTTGTCGC 62.373 66.667 0.00 0.00 36.11 5.19
1962 1999 2.888998 GAACACCGCCGTTTCGCTT 61.889 57.895 0.00 0.00 0.00 4.68
1987 2024 3.406595 GATGTCCCCCGGCTTCCTG 62.407 68.421 0.00 0.00 0.00 3.86
2028 2065 2.528127 TTCCTCTTCCGGGTGGCA 60.528 61.111 0.00 0.00 34.14 4.92
2081 2118 2.068821 ATGCTCGATGGCCTCAGGT 61.069 57.895 3.32 0.00 0.00 4.00
2083 2120 0.179065 TTCATGCTCGATGGCCTCAG 60.179 55.000 3.32 0.00 32.26 3.35
2210 2247 1.296392 CCCAGCTTGGACACGATCA 59.704 57.895 0.00 0.00 40.96 2.92
2265 2302 2.027653 CACTCTCCCCTTCTCCTTGTTC 60.028 54.545 0.00 0.00 0.00 3.18
2561 2599 3.458163 GGATCCTCGTCCCACGCA 61.458 66.667 3.84 0.00 42.21 5.24
2567 2605 1.657822 GAAGCAAAGGATCCTCGTCC 58.342 55.000 16.52 4.15 38.62 4.79
2568 2606 1.657822 GGAAGCAAAGGATCCTCGTC 58.342 55.000 16.52 10.36 0.00 4.20
2569 2607 0.108138 CGGAAGCAAAGGATCCTCGT 60.108 55.000 16.52 3.01 0.00 4.18
2570 2608 2.682893 CGGAAGCAAAGGATCCTCG 58.317 57.895 16.52 10.82 0.00 4.63
2583 2621 2.943978 AAGAGGGTCACGGCGGAAG 61.944 63.158 13.24 0.03 0.00 3.46
2584 2622 2.920912 AAGAGGGTCACGGCGGAA 60.921 61.111 13.24 0.00 0.00 4.30
2585 2623 3.691342 CAAGAGGGTCACGGCGGA 61.691 66.667 13.24 2.41 0.00 5.54
2586 2624 4.003788 ACAAGAGGGTCACGGCGG 62.004 66.667 13.24 0.00 0.00 6.13
2587 2625 2.149803 TACACAAGAGGGTCACGGCG 62.150 60.000 4.80 4.80 0.00 6.46
2588 2626 0.034337 TTACACAAGAGGGTCACGGC 59.966 55.000 0.00 0.00 0.00 5.68
2589 2627 1.343465 AGTTACACAAGAGGGTCACGG 59.657 52.381 0.00 0.00 0.00 4.94
2675 2713 1.445582 CACGCTCCGGTTCTGTACC 60.446 63.158 0.00 0.00 44.03 3.34
2741 2780 2.140717 CGAGACCTAACCACGCTTTTT 58.859 47.619 0.00 0.00 0.00 1.94
2744 2783 1.183676 ACCGAGACCTAACCACGCTT 61.184 55.000 0.00 0.00 0.00 4.68
2745 2784 1.593296 GACCGAGACCTAACCACGCT 61.593 60.000 0.00 0.00 0.00 5.07
2748 2787 1.509923 CCGACCGAGACCTAACCAC 59.490 63.158 0.00 0.00 0.00 4.16
2749 2788 2.345760 GCCGACCGAGACCTAACCA 61.346 63.158 0.00 0.00 0.00 3.67
2751 2790 1.310933 TGAGCCGACCGAGACCTAAC 61.311 60.000 0.00 0.00 0.00 2.34
2752 2791 1.001764 TGAGCCGACCGAGACCTAA 60.002 57.895 0.00 0.00 0.00 2.69
2753 2792 1.451567 CTGAGCCGACCGAGACCTA 60.452 63.158 0.00 0.00 0.00 3.08
2756 2795 0.173708 AAATCTGAGCCGACCGAGAC 59.826 55.000 0.00 0.00 0.00 3.36
2757 2796 1.758936 TAAATCTGAGCCGACCGAGA 58.241 50.000 0.00 0.00 0.00 4.04
2758 2797 2.194271 GTTAAATCTGAGCCGACCGAG 58.806 52.381 0.00 0.00 0.00 4.63
2759 2798 1.134907 GGTTAAATCTGAGCCGACCGA 60.135 52.381 0.00 0.00 0.00 4.69
2760 2799 1.287425 GGTTAAATCTGAGCCGACCG 58.713 55.000 0.00 0.00 0.00 4.79
2761 2800 2.396590 TGGTTAAATCTGAGCCGACC 57.603 50.000 0.00 0.00 0.00 4.79
2762 2801 4.909894 GATTTGGTTAAATCTGAGCCGAC 58.090 43.478 5.70 0.00 45.57 4.79
2830 2984 6.778834 TGTGTCAAGATCCATGCAATTATT 57.221 33.333 0.00 0.00 0.00 1.40
2832 2986 5.945191 TCTTGTGTCAAGATCCATGCAATTA 59.055 36.000 7.92 0.00 0.00 1.40
2837 2991 4.548991 GATCTTGTGTCAAGATCCATGC 57.451 45.455 27.92 13.34 44.17 4.06
2848 3004 9.443283 GATGCTATATTTGTTTGATCTTGTGTC 57.557 33.333 0.00 0.00 0.00 3.67
2851 3007 7.134815 GCGATGCTATATTTGTTTGATCTTGT 58.865 34.615 0.00 0.00 0.00 3.16
2920 3078 0.179097 GCCGTAGCTTAGCTGCTTCT 60.179 55.000 17.97 5.76 43.74 2.85
2922 3080 4.522971 GCCGTAGCTTAGCTGCTT 57.477 55.556 17.97 0.00 43.74 3.91
2965 3123 2.181777 GCGATCCGACAGCTCACA 59.818 61.111 0.00 0.00 0.00 3.58
2973 3131 0.671251 AGGAAGATGAGCGATCCGAC 59.329 55.000 0.00 0.00 37.05 4.79
2980 3138 0.388659 CTCTGGGAGGAAGATGAGCG 59.611 60.000 0.00 0.00 0.00 5.03
2981 3139 1.688197 CTCTCTGGGAGGAAGATGAGC 59.312 57.143 0.00 0.00 38.35 4.26
2982 3140 1.688197 GCTCTCTGGGAGGAAGATGAG 59.312 57.143 6.69 0.00 42.08 2.90
2983 3141 1.007600 TGCTCTCTGGGAGGAAGATGA 59.992 52.381 6.69 0.00 39.44 2.92
2984 3142 1.493861 TGCTCTCTGGGAGGAAGATG 58.506 55.000 6.69 0.00 39.44 2.90
2985 3143 2.260639 TTGCTCTCTGGGAGGAAGAT 57.739 50.000 7.46 0.00 45.24 2.40
2986 3144 3.794786 TTGCTCTCTGGGAGGAAGA 57.205 52.632 7.46 0.00 45.24 2.87
2996 3154 3.181471 CCAGACATAATCCGTTGCTCTCT 60.181 47.826 0.00 0.00 0.00 3.10
3001 3159 1.940613 GTCCCAGACATAATCCGTTGC 59.059 52.381 0.00 0.00 32.09 4.17
3012 3170 0.040351 AGCTAGCTCAGTCCCAGACA 59.960 55.000 12.68 0.00 34.60 3.41
3013 3171 1.134848 CAAGCTAGCTCAGTCCCAGAC 60.135 57.143 19.65 0.00 0.00 3.51
3014 3172 1.189752 CAAGCTAGCTCAGTCCCAGA 58.810 55.000 19.65 0.00 0.00 3.86
3017 3175 0.179086 GCTCAAGCTAGCTCAGTCCC 60.179 60.000 19.65 1.02 39.50 4.46
3019 3177 2.376808 TTGCTCAAGCTAGCTCAGTC 57.623 50.000 19.65 12.87 43.19 3.51
3022 3180 3.339253 TTCATTGCTCAAGCTAGCTCA 57.661 42.857 19.65 8.87 43.19 4.26
3065 3224 7.862873 CCTTTTGAAGTTGTGATTCCTTCTTAC 59.137 37.037 0.00 0.00 36.43 2.34
3079 3238 3.885724 ACAACACCCCTTTTGAAGTTG 57.114 42.857 0.00 0.00 41.37 3.16
3087 3246 3.076937 AGCCCTAATAACAACACCCCTTT 59.923 43.478 0.00 0.00 0.00 3.11
3090 3249 2.820728 AGCCCTAATAACAACACCCC 57.179 50.000 0.00 0.00 0.00 4.95
3135 3294 0.889994 TGGGCAATGTGAAGACATGC 59.110 50.000 0.00 0.00 42.30 4.06
3143 3302 7.201902 GGAAGAATAACAATATGGGCAATGTGA 60.202 37.037 0.00 0.00 0.00 3.58
3145 3304 6.041979 GGGAAGAATAACAATATGGGCAATGT 59.958 38.462 0.00 0.00 0.00 2.71
3153 3312 5.560183 GCGTTCGGGGAAGAATAACAATATG 60.560 44.000 0.00 0.00 32.25 1.78
3162 3321 1.447314 GTCGCGTTCGGGGAAGAAT 60.447 57.895 5.77 0.00 39.56 2.40
3170 3329 1.073177 ATTGTTTAGGTCGCGTTCGG 58.927 50.000 5.77 0.00 36.13 4.30
3187 3346 5.077564 GGTGGGTGGAGAAGAGTAAAAATT 58.922 41.667 0.00 0.00 0.00 1.82
3210 3369 1.470098 CAACAGAAGATTGGGCCGAAG 59.530 52.381 6.30 0.00 0.00 3.79
3221 3380 1.070786 GGGTGACGGCAACAGAAGA 59.929 57.895 9.46 0.00 31.69 2.87
3257 3416 3.845259 TAGGGCGGACCGTGATGC 61.845 66.667 16.73 0.00 46.96 3.91
3258 3417 2.106332 GTAGGGCGGACCGTGATG 59.894 66.667 16.73 0.00 46.96 3.07
3278 3437 3.714487 CTGGTAATGGCCGTGGGGG 62.714 68.421 0.00 0.00 39.58 5.40
3279 3438 2.124320 CTGGTAATGGCCGTGGGG 60.124 66.667 0.00 0.00 0.00 4.96
3291 3450 2.728013 AGGTATAGAGGGATGGCTGGTA 59.272 50.000 0.00 0.00 0.00 3.25
3321 3480 1.374252 GAGGTTGACGGCGACACAT 60.374 57.895 16.62 6.35 0.00 3.21
3323 3482 1.733399 GAGAGGTTGACGGCGACAC 60.733 63.158 16.62 8.60 0.00 3.67
3351 3510 1.002900 AGGTTCGATTGTTTGTGTGCG 60.003 47.619 0.00 0.00 0.00 5.34
3352 3511 2.290641 AGAGGTTCGATTGTTTGTGTGC 59.709 45.455 0.00 0.00 0.00 4.57
3366 3525 0.537188 TGGAGCCGAATCAGAGGTTC 59.463 55.000 0.00 0.00 37.08 3.62
3376 3535 1.815003 CATCGCATGTGGAGCCGAA 60.815 57.895 6.39 0.00 0.00 4.30
3377 3536 2.202919 CATCGCATGTGGAGCCGA 60.203 61.111 6.39 0.00 0.00 5.54
3380 3539 2.515523 AGGCATCGCATGTGGAGC 60.516 61.111 6.39 10.53 0.00 4.70
3391 3550 0.461870 TATGACACGGCACAGGCATC 60.462 55.000 0.00 0.00 43.71 3.91
3393 3552 1.079197 CTATGACACGGCACAGGCA 60.079 57.895 0.00 0.00 43.71 4.75
3406 3565 3.251016 ACTAGATGGAGCCAGCTATGA 57.749 47.619 14.24 0.00 42.87 2.15
3410 3569 0.179936 GCAACTAGATGGAGCCAGCT 59.820 55.000 12.38 12.38 45.29 4.24
3421 3580 2.707849 GGTCGAGCCGGCAACTAGA 61.708 63.158 31.54 16.71 30.88 2.43
3442 3613 1.367659 GATGAGTGAGAGCAAGGTGC 58.632 55.000 0.00 0.00 45.46 5.01
3448 3619 1.463674 TGCTACGATGAGTGAGAGCA 58.536 50.000 0.00 0.00 37.58 4.26
3459 3630 2.362397 ACCGAGACATGAATGCTACGAT 59.638 45.455 0.00 0.00 0.00 3.73
3464 3635 2.106566 AGAGACCGAGACATGAATGCT 58.893 47.619 0.00 0.00 0.00 3.79
3467 3638 1.759445 CCCAGAGACCGAGACATGAAT 59.241 52.381 0.00 0.00 0.00 2.57
3471 3642 0.259065 TAGCCCAGAGACCGAGACAT 59.741 55.000 0.00 0.00 0.00 3.06
3487 3658 6.634436 CACTCAAAAAGATTCTTGTGTGTAGC 59.366 38.462 13.46 0.00 40.01 3.58
3499 3670 5.296780 TCTTGAACGAGCACTCAAAAAGATT 59.703 36.000 0.00 0.00 31.41 2.40
3507 3678 2.890808 AGTTCTTGAACGAGCACTCA 57.109 45.000 7.71 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.