Multiple sequence alignment - TraesCS3A01G305400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G305400 chr3A 100.000 4635 0 0 912 5546 541257146 541261780 0.000000e+00 8560.0
1 TraesCS3A01G305400 chr3A 100.000 644 0 0 1 644 541256235 541256878 0.000000e+00 1190.0
2 TraesCS3A01G305400 chr3A 99.668 602 2 0 4945 5546 541275231 541275832 0.000000e+00 1101.0
3 TraesCS3A01G305400 chr3A 98.671 602 8 0 4945 5546 541280911 541281512 0.000000e+00 1068.0
4 TraesCS3A01G305400 chr3A 93.711 159 6 2 1 155 430774546 430774388 9.290000e-58 235.0
5 TraesCS3A01G305400 chr3A 100.000 42 0 0 3941 3982 541260135 541260176 1.660000e-10 78.7
6 TraesCS3A01G305400 chr3A 100.000 42 0 0 3901 3942 541260175 541260216 1.660000e-10 78.7
7 TraesCS3A01G305400 chr3A 88.525 61 6 1 161 220 70846659 70846719 7.710000e-09 73.1
8 TraesCS3A01G305400 chr3A 85.965 57 8 0 165 221 597186155 597186099 1.670000e-05 62.1
9 TraesCS3A01G305400 chr3B 93.222 3423 175 23 912 4325 536079036 536075662 0.000000e+00 4983.0
10 TraesCS3A01G305400 chr3B 93.045 532 24 8 4383 4905 536075552 536075025 0.000000e+00 765.0
11 TraesCS3A01G305400 chr3B 86.550 684 46 11 4901 5546 536074908 536074233 0.000000e+00 712.0
12 TraesCS3A01G305400 chr3B 88.515 357 15 11 290 644 536079576 536079244 5.170000e-110 409.0
13 TraesCS3A01G305400 chr3D 95.330 2291 78 11 1656 3942 410379646 410377381 0.000000e+00 3611.0
14 TraesCS3A01G305400 chr3D 93.938 1633 68 10 3941 5546 410377422 410375794 0.000000e+00 2438.0
15 TraesCS3A01G305400 chr3D 91.958 659 41 6 963 1610 410380306 410379649 0.000000e+00 913.0
16 TraesCS3A01G305400 chr3D 90.331 362 12 11 291 644 410381070 410380724 2.360000e-123 453.0
17 TraesCS3A01G305400 chr3D 93.548 155 8 2 3 155 570782594 570782440 4.320000e-56 230.0
18 TraesCS3A01G305400 chr3D 92.500 160 6 5 1 156 154427053 154426896 2.010000e-54 224.0
19 TraesCS3A01G305400 chrUn 93.750 160 4 4 1 155 104276511 104276353 9.290000e-58 235.0
20 TraesCS3A01G305400 chr4D 93.125 160 5 5 1 156 398675362 398675519 4.320000e-56 230.0
21 TraesCS3A01G305400 chr4D 92.547 161 8 3 1 159 13607179 13607021 1.550000e-55 228.0
22 TraesCS3A01G305400 chr4D 92.547 161 5 5 1 156 35123968 35123810 2.010000e-54 224.0
23 TraesCS3A01G305400 chr4D 97.619 42 1 0 165 206 416757554 416757513 7.710000e-09 73.1
24 TraesCS3A01G305400 chr6D 92.500 160 6 5 1 156 377176000 377175843 2.010000e-54 224.0
25 TraesCS3A01G305400 chr6D 88.235 51 4 2 165 214 464400903 464400854 6.000000e-05 60.2
26 TraesCS3A01G305400 chr1D 92.500 160 7 2 1 155 415524407 415524248 2.010000e-54 224.0
27 TraesCS3A01G305400 chr1B 87.342 79 7 3 219 295 11882706 11882629 2.750000e-13 87.9
28 TraesCS3A01G305400 chr6A 80.488 123 11 5 165 287 581446168 581446277 1.280000e-11 82.4
29 TraesCS3A01G305400 chr2B 91.071 56 1 3 165 218 25808189 25808136 7.710000e-09 73.1
30 TraesCS3A01G305400 chr7A 87.931 58 6 1 165 222 47704458 47704514 3.590000e-07 67.6
31 TraesCS3A01G305400 chr5A 87.273 55 6 1 161 214 655981142 655981196 1.670000e-05 62.1
32 TraesCS3A01G305400 chr5B 85.714 56 8 0 165 220 672582805 672582750 6.000000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G305400 chr3A 541256235 541261780 5545 False 2476.85 8560 100.00000 1 5546 4 chr3A.!!$F4 5545
1 TraesCS3A01G305400 chr3A 541275231 541275832 601 False 1101.00 1101 99.66800 4945 5546 1 chr3A.!!$F2 601
2 TraesCS3A01G305400 chr3A 541280911 541281512 601 False 1068.00 1068 98.67100 4945 5546 1 chr3A.!!$F3 601
3 TraesCS3A01G305400 chr3B 536074233 536079576 5343 True 1717.25 4983 90.33300 290 5546 4 chr3B.!!$R1 5256
4 TraesCS3A01G305400 chr3D 410375794 410381070 5276 True 1853.75 3611 92.88925 291 5546 4 chr3D.!!$R3 5255

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.107831 GGGGCGTGTGGCATTATCTA 59.892 55.0 0.00 0.0 46.16 1.98 F
1401 1514 0.034896 CCTAGCGTGGGAGTGTTGTT 59.965 55.0 0.00 0.0 0.00 2.83 F
1498 1613 0.319405 CGACCTTTACCGACCCACTT 59.681 55.0 0.00 0.0 0.00 3.16 F
1611 1729 0.376852 GCACGGCATTGCTATTCGAA 59.623 50.0 8.82 0.0 39.59 3.71 F
2486 2607 2.232452 GCTGCAGGACTCTTAGAAGACA 59.768 50.0 17.12 0.0 0.00 3.41 F
4056 4205 0.613260 TTCTGGTTCAGGTCCATCGG 59.387 55.0 0.00 0.0 34.26 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 2039 0.034574 AAACACACCTGTCAGCACCA 60.035 50.000 0.00 0.0 0.00 4.17 R
2397 2518 0.042448 GAAGTGTGCAAACGTCGTCC 60.042 55.000 7.22 0.0 0.00 4.79 R
2486 2607 1.202330 CCTGAGGGAGCTGAACTGAT 58.798 55.000 0.00 0.0 33.58 2.90 R
3335 3456 1.529244 AGCACTCCCACAAACCTGC 60.529 57.895 0.00 0.0 0.00 4.85 R
4476 4699 0.397941 CAGTCCTGGAGCTCAAACCA 59.602 55.000 17.19 3.6 34.81 3.67 R
5526 5912 0.315886 TTGTCGTGCGTGGTGTCTAT 59.684 50.000 0.00 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.994201 GACGCGCGGTGACTGTCA 62.994 66.667 35.22 6.36 0.00 3.58
60 61 4.379243 CCACGAGGTGCGAGGCTT 62.379 66.667 0.00 0.00 43.56 4.35
61 62 2.571757 CACGAGGTGCGAGGCTTA 59.428 61.111 0.00 0.00 44.57 3.09
62 63 1.080093 CACGAGGTGCGAGGCTTAA 60.080 57.895 0.00 0.00 44.57 1.85
63 64 1.080025 ACGAGGTGCGAGGCTTAAC 60.080 57.895 0.00 0.00 44.57 2.01
64 65 2.158959 CGAGGTGCGAGGCTTAACG 61.159 63.158 0.00 0.00 44.57 3.18
65 66 1.080025 GAGGTGCGAGGCTTAACGT 60.080 57.895 0.00 0.00 0.00 3.99
66 67 0.171903 GAGGTGCGAGGCTTAACGTA 59.828 55.000 0.00 0.00 0.00 3.57
67 68 0.108945 AGGTGCGAGGCTTAACGTAC 60.109 55.000 6.74 6.74 42.38 3.67
68 69 1.408474 GGTGCGAGGCTTAACGTACG 61.408 60.000 15.01 15.01 43.56 3.67
69 70 1.153978 TGCGAGGCTTAACGTACGG 60.154 57.895 21.06 2.24 0.00 4.02
70 71 1.875364 GCGAGGCTTAACGTACGGG 60.875 63.158 21.06 7.74 0.00 5.28
71 72 1.226773 CGAGGCTTAACGTACGGGG 60.227 63.158 21.06 7.38 0.00 5.73
72 73 1.520120 GAGGCTTAACGTACGGGGC 60.520 63.158 21.06 17.15 0.00 5.80
73 74 2.887086 GGCTTAACGTACGGGGCG 60.887 66.667 21.06 6.38 0.00 6.13
74 75 2.125952 GCTTAACGTACGGGGCGT 60.126 61.111 21.06 1.68 45.07 5.68
75 76 2.447070 GCTTAACGTACGGGGCGTG 61.447 63.158 21.06 5.63 42.10 5.34
76 77 1.080569 CTTAACGTACGGGGCGTGT 60.081 57.895 21.06 0.00 42.10 4.49
77 78 1.346378 CTTAACGTACGGGGCGTGTG 61.346 60.000 21.06 0.00 42.10 3.82
78 79 2.762006 TTAACGTACGGGGCGTGTGG 62.762 60.000 21.06 0.00 42.10 4.17
81 82 4.770874 GTACGGGGCGTGTGGCAT 62.771 66.667 0.00 0.00 46.16 4.40
82 83 4.023234 TACGGGGCGTGTGGCATT 62.023 61.111 0.00 0.00 46.16 3.56
83 84 2.657066 TACGGGGCGTGTGGCATTA 61.657 57.895 0.00 0.00 46.16 1.90
84 85 1.973816 TACGGGGCGTGTGGCATTAT 61.974 55.000 0.00 0.00 46.16 1.28
85 86 2.542907 CGGGGCGTGTGGCATTATC 61.543 63.158 0.00 0.00 46.16 1.75
86 87 1.152963 GGGGCGTGTGGCATTATCT 60.153 57.895 0.00 0.00 46.16 1.98
87 88 0.107831 GGGGCGTGTGGCATTATCTA 59.892 55.000 0.00 0.00 46.16 1.98
88 89 1.271379 GGGGCGTGTGGCATTATCTAT 60.271 52.381 0.00 0.00 46.16 1.98
89 90 2.504367 GGGCGTGTGGCATTATCTATT 58.496 47.619 0.00 0.00 46.16 1.73
90 91 2.884639 GGGCGTGTGGCATTATCTATTT 59.115 45.455 0.00 0.00 46.16 1.40
91 92 3.058224 GGGCGTGTGGCATTATCTATTTC 60.058 47.826 0.00 0.00 46.16 2.17
92 93 3.363970 GGCGTGTGGCATTATCTATTTCG 60.364 47.826 0.00 0.00 46.16 3.46
93 94 3.799035 CGTGTGGCATTATCTATTTCGC 58.201 45.455 0.00 0.00 0.00 4.70
94 95 3.363970 CGTGTGGCATTATCTATTTCGCC 60.364 47.826 0.00 0.00 40.02 5.54
95 96 3.058224 GTGTGGCATTATCTATTTCGCCC 60.058 47.826 0.00 0.00 38.81 6.13
96 97 3.146066 GTGGCATTATCTATTTCGCCCA 58.854 45.455 0.00 0.00 38.81 5.36
97 98 3.058224 GTGGCATTATCTATTTCGCCCAC 60.058 47.826 0.00 0.00 38.81 4.61
98 99 3.146066 GGCATTATCTATTTCGCCCACA 58.854 45.455 0.00 0.00 33.31 4.17
99 100 3.058224 GGCATTATCTATTTCGCCCACAC 60.058 47.826 0.00 0.00 33.31 3.82
100 101 3.363970 GCATTATCTATTTCGCCCACACG 60.364 47.826 0.00 0.00 0.00 4.49
101 102 1.860676 TATCTATTTCGCCCACACGC 58.139 50.000 0.00 0.00 0.00 5.34
102 103 0.107897 ATCTATTTCGCCCACACGCA 60.108 50.000 0.00 0.00 0.00 5.24
103 104 1.017177 TCTATTTCGCCCACACGCAC 61.017 55.000 0.00 0.00 0.00 5.34
104 105 2.291508 CTATTTCGCCCACACGCACG 62.292 60.000 0.00 0.00 0.00 5.34
119 120 2.885861 ACGCGTGTGAGAGGGATC 59.114 61.111 12.93 0.00 0.00 3.36
120 121 2.278206 CGCGTGTGAGAGGGATCG 60.278 66.667 0.00 0.00 0.00 3.69
121 122 2.761195 CGCGTGTGAGAGGGATCGA 61.761 63.158 0.00 0.00 0.00 3.59
122 123 1.064946 GCGTGTGAGAGGGATCGAG 59.935 63.158 0.00 0.00 0.00 4.04
123 124 1.377366 GCGTGTGAGAGGGATCGAGA 61.377 60.000 0.00 0.00 0.00 4.04
124 125 1.095600 CGTGTGAGAGGGATCGAGAA 58.904 55.000 0.00 0.00 0.00 2.87
125 126 1.472878 CGTGTGAGAGGGATCGAGAAA 59.527 52.381 0.00 0.00 0.00 2.52
126 127 2.094700 CGTGTGAGAGGGATCGAGAAAA 60.095 50.000 0.00 0.00 0.00 2.29
127 128 3.614150 CGTGTGAGAGGGATCGAGAAAAA 60.614 47.826 0.00 0.00 0.00 1.94
143 144 3.605946 AAAAAGAGGTGTGTGGGCA 57.394 47.368 0.00 0.00 0.00 5.36
144 145 2.086610 AAAAAGAGGTGTGTGGGCAT 57.913 45.000 0.00 0.00 0.00 4.40
145 146 2.086610 AAAAGAGGTGTGTGGGCATT 57.913 45.000 0.00 0.00 0.00 3.56
146 147 2.969821 AAAGAGGTGTGTGGGCATTA 57.030 45.000 0.00 0.00 0.00 1.90
147 148 2.200373 AAGAGGTGTGTGGGCATTAC 57.800 50.000 0.00 0.00 0.00 1.89
148 149 1.362224 AGAGGTGTGTGGGCATTACT 58.638 50.000 0.00 0.00 0.00 2.24
149 150 1.705186 AGAGGTGTGTGGGCATTACTT 59.295 47.619 0.00 0.00 0.00 2.24
150 151 1.812571 GAGGTGTGTGGGCATTACTTG 59.187 52.381 0.00 0.00 0.00 3.16
151 152 1.144913 AGGTGTGTGGGCATTACTTGT 59.855 47.619 0.00 0.00 0.00 3.16
152 153 1.960689 GGTGTGTGGGCATTACTTGTT 59.039 47.619 0.00 0.00 0.00 2.83
153 154 2.364002 GGTGTGTGGGCATTACTTGTTT 59.636 45.455 0.00 0.00 0.00 2.83
154 155 3.181470 GGTGTGTGGGCATTACTTGTTTT 60.181 43.478 0.00 0.00 0.00 2.43
155 156 4.438148 GTGTGTGGGCATTACTTGTTTTT 58.562 39.130 0.00 0.00 0.00 1.94
181 182 4.666928 GCATTGGGCATTACTTGTTTTG 57.333 40.909 0.00 0.00 43.97 2.44
182 183 4.064388 GCATTGGGCATTACTTGTTTTGT 58.936 39.130 0.00 0.00 43.97 2.83
183 184 4.152223 GCATTGGGCATTACTTGTTTTGTC 59.848 41.667 0.00 0.00 43.97 3.18
184 185 4.329462 TTGGGCATTACTTGTTTTGTCC 57.671 40.909 0.00 0.00 34.40 4.02
185 186 3.300388 TGGGCATTACTTGTTTTGTCCA 58.700 40.909 5.30 5.30 41.34 4.02
186 187 3.068873 TGGGCATTACTTGTTTTGTCCAC 59.931 43.478 5.30 0.00 38.86 4.02
187 188 3.068873 GGGCATTACTTGTTTTGTCCACA 59.931 43.478 0.00 0.00 33.99 4.17
188 189 4.048504 GGCATTACTTGTTTTGTCCACAC 58.951 43.478 0.00 0.00 0.00 3.82
189 190 3.728718 GCATTACTTGTTTTGTCCACACG 59.271 43.478 0.00 0.00 0.00 4.49
190 191 4.732355 GCATTACTTGTTTTGTCCACACGT 60.732 41.667 0.00 0.00 31.97 4.49
191 192 5.504337 GCATTACTTGTTTTGTCCACACGTA 60.504 40.000 0.00 0.00 30.02 3.57
192 193 6.487960 CATTACTTGTTTTGTCCACACGTAA 58.512 36.000 5.06 5.06 40.85 3.18
193 194 6.492007 TTACTTGTTTTGTCCACACGTAAA 57.508 33.333 0.00 0.00 36.48 2.01
194 195 5.570234 ACTTGTTTTGTCCACACGTAAAT 57.430 34.783 0.00 0.00 0.00 1.40
195 196 5.336744 ACTTGTTTTGTCCACACGTAAATG 58.663 37.500 0.00 0.00 0.00 2.32
196 197 4.966965 TGTTTTGTCCACACGTAAATGT 57.033 36.364 0.00 0.00 0.00 2.71
197 198 6.093771 ACTTGTTTTGTCCACACGTAAATGTA 59.906 34.615 0.00 0.00 0.00 2.29
198 199 6.621316 TGTTTTGTCCACACGTAAATGTAT 57.379 33.333 0.00 0.00 0.00 2.29
199 200 6.431278 TGTTTTGTCCACACGTAAATGTATG 58.569 36.000 0.00 0.00 0.00 2.39
200 201 5.614923 TTTGTCCACACGTAAATGTATGG 57.385 39.130 0.00 0.00 0.00 2.74
201 202 3.601435 TGTCCACACGTAAATGTATGGG 58.399 45.455 0.00 0.00 0.00 4.00
202 203 2.353579 GTCCACACGTAAATGTATGGGC 59.646 50.000 0.00 0.00 0.00 5.36
203 204 2.237643 TCCACACGTAAATGTATGGGCT 59.762 45.455 0.00 0.00 0.00 5.19
204 205 2.354510 CCACACGTAAATGTATGGGCTG 59.645 50.000 0.00 0.00 0.00 4.85
205 206 3.006940 CACACGTAAATGTATGGGCTGT 58.993 45.455 0.00 0.00 0.00 4.40
206 207 3.438781 CACACGTAAATGTATGGGCTGTT 59.561 43.478 0.00 0.00 0.00 3.16
207 208 3.687698 ACACGTAAATGTATGGGCTGTTC 59.312 43.478 0.00 0.00 0.00 3.18
208 209 3.064820 CACGTAAATGTATGGGCTGTTCC 59.935 47.826 0.00 0.00 0.00 3.62
209 210 3.054655 ACGTAAATGTATGGGCTGTTCCT 60.055 43.478 0.00 0.00 34.39 3.36
210 211 3.560068 CGTAAATGTATGGGCTGTTCCTC 59.440 47.826 0.00 0.00 34.39 3.71
211 212 4.683400 CGTAAATGTATGGGCTGTTCCTCT 60.683 45.833 0.00 0.00 34.39 3.69
212 213 4.322057 AAATGTATGGGCTGTTCCTCTT 57.678 40.909 0.00 0.00 34.39 2.85
213 214 5.450818 AAATGTATGGGCTGTTCCTCTTA 57.549 39.130 0.00 0.00 34.39 2.10
214 215 5.653255 AATGTATGGGCTGTTCCTCTTAT 57.347 39.130 0.00 0.00 34.39 1.73
215 216 6.763715 AATGTATGGGCTGTTCCTCTTATA 57.236 37.500 0.00 0.00 34.39 0.98
216 217 5.546621 TGTATGGGCTGTTCCTCTTATAC 57.453 43.478 0.00 0.00 34.39 1.47
217 218 4.966168 TGTATGGGCTGTTCCTCTTATACA 59.034 41.667 0.00 0.00 34.39 2.29
218 219 5.606749 TGTATGGGCTGTTCCTCTTATACAT 59.393 40.000 0.00 0.00 34.39 2.29
219 220 4.689612 TGGGCTGTTCCTCTTATACATC 57.310 45.455 0.00 0.00 34.39 3.06
220 221 3.391296 TGGGCTGTTCCTCTTATACATCC 59.609 47.826 0.00 0.00 34.39 3.51
221 222 3.648545 GGGCTGTTCCTCTTATACATCCT 59.351 47.826 0.00 0.00 30.75 3.24
222 223 4.103311 GGGCTGTTCCTCTTATACATCCTT 59.897 45.833 0.00 0.00 30.75 3.36
223 224 5.398012 GGGCTGTTCCTCTTATACATCCTTT 60.398 44.000 0.00 0.00 30.75 3.11
224 225 6.122964 GGCTGTTCCTCTTATACATCCTTTT 58.877 40.000 0.00 0.00 0.00 2.27
225 226 7.280356 GGCTGTTCCTCTTATACATCCTTTTA 58.720 38.462 0.00 0.00 0.00 1.52
226 227 7.939588 GGCTGTTCCTCTTATACATCCTTTTAT 59.060 37.037 0.00 0.00 0.00 1.40
227 228 9.998106 GCTGTTCCTCTTATACATCCTTTTATA 57.002 33.333 0.00 0.00 0.00 0.98
232 233 9.442062 TCCTCTTATACATCCTTTTATACACCA 57.558 33.333 0.00 0.00 0.00 4.17
244 245 9.303116 TCCTTTTATACACCATACAAAATGTGT 57.697 29.630 0.00 0.00 44.82 3.72
245 246 9.352784 CCTTTTATACACCATACAAAATGTGTG 57.647 33.333 4.51 0.81 41.89 3.82
248 249 4.503741 ACACCATACAAAATGTGTGAGC 57.496 40.909 8.56 0.00 41.24 4.26
249 250 3.888323 ACACCATACAAAATGTGTGAGCA 59.112 39.130 8.56 0.00 41.24 4.26
250 251 4.022935 ACACCATACAAAATGTGTGAGCAG 60.023 41.667 8.56 0.00 41.24 4.24
251 252 4.216042 CACCATACAAAATGTGTGAGCAGA 59.784 41.667 8.56 0.00 41.24 4.26
252 253 4.216257 ACCATACAAAATGTGTGAGCAGAC 59.784 41.667 8.56 0.00 41.24 3.51
253 254 4.456911 CCATACAAAATGTGTGAGCAGACT 59.543 41.667 8.56 0.00 41.24 3.24
254 255 5.048504 CCATACAAAATGTGTGAGCAGACTT 60.049 40.000 8.56 0.00 41.24 3.01
255 256 4.558538 ACAAAATGTGTGAGCAGACTTC 57.441 40.909 0.00 0.00 39.72 3.01
256 257 3.316308 ACAAAATGTGTGAGCAGACTTCC 59.684 43.478 0.00 0.00 39.72 3.46
257 258 3.498774 AAATGTGTGAGCAGACTTCCT 57.501 42.857 0.00 0.00 0.00 3.36
258 259 4.623932 AAATGTGTGAGCAGACTTCCTA 57.376 40.909 0.00 0.00 0.00 2.94
259 260 4.623932 AATGTGTGAGCAGACTTCCTAA 57.376 40.909 0.00 0.00 0.00 2.69
260 261 3.386768 TGTGTGAGCAGACTTCCTAAC 57.613 47.619 0.00 0.00 0.00 2.34
261 262 2.288213 TGTGTGAGCAGACTTCCTAACG 60.288 50.000 0.00 0.00 0.00 3.18
262 263 1.336887 TGTGAGCAGACTTCCTAACGC 60.337 52.381 0.00 0.00 0.00 4.84
263 264 0.246635 TGAGCAGACTTCCTAACGCC 59.753 55.000 0.00 0.00 0.00 5.68
264 265 0.460459 GAGCAGACTTCCTAACGCCC 60.460 60.000 0.00 0.00 0.00 6.13
265 266 1.192146 AGCAGACTTCCTAACGCCCA 61.192 55.000 0.00 0.00 0.00 5.36
266 267 1.019805 GCAGACTTCCTAACGCCCAC 61.020 60.000 0.00 0.00 0.00 4.61
267 268 0.320374 CAGACTTCCTAACGCCCACA 59.680 55.000 0.00 0.00 0.00 4.17
268 269 1.066143 CAGACTTCCTAACGCCCACAT 60.066 52.381 0.00 0.00 0.00 3.21
269 270 1.207329 AGACTTCCTAACGCCCACATC 59.793 52.381 0.00 0.00 0.00 3.06
270 271 1.207329 GACTTCCTAACGCCCACATCT 59.793 52.381 0.00 0.00 0.00 2.90
271 272 1.628846 ACTTCCTAACGCCCACATCTT 59.371 47.619 0.00 0.00 0.00 2.40
272 273 2.835764 ACTTCCTAACGCCCACATCTTA 59.164 45.455 0.00 0.00 0.00 2.10
273 274 3.454812 ACTTCCTAACGCCCACATCTTAT 59.545 43.478 0.00 0.00 0.00 1.73
274 275 4.080526 ACTTCCTAACGCCCACATCTTATT 60.081 41.667 0.00 0.00 0.00 1.40
275 276 5.129815 ACTTCCTAACGCCCACATCTTATTA 59.870 40.000 0.00 0.00 0.00 0.98
276 277 4.952460 TCCTAACGCCCACATCTTATTAC 58.048 43.478 0.00 0.00 0.00 1.89
277 278 4.406326 TCCTAACGCCCACATCTTATTACA 59.594 41.667 0.00 0.00 0.00 2.41
278 279 4.510340 CCTAACGCCCACATCTTATTACAC 59.490 45.833 0.00 0.00 0.00 2.90
279 280 3.906720 ACGCCCACATCTTATTACACT 57.093 42.857 0.00 0.00 0.00 3.55
280 281 4.216411 ACGCCCACATCTTATTACACTT 57.784 40.909 0.00 0.00 0.00 3.16
281 282 5.347620 ACGCCCACATCTTATTACACTTA 57.652 39.130 0.00 0.00 0.00 2.24
282 283 5.925509 ACGCCCACATCTTATTACACTTAT 58.074 37.500 0.00 0.00 0.00 1.73
283 284 5.989777 ACGCCCACATCTTATTACACTTATC 59.010 40.000 0.00 0.00 0.00 1.75
284 285 5.118664 CGCCCACATCTTATTACACTTATCG 59.881 44.000 0.00 0.00 0.00 2.92
285 286 5.408604 GCCCACATCTTATTACACTTATCGG 59.591 44.000 0.00 0.00 0.00 4.18
286 287 5.408604 CCCACATCTTATTACACTTATCGGC 59.591 44.000 0.00 0.00 0.00 5.54
287 288 5.118664 CCACATCTTATTACACTTATCGGCG 59.881 44.000 0.00 0.00 0.00 6.46
288 289 5.690409 CACATCTTATTACACTTATCGGCGT 59.310 40.000 6.85 0.00 0.00 5.68
289 290 5.919141 ACATCTTATTACACTTATCGGCGTC 59.081 40.000 6.85 0.00 0.00 5.19
295 296 5.520022 TTACACTTATCGGCGTCTTTTTC 57.480 39.130 6.85 0.00 0.00 2.29
530 539 2.202932 CGCCCCTCGATTCCACAG 60.203 66.667 0.00 0.00 41.67 3.66
531 540 2.514824 GCCCCTCGATTCCACAGC 60.515 66.667 0.00 0.00 0.00 4.40
532 541 2.989639 CCCCTCGATTCCACAGCA 59.010 61.111 0.00 0.00 0.00 4.41
534 543 0.745845 CCCCTCGATTCCACAGCAAG 60.746 60.000 0.00 0.00 0.00 4.01
535 544 1.372087 CCCTCGATTCCACAGCAAGC 61.372 60.000 0.00 0.00 0.00 4.01
536 545 0.674581 CCTCGATTCCACAGCAAGCA 60.675 55.000 0.00 0.00 0.00 3.91
537 546 0.445436 CTCGATTCCACAGCAAGCAC 59.555 55.000 0.00 0.00 0.00 4.40
538 547 0.955428 TCGATTCCACAGCAAGCACC 60.955 55.000 0.00 0.00 0.00 5.01
539 548 1.885871 GATTCCACAGCAAGCACCC 59.114 57.895 0.00 0.00 0.00 4.61
540 549 0.895100 GATTCCACAGCAAGCACCCA 60.895 55.000 0.00 0.00 0.00 4.51
541 550 0.469705 ATTCCACAGCAAGCACCCAA 60.470 50.000 0.00 0.00 0.00 4.12
542 551 1.391157 TTCCACAGCAAGCACCCAAC 61.391 55.000 0.00 0.00 0.00 3.77
543 552 2.126596 CCACAGCAAGCACCCAACA 61.127 57.895 0.00 0.00 0.00 3.33
544 553 1.066257 CACAGCAAGCACCCAACAC 59.934 57.895 0.00 0.00 0.00 3.32
547 556 4.645921 GCAAGCACCCAACACGCC 62.646 66.667 0.00 0.00 0.00 5.68
993 1101 1.363807 GGTGCTTGCTTGGGTGTTC 59.636 57.895 0.00 0.00 0.00 3.18
994 1102 1.391157 GGTGCTTGCTTGGGTGTTCA 61.391 55.000 0.00 0.00 0.00 3.18
995 1103 0.249031 GTGCTTGCTTGGGTGTTCAC 60.249 55.000 0.00 0.00 0.00 3.18
1041 1149 4.722700 CCCAGCCCCGTCAAGGTG 62.723 72.222 0.00 0.00 38.74 4.00
1117 1227 1.135315 TCATTGAATTGCTGCGCTTCC 60.135 47.619 9.73 0.00 0.00 3.46
1120 1230 1.138247 GAATTGCTGCGCTTCCCTG 59.862 57.895 9.73 0.00 0.00 4.45
1333 1443 7.012421 AGCTTGTATCCCGAACTGAATAAAATC 59.988 37.037 0.00 0.00 0.00 2.17
1348 1458 8.433421 TGAATAAAATCGGGATTCAACTAGTC 57.567 34.615 0.00 0.00 36.81 2.59
1350 1460 8.980481 AATAAAATCGGGATTCAACTAGTCAT 57.020 30.769 0.00 0.00 0.00 3.06
1360 1473 8.519526 GGGATTCAACTAGTCATAGTAGATCTG 58.480 40.741 5.18 0.00 41.54 2.90
1401 1514 0.034896 CCTAGCGTGGGAGTGTTGTT 59.965 55.000 0.00 0.00 0.00 2.83
1491 1606 6.469782 AGGTATTTTATCGACCTTTACCGA 57.530 37.500 0.00 0.00 40.85 4.69
1492 1607 6.276091 AGGTATTTTATCGACCTTTACCGAC 58.724 40.000 0.00 0.00 40.85 4.79
1497 1612 0.540365 TCGACCTTTACCGACCCACT 60.540 55.000 0.00 0.00 0.00 4.00
1498 1613 0.319405 CGACCTTTACCGACCCACTT 59.681 55.000 0.00 0.00 0.00 3.16
1499 1614 1.804601 GACCTTTACCGACCCACTTG 58.195 55.000 0.00 0.00 0.00 3.16
1511 1629 6.285990 ACCGACCCACTTGTGATTATAATAC 58.714 40.000 0.00 0.00 0.00 1.89
1559 1677 2.256174 CATGTTGTACGGTCGTGTAGG 58.744 52.381 6.25 0.00 0.00 3.18
1566 1684 0.379669 ACGGTCGTGTAGGATTAGCG 59.620 55.000 0.00 0.00 37.12 4.26
1593 1711 2.508663 GTACTCGCAGTTCCGGGC 60.509 66.667 0.00 0.00 30.09 6.13
1611 1729 0.376852 GCACGGCATTGCTATTCGAA 59.623 50.000 8.82 0.00 39.59 3.71
1615 1733 3.725740 CACGGCATTGCTATTCGAATTTC 59.274 43.478 17.19 8.99 0.00 2.17
1617 1735 3.003689 CGGCATTGCTATTCGAATTTCCT 59.996 43.478 17.19 0.00 0.00 3.36
1620 1738 5.232838 GGCATTGCTATTCGAATTTCCTTTG 59.767 40.000 17.19 8.76 0.00 2.77
1763 1881 8.396272 ACATAAAATTTACTGCTGTCAGAACT 57.604 30.769 3.32 0.00 42.95 3.01
1764 1882 8.292448 ACATAAAATTTACTGCTGTCAGAACTG 58.708 33.333 3.32 0.00 42.95 3.16
1778 1896 6.345298 TGTCAGAACTGAGAACAATTGTGTA 58.655 36.000 12.82 0.00 40.75 2.90
1779 1897 6.992123 TGTCAGAACTGAGAACAATTGTGTAT 59.008 34.615 12.82 0.63 40.75 2.29
1780 1898 7.041848 TGTCAGAACTGAGAACAATTGTGTATG 60.042 37.037 12.82 8.02 40.75 2.39
1784 1902 8.103305 AGAACTGAGAACAATTGTGTATGGTAT 58.897 33.333 12.82 0.00 36.80 2.73
1789 1907 9.952030 TGAGAACAATTGTGTATGGTATCTAAA 57.048 29.630 12.82 0.00 36.80 1.85
1794 1912 9.189156 ACAATTGTGTATGGTATCTAAATGCTT 57.811 29.630 11.07 0.00 35.72 3.91
1795 1913 9.454585 CAATTGTGTATGGTATCTAAATGCTTG 57.545 33.333 0.00 0.00 0.00 4.01
1796 1914 6.618287 TGTGTATGGTATCTAAATGCTTGC 57.382 37.500 0.00 0.00 0.00 4.01
1804 1922 5.125417 GGTATCTAAATGCTTGCAGTGGAAA 59.875 40.000 0.00 0.00 0.00 3.13
1827 1946 7.516198 AACTTATGATGGCATATTTGACCTC 57.484 36.000 0.00 0.00 36.89 3.85
1831 1950 9.458727 CTTATGATGGCATATTTGACCTCTAAT 57.541 33.333 0.00 0.00 36.89 1.73
1833 1952 7.750229 TGATGGCATATTTGACCTCTAATTC 57.250 36.000 0.00 0.00 0.00 2.17
1920 2039 4.401925 AGTTGAGTGCCAAGCTTATCTTT 58.598 39.130 0.00 0.00 35.03 2.52
1947 2066 4.142469 GCTGACAGGTGTGTTTGTTAAACT 60.142 41.667 4.26 0.00 41.90 2.66
2024 2144 9.816787 AAAATTGTCTAATTAAAGTACCTCCCA 57.183 29.630 0.00 0.00 35.50 4.37
2168 2289 6.071320 AGCTTTTCTTGTCTCCTTTATTGGT 58.929 36.000 0.00 0.00 0.00 3.67
2169 2290 6.551227 AGCTTTTCTTGTCTCCTTTATTGGTT 59.449 34.615 0.00 0.00 0.00 3.67
2192 2313 6.729391 TGCTAGACGTAATTGCATTGTTTA 57.271 33.333 5.48 0.00 0.00 2.01
2397 2518 4.986034 TGTGCTCAATTTGCAATTTCAGAG 59.014 37.500 8.87 11.42 42.41 3.35
2400 2521 4.624452 GCTCAATTTGCAATTTCAGAGGAC 59.376 41.667 8.87 0.00 0.00 3.85
2434 2555 4.567159 CACTTCTACTGGATCGTTTTAGGC 59.433 45.833 0.00 0.00 0.00 3.93
2486 2607 2.232452 GCTGCAGGACTCTTAGAAGACA 59.768 50.000 17.12 0.00 0.00 3.41
2798 2919 2.242043 CCTGTGAAGGGATTTGCAAGT 58.758 47.619 0.00 0.00 0.00 3.16
3269 3390 7.564793 TGTGTCATACATAAGAGGCTGTATTT 58.435 34.615 0.00 0.00 36.64 1.40
3307 3428 9.748708 TTTCATTTTATTGAGTTGTTTGAGGAG 57.251 29.630 0.00 0.00 0.00 3.69
3315 3436 4.130118 GAGTTGTTTGAGGAGCTGAAAGA 58.870 43.478 0.00 0.00 34.07 2.52
3769 3891 8.767478 AATGGCTTTTTCAGTCTCATAATTTG 57.233 30.769 0.00 0.00 0.00 2.32
3918 4067 7.440523 AGCAAAATCTGATAAATATCCGACC 57.559 36.000 0.00 0.00 30.51 4.79
3919 4068 7.227156 AGCAAAATCTGATAAATATCCGACCT 58.773 34.615 0.00 0.00 30.51 3.85
3920 4069 7.389053 AGCAAAATCTGATAAATATCCGACCTC 59.611 37.037 0.00 0.00 30.51 3.85
3921 4070 7.361286 GCAAAATCTGATAAATATCCGACCTCC 60.361 40.741 0.00 0.00 30.51 4.30
3922 4071 7.560796 AAATCTGATAAATATCCGACCTCCT 57.439 36.000 0.00 0.00 30.51 3.69
3923 4072 8.666129 AAATCTGATAAATATCCGACCTCCTA 57.334 34.615 0.00 0.00 30.51 2.94
3924 4073 8.846423 AATCTGATAAATATCCGACCTCCTAT 57.154 34.615 0.00 0.00 30.51 2.57
3925 4074 9.937876 AATCTGATAAATATCCGACCTCCTATA 57.062 33.333 0.00 0.00 30.51 1.31
3927 4076 9.937876 TCTGATAAATATCCGACCTCCTATATT 57.062 33.333 0.00 0.00 31.71 1.28
3935 4084 6.748333 TCCGACCTCCTATATTTGTATACG 57.252 41.667 0.00 0.00 0.00 3.06
3936 4085 5.649395 TCCGACCTCCTATATTTGTATACGG 59.351 44.000 0.00 0.00 36.27 4.02
3937 4086 5.416952 CCGACCTCCTATATTTGTATACGGT 59.583 44.000 0.00 0.00 0.00 4.83
3938 4087 6.071728 CCGACCTCCTATATTTGTATACGGTT 60.072 42.308 0.00 0.00 0.00 4.44
3939 4088 7.373493 CGACCTCCTATATTTGTATACGGTTT 58.627 38.462 0.00 0.00 0.00 3.27
3940 4089 8.514594 CGACCTCCTATATTTGTATACGGTTTA 58.485 37.037 0.00 0.00 0.00 2.01
4034 4183 5.926542 TCTGAAGTTCATGTAGTGCACTAAC 59.073 40.000 27.61 22.11 32.96 2.34
4056 4205 0.613260 TTCTGGTTCAGGTCCATCGG 59.387 55.000 0.00 0.00 34.26 4.18
4086 4235 8.470040 CAAGTTATGGATGTTCAATCTTTTGG 57.530 34.615 0.00 0.00 33.44 3.28
4098 4247 8.141268 TGTTCAATCTTTTGGTCCATTTCTTAC 58.859 33.333 0.00 0.00 33.44 2.34
4111 4260 9.495572 GGTCCATTTCTTACTAATTCCTCTATG 57.504 37.037 0.00 0.00 0.00 2.23
4226 4375 4.973168 TCAACAGTGATCAAGTAGCCTTT 58.027 39.130 0.00 0.00 0.00 3.11
4377 4594 9.355215 ACTGTTCATTTACATTTAGTAGACTCG 57.645 33.333 0.00 0.00 33.43 4.18
4378 4595 9.569167 CTGTTCATTTACATTTAGTAGACTCGA 57.431 33.333 0.00 0.00 33.43 4.04
4476 4699 1.837789 CAGGAGGATCAGCATGGCT 59.162 57.895 0.00 0.00 40.77 4.75
4567 4790 3.182887 TGATAACATTGCAACCCCCTT 57.817 42.857 0.00 0.00 0.00 3.95
4570 4793 1.184970 AACATTGCAACCCCCTTCCG 61.185 55.000 0.00 0.00 0.00 4.30
4668 4894 9.247861 AGAATTTGCCTTGTAGACTCATTAAAT 57.752 29.630 0.00 0.00 0.00 1.40
4677 4903 9.318041 CTTGTAGACTCATTAAATTTGTTGTCG 57.682 33.333 0.00 0.00 0.00 4.35
4727 4953 9.627123 TTAAAGATTATGGTGATTTCGAATCCT 57.373 29.630 0.00 0.00 0.00 3.24
4791 5018 1.801178 GGTATTTATCCTGCAGCGCTC 59.199 52.381 7.13 2.98 0.00 5.03
4835 5062 4.095483 AGCTAATGTTTGTGAGCTGTATGC 59.905 41.667 0.00 0.00 43.53 3.14
4856 5083 2.591133 GCGTTTTCGGTTGTTGCATAT 58.409 42.857 0.00 0.00 44.29 1.78
5526 5912 0.034198 TCTTTTGACGCCGTCCATGA 59.966 50.000 15.60 6.42 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.994201 TGACAGTCACCGCGCGTC 62.994 66.667 29.95 17.85 0.00 5.19
39 40 4.436998 CTCGCACCTCGTGGTCCC 62.437 72.222 6.10 0.00 46.60 4.46
40 41 4.436998 CCTCGCACCTCGTGGTCC 62.437 72.222 6.10 0.00 46.60 4.46
44 45 1.080093 TTAAGCCTCGCACCTCGTG 60.080 57.895 0.00 0.00 39.67 4.35
45 46 1.080025 GTTAAGCCTCGCACCTCGT 60.080 57.895 0.00 0.00 39.67 4.18
46 47 2.158959 CGTTAAGCCTCGCACCTCG 61.159 63.158 0.00 0.00 40.15 4.63
47 48 0.171903 TACGTTAAGCCTCGCACCTC 59.828 55.000 0.00 0.00 0.00 3.85
48 49 0.108945 GTACGTTAAGCCTCGCACCT 60.109 55.000 0.00 0.00 0.00 4.00
49 50 1.408474 CGTACGTTAAGCCTCGCACC 61.408 60.000 7.22 0.00 0.00 5.01
50 51 1.408474 CCGTACGTTAAGCCTCGCAC 61.408 60.000 15.21 0.00 0.00 5.34
51 52 1.153978 CCGTACGTTAAGCCTCGCA 60.154 57.895 15.21 0.00 0.00 5.10
52 53 1.875364 CCCGTACGTTAAGCCTCGC 60.875 63.158 15.21 0.00 0.00 5.03
53 54 1.226773 CCCCGTACGTTAAGCCTCG 60.227 63.158 15.21 0.00 0.00 4.63
54 55 1.520120 GCCCCGTACGTTAAGCCTC 60.520 63.158 15.21 0.00 0.00 4.70
55 56 2.580815 GCCCCGTACGTTAAGCCT 59.419 61.111 15.21 0.00 0.00 4.58
56 57 2.887086 CGCCCCGTACGTTAAGCC 60.887 66.667 15.21 0.00 0.00 4.35
57 58 2.125952 ACGCCCCGTACGTTAAGC 60.126 61.111 15.21 9.93 41.93 3.09
58 59 1.080569 ACACGCCCCGTACGTTAAG 60.081 57.895 15.21 5.56 42.96 1.85
59 60 1.372748 CACACGCCCCGTACGTTAA 60.373 57.895 15.21 0.00 42.96 2.01
60 61 2.257980 CACACGCCCCGTACGTTA 59.742 61.111 15.21 0.00 42.96 3.18
61 62 4.668118 CCACACGCCCCGTACGTT 62.668 66.667 15.21 0.00 42.96 3.99
64 65 2.855880 TAATGCCACACGCCCCGTAC 62.856 60.000 0.00 0.00 38.32 3.67
65 66 1.973816 ATAATGCCACACGCCCCGTA 61.974 55.000 0.00 0.00 38.32 4.02
66 67 3.338275 ATAATGCCACACGCCCCGT 62.338 57.895 0.00 0.00 42.36 5.28
67 68 2.515991 ATAATGCCACACGCCCCG 60.516 61.111 0.00 0.00 36.24 5.73
68 69 0.107831 TAGATAATGCCACACGCCCC 59.892 55.000 0.00 0.00 36.24 5.80
69 70 2.185004 ATAGATAATGCCACACGCCC 57.815 50.000 0.00 0.00 36.24 6.13
70 71 3.363970 CGAAATAGATAATGCCACACGCC 60.364 47.826 0.00 0.00 36.24 5.68
71 72 3.799035 CGAAATAGATAATGCCACACGC 58.201 45.455 0.00 0.00 38.31 5.34
72 73 3.363970 GGCGAAATAGATAATGCCACACG 60.364 47.826 0.00 0.00 42.03 4.49
73 74 3.058224 GGGCGAAATAGATAATGCCACAC 60.058 47.826 3.24 0.00 44.21 3.82
74 75 3.146066 GGGCGAAATAGATAATGCCACA 58.854 45.455 3.24 0.00 44.21 4.17
75 76 3.058224 GTGGGCGAAATAGATAATGCCAC 60.058 47.826 3.24 0.00 44.21 5.01
76 77 3.146066 GTGGGCGAAATAGATAATGCCA 58.854 45.455 3.24 0.00 44.21 4.92
77 78 3.058224 GTGTGGGCGAAATAGATAATGCC 60.058 47.826 0.00 0.00 41.72 4.40
78 79 3.363970 CGTGTGGGCGAAATAGATAATGC 60.364 47.826 0.00 0.00 0.00 3.56
79 80 3.363970 GCGTGTGGGCGAAATAGATAATG 60.364 47.826 0.00 0.00 0.00 1.90
80 81 2.806244 GCGTGTGGGCGAAATAGATAAT 59.194 45.455 0.00 0.00 0.00 1.28
81 82 2.206750 GCGTGTGGGCGAAATAGATAA 58.793 47.619 0.00 0.00 0.00 1.75
82 83 1.137282 TGCGTGTGGGCGAAATAGATA 59.863 47.619 0.00 0.00 35.06 1.98
83 84 0.107897 TGCGTGTGGGCGAAATAGAT 60.108 50.000 0.00 0.00 35.06 1.98
84 85 1.017177 GTGCGTGTGGGCGAAATAGA 61.017 55.000 0.00 0.00 35.06 1.98
85 86 1.423845 GTGCGTGTGGGCGAAATAG 59.576 57.895 0.00 0.00 35.06 1.73
86 87 2.384309 CGTGCGTGTGGGCGAAATA 61.384 57.895 0.00 0.00 35.06 1.40
87 88 3.722295 CGTGCGTGTGGGCGAAAT 61.722 61.111 0.00 0.00 35.06 2.17
100 101 3.649277 ATCCCTCTCACACGCGTGC 62.649 63.158 37.35 0.00 43.28 5.34
101 102 1.517257 GATCCCTCTCACACGCGTG 60.517 63.158 35.99 35.99 45.08 5.34
102 103 2.885861 GATCCCTCTCACACGCGT 59.114 61.111 5.58 5.58 0.00 6.01
103 104 2.278206 CGATCCCTCTCACACGCG 60.278 66.667 3.53 3.53 0.00 6.01
104 105 1.064946 CTCGATCCCTCTCACACGC 59.935 63.158 0.00 0.00 0.00 5.34
105 106 1.095600 TTCTCGATCCCTCTCACACG 58.904 55.000 0.00 0.00 0.00 4.49
106 107 3.594603 TTTTCTCGATCCCTCTCACAC 57.405 47.619 0.00 0.00 0.00 3.82
125 126 2.086610 ATGCCCACACACCTCTTTTT 57.913 45.000 0.00 0.00 0.00 1.94
126 127 2.086610 AATGCCCACACACCTCTTTT 57.913 45.000 0.00 0.00 0.00 2.27
127 128 2.108250 AGTAATGCCCACACACCTCTTT 59.892 45.455 0.00 0.00 0.00 2.52
128 129 1.705186 AGTAATGCCCACACACCTCTT 59.295 47.619 0.00 0.00 0.00 2.85
129 130 1.362224 AGTAATGCCCACACACCTCT 58.638 50.000 0.00 0.00 0.00 3.69
130 131 1.812571 CAAGTAATGCCCACACACCTC 59.187 52.381 0.00 0.00 0.00 3.85
131 132 1.144913 ACAAGTAATGCCCACACACCT 59.855 47.619 0.00 0.00 0.00 4.00
132 133 1.616159 ACAAGTAATGCCCACACACC 58.384 50.000 0.00 0.00 0.00 4.16
133 134 3.726291 AAACAAGTAATGCCCACACAC 57.274 42.857 0.00 0.00 0.00 3.82
134 135 4.744795 AAAAACAAGTAATGCCCACACA 57.255 36.364 0.00 0.00 0.00 3.72
153 154 4.888326 AGTAATGCCCAATGCTCAAAAA 57.112 36.364 0.00 0.00 42.00 1.94
154 155 4.040217 ACAAGTAATGCCCAATGCTCAAAA 59.960 37.500 0.00 0.00 42.00 2.44
155 156 3.577848 ACAAGTAATGCCCAATGCTCAAA 59.422 39.130 0.00 0.00 42.00 2.69
156 157 3.164268 ACAAGTAATGCCCAATGCTCAA 58.836 40.909 0.00 0.00 42.00 3.02
157 158 2.806434 ACAAGTAATGCCCAATGCTCA 58.194 42.857 0.00 0.00 42.00 4.26
158 159 3.874392 AACAAGTAATGCCCAATGCTC 57.126 42.857 0.00 0.00 42.00 4.26
159 160 4.202346 ACAAAACAAGTAATGCCCAATGCT 60.202 37.500 0.00 0.00 42.00 3.79
160 161 4.064388 ACAAAACAAGTAATGCCCAATGC 58.936 39.130 0.00 0.00 41.77 3.56
161 162 4.690280 GGACAAAACAAGTAATGCCCAATG 59.310 41.667 0.00 0.00 0.00 2.82
162 163 4.346418 TGGACAAAACAAGTAATGCCCAAT 59.654 37.500 0.00 0.00 0.00 3.16
163 164 3.706594 TGGACAAAACAAGTAATGCCCAA 59.293 39.130 0.00 0.00 0.00 4.12
164 165 3.068873 GTGGACAAAACAAGTAATGCCCA 59.931 43.478 0.00 0.00 0.00 5.36
165 166 3.068873 TGTGGACAAAACAAGTAATGCCC 59.931 43.478 0.00 0.00 0.00 5.36
166 167 4.048504 GTGTGGACAAAACAAGTAATGCC 58.951 43.478 0.00 0.00 0.00 4.40
167 168 3.728718 CGTGTGGACAAAACAAGTAATGC 59.271 43.478 0.00 0.00 0.00 3.56
168 169 4.915704 ACGTGTGGACAAAACAAGTAATG 58.084 39.130 0.00 0.00 38.27 1.90
169 170 6.680874 TTACGTGTGGACAAAACAAGTAAT 57.319 33.333 0.00 0.00 43.08 1.89
170 171 6.492007 TTTACGTGTGGACAAAACAAGTAA 57.508 33.333 0.00 9.85 44.85 2.24
171 172 6.093771 ACATTTACGTGTGGACAAAACAAGTA 59.906 34.615 0.00 0.00 40.14 2.24
172 173 5.106078 ACATTTACGTGTGGACAAAACAAGT 60.106 36.000 0.00 1.14 41.91 3.16
173 174 5.336744 ACATTTACGTGTGGACAAAACAAG 58.663 37.500 0.00 0.00 33.85 3.16
174 175 5.312120 ACATTTACGTGTGGACAAAACAA 57.688 34.783 0.00 0.00 0.00 2.83
175 176 4.966965 ACATTTACGTGTGGACAAAACA 57.033 36.364 0.00 0.00 0.00 2.83
176 177 6.904954 CATACATTTACGTGTGGACAAAAC 57.095 37.500 0.00 0.00 33.62 2.43
183 184 2.354510 CAGCCCATACATTTACGTGTGG 59.645 50.000 0.00 0.00 45.15 4.17
184 185 3.006940 ACAGCCCATACATTTACGTGTG 58.993 45.455 0.00 0.00 33.62 3.82
185 186 3.343941 ACAGCCCATACATTTACGTGT 57.656 42.857 0.00 0.00 36.13 4.49
186 187 3.064820 GGAACAGCCCATACATTTACGTG 59.935 47.826 0.00 0.00 0.00 4.49
187 188 3.054655 AGGAACAGCCCATACATTTACGT 60.055 43.478 0.00 0.00 37.37 3.57
188 189 3.541632 AGGAACAGCCCATACATTTACG 58.458 45.455 0.00 0.00 37.37 3.18
189 190 4.781934 AGAGGAACAGCCCATACATTTAC 58.218 43.478 0.00 0.00 37.37 2.01
190 191 5.450818 AAGAGGAACAGCCCATACATTTA 57.549 39.130 0.00 0.00 37.37 1.40
191 192 4.322057 AAGAGGAACAGCCCATACATTT 57.678 40.909 0.00 0.00 37.37 2.32
192 193 5.653255 ATAAGAGGAACAGCCCATACATT 57.347 39.130 0.00 0.00 37.37 2.71
193 194 5.606749 TGTATAAGAGGAACAGCCCATACAT 59.393 40.000 0.00 0.00 37.37 2.29
194 195 4.966168 TGTATAAGAGGAACAGCCCATACA 59.034 41.667 0.00 0.00 37.37 2.29
195 196 5.546621 TGTATAAGAGGAACAGCCCATAC 57.453 43.478 0.00 0.00 37.37 2.39
196 197 5.248477 GGATGTATAAGAGGAACAGCCCATA 59.752 44.000 0.00 0.00 42.49 2.74
197 198 4.042187 GGATGTATAAGAGGAACAGCCCAT 59.958 45.833 0.00 0.00 42.49 4.00
198 199 3.391296 GGATGTATAAGAGGAACAGCCCA 59.609 47.826 0.00 0.00 42.49 5.36
199 200 4.009370 GGATGTATAAGAGGAACAGCCC 57.991 50.000 0.00 0.00 42.49 5.19
201 202 8.910351 ATAAAAGGATGTATAAGAGGAACAGC 57.090 34.615 0.00 0.00 0.00 4.40
206 207 9.442062 TGGTGTATAAAAGGATGTATAAGAGGA 57.558 33.333 0.00 0.00 0.00 3.71
218 219 9.303116 ACACATTTTGTATGGTGTATAAAAGGA 57.697 29.630 8.09 0.00 42.24 3.36
219 220 9.352784 CACACATTTTGTATGGTGTATAAAAGG 57.647 33.333 0.00 0.00 42.16 3.11
222 223 8.240682 GCTCACACATTTTGTATGGTGTATAAA 58.759 33.333 0.00 0.00 42.16 1.40
223 224 7.391833 TGCTCACACATTTTGTATGGTGTATAA 59.608 33.333 0.00 0.00 42.16 0.98
224 225 6.881602 TGCTCACACATTTTGTATGGTGTATA 59.118 34.615 0.00 0.00 42.16 1.47
225 226 5.709631 TGCTCACACATTTTGTATGGTGTAT 59.290 36.000 0.00 0.00 42.16 2.29
226 227 5.066593 TGCTCACACATTTTGTATGGTGTA 58.933 37.500 0.00 0.00 42.16 2.90
227 228 3.888323 TGCTCACACATTTTGTATGGTGT 59.112 39.130 0.00 0.00 44.69 4.16
228 229 4.216042 TCTGCTCACACATTTTGTATGGTG 59.784 41.667 0.00 0.00 35.67 4.17
229 230 4.216257 GTCTGCTCACACATTTTGTATGGT 59.784 41.667 0.00 0.00 35.67 3.55
230 231 4.456911 AGTCTGCTCACACATTTTGTATGG 59.543 41.667 0.00 0.00 35.67 2.74
231 232 5.618056 AGTCTGCTCACACATTTTGTATG 57.382 39.130 0.00 0.00 35.67 2.39
232 233 5.182001 GGAAGTCTGCTCACACATTTTGTAT 59.818 40.000 0.00 0.00 35.67 2.29
233 234 4.515191 GGAAGTCTGCTCACACATTTTGTA 59.485 41.667 0.00 0.00 35.67 2.41
234 235 3.316308 GGAAGTCTGCTCACACATTTTGT 59.684 43.478 0.00 0.00 39.97 2.83
235 236 3.567164 AGGAAGTCTGCTCACACATTTTG 59.433 43.478 0.00 0.00 0.00 2.44
236 237 3.825328 AGGAAGTCTGCTCACACATTTT 58.175 40.909 0.00 0.00 0.00 1.82
237 238 3.498774 AGGAAGTCTGCTCACACATTT 57.501 42.857 0.00 0.00 0.00 2.32
238 239 4.319177 GTTAGGAAGTCTGCTCACACATT 58.681 43.478 0.00 0.00 0.00 2.71
239 240 3.615110 CGTTAGGAAGTCTGCTCACACAT 60.615 47.826 0.00 0.00 0.00 3.21
240 241 2.288213 CGTTAGGAAGTCTGCTCACACA 60.288 50.000 0.00 0.00 0.00 3.72
241 242 2.329379 CGTTAGGAAGTCTGCTCACAC 58.671 52.381 0.00 0.00 0.00 3.82
242 243 1.336887 GCGTTAGGAAGTCTGCTCACA 60.337 52.381 0.00 0.00 0.00 3.58
243 244 1.351153 GCGTTAGGAAGTCTGCTCAC 58.649 55.000 0.00 0.00 0.00 3.51
244 245 0.246635 GGCGTTAGGAAGTCTGCTCA 59.753 55.000 0.00 0.00 0.00 4.26
245 246 0.460459 GGGCGTTAGGAAGTCTGCTC 60.460 60.000 0.00 0.00 0.00 4.26
246 247 1.192146 TGGGCGTTAGGAAGTCTGCT 61.192 55.000 0.00 0.00 0.00 4.24
247 248 1.019805 GTGGGCGTTAGGAAGTCTGC 61.020 60.000 0.00 0.00 0.00 4.26
248 249 0.320374 TGTGGGCGTTAGGAAGTCTG 59.680 55.000 0.00 0.00 0.00 3.51
249 250 1.207329 GATGTGGGCGTTAGGAAGTCT 59.793 52.381 0.00 0.00 0.00 3.24
250 251 1.207329 AGATGTGGGCGTTAGGAAGTC 59.793 52.381 0.00 0.00 0.00 3.01
251 252 1.276622 AGATGTGGGCGTTAGGAAGT 58.723 50.000 0.00 0.00 0.00 3.01
252 253 2.403252 AAGATGTGGGCGTTAGGAAG 57.597 50.000 0.00 0.00 0.00 3.46
253 254 4.497291 AATAAGATGTGGGCGTTAGGAA 57.503 40.909 0.00 0.00 0.00 3.36
254 255 4.406326 TGTAATAAGATGTGGGCGTTAGGA 59.594 41.667 0.00 0.00 0.00 2.94
255 256 4.510340 GTGTAATAAGATGTGGGCGTTAGG 59.490 45.833 0.00 0.00 0.00 2.69
256 257 5.357257 AGTGTAATAAGATGTGGGCGTTAG 58.643 41.667 0.00 0.00 0.00 2.34
257 258 5.347620 AGTGTAATAAGATGTGGGCGTTA 57.652 39.130 0.00 0.00 0.00 3.18
258 259 4.216411 AGTGTAATAAGATGTGGGCGTT 57.784 40.909 0.00 0.00 0.00 4.84
259 260 3.906720 AGTGTAATAAGATGTGGGCGT 57.093 42.857 0.00 0.00 0.00 5.68
260 261 5.118664 CGATAAGTGTAATAAGATGTGGGCG 59.881 44.000 0.00 0.00 0.00 6.13
261 262 5.408604 CCGATAAGTGTAATAAGATGTGGGC 59.591 44.000 0.00 0.00 0.00 5.36
262 263 5.408604 GCCGATAAGTGTAATAAGATGTGGG 59.591 44.000 0.00 0.00 0.00 4.61
263 264 5.118664 CGCCGATAAGTGTAATAAGATGTGG 59.881 44.000 0.00 0.00 0.00 4.17
264 265 5.690409 ACGCCGATAAGTGTAATAAGATGTG 59.310 40.000 0.00 0.00 0.00 3.21
265 266 5.839621 ACGCCGATAAGTGTAATAAGATGT 58.160 37.500 0.00 0.00 0.00 3.06
266 267 6.150318 AGACGCCGATAAGTGTAATAAGATG 58.850 40.000 0.00 0.00 0.00 2.90
267 268 6.328641 AGACGCCGATAAGTGTAATAAGAT 57.671 37.500 0.00 0.00 0.00 2.40
268 269 5.762825 AGACGCCGATAAGTGTAATAAGA 57.237 39.130 0.00 0.00 0.00 2.10
269 270 6.823678 AAAGACGCCGATAAGTGTAATAAG 57.176 37.500 0.00 0.00 0.00 1.73
270 271 7.201548 GGAAAAAGACGCCGATAAGTGTAATAA 60.202 37.037 0.00 0.00 0.00 1.40
271 272 6.256321 GGAAAAAGACGCCGATAAGTGTAATA 59.744 38.462 0.00 0.00 0.00 0.98
272 273 5.064325 GGAAAAAGACGCCGATAAGTGTAAT 59.936 40.000 0.00 0.00 0.00 1.89
273 274 4.389687 GGAAAAAGACGCCGATAAGTGTAA 59.610 41.667 0.00 0.00 0.00 2.41
274 275 3.928375 GGAAAAAGACGCCGATAAGTGTA 59.072 43.478 0.00 0.00 0.00 2.90
275 276 2.740447 GGAAAAAGACGCCGATAAGTGT 59.260 45.455 0.00 0.00 0.00 3.55
276 277 3.000727 AGGAAAAAGACGCCGATAAGTG 58.999 45.455 0.00 0.00 0.00 3.16
277 278 3.329929 AGGAAAAAGACGCCGATAAGT 57.670 42.857 0.00 0.00 0.00 2.24
278 279 5.107133 TCTTAGGAAAAAGACGCCGATAAG 58.893 41.667 0.00 0.00 30.54 1.73
279 280 5.075858 TCTTAGGAAAAAGACGCCGATAA 57.924 39.130 0.00 0.00 30.54 1.75
280 281 4.724074 TCTTAGGAAAAAGACGCCGATA 57.276 40.909 0.00 0.00 30.54 2.92
281 282 3.604875 TCTTAGGAAAAAGACGCCGAT 57.395 42.857 0.00 0.00 30.54 4.18
282 283 3.389925 TTCTTAGGAAAAAGACGCCGA 57.610 42.857 0.00 0.00 35.25 5.54
283 284 4.477302 TTTTCTTAGGAAAAAGACGCCG 57.523 40.909 10.07 0.00 45.07 6.46
295 296 7.767198 TGTGGGTCGTATTCTATTTTTCTTAGG 59.233 37.037 0.00 0.00 0.00 2.69
448 457 3.736732 TATAAACGGCGGGCGGGTG 62.737 63.158 27.66 0.40 0.00 4.61
449 458 3.450043 CTATAAACGGCGGGCGGGT 62.450 63.158 27.66 16.74 0.00 5.28
530 539 4.645921 GGCGTGTTGGGTGCTTGC 62.646 66.667 0.00 0.00 0.00 4.01
531 540 4.326766 CGGCGTGTTGGGTGCTTG 62.327 66.667 0.00 0.00 0.00 4.01
1117 1227 0.907486 TCCAGCTCTGATCCAACAGG 59.093 55.000 0.00 0.00 38.31 4.00
1120 1230 3.376546 GTCAAATCCAGCTCTGATCCAAC 59.623 47.826 0.00 0.00 0.00 3.77
1152 1262 1.124780 TCCTGACTCGGACCAAAACA 58.875 50.000 0.00 0.00 0.00 2.83
1333 1443 6.879276 TCTACTATGACTAGTTGAATCCCG 57.121 41.667 0.00 0.00 36.97 5.14
1360 1473 7.222000 AGGACGAGTATTTTATCCAGAGATC 57.778 40.000 0.00 0.00 33.67 2.75
1362 1475 6.207025 GCTAGGACGAGTATTTTATCCAGAGA 59.793 42.308 0.00 0.00 31.41 3.10
1401 1514 7.762615 CGATCTACTAACAAAAGGATACCAACA 59.237 37.037 0.00 0.00 37.17 3.33
1479 1594 0.319405 AAGTGGGTCGGTAAAGGTCG 59.681 55.000 0.00 0.00 0.00 4.79
1511 1629 7.545615 GGAAACCAGTAAAATAGCCTGAAAATG 59.454 37.037 0.00 0.00 0.00 2.32
1559 1677 4.278058 GAGTACAACTACGTCCGCTAATC 58.722 47.826 0.00 0.00 0.00 1.75
1566 1684 1.198637 ACTGCGAGTACAACTACGTCC 59.801 52.381 0.00 0.00 0.00 4.79
1593 1711 3.338818 AATTCGAATAGCAATGCCGTG 57.661 42.857 11.83 0.00 0.00 4.94
1600 1718 5.627172 CGACAAAGGAAATTCGAATAGCAA 58.373 37.500 11.83 0.00 33.20 3.91
1611 1729 5.548406 ACTGTAACTAGCGACAAAGGAAAT 58.452 37.500 0.00 0.00 0.00 2.17
1615 1733 9.909644 AATATATACTGTAACTAGCGACAAAGG 57.090 33.333 0.00 0.00 0.00 3.11
1744 1862 5.858381 TCTCAGTTCTGACAGCAGTAAATT 58.142 37.500 0.00 0.00 42.84 1.82
1757 1875 6.205464 ACCATACACAATTGTTCTCAGTTCTG 59.795 38.462 8.77 5.13 37.15 3.02
1758 1876 6.299141 ACCATACACAATTGTTCTCAGTTCT 58.701 36.000 8.77 0.00 37.15 3.01
1759 1877 6.560253 ACCATACACAATTGTTCTCAGTTC 57.440 37.500 8.77 0.00 37.15 3.01
1760 1878 8.103305 AGATACCATACACAATTGTTCTCAGTT 58.897 33.333 8.77 0.00 37.15 3.16
1761 1879 7.624549 AGATACCATACACAATTGTTCTCAGT 58.375 34.615 8.77 6.05 37.15 3.41
1762 1880 9.599866 TTAGATACCATACACAATTGTTCTCAG 57.400 33.333 8.77 0.00 37.15 3.35
1763 1881 9.952030 TTTAGATACCATACACAATTGTTCTCA 57.048 29.630 8.77 0.00 37.15 3.27
1778 1896 4.581824 CCACTGCAAGCATTTAGATACCAT 59.418 41.667 0.00 0.00 37.60 3.55
1779 1897 3.947196 CCACTGCAAGCATTTAGATACCA 59.053 43.478 0.00 0.00 37.60 3.25
1780 1898 4.199310 TCCACTGCAAGCATTTAGATACC 58.801 43.478 0.00 0.00 37.60 2.73
1784 1902 4.144297 AGTTTCCACTGCAAGCATTTAGA 58.856 39.130 0.00 0.00 37.60 2.10
1789 1907 4.081406 TCATAAGTTTCCACTGCAAGCAT 58.919 39.130 0.00 0.00 37.60 3.79
1794 1912 2.754552 GCCATCATAAGTTTCCACTGCA 59.245 45.455 0.00 0.00 31.60 4.41
1795 1913 2.754552 TGCCATCATAAGTTTCCACTGC 59.245 45.455 0.00 0.00 31.60 4.40
1796 1914 6.889301 ATATGCCATCATAAGTTTCCACTG 57.111 37.500 0.00 0.00 38.55 3.66
1804 1922 6.845908 AGAGGTCAAATATGCCATCATAAGT 58.154 36.000 0.00 0.00 38.55 2.24
1827 1946 7.201530 CGTGACCTAAGCAAAGTAAGGAATTAG 60.202 40.741 0.00 0.00 33.16 1.73
1831 1950 4.202284 ACGTGACCTAAGCAAAGTAAGGAA 60.202 41.667 0.00 0.00 33.16 3.36
1833 1952 3.432252 CACGTGACCTAAGCAAAGTAAGG 59.568 47.826 10.90 0.00 35.14 2.69
1908 2027 3.503363 TGTCAGCACCAAAGATAAGCTTG 59.497 43.478 9.86 0.00 36.80 4.01
1920 2039 0.034574 AAACACACCTGTCAGCACCA 60.035 50.000 0.00 0.00 0.00 4.17
1959 2078 9.565213 GAAGGTTTGACTCAAAATTATCATCAG 57.435 33.333 5.76 0.00 35.03 2.90
1974 2093 5.941788 ACTCTTTGGTATGAAGGTTTGACT 58.058 37.500 0.00 0.00 0.00 3.41
1977 2096 9.981114 AATTTTACTCTTTGGTATGAAGGTTTG 57.019 29.630 0.00 0.00 0.00 2.93
1980 2099 8.706322 ACAATTTTACTCTTTGGTATGAAGGT 57.294 30.769 0.00 0.00 0.00 3.50
2010 2130 5.187621 CCAGGAAATGGGAGGTACTTTAA 57.812 43.478 0.00 0.00 46.36 1.52
2096 2217 5.843019 AGAAATTCACCTCCCACTCTTAA 57.157 39.130 0.00 0.00 0.00 1.85
2099 2220 3.812167 GCAAGAAATTCACCTCCCACTCT 60.812 47.826 0.00 0.00 0.00 3.24
2168 2289 5.621197 AACAATGCAATTACGTCTAGCAA 57.379 34.783 8.58 0.00 38.85 3.91
2169 2290 5.621197 AAACAATGCAATTACGTCTAGCA 57.379 34.783 0.00 0.00 39.79 3.49
2203 2324 2.095110 TGCGCTGGAGAAAATGTTCATG 60.095 45.455 9.73 0.00 36.09 3.07
2268 2389 1.807142 GTCAGGCCAGCTAAAGTGAAC 59.193 52.381 5.01 0.00 0.00 3.18
2397 2518 0.042448 GAAGTGTGCAAACGTCGTCC 60.042 55.000 7.22 0.00 0.00 4.79
2400 2521 2.097396 CAGTAGAAGTGTGCAAACGTCG 60.097 50.000 15.97 0.00 34.26 5.12
2486 2607 1.202330 CCTGAGGGAGCTGAACTGAT 58.798 55.000 0.00 0.00 33.58 2.90
2798 2919 1.888512 GCATCTTTGTCAAGGCTTCCA 59.111 47.619 0.00 0.00 0.00 3.53
3089 3210 7.334921 GCAAACACCTGTATGTAACTATAACCA 59.665 37.037 0.00 0.00 30.75 3.67
3173 3294 7.914427 AGTTTCCATGTCATACTGAGGTATA 57.086 36.000 0.00 0.00 36.60 1.47
3335 3456 1.529244 AGCACTCCCACAAACCTGC 60.529 57.895 0.00 0.00 0.00 4.85
3575 3696 2.334971 TTCGTCGAACATCGCACTAA 57.665 45.000 2.90 0.00 40.21 2.24
3582 3703 2.854777 CAGAGTCCATTCGTCGAACATC 59.145 50.000 10.39 4.48 0.00 3.06
3679 3800 6.642950 CAGTGGACTTTGACAGAAACTAGTAG 59.357 42.308 0.00 0.00 0.00 2.57
3680 3801 6.097839 ACAGTGGACTTTGACAGAAACTAGTA 59.902 38.462 0.00 0.00 0.00 1.82
3681 3802 5.104900 ACAGTGGACTTTGACAGAAACTAGT 60.105 40.000 0.00 0.00 0.00 2.57
3682 3803 5.360591 ACAGTGGACTTTGACAGAAACTAG 58.639 41.667 0.00 0.00 0.00 2.57
3683 3804 5.353394 ACAGTGGACTTTGACAGAAACTA 57.647 39.130 0.00 0.00 0.00 2.24
3766 3888 5.280499 TCTGATAGAAGATCCTGGGACAAA 58.720 41.667 0.00 0.00 38.70 2.83
3769 3891 4.039852 GGTTCTGATAGAAGATCCTGGGAC 59.960 50.000 0.00 0.00 34.42 4.46
3871 3993 8.646900 TGCTAATAACCCAAGAAATTTCTGTTT 58.353 29.630 21.15 13.37 37.65 2.83
3880 4029 8.415950 TCAGATTTTGCTAATAACCCAAGAAA 57.584 30.769 0.00 0.00 0.00 2.52
3912 4061 5.649395 CCGTATACAAATATAGGAGGTCGGA 59.351 44.000 3.32 0.00 31.68 4.55
3913 4062 5.416952 ACCGTATACAAATATAGGAGGTCGG 59.583 44.000 3.32 0.00 34.21 4.79
3914 4063 6.506500 ACCGTATACAAATATAGGAGGTCG 57.493 41.667 3.32 0.00 32.95 4.79
3931 4080 9.798994 GTCGGATATTTATCAGATAAACCGTAT 57.201 33.333 26.93 18.05 40.17 3.06
3932 4081 8.246180 GGTCGGATATTTATCAGATAAACCGTA 58.754 37.037 26.93 17.99 40.17 4.02
3933 4082 7.039223 AGGTCGGATATTTATCAGATAAACCGT 60.039 37.037 26.93 15.27 40.17 4.83
3934 4083 7.321153 AGGTCGGATATTTATCAGATAAACCG 58.679 38.462 24.58 24.58 40.41 4.44
3935 4084 7.764901 GGAGGTCGGATATTTATCAGATAAACC 59.235 40.741 16.42 12.25 38.72 3.27
3936 4085 8.532819 AGGAGGTCGGATATTTATCAGATAAAC 58.467 37.037 16.42 5.77 38.72 2.01
3937 4086 8.666129 AGGAGGTCGGATATTTATCAGATAAA 57.334 34.615 16.42 16.42 38.72 1.40
3938 4087 9.937876 ATAGGAGGTCGGATATTTATCAGATAA 57.062 33.333 0.00 0.00 38.72 1.75
3941 4090 9.937876 AATATAGGAGGTCGGATATTTATCAGA 57.062 33.333 0.38 0.00 35.15 3.27
3949 4098 9.064706 CGTATACAAATATAGGAGGTCGGATAT 57.935 37.037 3.32 0.00 32.95 1.63
3950 4099 7.500227 CCGTATACAAATATAGGAGGTCGGATA 59.500 40.741 3.32 0.00 31.68 2.59
3951 4100 6.320672 CCGTATACAAATATAGGAGGTCGGAT 59.679 42.308 3.32 0.00 31.68 4.18
3954 4103 6.506500 ACCGTATACAAATATAGGAGGTCG 57.493 41.667 3.32 0.00 32.95 4.79
3985 4134 4.714632 TCAGGGAACTTAACAGGAACTTG 58.285 43.478 0.00 0.00 40.21 3.16
4034 4183 2.704572 GATGGACCTGAACCAGAACAG 58.295 52.381 0.00 0.00 40.89 3.16
4086 4235 8.994170 GCATAGAGGAATTAGTAAGAAATGGAC 58.006 37.037 0.00 0.00 0.00 4.02
4098 4247 6.599244 TCAACACTTTGGCATAGAGGAATTAG 59.401 38.462 12.05 0.00 33.06 1.73
4111 4260 3.123050 GACAAATGGTCAACACTTTGGC 58.877 45.455 9.84 4.90 46.19 4.52
4226 4375 7.744733 TGTAAATGTGATATTCCTGCCTCATA 58.255 34.615 0.00 0.00 0.00 2.15
4332 4549 3.184581 CAGTACGACTGCAAAAGAAGACC 59.815 47.826 0.00 0.00 39.62 3.85
4357 4574 8.799091 CAGTGTCGAGTCTACTAAATGTAAATG 58.201 37.037 0.00 0.00 0.00 2.32
4360 4577 6.150641 AGCAGTGTCGAGTCTACTAAATGTAA 59.849 38.462 0.00 0.00 0.00 2.41
4361 4578 5.646793 AGCAGTGTCGAGTCTACTAAATGTA 59.353 40.000 0.00 0.00 0.00 2.29
4374 4591 2.032549 CACCAAAGAAAGCAGTGTCGAG 60.033 50.000 0.00 0.00 0.00 4.04
4377 4594 2.024414 ACCACCAAAGAAAGCAGTGTC 58.976 47.619 0.00 0.00 0.00 3.67
4378 4595 2.143876 ACCACCAAAGAAAGCAGTGT 57.856 45.000 0.00 0.00 0.00 3.55
4476 4699 0.397941 CAGTCCTGGAGCTCAAACCA 59.602 55.000 17.19 3.60 34.81 3.67
4668 4894 3.754323 ACAAAACTGTCTCCGACAACAAA 59.246 39.130 0.00 0.00 42.26 2.83
4677 4903 2.542595 CGGTGTGTACAAAACTGTCTCC 59.457 50.000 0.00 0.00 0.00 3.71
4727 4953 3.119743 GCATCACAACTGCAGCTTATTCA 60.120 43.478 15.27 0.00 39.46 2.57
4791 5018 6.064717 AGCTTCCCAAAACTAGGCATTATAG 58.935 40.000 0.00 0.00 0.00 1.31
4835 5062 0.932585 ATGCAACAACCGAAAACGCG 60.933 50.000 3.53 3.53 0.00 6.01
4856 5083 4.202010 GCTCAGAAACAACTAAAAGCACCA 60.202 41.667 0.00 0.00 0.00 4.17
5526 5912 0.315886 TTGTCGTGCGTGGTGTCTAT 59.684 50.000 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.