Multiple sequence alignment - TraesCS3A01G304500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G304500 chr3A 100.000 4194 0 0 1 4194 540658425 540662618 0.000000e+00 7745.0
1 TraesCS3A01G304500 chr3A 94.907 216 11 0 3979 4194 530900553 530900768 5.190000e-89 339.0
2 TraesCS3A01G304500 chr3A 94.144 222 12 1 3974 4194 382103216 382103437 1.870000e-88 337.0
3 TraesCS3A01G304500 chr3D 93.653 1670 76 11 587 2236 410993851 410992192 0.000000e+00 2470.0
4 TraesCS3A01G304500 chr3D 94.440 1259 43 14 2262 3498 410992204 410990951 0.000000e+00 1912.0
5 TraesCS3A01G304500 chr3D 92.483 439 22 6 1 439 410997265 410996838 5.960000e-173 617.0
6 TraesCS3A01G304500 chr3D 94.931 217 11 0 3978 4194 92747868 92747652 1.440000e-89 340.0
7 TraesCS3A01G304500 chr3D 94.907 216 11 0 3979 4194 75350881 75351096 5.190000e-89 339.0
8 TraesCS3A01G304500 chr3D 89.121 239 16 2 3749 3978 410990669 410990432 5.310000e-74 289.0
9 TraesCS3A01G304500 chr3D 95.062 81 4 0 485 565 410996852 410996772 1.220000e-25 128.0
10 TraesCS3A01G304500 chr3B 92.679 1284 66 11 2263 3526 537434930 537433655 0.000000e+00 1825.0
11 TraesCS3A01G304500 chr3B 96.386 913 33 0 1286 2198 537435862 537434950 0.000000e+00 1504.0
12 TraesCS3A01G304500 chr3B 92.138 636 38 5 485 1114 537436485 537435856 0.000000e+00 887.0
13 TraesCS3A01G304500 chr3B 90.227 440 30 8 1 439 537436898 537436471 2.830000e-156 562.0
14 TraesCS3A01G304500 chr3B 79.391 427 37 26 3597 3978 537430426 537430006 1.940000e-63 254.0
15 TraesCS3A01G304500 chr6B 94.954 218 11 0 3977 4194 272401753 272401536 4.020000e-90 342.0
16 TraesCS3A01G304500 chr6B 97.826 46 1 0 440 485 699140441 699140396 3.480000e-11 80.5
17 TraesCS3A01G304500 chr5B 94.470 217 12 0 3978 4194 703269810 703270026 6.720000e-88 335.0
18 TraesCS3A01G304500 chr4B 93.722 223 14 0 3972 4194 2014672 2014450 6.720000e-88 335.0
19 TraesCS3A01G304500 chr4B 97.872 47 1 0 439 485 88423410 88423364 9.660000e-12 82.4
20 TraesCS3A01G304500 chr4A 94.470 217 12 0 3978 4194 319834299 319834515 6.720000e-88 335.0
21 TraesCS3A01G304500 chr1D 94.444 216 12 0 3979 4194 419022380 419022165 2.420000e-87 333.0
22 TraesCS3A01G304500 chr7B 96.078 51 2 0 436 486 696148509 696148559 2.690000e-12 84.2
23 TraesCS3A01G304500 chr7B 96.000 50 2 0 436 485 654494893 654494844 9.660000e-12 82.4
24 TraesCS3A01G304500 chr7B 96.000 50 2 0 436 485 654509075 654509026 9.660000e-12 82.4
25 TraesCS3A01G304500 chr7B 96.000 50 2 0 436 485 654786023 654785974 9.660000e-12 82.4
26 TraesCS3A01G304500 chrUn 96.000 50 2 0 436 485 278315519 278315470 9.660000e-12 82.4
27 TraesCS3A01G304500 chr1B 97.826 46 1 0 440 485 15386235 15386190 3.480000e-11 80.5
28 TraesCS3A01G304500 chr1B 97.826 46 1 0 440 485 15392226 15392181 3.480000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G304500 chr3A 540658425 540662618 4193 False 7745.0 7745 100.0000 1 4194 1 chr3A.!!$F3 4193
1 TraesCS3A01G304500 chr3D 410990432 410997265 6833 True 1083.2 2470 92.9518 1 3978 5 chr3D.!!$R2 3977
2 TraesCS3A01G304500 chr3B 537430006 537436898 6892 True 1006.4 1825 90.1642 1 3978 5 chr3B.!!$R1 3977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 387 0.385390 AGGTGGCAACTTTGAAAGCG 59.615 50.000 0.00 0.0 37.61 4.68 F
639 3540 0.788391 CGTTTTCACTACCAGCGTCC 59.212 55.000 0.00 0.0 0.00 4.79 F
1619 4545 1.068610 TGCGCTAAATTTGCACCACTC 60.069 47.619 9.73 0.0 32.86 3.51 F
2195 5121 0.394565 AGGTTGAGGTGAGTGCAGAC 59.605 55.000 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1619 4545 1.273327 GGAAAACAATCCCCTGCAGTG 59.727 52.381 13.81 6.33 33.05 3.66 R
1824 4750 3.003173 CTCTCCTTGGGGTGCCGA 61.003 66.667 0.00 0.00 0.00 5.54 R
2959 5894 1.338200 ACCTTGACGATCAGGCTGTTC 60.338 52.381 15.27 14.72 0.00 3.18 R
4130 10452 0.036294 GCTCCTTCAGGCCTAAACGT 60.036 55.000 3.98 0.00 34.44 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.870221 GGTAAAATACCCTGCGTTGTAG 57.130 45.455 0.00 0.00 43.18 2.74
51 52 4.256110 GGTAAAATACCCTGCGTTGTAGT 58.744 43.478 0.00 0.00 43.18 2.73
67 68 5.292589 CGTTGTAGTTGTAGTGGTTGAAGTT 59.707 40.000 0.00 0.00 0.00 2.66
80 81 4.216687 TGGTTGAAGTTGTGACTTTTTCGT 59.783 37.500 0.00 0.00 45.88 3.85
81 82 5.158494 GGTTGAAGTTGTGACTTTTTCGTT 58.842 37.500 0.00 0.00 45.88 3.85
124 125 1.209128 CCTCACTATGTTTAGCGCGG 58.791 55.000 8.83 0.00 0.00 6.46
209 211 0.460987 CAAGGCAAGAGCTCTACCGG 60.461 60.000 18.59 14.77 41.70 5.28
219 221 5.615925 AGAGCTCTACCGGTTTCATTAAT 57.384 39.130 16.50 0.00 0.00 1.40
282 284 4.818546 CCATCCTACTATTGTTGAAGCTGG 59.181 45.833 0.00 0.00 0.00 4.85
354 356 9.638239 GGTTTACATGAGAATTTCATAAAAGCA 57.362 29.630 0.00 0.00 44.76 3.91
385 387 0.385390 AGGTGGCAACTTTGAAAGCG 59.615 50.000 0.00 0.00 37.61 4.68
425 427 6.425721 CGAAAAGACATAACAACTTGGGTCTA 59.574 38.462 0.00 0.00 34.75 2.59
426 428 7.041644 CGAAAAGACATAACAACTTGGGTCTAA 60.042 37.037 0.00 0.00 34.75 2.10
427 429 8.706322 AAAAGACATAACAACTTGGGTCTAAT 57.294 30.769 0.00 0.00 34.75 1.73
428 430 8.706322 AAAGACATAACAACTTGGGTCTAATT 57.294 30.769 0.00 0.00 34.75 1.40
429 431 8.706322 AAGACATAACAACTTGGGTCTAATTT 57.294 30.769 0.00 0.00 34.75 1.82
430 432 8.336801 AGACATAACAACTTGGGTCTAATTTC 57.663 34.615 0.00 0.00 34.13 2.17
431 433 7.942341 AGACATAACAACTTGGGTCTAATTTCA 59.058 33.333 0.00 0.00 34.13 2.69
432 434 8.472007 ACATAACAACTTGGGTCTAATTTCAA 57.528 30.769 0.00 0.00 0.00 2.69
433 435 8.919145 ACATAACAACTTGGGTCTAATTTCAAA 58.081 29.630 0.00 0.00 0.00 2.69
434 436 9.410556 CATAACAACTTGGGTCTAATTTCAAAG 57.589 33.333 0.00 0.00 0.00 2.77
435 437 7.654022 AACAACTTGGGTCTAATTTCAAAGA 57.346 32.000 0.00 0.00 0.00 2.52
436 438 7.839680 ACAACTTGGGTCTAATTTCAAAGAT 57.160 32.000 0.00 0.00 0.00 2.40
437 439 7.886338 ACAACTTGGGTCTAATTTCAAAGATC 58.114 34.615 0.00 0.00 0.00 2.75
438 440 7.725844 ACAACTTGGGTCTAATTTCAAAGATCT 59.274 33.333 0.00 0.00 0.00 2.75
439 441 7.693969 ACTTGGGTCTAATTTCAAAGATCTG 57.306 36.000 0.00 0.00 0.00 2.90
440 442 7.234355 ACTTGGGTCTAATTTCAAAGATCTGT 58.766 34.615 0.00 0.00 0.00 3.41
441 443 7.175641 ACTTGGGTCTAATTTCAAAGATCTGTG 59.824 37.037 6.55 6.55 0.00 3.66
442 444 6.778821 TGGGTCTAATTTCAAAGATCTGTGA 58.221 36.000 11.81 11.81 0.00 3.58
443 445 7.405292 TGGGTCTAATTTCAAAGATCTGTGAT 58.595 34.615 16.48 4.65 0.00 3.06
444 446 7.890127 TGGGTCTAATTTCAAAGATCTGTGATT 59.110 33.333 16.48 11.10 0.00 2.57
445 447 8.186821 GGGTCTAATTTCAAAGATCTGTGATTG 58.813 37.037 16.48 7.44 0.00 2.67
446 448 8.734386 GGTCTAATTTCAAAGATCTGTGATTGT 58.266 33.333 16.48 7.11 0.00 2.71
483 485 2.154462 CTTACCAAGCTGACCAGTTGG 58.846 52.381 19.93 19.93 41.30 3.77
508 510 6.580963 AATTTCAAAGATCTCATCGAGACG 57.419 37.500 0.00 0.00 41.76 4.18
510 512 4.965119 TCAAAGATCTCATCGAGACGAA 57.035 40.909 0.00 0.00 41.76 3.85
528 530 2.475519 CGAAAACGACAATGAATCCGGG 60.476 50.000 0.00 0.00 0.00 5.73
534 536 2.607635 CGACAATGAATCCGGGTTGTAG 59.392 50.000 3.59 4.21 35.15 2.74
631 3532 1.154727 CACCGCGCGTTTTCACTAC 60.155 57.895 29.95 0.00 0.00 2.73
639 3540 0.788391 CGTTTTCACTACCAGCGTCC 59.212 55.000 0.00 0.00 0.00 4.79
704 3606 1.939934 TGCAAGAAGGTCACGAGTTTG 59.060 47.619 0.00 0.00 0.00 2.93
709 3611 2.434702 AGAAGGTCACGAGTTTGTTCCT 59.565 45.455 0.00 0.00 0.00 3.36
783 3689 2.231642 CCCCCTTCACCTATCCCAC 58.768 63.158 0.00 0.00 0.00 4.61
898 3805 6.114187 TGACATAGTTTGAACTCCATCACT 57.886 37.500 0.00 0.00 40.37 3.41
902 3809 7.227156 ACATAGTTTGAACTCCATCACTTCTT 58.773 34.615 0.00 0.00 40.37 2.52
1014 3921 1.765314 AGATCGATGGAAACCCAGGAG 59.235 52.381 0.54 0.00 37.09 3.69
1071 3978 2.989571 AGTGAAAGGGAGAGGTGGATTT 59.010 45.455 0.00 0.00 0.00 2.17
1152 4073 2.706190 GGACTGGTAGGTGCAGGAATAT 59.294 50.000 0.00 0.00 0.00 1.28
1174 4095 2.932614 GACACCCAACTGAGAATGATCG 59.067 50.000 0.00 0.00 0.00 3.69
1176 4097 2.932614 CACCCAACTGAGAATGATCGTC 59.067 50.000 0.00 0.00 0.00 4.20
1179 4100 2.854777 CCAACTGAGAATGATCGTCGAC 59.145 50.000 5.18 5.18 0.00 4.20
1216 4138 4.713321 CCCTGGATGAACATGATTTCCTTT 59.287 41.667 0.00 0.00 0.00 3.11
1292 4214 5.578005 TTCACTGACTATACTTCCCTTCG 57.422 43.478 0.00 0.00 0.00 3.79
1309 4231 6.230472 TCCCTTCGATTTGTGATGGTATATG 58.770 40.000 0.00 0.00 0.00 1.78
1317 4239 7.012327 CGATTTGTGATGGTATATGGTGTTCTT 59.988 37.037 0.00 0.00 0.00 2.52
1321 4243 7.402054 TGTGATGGTATATGGTGTTCTTTCTT 58.598 34.615 0.00 0.00 0.00 2.52
1322 4244 7.336679 TGTGATGGTATATGGTGTTCTTTCTTG 59.663 37.037 0.00 0.00 0.00 3.02
1417 4339 1.899814 CTCACCAAGCAGTACCACCTA 59.100 52.381 0.00 0.00 0.00 3.08
1480 4402 1.878069 GGCAAATTTCGCGCCCATC 60.878 57.895 0.00 0.00 40.07 3.51
1534 4456 1.442526 GGTTCATGGCCATCTCGCTG 61.443 60.000 17.61 5.14 0.00 5.18
1586 4512 1.094785 ACCACCAAATATGAGCGTGC 58.905 50.000 0.00 0.00 0.00 5.34
1596 4522 3.567797 GAGCGTGCCGATGCTTCC 61.568 66.667 0.00 0.00 44.95 3.46
1619 4545 1.068610 TGCGCTAAATTTGCACCACTC 60.069 47.619 9.73 0.00 32.86 3.51
1824 4750 4.070552 GGCGCGGACCAGTTCTCT 62.071 66.667 8.83 0.00 0.00 3.10
2195 5121 0.394565 AGGTTGAGGTGAGTGCAGAC 59.605 55.000 0.00 0.00 0.00 3.51
2217 5143 3.414269 TGCAGAGTGAAAAGCATGATCA 58.586 40.909 0.00 0.00 31.05 2.92
2222 5148 4.391216 AGAGTGAAAAGCATGATCAACTCG 59.609 41.667 0.00 0.00 31.98 4.18
2271 5197 8.640091 TTTTGTTGAAAATCGATGATTGTTCA 57.360 26.923 0.00 1.89 32.14 3.18
2272 5198 8.815141 TTTGTTGAAAATCGATGATTGTTCAT 57.185 26.923 0.00 0.00 45.39 2.57
2393 5322 4.880537 CGGCCTCAGAGCGCGATT 62.881 66.667 12.10 0.00 0.00 3.34
2450 5379 1.290324 GTGGAGCAGCTCAAGTCGA 59.710 57.895 24.09 0.00 31.08 4.20
2990 5925 1.444250 GTCAAGGTGGTGGACGACA 59.556 57.895 0.00 0.00 0.00 4.35
3158 6096 1.889530 GAACGTGGAGTGGGAGGAGG 61.890 65.000 0.00 0.00 0.00 4.30
3159 6097 2.037367 CGTGGAGTGGGAGGAGGA 59.963 66.667 0.00 0.00 0.00 3.71
3160 6098 2.055042 CGTGGAGTGGGAGGAGGAG 61.055 68.421 0.00 0.00 0.00 3.69
3169 6107 2.371259 GGAGGAGGAGGGTGAAGGC 61.371 68.421 0.00 0.00 0.00 4.35
3186 6124 4.493747 CGAGAGGGAACGGCCGAC 62.494 72.222 35.90 24.12 37.63 4.79
3238 6176 5.634859 GTGTCACAATGAGGCCATTTTTAAG 59.365 40.000 5.01 0.00 40.81 1.85
3317 6256 1.265365 GAACCAACTGCTCTGAACTGC 59.735 52.381 0.00 0.00 0.00 4.40
3321 6260 0.601311 AACTGCTCTGAACTGCGGTC 60.601 55.000 0.00 0.00 46.65 4.79
3372 6320 0.254178 ACTCGCCTTGCCATTCATCT 59.746 50.000 0.00 0.00 0.00 2.90
3394 6344 4.711949 AGCCGGAGCCTGCAGTTG 62.712 66.667 13.81 0.00 41.25 3.16
3397 6347 2.620112 CCGGAGCCTGCAGTTGTTG 61.620 63.158 13.81 0.00 0.00 3.33
3400 6350 0.312102 GGAGCCTGCAGTTGTTGTTC 59.688 55.000 13.81 4.13 0.00 3.18
3424 6374 7.666623 TCTTTTGGAAATGTTTACCTCATTCC 58.333 34.615 0.00 0.00 34.92 3.01
3493 6444 7.117236 GGTCATCTAATTTCAACTAACGACACA 59.883 37.037 0.00 0.00 0.00 3.72
3496 6447 7.169035 TCTAATTTCAACTAACGACACACAC 57.831 36.000 0.00 0.00 0.00 3.82
3498 6449 4.850859 TTTCAACTAACGACACACACAG 57.149 40.909 0.00 0.00 0.00 3.66
3499 6450 2.198406 TCAACTAACGACACACACAGC 58.802 47.619 0.00 0.00 0.00 4.40
3506 6457 4.829064 AACGACACACACAGCATATTTT 57.171 36.364 0.00 0.00 0.00 1.82
3572 9717 4.319139 TTTTTATGCAACAGCAGCTGAA 57.681 36.364 29.70 8.66 42.36 3.02
3573 9718 3.564235 TTTATGCAACAGCAGCTGAAG 57.436 42.857 29.70 19.94 42.36 3.02
3574 9719 1.456296 TATGCAACAGCAGCTGAAGG 58.544 50.000 29.70 17.23 42.36 3.46
3575 9720 1.248785 ATGCAACAGCAGCTGAAGGG 61.249 55.000 29.70 14.85 42.36 3.95
3576 9721 1.900498 GCAACAGCAGCTGAAGGGT 60.900 57.895 29.70 2.58 35.18 4.34
3577 9722 1.458639 GCAACAGCAGCTGAAGGGTT 61.459 55.000 29.70 9.44 35.18 4.11
3578 9723 1.035139 CAACAGCAGCTGAAGGGTTT 58.965 50.000 29.70 8.66 35.18 3.27
3579 9724 1.410153 CAACAGCAGCTGAAGGGTTTT 59.590 47.619 29.70 7.89 35.18 2.43
3580 9725 1.780503 ACAGCAGCTGAAGGGTTTTT 58.219 45.000 29.70 0.00 35.18 1.94
3615 9760 7.676338 GCGAAATAACAGCAGCTGAAGTTAATA 60.676 37.037 29.70 12.69 35.18 0.98
3626 9771 7.616673 CAGCTGAAGTTAATATCGAAGACTTG 58.383 38.462 8.42 0.00 42.51 3.16
3627 9772 6.256757 AGCTGAAGTTAATATCGAAGACTTGC 59.743 38.462 0.00 0.00 42.51 4.01
3634 9779 1.927895 ATCGAAGACTTGCCGATGTC 58.072 50.000 10.12 0.00 42.51 3.06
3639 9784 3.678072 CGAAGACTTGCCGATGTCTAAAA 59.322 43.478 0.00 0.00 42.02 1.52
3744 9891 4.139234 GGGGGACGGCGACACTAC 62.139 72.222 16.62 2.05 0.00 2.73
3760 10061 6.237490 GCGACACTACATAAGTACACAACATC 60.237 42.308 0.00 0.00 35.76 3.06
3828 10130 9.994432 ATTTCACATTCTCGCTTTTAAGATTAG 57.006 29.630 0.00 0.00 0.00 1.73
3845 10147 5.788450 AGATTAGCATAGGATAGTGTGCAC 58.212 41.667 10.75 10.75 39.94 4.57
3924 10240 4.582701 AGCTGACACTGCTATATGTCTC 57.417 45.455 6.00 0.00 44.59 3.36
3978 10300 6.542370 GGTACATCAATGTAAATGTGGCTACT 59.458 38.462 0.64 0.00 44.11 2.57
3979 10301 6.441093 ACATCAATGTAAATGTGGCTACTG 57.559 37.500 0.64 0.00 39.68 2.74
3980 10302 5.945784 ACATCAATGTAAATGTGGCTACTGT 59.054 36.000 0.64 0.00 39.68 3.55
3981 10303 6.434028 ACATCAATGTAAATGTGGCTACTGTT 59.566 34.615 0.64 0.00 39.68 3.16
3982 10304 6.252967 TCAATGTAAATGTGGCTACTGTTG 57.747 37.500 0.64 0.00 0.00 3.33
3983 10305 6.000840 TCAATGTAAATGTGGCTACTGTTGA 58.999 36.000 0.64 0.02 0.00 3.18
3984 10306 5.880054 ATGTAAATGTGGCTACTGTTGAC 57.120 39.130 0.64 1.02 0.00 3.18
3985 10307 3.743911 TGTAAATGTGGCTACTGTTGACG 59.256 43.478 0.64 0.00 0.00 4.35
3986 10308 2.543777 AATGTGGCTACTGTTGACGT 57.456 45.000 0.64 0.00 0.00 4.34
3987 10309 3.671008 AATGTGGCTACTGTTGACGTA 57.329 42.857 0.64 0.00 0.00 3.57
3988 10310 3.887621 ATGTGGCTACTGTTGACGTAT 57.112 42.857 0.64 0.00 0.00 3.06
3989 10311 4.994907 ATGTGGCTACTGTTGACGTATA 57.005 40.909 0.64 0.00 0.00 1.47
3990 10312 4.787260 TGTGGCTACTGTTGACGTATAA 57.213 40.909 0.64 0.00 0.00 0.98
3991 10313 5.333299 TGTGGCTACTGTTGACGTATAAT 57.667 39.130 0.64 0.00 0.00 1.28
3992 10314 5.106442 TGTGGCTACTGTTGACGTATAATG 58.894 41.667 0.64 0.00 0.00 1.90
3993 10315 5.107133 GTGGCTACTGTTGACGTATAATGT 58.893 41.667 0.00 0.00 0.00 2.71
3994 10316 5.005394 GTGGCTACTGTTGACGTATAATGTG 59.995 44.000 0.00 0.00 0.00 3.21
3995 10317 4.025979 GGCTACTGTTGACGTATAATGTGC 60.026 45.833 0.00 0.00 0.00 4.57
3996 10318 4.804139 GCTACTGTTGACGTATAATGTGCT 59.196 41.667 0.00 0.00 0.00 4.40
3997 10319 5.276395 GCTACTGTTGACGTATAATGTGCTG 60.276 44.000 0.00 0.00 0.00 4.41
3998 10320 3.370978 ACTGTTGACGTATAATGTGCTGC 59.629 43.478 0.00 0.00 0.00 5.25
3999 10321 2.675844 TGTTGACGTATAATGTGCTGCC 59.324 45.455 0.00 0.00 0.00 4.85
4000 10322 2.936498 GTTGACGTATAATGTGCTGCCT 59.064 45.455 0.00 0.00 0.00 4.75
4001 10323 4.116961 GTTGACGTATAATGTGCTGCCTA 58.883 43.478 0.00 0.00 0.00 3.93
4002 10324 3.977427 TGACGTATAATGTGCTGCCTAG 58.023 45.455 0.00 0.00 0.00 3.02
4003 10325 3.383505 TGACGTATAATGTGCTGCCTAGT 59.616 43.478 0.00 0.00 0.00 2.57
4004 10326 3.978687 ACGTATAATGTGCTGCCTAGTC 58.021 45.455 0.00 0.00 0.00 2.59
4005 10327 3.637229 ACGTATAATGTGCTGCCTAGTCT 59.363 43.478 0.00 0.00 0.00 3.24
4006 10328 4.230657 CGTATAATGTGCTGCCTAGTCTC 58.769 47.826 0.00 0.00 0.00 3.36
4007 10329 4.022762 CGTATAATGTGCTGCCTAGTCTCT 60.023 45.833 0.00 0.00 0.00 3.10
4008 10330 5.508153 CGTATAATGTGCTGCCTAGTCTCTT 60.508 44.000 0.00 0.00 0.00 2.85
4009 10331 2.977772 ATGTGCTGCCTAGTCTCTTC 57.022 50.000 0.00 0.00 0.00 2.87
4010 10332 0.898320 TGTGCTGCCTAGTCTCTTCC 59.102 55.000 0.00 0.00 0.00 3.46
4011 10333 0.898320 GTGCTGCCTAGTCTCTTCCA 59.102 55.000 0.00 0.00 0.00 3.53
4012 10334 1.484240 GTGCTGCCTAGTCTCTTCCAT 59.516 52.381 0.00 0.00 0.00 3.41
4013 10335 1.759445 TGCTGCCTAGTCTCTTCCATC 59.241 52.381 0.00 0.00 0.00 3.51
4014 10336 1.759445 GCTGCCTAGTCTCTTCCATCA 59.241 52.381 0.00 0.00 0.00 3.07
4015 10337 2.169352 GCTGCCTAGTCTCTTCCATCAA 59.831 50.000 0.00 0.00 0.00 2.57
4016 10338 3.369892 GCTGCCTAGTCTCTTCCATCAAA 60.370 47.826 0.00 0.00 0.00 2.69
4017 10339 4.685575 GCTGCCTAGTCTCTTCCATCAAAT 60.686 45.833 0.00 0.00 0.00 2.32
4018 10340 5.028549 TGCCTAGTCTCTTCCATCAAATC 57.971 43.478 0.00 0.00 0.00 2.17
4019 10341 4.054671 GCCTAGTCTCTTCCATCAAATCG 58.945 47.826 0.00 0.00 0.00 3.34
4020 10342 4.626042 CCTAGTCTCTTCCATCAAATCGG 58.374 47.826 0.00 0.00 0.00 4.18
4021 10343 4.100189 CCTAGTCTCTTCCATCAAATCGGT 59.900 45.833 0.00 0.00 0.00 4.69
4022 10344 4.559862 AGTCTCTTCCATCAAATCGGTT 57.440 40.909 0.00 0.00 0.00 4.44
4023 10345 4.911390 AGTCTCTTCCATCAAATCGGTTT 58.089 39.130 0.00 0.00 0.00 3.27
4024 10346 5.316987 AGTCTCTTCCATCAAATCGGTTTT 58.683 37.500 0.00 0.00 0.00 2.43
4025 10347 5.770162 AGTCTCTTCCATCAAATCGGTTTTT 59.230 36.000 0.00 0.00 0.00 1.94
4043 10365 4.771590 TTTTTGATTGCACTGGCTAGAG 57.228 40.909 3.17 0.00 41.91 2.43
4044 10366 1.742761 TTGATTGCACTGGCTAGAGC 58.257 50.000 12.50 12.50 41.91 4.09
4045 10367 0.614812 TGATTGCACTGGCTAGAGCA 59.385 50.000 17.75 17.75 46.52 4.26
4047 10369 4.948257 TGCACTGGCTAGAGCATG 57.052 55.556 17.75 0.00 43.98 4.06
4048 10370 1.450848 TGCACTGGCTAGAGCATGC 60.451 57.895 17.75 10.51 43.98 4.06
4049 10371 1.450848 GCACTGGCTAGAGCATGCA 60.451 57.895 21.98 0.00 42.07 3.96
4050 10372 1.712977 GCACTGGCTAGAGCATGCAC 61.713 60.000 21.98 14.59 42.07 4.57
4051 10373 0.107800 CACTGGCTAGAGCATGCACT 60.108 55.000 21.45 21.45 44.36 4.40
4052 10374 0.617413 ACTGGCTAGAGCATGCACTT 59.383 50.000 22.83 8.33 44.36 3.16
4053 10375 1.004044 ACTGGCTAGAGCATGCACTTT 59.996 47.619 22.83 0.00 44.36 2.66
4054 10376 2.089980 CTGGCTAGAGCATGCACTTTT 58.910 47.619 22.83 0.00 44.36 2.27
4055 10377 3.273434 CTGGCTAGAGCATGCACTTTTA 58.727 45.455 22.83 4.45 44.36 1.52
4056 10378 3.009723 TGGCTAGAGCATGCACTTTTAC 58.990 45.455 22.83 11.40 44.36 2.01
4057 10379 3.009723 GGCTAGAGCATGCACTTTTACA 58.990 45.455 22.83 3.70 44.36 2.41
4058 10380 3.629398 GGCTAGAGCATGCACTTTTACAT 59.371 43.478 22.83 0.00 44.36 2.29
4059 10381 4.497006 GGCTAGAGCATGCACTTTTACATG 60.497 45.833 22.83 6.41 45.19 3.21
4060 10382 4.333649 GCTAGAGCATGCACTTTTACATGA 59.666 41.667 22.83 1.48 45.23 3.07
4061 10383 5.008415 GCTAGAGCATGCACTTTTACATGAT 59.992 40.000 22.83 0.05 44.98 2.45
4062 10384 6.203530 GCTAGAGCATGCACTTTTACATGATA 59.796 38.462 22.83 0.01 42.56 2.15
4063 10385 7.094890 GCTAGAGCATGCACTTTTACATGATAT 60.095 37.037 22.83 0.68 42.56 1.63
4064 10386 7.199541 AGAGCATGCACTTTTACATGATATC 57.800 36.000 21.98 2.25 42.56 1.63
4065 10387 6.769341 AGAGCATGCACTTTTACATGATATCA 59.231 34.615 21.98 8.10 42.56 2.15
4066 10388 6.967135 AGCATGCACTTTTACATGATATCAG 58.033 36.000 21.98 6.15 45.23 2.90
4067 10389 6.769341 AGCATGCACTTTTACATGATATCAGA 59.231 34.615 21.98 0.00 45.23 3.27
4068 10390 7.041303 AGCATGCACTTTTACATGATATCAGAG 60.041 37.037 21.98 8.78 45.23 3.35
4069 10391 6.609237 TGCACTTTTACATGATATCAGAGC 57.391 37.500 11.78 6.47 0.00 4.09
4070 10392 5.528690 TGCACTTTTACATGATATCAGAGCC 59.471 40.000 11.78 0.00 0.00 4.70
4071 10393 5.528690 GCACTTTTACATGATATCAGAGCCA 59.471 40.000 11.78 0.00 0.00 4.75
4072 10394 6.038603 GCACTTTTACATGATATCAGAGCCAA 59.961 38.462 11.78 1.08 0.00 4.52
4073 10395 7.637229 CACTTTTACATGATATCAGAGCCAAG 58.363 38.462 11.78 11.98 0.00 3.61
4074 10396 7.496920 CACTTTTACATGATATCAGAGCCAAGA 59.503 37.037 11.78 0.42 0.00 3.02
4075 10397 7.714377 ACTTTTACATGATATCAGAGCCAAGAG 59.286 37.037 11.78 10.24 0.00 2.85
4076 10398 4.620589 ACATGATATCAGAGCCAAGAGG 57.379 45.455 11.78 0.00 38.23 3.69
4077 10399 3.972638 ACATGATATCAGAGCCAAGAGGT 59.027 43.478 11.78 0.00 37.19 3.85
4078 10400 4.040217 ACATGATATCAGAGCCAAGAGGTC 59.960 45.833 11.78 0.00 43.67 3.85
4098 10420 2.260844 TTGAGTTCAAGACCCAGCTG 57.739 50.000 6.78 6.78 0.00 4.24
4099 10421 0.397941 TGAGTTCAAGACCCAGCTGG 59.602 55.000 26.87 26.87 41.37 4.85
4100 10422 0.957888 GAGTTCAAGACCCAGCTGGC 60.958 60.000 28.39 14.93 37.83 4.85
4101 10423 2.032528 TTCAAGACCCAGCTGGCG 59.967 61.111 28.39 21.83 37.83 5.69
4102 10424 4.704833 TCAAGACCCAGCTGGCGC 62.705 66.667 28.39 20.04 37.83 6.53
4104 10426 4.269523 AAGACCCAGCTGGCGCAA 62.270 61.111 28.39 0.00 39.10 4.85
4105 10427 3.574074 AAGACCCAGCTGGCGCAAT 62.574 57.895 28.39 9.29 39.10 3.56
4106 10428 3.064324 GACCCAGCTGGCGCAATT 61.064 61.111 28.39 6.08 39.10 2.32
4107 10429 1.748879 GACCCAGCTGGCGCAATTA 60.749 57.895 28.39 0.00 39.10 1.40
4108 10430 1.304052 ACCCAGCTGGCGCAATTAA 60.304 52.632 28.39 0.00 39.10 1.40
4109 10431 0.897863 ACCCAGCTGGCGCAATTAAA 60.898 50.000 28.39 0.00 39.10 1.52
4110 10432 0.461135 CCCAGCTGGCGCAATTAAAT 59.539 50.000 28.39 0.00 39.10 1.40
4111 10433 1.134729 CCCAGCTGGCGCAATTAAATT 60.135 47.619 28.39 0.00 39.10 1.82
4112 10434 1.928503 CCAGCTGGCGCAATTAAATTG 59.071 47.619 22.33 0.00 43.06 2.32
4124 10446 5.535043 CAATTAAATTGCAGCCCACTTTC 57.465 39.130 0.00 0.00 32.92 2.62
4125 10447 3.296322 TTAAATTGCAGCCCACTTTCG 57.704 42.857 0.00 0.00 30.20 3.46
4126 10448 1.327303 AAATTGCAGCCCACTTTCGA 58.673 45.000 0.00 0.00 0.00 3.71
4127 10449 1.549203 AATTGCAGCCCACTTTCGAT 58.451 45.000 0.00 0.00 0.00 3.59
4128 10450 1.098050 ATTGCAGCCCACTTTCGATC 58.902 50.000 0.00 0.00 0.00 3.69
4129 10451 0.960364 TTGCAGCCCACTTTCGATCC 60.960 55.000 0.00 0.00 0.00 3.36
4130 10452 1.377202 GCAGCCCACTTTCGATCCA 60.377 57.895 0.00 0.00 0.00 3.41
4131 10453 1.648467 GCAGCCCACTTTCGATCCAC 61.648 60.000 0.00 0.00 0.00 4.02
4132 10454 1.079127 AGCCCACTTTCGATCCACG 60.079 57.895 0.00 0.00 44.09 4.94
4133 10455 1.375523 GCCCACTTTCGATCCACGT 60.376 57.895 0.00 0.00 43.13 4.49
4134 10456 0.953960 GCCCACTTTCGATCCACGTT 60.954 55.000 0.00 0.00 43.13 3.99
4135 10457 1.519408 CCCACTTTCGATCCACGTTT 58.481 50.000 0.00 0.00 43.13 3.60
4136 10458 2.690786 CCCACTTTCGATCCACGTTTA 58.309 47.619 0.00 0.00 43.13 2.01
4137 10459 2.671396 CCCACTTTCGATCCACGTTTAG 59.329 50.000 0.00 0.00 43.13 1.85
4138 10460 2.671396 CCACTTTCGATCCACGTTTAGG 59.329 50.000 0.00 0.00 43.13 2.69
4139 10461 2.093783 CACTTTCGATCCACGTTTAGGC 59.906 50.000 0.00 0.00 43.13 3.93
4140 10462 1.664151 CTTTCGATCCACGTTTAGGCC 59.336 52.381 0.00 0.00 43.13 5.19
4141 10463 0.899720 TTCGATCCACGTTTAGGCCT 59.100 50.000 11.78 11.78 43.13 5.19
4142 10464 0.174845 TCGATCCACGTTTAGGCCTG 59.825 55.000 17.99 0.00 43.13 4.85
4143 10465 0.174845 CGATCCACGTTTAGGCCTGA 59.825 55.000 17.99 3.42 37.22 3.86
4144 10466 1.404986 CGATCCACGTTTAGGCCTGAA 60.405 52.381 17.99 11.64 37.22 3.02
4145 10467 2.280628 GATCCACGTTTAGGCCTGAAG 58.719 52.381 17.99 10.14 0.00 3.02
4146 10468 0.323629 TCCACGTTTAGGCCTGAAGG 59.676 55.000 23.91 23.91 38.53 3.46
4147 10469 0.323629 CCACGTTTAGGCCTGAAGGA 59.676 55.000 30.07 2.20 37.39 3.36
4148 10470 1.676014 CCACGTTTAGGCCTGAAGGAG 60.676 57.143 30.07 23.34 37.39 3.69
4149 10471 0.036294 ACGTTTAGGCCTGAAGGAGC 60.036 55.000 30.07 10.60 37.39 4.70
4155 10477 2.743928 GCCTGAAGGAGCCACACG 60.744 66.667 0.00 0.00 37.39 4.49
4156 10478 2.743718 CCTGAAGGAGCCACACGT 59.256 61.111 0.00 0.00 37.39 4.49
4157 10479 1.669115 CCTGAAGGAGCCACACGTG 60.669 63.158 15.48 15.48 37.39 4.49
4158 10480 1.367471 CTGAAGGAGCCACACGTGA 59.633 57.895 25.01 0.00 0.00 4.35
4159 10481 0.249868 CTGAAGGAGCCACACGTGAA 60.250 55.000 25.01 0.00 0.00 3.18
4160 10482 0.249868 TGAAGGAGCCACACGTGAAG 60.250 55.000 25.01 13.82 0.00 3.02
4161 10483 0.951040 GAAGGAGCCACACGTGAAGG 60.951 60.000 25.01 23.09 0.00 3.46
4162 10484 2.358737 GGAGCCACACGTGAAGGG 60.359 66.667 25.01 20.28 0.00 3.95
4163 10485 2.358737 GAGCCACACGTGAAGGGG 60.359 66.667 25.01 17.80 0.00 4.79
4164 10486 2.847234 AGCCACACGTGAAGGGGA 60.847 61.111 25.01 0.00 0.00 4.81
4165 10487 2.358737 GCCACACGTGAAGGGGAG 60.359 66.667 25.01 3.34 0.00 4.30
4166 10488 3.148084 CCACACGTGAAGGGGAGT 58.852 61.111 25.01 0.00 0.00 3.85
4167 10489 1.301716 CCACACGTGAAGGGGAGTG 60.302 63.158 25.01 7.07 40.17 3.51
4168 10490 3.965660 ACACGTGAAGGGGAGTGT 58.034 55.556 25.01 0.00 42.26 3.55
4169 10491 0.179056 CACACGTGAAGGGGAGTGTT 60.179 55.000 25.01 0.00 44.32 3.32
4170 10492 0.179056 ACACGTGAAGGGGAGTGTTG 60.179 55.000 25.01 0.00 44.32 3.33
4171 10493 0.105964 CACGTGAAGGGGAGTGTTGA 59.894 55.000 10.90 0.00 0.00 3.18
4172 10494 0.106149 ACGTGAAGGGGAGTGTTGAC 59.894 55.000 0.00 0.00 0.00 3.18
4173 10495 0.944311 CGTGAAGGGGAGTGTTGACG 60.944 60.000 0.00 0.00 0.00 4.35
4174 10496 0.106149 GTGAAGGGGAGTGTTGACGT 59.894 55.000 0.00 0.00 0.00 4.34
4175 10497 1.342174 GTGAAGGGGAGTGTTGACGTA 59.658 52.381 0.00 0.00 0.00 3.57
4176 10498 2.028385 GTGAAGGGGAGTGTTGACGTAT 60.028 50.000 0.00 0.00 0.00 3.06
4177 10499 3.194116 GTGAAGGGGAGTGTTGACGTATA 59.806 47.826 0.00 0.00 0.00 1.47
4178 10500 3.833650 TGAAGGGGAGTGTTGACGTATAA 59.166 43.478 0.00 0.00 0.00 0.98
4179 10501 4.468510 TGAAGGGGAGTGTTGACGTATAAT 59.531 41.667 0.00 0.00 0.00 1.28
4180 10502 4.402056 AGGGGAGTGTTGACGTATAATG 57.598 45.455 0.00 0.00 0.00 1.90
4181 10503 3.773119 AGGGGAGTGTTGACGTATAATGT 59.227 43.478 0.00 0.00 0.00 2.71
4182 10504 3.869246 GGGGAGTGTTGACGTATAATGTG 59.131 47.826 0.00 0.00 0.00 3.21
4183 10505 3.308866 GGGAGTGTTGACGTATAATGTGC 59.691 47.826 0.00 0.00 0.00 4.57
4184 10506 4.181578 GGAGTGTTGACGTATAATGTGCT 58.818 43.478 0.00 0.00 0.00 4.40
4185 10507 4.032900 GGAGTGTTGACGTATAATGTGCTG 59.967 45.833 0.00 0.00 0.00 4.41
4186 10508 3.370978 AGTGTTGACGTATAATGTGCTGC 59.629 43.478 0.00 0.00 0.00 5.25
4187 10509 2.675844 TGTTGACGTATAATGTGCTGCC 59.324 45.455 0.00 0.00 0.00 4.85
4188 10510 2.936498 GTTGACGTATAATGTGCTGCCT 59.064 45.455 0.00 0.00 0.00 4.75
4189 10511 4.116961 GTTGACGTATAATGTGCTGCCTA 58.883 43.478 0.00 0.00 0.00 3.93
4190 10512 3.977427 TGACGTATAATGTGCTGCCTAG 58.023 45.455 0.00 0.00 0.00 3.02
4191 10513 3.383505 TGACGTATAATGTGCTGCCTAGT 59.616 43.478 0.00 0.00 0.00 2.57
4192 10514 3.978687 ACGTATAATGTGCTGCCTAGTC 58.021 45.455 0.00 0.00 0.00 2.59
4193 10515 3.637229 ACGTATAATGTGCTGCCTAGTCT 59.363 43.478 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.092944 CACAACTTCAACCACTACAACTACAA 59.907 38.462 0.00 0.00 0.00 2.41
46 47 5.583061 CACAACTTCAACCACTACAACTACA 59.417 40.000 0.00 0.00 0.00 2.74
47 48 5.813672 TCACAACTTCAACCACTACAACTAC 59.186 40.000 0.00 0.00 0.00 2.73
48 49 5.813672 GTCACAACTTCAACCACTACAACTA 59.186 40.000 0.00 0.00 0.00 2.24
49 50 4.634443 GTCACAACTTCAACCACTACAACT 59.366 41.667 0.00 0.00 0.00 3.16
50 51 4.634443 AGTCACAACTTCAACCACTACAAC 59.366 41.667 0.00 0.00 28.74 3.32
51 52 4.839121 AGTCACAACTTCAACCACTACAA 58.161 39.130 0.00 0.00 28.74 2.41
67 68 8.293867 CCTATAATTTCCAACGAAAAAGTCACA 58.706 33.333 0.00 0.00 41.25 3.58
80 81 7.147742 GGGAATGTTTGCTCCTATAATTTCCAA 60.148 37.037 0.00 0.00 32.45 3.53
81 82 6.323739 GGGAATGTTTGCTCCTATAATTTCCA 59.676 38.462 0.00 0.00 32.45 3.53
234 236 6.314896 GCAACTTCAGAGTTCAGCTATGTATT 59.685 38.462 0.00 0.00 44.14 1.89
252 254 5.880332 TCAACAATAGTAGGATGGCAACTTC 59.120 40.000 0.00 0.00 39.93 3.01
282 284 9.632807 TTGGTAAATTCAGTACAAATACAATGC 57.367 29.630 0.00 0.00 33.30 3.56
417 419 7.230747 TCACAGATCTTTGAAATTAGACCCAA 58.769 34.615 9.14 0.00 0.00 4.12
463 465 2.154462 CCAACTGGTCAGCTTGGTAAG 58.846 52.381 16.77 0.00 36.13 2.34
464 466 2.270352 CCAACTGGTCAGCTTGGTAA 57.730 50.000 16.77 0.00 36.13 2.85
466 468 4.907457 CCAACTGGTCAGCTTGGT 57.093 55.556 16.77 0.00 36.13 3.67
476 478 7.452880 TGAGATCTTTGAAATTACCAACTGG 57.547 36.000 0.00 0.00 42.17 4.00
477 479 7.907045 CGATGAGATCTTTGAAATTACCAACTG 59.093 37.037 0.00 0.00 0.00 3.16
478 480 7.824289 TCGATGAGATCTTTGAAATTACCAACT 59.176 33.333 0.00 0.00 0.00 3.16
479 481 7.974675 TCGATGAGATCTTTGAAATTACCAAC 58.025 34.615 0.00 0.00 0.00 3.77
480 482 8.040727 TCTCGATGAGATCTTTGAAATTACCAA 58.959 33.333 0.00 0.00 33.35 3.67
481 483 7.492669 GTCTCGATGAGATCTTTGAAATTACCA 59.507 37.037 0.00 0.00 40.98 3.25
482 484 7.306283 CGTCTCGATGAGATCTTTGAAATTACC 60.306 40.741 0.00 0.00 40.98 2.85
483 485 7.432545 TCGTCTCGATGAGATCTTTGAAATTAC 59.567 37.037 0.00 0.00 40.98 1.89
484 486 7.480810 TCGTCTCGATGAGATCTTTGAAATTA 58.519 34.615 0.00 0.00 40.98 1.40
508 510 2.486592 ACCCGGATTCATTGTCGTTTTC 59.513 45.455 0.73 0.00 0.00 2.29
510 512 2.194201 ACCCGGATTCATTGTCGTTT 57.806 45.000 0.73 0.00 0.00 3.60
528 530 7.859377 TCTCATACCGTTAATTCGATCTACAAC 59.141 37.037 0.00 0.00 0.00 3.32
534 536 5.462405 AGCTCTCATACCGTTAATTCGATC 58.538 41.667 0.00 0.00 0.00 3.69
605 3506 1.084935 AAACGCGCGGTGCATGTATA 61.085 50.000 35.22 0.00 46.97 1.47
704 3606 6.156429 TCCATTTAAGGTAGGAGAAGAGGAAC 59.844 42.308 0.00 0.00 0.00 3.62
709 3611 7.808279 TTCTTCCATTTAAGGTAGGAGAAGA 57.192 36.000 0.00 0.00 37.35 2.87
783 3689 4.120755 GCAGGAAGGGCCCAGGAG 62.121 72.222 27.56 10.86 37.37 3.69
796 3702 2.220653 TCTCCTTGGAAATTGGCAGG 57.779 50.000 0.00 0.00 0.00 4.85
898 3805 0.102120 CCGTTGTTGCTTGCCAAGAA 59.898 50.000 9.04 0.00 34.67 2.52
902 3809 0.179124 GTTTCCGTTGTTGCTTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
1014 3921 1.070445 AGAGCTATGCACATCGCCC 59.930 57.895 3.74 0.00 41.33 6.13
1022 3929 2.869237 GCATCGGATTCAGAGCTATGCA 60.869 50.000 2.68 0.00 38.44 3.96
1071 3978 1.220749 GATGAACGGCAGGGCTACA 59.779 57.895 0.00 0.00 0.00 2.74
1111 4021 2.501610 GCCGGGGCAGAGTAAGAG 59.498 66.667 2.18 0.00 41.49 2.85
1152 4073 3.617288 CGATCATTCTCAGTTGGGTGTCA 60.617 47.826 0.00 0.00 0.00 3.58
1187 4108 6.879367 AATCATGTTCATCCAGGGATTTTT 57.121 33.333 0.00 0.00 31.62 1.94
1191 4112 4.169461 AGGAAATCATGTTCATCCAGGGAT 59.831 41.667 0.00 0.00 34.81 3.85
1201 4123 9.956720 CTACATGGATTAAAGGAAATCATGTTC 57.043 33.333 10.59 0.00 37.93 3.18
1284 4206 3.433306 ACCATCACAAATCGAAGGGAA 57.567 42.857 0.00 0.00 0.00 3.97
1292 4214 7.807977 AGAACACCATATACCATCACAAATC 57.192 36.000 0.00 0.00 0.00 2.17
1309 4231 2.473816 GCAAAGGCAAGAAAGAACACC 58.526 47.619 0.00 0.00 40.72 4.16
1480 4402 4.671569 GCTATGAGCGCTCCGGGG 62.672 72.222 33.23 20.64 0.00 5.73
1486 4408 1.300465 CATGTCGGCTATGAGCGCT 60.300 57.895 11.27 11.27 43.62 5.92
1586 4512 2.923426 TAGCGCAAGGGAAGCATCGG 62.923 60.000 11.47 0.00 38.28 4.18
1596 4522 1.336702 TGGTGCAAATTTAGCGCAAGG 60.337 47.619 11.47 0.00 43.94 3.61
1619 4545 1.273327 GGAAAACAATCCCCTGCAGTG 59.727 52.381 13.81 6.33 33.05 3.66
1824 4750 3.003173 CTCTCCTTGGGGTGCCGA 61.003 66.667 0.00 0.00 0.00 5.54
2195 5121 3.439129 TGATCATGCTTTTCACTCTGCAG 59.561 43.478 7.63 7.63 38.87 4.41
2208 5134 4.449131 ACAATCATCGAGTTGATCATGCT 58.551 39.130 13.01 0.00 35.29 3.79
2245 5171 9.091784 TGAACAATCATCGATTTTCAACAAAAA 57.908 25.926 0.00 0.00 40.98 1.94
2246 5172 8.640091 TGAACAATCATCGATTTTCAACAAAA 57.360 26.923 0.00 0.00 35.92 2.44
2247 5173 8.815141 ATGAACAATCATCGATTTTCAACAAA 57.185 26.923 0.00 0.00 42.75 2.83
2262 5188 6.369615 CGCCATATATGTCAGATGAACAATCA 59.630 38.462 11.73 0.00 40.57 2.57
2263 5189 6.591448 TCGCCATATATGTCAGATGAACAATC 59.409 38.462 11.73 0.00 35.29 2.67
2264 5190 6.466812 TCGCCATATATGTCAGATGAACAAT 58.533 36.000 11.73 0.00 0.00 2.71
2265 5191 5.852827 TCGCCATATATGTCAGATGAACAA 58.147 37.500 11.73 0.00 0.00 2.83
2266 5192 5.467035 TCGCCATATATGTCAGATGAACA 57.533 39.130 11.73 0.00 0.00 3.18
2267 5193 5.871524 ACATCGCCATATATGTCAGATGAAC 59.128 40.000 29.11 6.60 36.00 3.18
2268 5194 6.041423 ACATCGCCATATATGTCAGATGAA 57.959 37.500 29.11 6.71 36.00 2.57
2269 5195 5.665916 ACATCGCCATATATGTCAGATGA 57.334 39.130 29.11 14.13 36.00 2.92
2270 5196 6.369615 TCAAACATCGCCATATATGTCAGATG 59.630 38.462 24.92 24.92 35.30 2.90
2271 5197 6.466812 TCAAACATCGCCATATATGTCAGAT 58.533 36.000 11.73 9.69 35.30 2.90
2272 5198 5.852827 TCAAACATCGCCATATATGTCAGA 58.147 37.500 11.73 7.96 35.30 3.27
2389 5318 4.459331 CCGCCACCGTTGCAATCG 62.459 66.667 0.59 8.41 0.00 3.34
2950 5885 1.429930 TCAGGCTGTTCACCAGGTTA 58.570 50.000 15.27 0.00 41.81 2.85
2959 5894 1.338200 ACCTTGACGATCAGGCTGTTC 60.338 52.381 15.27 14.72 0.00 3.18
3043 5978 3.002144 GCCAGTAGTAGTAGTCGTAGTGC 59.998 52.174 0.00 0.00 0.00 4.40
3158 6096 2.726351 CCCTCTCGCCTTCACCCTC 61.726 68.421 0.00 0.00 0.00 4.30
3159 6097 2.685380 CCCTCTCGCCTTCACCCT 60.685 66.667 0.00 0.00 0.00 4.34
3160 6098 2.291043 TTCCCTCTCGCCTTCACCC 61.291 63.158 0.00 0.00 0.00 4.61
3169 6107 4.493747 GTCGGCCGTTCCCTCTCG 62.494 72.222 27.15 0.00 0.00 4.04
3186 6124 3.006940 TCAGCATTACAAAACTAGGCCG 58.993 45.455 0.00 0.00 0.00 6.13
3317 6256 3.638484 GGGAACTTTGAAACATTGACCG 58.362 45.455 0.00 0.00 0.00 4.79
3321 6260 2.288763 CCCCGGGAACTTTGAAACATTG 60.289 50.000 26.32 0.00 0.00 2.82
3385 6333 3.119173 TCCAAAAGAACAACAACTGCAGG 60.119 43.478 19.93 3.21 0.00 4.85
3388 6336 5.351189 ACATTTCCAAAAGAACAACAACTGC 59.649 36.000 0.00 0.00 32.95 4.40
3390 6340 7.977789 AAACATTTCCAAAAGAACAACAACT 57.022 28.000 0.00 0.00 32.95 3.16
3394 6344 7.762159 TGAGGTAAACATTTCCAAAAGAACAAC 59.238 33.333 0.00 0.00 32.95 3.32
3397 6347 8.887036 AATGAGGTAAACATTTCCAAAAGAAC 57.113 30.769 0.00 0.00 34.86 3.01
3400 6350 7.670364 AGGAATGAGGTAAACATTTCCAAAAG 58.330 34.615 0.00 0.00 37.96 2.27
3462 6413 7.274904 CGTTAGTTGAAATTAGATGACCGAAGA 59.725 37.037 0.00 0.00 0.00 2.87
3493 6444 6.100404 ACCAATCACAAAAATATGCTGTGT 57.900 33.333 10.31 0.00 41.01 3.72
3496 6447 9.976255 CATTTAACCAATCACAAAAATATGCTG 57.024 29.630 0.00 0.00 0.00 4.41
3526 6477 8.810652 AACACAACGCAAACTTTATGATTTAT 57.189 26.923 0.00 0.00 0.00 1.40
3527 6478 8.635877 AAACACAACGCAAACTTTATGATTTA 57.364 26.923 0.00 0.00 0.00 1.40
3528 6479 7.532682 AAACACAACGCAAACTTTATGATTT 57.467 28.000 0.00 0.00 0.00 2.17
3558 9703 1.458639 AACCCTTCAGCTGCTGTTGC 61.459 55.000 27.24 0.00 40.20 4.17
3560 9705 1.780503 AAAACCCTTCAGCTGCTGTT 58.219 45.000 27.24 12.52 32.61 3.16
3561 9706 1.780503 AAAAACCCTTCAGCTGCTGT 58.219 45.000 27.24 6.72 32.61 4.40
3584 9729 3.735240 CAGCTGCTGTTATTTCGCAAAAA 59.265 39.130 21.21 0.00 32.66 1.94
3585 9730 3.004210 TCAGCTGCTGTTATTTCGCAAAA 59.996 39.130 27.24 2.21 32.66 2.44
3586 9731 2.551887 TCAGCTGCTGTTATTTCGCAAA 59.448 40.909 27.24 2.42 32.66 3.68
3587 9732 2.150390 TCAGCTGCTGTTATTTCGCAA 58.850 42.857 27.24 2.95 32.66 4.85
3588 9733 1.807139 TCAGCTGCTGTTATTTCGCA 58.193 45.000 27.24 3.70 32.61 5.10
3589 9734 2.160417 ACTTCAGCTGCTGTTATTTCGC 59.840 45.455 27.24 0.00 32.61 4.70
3590 9735 4.410492 AACTTCAGCTGCTGTTATTTCG 57.590 40.909 27.24 12.09 32.61 3.46
3591 9736 9.657121 GATATTAACTTCAGCTGCTGTTATTTC 57.343 33.333 27.24 17.43 32.61 2.17
3592 9737 8.338259 CGATATTAACTTCAGCTGCTGTTATTT 58.662 33.333 27.24 18.18 32.61 1.40
3593 9738 7.710907 TCGATATTAACTTCAGCTGCTGTTATT 59.289 33.333 27.24 20.36 32.61 1.40
3594 9739 7.210174 TCGATATTAACTTCAGCTGCTGTTAT 58.790 34.615 27.24 15.18 32.61 1.89
3595 9740 6.569780 TCGATATTAACTTCAGCTGCTGTTA 58.430 36.000 27.24 20.00 32.61 2.41
3601 9746 7.616673 CAAGTCTTCGATATTAACTTCAGCTG 58.383 38.462 7.63 7.63 0.00 4.24
3615 9760 1.478510 AGACATCGGCAAGTCTTCGAT 59.521 47.619 3.91 3.91 42.12 3.59
3626 9771 2.614057 CCCTCATGTTTTAGACATCGGC 59.386 50.000 0.00 0.00 45.88 5.54
3627 9772 3.206150 CCCCTCATGTTTTAGACATCGG 58.794 50.000 0.00 0.00 45.88 4.18
3634 9779 5.741011 TGTAAGTAGCCCCTCATGTTTTAG 58.259 41.667 0.00 0.00 0.00 1.85
3639 9784 3.117888 CCAATGTAAGTAGCCCCTCATGT 60.118 47.826 0.00 0.00 0.00 3.21
3707 9852 6.331572 TCCCCCTTATGATATGCTGAAACTTA 59.668 38.462 0.00 0.00 0.00 2.24
3727 9872 4.139234 GTAGTGTCGCCGTCCCCC 62.139 72.222 0.00 0.00 0.00 5.40
3760 10061 5.105997 GCCATAGGGAAAAGCATAAGCATAG 60.106 44.000 0.00 0.00 39.12 2.23
3884 10200 6.374333 GTCAGCTAATAATTTTGTCCTGGACA 59.626 38.462 25.12 25.12 41.09 4.02
3886 10202 6.374333 GTGTCAGCTAATAATTTTGTCCTGGA 59.626 38.462 0.00 0.00 0.00 3.86
3887 10203 6.375455 AGTGTCAGCTAATAATTTTGTCCTGG 59.625 38.462 0.00 0.00 0.00 4.45
3891 10207 6.846350 AGCAGTGTCAGCTAATAATTTTGTC 58.154 36.000 0.00 0.00 41.32 3.18
3978 10300 2.675844 GGCAGCACATTATACGTCAACA 59.324 45.455 0.00 0.00 0.00 3.33
3979 10301 2.936498 AGGCAGCACATTATACGTCAAC 59.064 45.455 0.00 0.00 0.00 3.18
3980 10302 3.260475 AGGCAGCACATTATACGTCAA 57.740 42.857 0.00 0.00 0.00 3.18
3981 10303 2.979814 AGGCAGCACATTATACGTCA 57.020 45.000 0.00 0.00 0.00 4.35
3982 10304 3.978687 ACTAGGCAGCACATTATACGTC 58.021 45.455 0.00 0.00 0.00 4.34
3983 10305 3.637229 AGACTAGGCAGCACATTATACGT 59.363 43.478 0.00 0.00 0.00 3.57
3984 10306 4.022762 AGAGACTAGGCAGCACATTATACG 60.023 45.833 0.00 0.00 0.00 3.06
3985 10307 5.461032 AGAGACTAGGCAGCACATTATAC 57.539 43.478 0.00 0.00 0.00 1.47
3986 10308 5.011125 GGAAGAGACTAGGCAGCACATTATA 59.989 44.000 0.00 0.00 0.00 0.98
3987 10309 4.202305 GGAAGAGACTAGGCAGCACATTAT 60.202 45.833 0.00 0.00 0.00 1.28
3988 10310 3.133003 GGAAGAGACTAGGCAGCACATTA 59.867 47.826 0.00 0.00 0.00 1.90
3989 10311 2.093235 GGAAGAGACTAGGCAGCACATT 60.093 50.000 0.00 0.00 0.00 2.71
3990 10312 1.484240 GGAAGAGACTAGGCAGCACAT 59.516 52.381 0.00 0.00 0.00 3.21
3991 10313 0.898320 GGAAGAGACTAGGCAGCACA 59.102 55.000 0.00 0.00 0.00 4.57
3992 10314 0.898320 TGGAAGAGACTAGGCAGCAC 59.102 55.000 0.00 0.00 0.00 4.40
3993 10315 1.759445 GATGGAAGAGACTAGGCAGCA 59.241 52.381 0.00 0.00 0.00 4.41
3994 10316 1.759445 TGATGGAAGAGACTAGGCAGC 59.241 52.381 0.00 0.00 0.00 5.25
3995 10317 4.478206 TTTGATGGAAGAGACTAGGCAG 57.522 45.455 0.00 0.00 0.00 4.85
3996 10318 4.442052 CGATTTGATGGAAGAGACTAGGCA 60.442 45.833 0.00 0.00 0.00 4.75
3997 10319 4.054671 CGATTTGATGGAAGAGACTAGGC 58.945 47.826 0.00 0.00 0.00 3.93
3998 10320 4.100189 ACCGATTTGATGGAAGAGACTAGG 59.900 45.833 0.00 0.00 0.00 3.02
3999 10321 5.269505 ACCGATTTGATGGAAGAGACTAG 57.730 43.478 0.00 0.00 0.00 2.57
4000 10322 5.677319 AACCGATTTGATGGAAGAGACTA 57.323 39.130 0.00 0.00 0.00 2.59
4001 10323 4.559862 AACCGATTTGATGGAAGAGACT 57.440 40.909 0.00 0.00 0.00 3.24
4002 10324 5.629079 AAAACCGATTTGATGGAAGAGAC 57.371 39.130 0.00 0.00 0.00 3.36
4022 10344 3.057315 GCTCTAGCCAGTGCAATCAAAAA 60.057 43.478 1.18 0.00 40.31 1.94
4023 10345 2.489329 GCTCTAGCCAGTGCAATCAAAA 59.511 45.455 1.18 0.00 40.31 2.44
4024 10346 2.086869 GCTCTAGCCAGTGCAATCAAA 58.913 47.619 1.18 0.00 40.31 2.69
4025 10347 1.003464 TGCTCTAGCCAGTGCAATCAA 59.997 47.619 6.42 0.00 45.63 2.57
4026 10348 0.614812 TGCTCTAGCCAGTGCAATCA 59.385 50.000 6.42 0.00 45.63 2.57
4027 10349 3.465990 TGCTCTAGCCAGTGCAATC 57.534 52.632 6.42 0.00 45.63 2.67
4031 10353 1.450848 TGCATGCTCTAGCCAGTGC 60.451 57.895 20.33 13.75 40.70 4.40
4032 10354 0.107800 AGTGCATGCTCTAGCCAGTG 60.108 55.000 20.22 0.00 41.18 3.66
4033 10355 0.617413 AAGTGCATGCTCTAGCCAGT 59.383 50.000 21.70 3.24 41.18 4.00
4034 10356 1.747709 AAAGTGCATGCTCTAGCCAG 58.252 50.000 21.70 0.00 41.18 4.85
4035 10357 2.205022 AAAAGTGCATGCTCTAGCCA 57.795 45.000 21.70 0.00 41.18 4.75
4036 10358 3.009723 TGTAAAAGTGCATGCTCTAGCC 58.990 45.455 21.70 11.06 41.18 3.93
4037 10359 4.333649 TCATGTAAAAGTGCATGCTCTAGC 59.666 41.667 21.70 12.53 44.83 3.42
4038 10360 6.615264 ATCATGTAAAAGTGCATGCTCTAG 57.385 37.500 21.70 7.23 44.83 2.43
4039 10361 7.933033 TGATATCATGTAAAAGTGCATGCTCTA 59.067 33.333 21.70 7.14 44.83 2.43
4040 10362 6.769341 TGATATCATGTAAAAGTGCATGCTCT 59.231 34.615 20.33 18.23 44.83 4.09
4041 10363 6.962686 TGATATCATGTAAAAGTGCATGCTC 58.037 36.000 20.33 15.94 44.83 4.26
4042 10364 6.769341 TCTGATATCATGTAAAAGTGCATGCT 59.231 34.615 20.33 0.00 44.83 3.79
4043 10365 6.962686 TCTGATATCATGTAAAAGTGCATGC 58.037 36.000 11.82 11.82 44.83 4.06
4044 10366 7.076362 GCTCTGATATCATGTAAAAGTGCATG 58.924 38.462 5.72 0.00 46.11 4.06
4045 10367 6.206243 GGCTCTGATATCATGTAAAAGTGCAT 59.794 38.462 5.72 0.00 0.00 3.96
4046 10368 5.528690 GGCTCTGATATCATGTAAAAGTGCA 59.471 40.000 5.72 0.00 0.00 4.57
4047 10369 5.528690 TGGCTCTGATATCATGTAAAAGTGC 59.471 40.000 5.72 5.28 0.00 4.40
4048 10370 7.496920 TCTTGGCTCTGATATCATGTAAAAGTG 59.503 37.037 5.72 0.00 0.00 3.16
4049 10371 7.568349 TCTTGGCTCTGATATCATGTAAAAGT 58.432 34.615 5.72 0.00 0.00 2.66
4050 10372 7.172875 CCTCTTGGCTCTGATATCATGTAAAAG 59.827 40.741 5.72 8.25 0.00 2.27
4051 10373 6.994496 CCTCTTGGCTCTGATATCATGTAAAA 59.006 38.462 5.72 0.00 0.00 1.52
4052 10374 6.100279 ACCTCTTGGCTCTGATATCATGTAAA 59.900 38.462 5.72 0.00 36.63 2.01
4053 10375 5.604231 ACCTCTTGGCTCTGATATCATGTAA 59.396 40.000 5.72 2.75 36.63 2.41
4054 10376 5.150715 ACCTCTTGGCTCTGATATCATGTA 58.849 41.667 5.72 0.00 36.63 2.29
4055 10377 3.972638 ACCTCTTGGCTCTGATATCATGT 59.027 43.478 5.72 0.00 36.63 3.21
4056 10378 4.283978 AGACCTCTTGGCTCTGATATCATG 59.716 45.833 5.72 3.81 36.63 3.07
4057 10379 4.491675 AGACCTCTTGGCTCTGATATCAT 58.508 43.478 5.72 0.00 36.63 2.45
4058 10380 3.921104 AGACCTCTTGGCTCTGATATCA 58.079 45.455 5.07 5.07 36.63 2.15
4059 10381 4.953940 AAGACCTCTTGGCTCTGATATC 57.046 45.455 0.00 0.00 34.38 1.63
4079 10401 1.202806 CCAGCTGGGTCTTGAACTCAA 60.203 52.381 26.14 0.00 38.10 3.02
4080 10402 0.397941 CCAGCTGGGTCTTGAACTCA 59.602 55.000 26.14 0.00 35.41 3.41
4081 10403 0.957888 GCCAGCTGGGTCTTGAACTC 60.958 60.000 33.46 9.38 39.65 3.01
4082 10404 1.073897 GCCAGCTGGGTCTTGAACT 59.926 57.895 33.46 0.00 39.65 3.01
4083 10405 2.328099 CGCCAGCTGGGTCTTGAAC 61.328 63.158 33.46 13.42 39.65 3.18
4084 10406 2.032528 CGCCAGCTGGGTCTTGAA 59.967 61.111 33.46 0.00 39.65 2.69
4085 10407 4.704833 GCGCCAGCTGGGTCTTGA 62.705 66.667 33.46 0.00 41.01 3.02
4087 10409 3.574074 ATTGCGCCAGCTGGGTCTT 62.574 57.895 33.46 9.81 45.42 3.01
4088 10410 2.196997 TAATTGCGCCAGCTGGGTCT 62.197 55.000 33.46 11.77 45.42 3.85
4089 10411 1.312371 TTAATTGCGCCAGCTGGGTC 61.312 55.000 33.46 17.18 45.42 4.46
4090 10412 0.897863 TTTAATTGCGCCAGCTGGGT 60.898 50.000 33.46 10.48 45.42 4.51
4091 10413 0.461135 ATTTAATTGCGCCAGCTGGG 59.539 50.000 33.46 23.40 45.42 4.45
4092 10414 1.928503 CAATTTAATTGCGCCAGCTGG 59.071 47.619 29.34 29.34 45.42 4.85
4102 10424 4.091800 CGAAAGTGGGCTGCAATTTAATTG 59.908 41.667 12.84 12.84 43.06 2.32
4103 10425 4.021544 TCGAAAGTGGGCTGCAATTTAATT 60.022 37.500 0.50 0.00 0.00 1.40
4104 10426 3.509575 TCGAAAGTGGGCTGCAATTTAAT 59.490 39.130 0.50 0.00 0.00 1.40
4105 10427 2.887783 TCGAAAGTGGGCTGCAATTTAA 59.112 40.909 0.50 0.00 0.00 1.52
4106 10428 2.509569 TCGAAAGTGGGCTGCAATTTA 58.490 42.857 0.50 0.00 0.00 1.40
4107 10429 1.327303 TCGAAAGTGGGCTGCAATTT 58.673 45.000 0.50 0.00 0.00 1.82
4108 10430 1.474077 GATCGAAAGTGGGCTGCAATT 59.526 47.619 0.50 0.00 0.00 2.32
4109 10431 1.098050 GATCGAAAGTGGGCTGCAAT 58.902 50.000 0.50 0.00 0.00 3.56
4110 10432 0.960364 GGATCGAAAGTGGGCTGCAA 60.960 55.000 0.50 0.00 0.00 4.08
4111 10433 1.377202 GGATCGAAAGTGGGCTGCA 60.377 57.895 0.50 0.00 0.00 4.41
4112 10434 1.377202 TGGATCGAAAGTGGGCTGC 60.377 57.895 0.00 0.00 0.00 5.25
4113 10435 1.361668 CGTGGATCGAAAGTGGGCTG 61.362 60.000 0.00 0.00 42.86 4.85
4114 10436 1.079127 CGTGGATCGAAAGTGGGCT 60.079 57.895 0.00 0.00 42.86 5.19
4115 10437 0.953960 AACGTGGATCGAAAGTGGGC 60.954 55.000 0.00 0.00 42.86 5.36
4116 10438 1.519408 AAACGTGGATCGAAAGTGGG 58.481 50.000 0.00 0.00 42.86 4.61
4117 10439 2.671396 CCTAAACGTGGATCGAAAGTGG 59.329 50.000 0.00 0.00 42.86 4.00
4118 10440 2.093783 GCCTAAACGTGGATCGAAAGTG 59.906 50.000 0.00 0.00 42.86 3.16
4119 10441 2.344025 GCCTAAACGTGGATCGAAAGT 58.656 47.619 0.00 0.00 42.86 2.66
4120 10442 1.664151 GGCCTAAACGTGGATCGAAAG 59.336 52.381 0.00 0.00 42.86 2.62
4121 10443 1.276989 AGGCCTAAACGTGGATCGAAA 59.723 47.619 1.29 0.00 42.86 3.46
4122 10444 0.899720 AGGCCTAAACGTGGATCGAA 59.100 50.000 1.29 0.00 42.86 3.71
4123 10445 0.174845 CAGGCCTAAACGTGGATCGA 59.825 55.000 3.98 0.00 42.86 3.59
4124 10446 0.174845 TCAGGCCTAAACGTGGATCG 59.825 55.000 3.98 0.00 46.00 3.69
4125 10447 2.280628 CTTCAGGCCTAAACGTGGATC 58.719 52.381 3.98 0.00 0.00 3.36
4126 10448 1.065418 CCTTCAGGCCTAAACGTGGAT 60.065 52.381 3.98 0.00 0.00 3.41
4127 10449 0.323629 CCTTCAGGCCTAAACGTGGA 59.676 55.000 3.98 0.00 0.00 4.02
4128 10450 0.323629 TCCTTCAGGCCTAAACGTGG 59.676 55.000 3.98 0.00 34.44 4.94
4129 10451 1.726853 CTCCTTCAGGCCTAAACGTG 58.273 55.000 3.98 0.00 34.44 4.49
4130 10452 0.036294 GCTCCTTCAGGCCTAAACGT 60.036 55.000 3.98 0.00 34.44 3.99
4131 10453 0.744771 GGCTCCTTCAGGCCTAAACG 60.745 60.000 3.98 0.00 44.48 3.60
4132 10454 3.176728 GGCTCCTTCAGGCCTAAAC 57.823 57.895 3.98 0.00 44.48 2.01
4139 10461 1.669115 CACGTGTGGCTCCTTCAGG 60.669 63.158 7.58 0.00 0.00 3.86
4140 10462 0.249868 TTCACGTGTGGCTCCTTCAG 60.250 55.000 16.51 0.00 0.00 3.02
4141 10463 0.249868 CTTCACGTGTGGCTCCTTCA 60.250 55.000 16.51 0.00 0.00 3.02
4142 10464 0.951040 CCTTCACGTGTGGCTCCTTC 60.951 60.000 16.51 0.00 0.00 3.46
4143 10465 1.071471 CCTTCACGTGTGGCTCCTT 59.929 57.895 16.51 0.00 0.00 3.36
4144 10466 2.743718 CCTTCACGTGTGGCTCCT 59.256 61.111 16.51 0.00 0.00 3.69
4145 10467 2.358737 CCCTTCACGTGTGGCTCC 60.359 66.667 16.51 0.00 0.00 4.70
4146 10468 2.358737 CCCCTTCACGTGTGGCTC 60.359 66.667 16.51 0.00 0.00 4.70
4147 10469 2.847234 TCCCCTTCACGTGTGGCT 60.847 61.111 16.51 0.00 0.00 4.75
4148 10470 2.358737 CTCCCCTTCACGTGTGGC 60.359 66.667 16.51 0.00 0.00 5.01
4149 10471 1.301716 CACTCCCCTTCACGTGTGG 60.302 63.158 16.51 17.81 0.00 4.17
4150 10472 0.179056 AACACTCCCCTTCACGTGTG 60.179 55.000 16.51 9.72 40.19 3.82
4151 10473 0.179056 CAACACTCCCCTTCACGTGT 60.179 55.000 16.51 0.00 41.92 4.49
4152 10474 0.105964 TCAACACTCCCCTTCACGTG 59.894 55.000 9.94 9.94 0.00 4.49
4153 10475 0.106149 GTCAACACTCCCCTTCACGT 59.894 55.000 0.00 0.00 0.00 4.49
4154 10476 0.944311 CGTCAACACTCCCCTTCACG 60.944 60.000 0.00 0.00 0.00 4.35
4155 10477 0.106149 ACGTCAACACTCCCCTTCAC 59.894 55.000 0.00 0.00 0.00 3.18
4156 10478 1.707106 TACGTCAACACTCCCCTTCA 58.293 50.000 0.00 0.00 0.00 3.02
4157 10479 4.460948 TTATACGTCAACACTCCCCTTC 57.539 45.455 0.00 0.00 0.00 3.46
4158 10480 4.224370 ACATTATACGTCAACACTCCCCTT 59.776 41.667 0.00 0.00 0.00 3.95
4159 10481 3.773119 ACATTATACGTCAACACTCCCCT 59.227 43.478 0.00 0.00 0.00 4.79
4160 10482 3.869246 CACATTATACGTCAACACTCCCC 59.131 47.826 0.00 0.00 0.00 4.81
4161 10483 3.308866 GCACATTATACGTCAACACTCCC 59.691 47.826 0.00 0.00 0.00 4.30
4162 10484 4.032900 CAGCACATTATACGTCAACACTCC 59.967 45.833 0.00 0.00 0.00 3.85
4163 10485 4.492570 GCAGCACATTATACGTCAACACTC 60.493 45.833 0.00 0.00 0.00 3.51
4164 10486 3.370978 GCAGCACATTATACGTCAACACT 59.629 43.478 0.00 0.00 0.00 3.55
4165 10487 3.485216 GGCAGCACATTATACGTCAACAC 60.485 47.826 0.00 0.00 0.00 3.32
4166 10488 2.675844 GGCAGCACATTATACGTCAACA 59.324 45.455 0.00 0.00 0.00 3.33
4167 10489 2.936498 AGGCAGCACATTATACGTCAAC 59.064 45.455 0.00 0.00 0.00 3.18
4168 10490 3.260475 AGGCAGCACATTATACGTCAA 57.740 42.857 0.00 0.00 0.00 3.18
4169 10491 2.979814 AGGCAGCACATTATACGTCA 57.020 45.000 0.00 0.00 0.00 4.35
4170 10492 3.978687 ACTAGGCAGCACATTATACGTC 58.021 45.455 0.00 0.00 0.00 4.34
4171 10493 3.637229 AGACTAGGCAGCACATTATACGT 59.363 43.478 0.00 0.00 0.00 3.57
4172 10494 4.244425 AGACTAGGCAGCACATTATACG 57.756 45.455 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.