Multiple sequence alignment - TraesCS3A01G303700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G303700 chr3A 100.000 2174 0 0 1 2174 538010681 538012854 0.000000e+00 4015
1 TraesCS3A01G303700 chr3B 90.856 864 32 16 664 1495 539068235 539067387 0.000000e+00 1114
2 TraesCS3A01G303700 chr3B 86.335 644 45 19 1546 2174 539067375 539066760 0.000000e+00 662
3 TraesCS3A01G303700 chr3D 89.784 832 31 12 695 1491 412092039 412091227 0.000000e+00 1016
4 TraesCS3A01G303700 chr3D 92.702 507 23 6 1682 2174 412090711 412090205 0.000000e+00 719
5 TraesCS3A01G303700 chr3D 94.828 116 6 0 290 405 302930195 302930310 4.770000e-42 182
6 TraesCS3A01G303700 chr2A 96.296 108 4 0 289 396 718935041 718934934 6.170000e-41 178
7 TraesCS3A01G303700 chr2A 91.200 125 9 2 274 396 63693689 63693565 3.710000e-38 169
8 TraesCS3A01G303700 chr1A 94.017 117 7 0 280 396 441770486 441770370 6.170000e-41 178
9 TraesCS3A01G303700 chr7A 94.690 113 6 0 284 396 381253917 381254029 2.220000e-40 176
10 TraesCS3A01G303700 chr5D 93.913 115 7 0 283 397 181880037 181880151 7.980000e-40 174
11 TraesCS3A01G303700 chr1D 93.966 116 6 1 283 397 247521072 247520957 7.980000e-40 174
12 TraesCS3A01G303700 chr5B 92.500 120 9 0 277 396 278886867 278886986 2.870000e-39 172
13 TraesCS3A01G303700 chr6A 91.803 122 10 0 276 397 12457465 12457586 1.030000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G303700 chr3A 538010681 538012854 2173 False 4015.0 4015 100.0000 1 2174 1 chr3A.!!$F1 2173
1 TraesCS3A01G303700 chr3B 539066760 539068235 1475 True 888.0 1114 88.5955 664 2174 2 chr3B.!!$R1 1510
2 TraesCS3A01G303700 chr3D 412090205 412092039 1834 True 867.5 1016 91.2430 695 2174 2 chr3D.!!$R1 1479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 270 0.10576 TTGCAGGGGTCCACAAATGT 60.106 50.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1345 0.312102 CGCAGCTCAGTCCATCGATA 59.688 55.0 0.0 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.659111 TTTGTGAAACTACGAGAGACCA 57.341 40.909 0.00 0.00 38.04 4.02
22 23 4.659111 TTGTGAAACTACGAGAGACCAA 57.341 40.909 0.00 0.00 38.04 3.67
23 24 4.659111 TGTGAAACTACGAGAGACCAAA 57.341 40.909 0.00 0.00 38.04 3.28
24 25 4.365723 TGTGAAACTACGAGAGACCAAAC 58.634 43.478 0.00 0.00 38.04 2.93
25 26 3.424529 GTGAAACTACGAGAGACCAAACG 59.575 47.826 0.00 0.00 0.00 3.60
26 27 3.067180 TGAAACTACGAGAGACCAAACGT 59.933 43.478 0.00 0.00 41.66 3.99
27 28 4.275689 TGAAACTACGAGAGACCAAACGTA 59.724 41.667 0.00 0.00 39.59 3.57
28 29 4.836125 AACTACGAGAGACCAAACGTAA 57.164 40.909 0.00 0.00 39.91 3.18
29 30 4.416505 ACTACGAGAGACCAAACGTAAG 57.583 45.455 0.00 0.00 39.91 2.34
63 64 9.733556 AATCTTGAAGGTTTTTAAAAAGGTTGT 57.266 25.926 13.58 0.00 0.00 3.32
64 65 8.541133 TCTTGAAGGTTTTTAAAAAGGTTGTG 57.459 30.769 13.58 3.14 0.00 3.33
65 66 8.151596 TCTTGAAGGTTTTTAAAAAGGTTGTGT 58.848 29.630 13.58 0.00 0.00 3.72
66 67 7.659652 TGAAGGTTTTTAAAAAGGTTGTGTG 57.340 32.000 13.58 0.00 0.00 3.82
67 68 7.442656 TGAAGGTTTTTAAAAAGGTTGTGTGA 58.557 30.769 13.58 0.00 0.00 3.58
68 69 7.600752 TGAAGGTTTTTAAAAAGGTTGTGTGAG 59.399 33.333 13.58 0.00 0.00 3.51
69 70 7.234661 AGGTTTTTAAAAAGGTTGTGTGAGA 57.765 32.000 13.58 0.00 0.00 3.27
70 71 7.847096 AGGTTTTTAAAAAGGTTGTGTGAGAT 58.153 30.769 13.58 0.00 0.00 2.75
71 72 7.763985 AGGTTTTTAAAAAGGTTGTGTGAGATG 59.236 33.333 13.58 0.00 0.00 2.90
72 73 7.398746 GTTTTTAAAAAGGTTGTGTGAGATGC 58.601 34.615 13.58 0.00 0.00 3.91
73 74 3.733443 AAAAAGGTTGTGTGAGATGCC 57.267 42.857 0.00 0.00 0.00 4.40
74 75 1.620822 AAAGGTTGTGTGAGATGCCC 58.379 50.000 0.00 0.00 0.00 5.36
75 76 0.478072 AAGGTTGTGTGAGATGCCCA 59.522 50.000 0.00 0.00 0.00 5.36
76 77 0.700564 AGGTTGTGTGAGATGCCCAT 59.299 50.000 0.00 0.00 0.00 4.00
77 78 1.098050 GGTTGTGTGAGATGCCCATC 58.902 55.000 0.00 0.00 38.09 3.51
86 87 2.431954 AGATGCCCATCTCAAAGGTG 57.568 50.000 4.98 0.00 44.37 4.00
87 88 1.918262 AGATGCCCATCTCAAAGGTGA 59.082 47.619 4.98 0.00 44.37 4.02
88 89 2.512896 AGATGCCCATCTCAAAGGTGAT 59.487 45.455 4.98 0.00 44.37 3.06
89 90 3.718434 AGATGCCCATCTCAAAGGTGATA 59.282 43.478 4.98 0.00 44.37 2.15
90 91 4.166725 AGATGCCCATCTCAAAGGTGATAA 59.833 41.667 4.98 0.00 44.37 1.75
91 92 3.620488 TGCCCATCTCAAAGGTGATAAC 58.380 45.455 0.00 0.00 31.85 1.89
92 93 3.266772 TGCCCATCTCAAAGGTGATAACT 59.733 43.478 0.00 0.00 31.85 2.24
93 94 4.263905 TGCCCATCTCAAAGGTGATAACTT 60.264 41.667 0.00 0.00 31.85 2.66
94 95 5.045213 TGCCCATCTCAAAGGTGATAACTTA 60.045 40.000 0.00 0.00 31.85 2.24
95 96 5.885912 GCCCATCTCAAAGGTGATAACTTAA 59.114 40.000 0.00 0.00 31.85 1.85
96 97 6.547510 GCCCATCTCAAAGGTGATAACTTAAT 59.452 38.462 0.00 0.00 31.85 1.40
97 98 7.719633 GCCCATCTCAAAGGTGATAACTTAATA 59.280 37.037 0.00 0.00 31.85 0.98
98 99 9.799106 CCCATCTCAAAGGTGATAACTTAATAT 57.201 33.333 0.00 0.00 31.85 1.28
120 121 5.288543 TCATCGATACTCATGTGATCTCG 57.711 43.478 0.00 6.86 0.00 4.04
121 122 4.997395 TCATCGATACTCATGTGATCTCGA 59.003 41.667 16.74 16.74 37.95 4.04
122 123 4.999751 TCGATACTCATGTGATCTCGAG 57.000 45.455 5.93 5.93 0.00 4.04
123 124 3.187432 TCGATACTCATGTGATCTCGAGC 59.813 47.826 7.81 0.00 0.00 5.03
124 125 3.188254 CGATACTCATGTGATCTCGAGCT 59.812 47.826 7.81 0.00 0.00 4.09
125 126 4.668941 CGATACTCATGTGATCTCGAGCTC 60.669 50.000 7.81 8.66 0.00 4.09
126 127 1.680735 ACTCATGTGATCTCGAGCTCC 59.319 52.381 13.42 5.93 0.00 4.70
127 128 1.680207 CTCATGTGATCTCGAGCTCCA 59.320 52.381 13.42 10.94 0.00 3.86
128 129 2.100418 CTCATGTGATCTCGAGCTCCAA 59.900 50.000 13.42 2.48 0.00 3.53
129 130 2.697229 TCATGTGATCTCGAGCTCCAAT 59.303 45.455 13.42 4.66 0.00 3.16
130 131 2.591571 TGTGATCTCGAGCTCCAATG 57.408 50.000 13.42 0.00 0.00 2.82
131 132 2.102578 TGTGATCTCGAGCTCCAATGA 58.897 47.619 13.42 1.64 0.00 2.57
132 133 2.697229 TGTGATCTCGAGCTCCAATGAT 59.303 45.455 13.42 6.63 0.00 2.45
133 134 3.243670 TGTGATCTCGAGCTCCAATGATC 60.244 47.826 13.42 14.97 0.00 2.92
134 135 2.298446 TGATCTCGAGCTCCAATGATCC 59.702 50.000 13.42 10.20 32.00 3.36
135 136 2.079170 TCTCGAGCTCCAATGATCCT 57.921 50.000 7.81 0.00 0.00 3.24
136 137 3.229697 TCTCGAGCTCCAATGATCCTA 57.770 47.619 7.81 0.00 0.00 2.94
137 138 3.153130 TCTCGAGCTCCAATGATCCTAG 58.847 50.000 7.81 0.00 0.00 3.02
138 139 3.153130 CTCGAGCTCCAATGATCCTAGA 58.847 50.000 8.47 0.00 0.00 2.43
139 140 3.763360 CTCGAGCTCCAATGATCCTAGAT 59.237 47.826 8.47 0.00 0.00 1.98
140 141 3.509184 TCGAGCTCCAATGATCCTAGATG 59.491 47.826 8.47 0.00 0.00 2.90
141 142 3.509184 CGAGCTCCAATGATCCTAGATGA 59.491 47.826 8.47 0.00 0.00 2.92
142 143 4.021632 CGAGCTCCAATGATCCTAGATGAA 60.022 45.833 8.47 0.00 0.00 2.57
143 144 5.226194 AGCTCCAATGATCCTAGATGAAC 57.774 43.478 0.00 0.00 0.00 3.18
144 145 4.657504 AGCTCCAATGATCCTAGATGAACA 59.342 41.667 0.00 0.00 0.00 3.18
145 146 4.996122 GCTCCAATGATCCTAGATGAACAG 59.004 45.833 0.00 0.00 0.00 3.16
146 147 5.454471 GCTCCAATGATCCTAGATGAACAGT 60.454 44.000 0.00 0.00 0.00 3.55
147 148 6.239430 GCTCCAATGATCCTAGATGAACAGTA 60.239 42.308 0.00 0.00 0.00 2.74
148 149 7.675161 TCCAATGATCCTAGATGAACAGTAA 57.325 36.000 0.00 0.00 0.00 2.24
149 150 7.500992 TCCAATGATCCTAGATGAACAGTAAC 58.499 38.462 0.00 0.00 0.00 2.50
150 151 7.125659 TCCAATGATCCTAGATGAACAGTAACA 59.874 37.037 0.00 0.00 0.00 2.41
151 152 7.935755 CCAATGATCCTAGATGAACAGTAACAT 59.064 37.037 0.00 0.00 0.00 2.71
152 153 9.987272 CAATGATCCTAGATGAACAGTAACATA 57.013 33.333 0.00 0.00 0.00 2.29
155 156 9.817809 TGATCCTAGATGAACAGTAACATAAAC 57.182 33.333 0.00 0.00 0.00 2.01
156 157 9.817809 GATCCTAGATGAACAGTAACATAAACA 57.182 33.333 0.00 0.00 0.00 2.83
165 166 9.283768 TGAACAGTAACATAAACATTGATGTCT 57.716 29.630 0.00 0.00 40.80 3.41
167 168 9.897744 AACAGTAACATAAACATTGATGTCTTG 57.102 29.630 0.00 0.00 40.80 3.02
168 169 9.066892 ACAGTAACATAAACATTGATGTCTTGT 57.933 29.630 0.00 0.03 40.80 3.16
169 170 9.546909 CAGTAACATAAACATTGATGTCTTGTC 57.453 33.333 0.00 0.00 40.80 3.18
170 171 9.507329 AGTAACATAAACATTGATGTCTTGTCT 57.493 29.630 0.00 0.00 40.80 3.41
173 174 7.963981 ACATAAACATTGATGTCTTGTCTACG 58.036 34.615 0.00 0.00 40.80 3.51
174 175 7.602644 ACATAAACATTGATGTCTTGTCTACGT 59.397 33.333 0.00 0.00 40.80 3.57
175 176 5.845985 AACATTGATGTCTTGTCTACGTG 57.154 39.130 0.00 0.00 40.80 4.49
176 177 3.679980 ACATTGATGTCTTGTCTACGTGC 59.320 43.478 0.00 0.00 35.87 5.34
177 178 3.378911 TTGATGTCTTGTCTACGTGCA 57.621 42.857 0.00 0.00 0.00 4.57
178 179 3.592898 TGATGTCTTGTCTACGTGCAT 57.407 42.857 0.00 0.00 0.00 3.96
179 180 3.253230 TGATGTCTTGTCTACGTGCATG 58.747 45.455 3.82 3.82 0.00 4.06
180 181 1.428448 TGTCTTGTCTACGTGCATGC 58.572 50.000 11.82 11.82 0.00 4.06
181 182 1.270041 TGTCTTGTCTACGTGCATGCA 60.270 47.619 18.46 18.46 0.00 3.96
182 183 2.002586 GTCTTGTCTACGTGCATGCAT 58.997 47.619 25.64 11.73 0.00 3.96
183 184 2.416547 GTCTTGTCTACGTGCATGCATT 59.583 45.455 25.64 16.45 0.00 3.56
184 185 3.073678 TCTTGTCTACGTGCATGCATTT 58.926 40.909 25.64 16.07 0.00 2.32
185 186 3.501828 TCTTGTCTACGTGCATGCATTTT 59.498 39.130 25.64 13.44 0.00 1.82
186 187 3.913548 TGTCTACGTGCATGCATTTTT 57.086 38.095 25.64 10.85 0.00 1.94
209 210 5.720371 TTATGATTTTGTGAAGGTGTGGG 57.280 39.130 0.00 0.00 0.00 4.61
210 211 1.686052 TGATTTTGTGAAGGTGTGGGC 59.314 47.619 0.00 0.00 0.00 5.36
211 212 1.686052 GATTTTGTGAAGGTGTGGGCA 59.314 47.619 0.00 0.00 0.00 5.36
212 213 1.561643 TTTTGTGAAGGTGTGGGCAA 58.438 45.000 0.00 0.00 0.00 4.52
213 214 1.561643 TTTGTGAAGGTGTGGGCAAA 58.438 45.000 0.00 0.00 0.00 3.68
214 215 1.561643 TTGTGAAGGTGTGGGCAAAA 58.438 45.000 0.00 0.00 0.00 2.44
215 216 1.110442 TGTGAAGGTGTGGGCAAAAG 58.890 50.000 0.00 0.00 0.00 2.27
216 217 1.341482 TGTGAAGGTGTGGGCAAAAGA 60.341 47.619 0.00 0.00 0.00 2.52
217 218 1.754226 GTGAAGGTGTGGGCAAAAGAA 59.246 47.619 0.00 0.00 0.00 2.52
218 219 1.754226 TGAAGGTGTGGGCAAAAGAAC 59.246 47.619 0.00 0.00 0.00 3.01
219 220 2.031870 GAAGGTGTGGGCAAAAGAACT 58.968 47.619 0.00 0.00 0.00 3.01
220 221 2.159179 AGGTGTGGGCAAAAGAACTT 57.841 45.000 0.00 0.00 0.00 2.66
221 222 3.306472 AGGTGTGGGCAAAAGAACTTA 57.694 42.857 0.00 0.00 0.00 2.24
222 223 3.844640 AGGTGTGGGCAAAAGAACTTAT 58.155 40.909 0.00 0.00 0.00 1.73
223 224 3.826729 AGGTGTGGGCAAAAGAACTTATC 59.173 43.478 0.00 0.00 0.00 1.75
224 225 3.572255 GGTGTGGGCAAAAGAACTTATCA 59.428 43.478 0.00 0.00 0.00 2.15
225 226 4.546570 GTGTGGGCAAAAGAACTTATCAC 58.453 43.478 0.00 0.00 0.00 3.06
226 227 3.572255 TGTGGGCAAAAGAACTTATCACC 59.428 43.478 0.00 0.00 0.00 4.02
227 228 3.826729 GTGGGCAAAAGAACTTATCACCT 59.173 43.478 0.00 0.00 0.00 4.00
228 229 4.079253 TGGGCAAAAGAACTTATCACCTC 58.921 43.478 0.00 0.00 0.00 3.85
229 230 3.444034 GGGCAAAAGAACTTATCACCTCC 59.556 47.826 0.00 0.00 0.00 4.30
230 231 4.079253 GGCAAAAGAACTTATCACCTCCA 58.921 43.478 0.00 0.00 0.00 3.86
231 232 4.082733 GGCAAAAGAACTTATCACCTCCAC 60.083 45.833 0.00 0.00 0.00 4.02
232 233 4.518970 GCAAAAGAACTTATCACCTCCACA 59.481 41.667 0.00 0.00 0.00 4.17
233 234 5.009610 GCAAAAGAACTTATCACCTCCACAA 59.990 40.000 0.00 0.00 0.00 3.33
234 235 6.460953 GCAAAAGAACTTATCACCTCCACAAA 60.461 38.462 0.00 0.00 0.00 2.83
235 236 7.661040 CAAAAGAACTTATCACCTCCACAAAT 58.339 34.615 0.00 0.00 0.00 2.32
236 237 6.824305 AAGAACTTATCACCTCCACAAATG 57.176 37.500 0.00 0.00 0.00 2.32
237 238 5.880901 AGAACTTATCACCTCCACAAATGT 58.119 37.500 0.00 0.00 0.00 2.71
238 239 6.306987 AGAACTTATCACCTCCACAAATGTT 58.693 36.000 0.00 0.00 0.00 2.71
239 240 7.458397 AGAACTTATCACCTCCACAAATGTTA 58.542 34.615 0.00 0.00 0.00 2.41
240 241 8.109634 AGAACTTATCACCTCCACAAATGTTAT 58.890 33.333 0.00 0.00 0.00 1.89
241 242 7.865706 ACTTATCACCTCCACAAATGTTATC 57.134 36.000 0.00 0.00 0.00 1.75
242 243 7.633789 ACTTATCACCTCCACAAATGTTATCT 58.366 34.615 0.00 0.00 0.00 1.98
243 244 8.109634 ACTTATCACCTCCACAAATGTTATCTT 58.890 33.333 0.00 0.00 0.00 2.40
244 245 8.877864 TTATCACCTCCACAAATGTTATCTTT 57.122 30.769 0.00 0.00 0.00 2.52
245 246 7.781324 ATCACCTCCACAAATGTTATCTTTT 57.219 32.000 0.00 0.00 0.00 2.27
246 247 7.595819 TCACCTCCACAAATGTTATCTTTTT 57.404 32.000 0.00 0.00 0.00 1.94
265 266 3.306902 TTTTTGCAGGGGTCCACAA 57.693 47.368 0.00 0.00 0.00 3.33
266 267 1.573108 TTTTTGCAGGGGTCCACAAA 58.427 45.000 0.00 0.00 32.63 2.83
267 268 1.799933 TTTTGCAGGGGTCCACAAAT 58.200 45.000 0.00 0.00 33.87 2.32
268 269 1.047002 TTTGCAGGGGTCCACAAATG 58.953 50.000 0.00 0.00 30.60 2.32
269 270 0.105760 TTGCAGGGGTCCACAAATGT 60.106 50.000 0.00 0.00 0.00 2.71
270 271 0.774276 TGCAGGGGTCCACAAATGTA 59.226 50.000 0.00 0.00 0.00 2.29
271 272 1.145945 TGCAGGGGTCCACAAATGTAA 59.854 47.619 0.00 0.00 0.00 2.41
272 273 2.225242 TGCAGGGGTCCACAAATGTAAT 60.225 45.455 0.00 0.00 0.00 1.89
273 274 2.427095 GCAGGGGTCCACAAATGTAATC 59.573 50.000 0.00 0.00 0.00 1.75
274 275 3.696045 CAGGGGTCCACAAATGTAATCA 58.304 45.455 0.00 0.00 0.00 2.57
275 276 4.280819 CAGGGGTCCACAAATGTAATCAT 58.719 43.478 0.00 0.00 35.59 2.45
276 277 4.339247 CAGGGGTCCACAAATGTAATCATC 59.661 45.833 0.00 0.00 32.56 2.92
277 278 4.230502 AGGGGTCCACAAATGTAATCATCT 59.769 41.667 0.00 0.00 32.56 2.90
278 279 5.431731 AGGGGTCCACAAATGTAATCATCTA 59.568 40.000 0.00 0.00 32.56 1.98
279 280 5.531287 GGGGTCCACAAATGTAATCATCTAC 59.469 44.000 0.00 0.00 32.56 2.59
280 281 6.357367 GGGTCCACAAATGTAATCATCTACT 58.643 40.000 0.00 0.00 32.56 2.57
281 282 6.260936 GGGTCCACAAATGTAATCATCTACTG 59.739 42.308 0.00 0.00 32.56 2.74
282 283 6.823689 GGTCCACAAATGTAATCATCTACTGT 59.176 38.462 0.00 0.00 32.56 3.55
283 284 7.985184 GGTCCACAAATGTAATCATCTACTGTA 59.015 37.037 0.00 0.00 32.56 2.74
284 285 9.378551 GTCCACAAATGTAATCATCTACTGTAA 57.621 33.333 0.00 0.00 32.56 2.41
285 286 9.378551 TCCACAAATGTAATCATCTACTGTAAC 57.621 33.333 0.00 0.00 32.56 2.50
286 287 9.383519 CCACAAATGTAATCATCTACTGTAACT 57.616 33.333 0.00 0.00 32.56 2.24
295 296 8.824756 AATCATCTACTGTAACTTCTACTCCA 57.175 34.615 0.00 0.00 0.00 3.86
296 297 9.427821 AATCATCTACTGTAACTTCTACTCCAT 57.572 33.333 0.00 0.00 0.00 3.41
297 298 8.453238 TCATCTACTGTAACTTCTACTCCATC 57.547 38.462 0.00 0.00 0.00 3.51
298 299 8.053355 TCATCTACTGTAACTTCTACTCCATCA 58.947 37.037 0.00 0.00 0.00 3.07
299 300 7.867305 TCTACTGTAACTTCTACTCCATCAG 57.133 40.000 0.00 0.00 0.00 2.90
300 301 7.403671 TCTACTGTAACTTCTACTCCATCAGT 58.596 38.462 0.00 0.00 39.41 3.41
301 302 6.919775 ACTGTAACTTCTACTCCATCAGTT 57.080 37.500 0.00 0.00 36.43 3.16
302 303 6.926313 ACTGTAACTTCTACTCCATCAGTTC 58.074 40.000 0.00 0.00 36.43 3.01
303 304 6.071278 ACTGTAACTTCTACTCCATCAGTTCC 60.071 42.308 0.00 0.00 36.43 3.62
304 305 5.778241 TGTAACTTCTACTCCATCAGTTCCA 59.222 40.000 0.00 0.00 36.43 3.53
305 306 5.825593 AACTTCTACTCCATCAGTTCCAA 57.174 39.130 0.00 0.00 36.43 3.53
306 307 5.825593 ACTTCTACTCCATCAGTTCCAAA 57.174 39.130 0.00 0.00 36.43 3.28
307 308 6.380079 ACTTCTACTCCATCAGTTCCAAAT 57.620 37.500 0.00 0.00 36.43 2.32
308 309 6.784031 ACTTCTACTCCATCAGTTCCAAATT 58.216 36.000 0.00 0.00 36.43 1.82
309 310 7.918076 ACTTCTACTCCATCAGTTCCAAATTA 58.082 34.615 0.00 0.00 36.43 1.40
310 311 7.824779 ACTTCTACTCCATCAGTTCCAAATTAC 59.175 37.037 0.00 0.00 36.43 1.89
311 312 7.496346 TCTACTCCATCAGTTCCAAATTACT 57.504 36.000 0.00 0.00 36.43 2.24
312 313 7.331026 TCTACTCCATCAGTTCCAAATTACTG 58.669 38.462 0.41 0.41 42.41 2.74
313 314 5.256474 ACTCCATCAGTTCCAAATTACTGG 58.744 41.667 6.31 0.00 41.58 4.00
314 315 5.222130 ACTCCATCAGTTCCAAATTACTGGT 60.222 40.000 6.31 0.00 41.58 4.00
315 316 5.253330 TCCATCAGTTCCAAATTACTGGTC 58.747 41.667 6.31 0.00 41.58 4.02
316 317 4.094887 CCATCAGTTCCAAATTACTGGTCG 59.905 45.833 6.31 0.00 41.58 4.79
317 318 3.071479 TCAGTTCCAAATTACTGGTCGC 58.929 45.455 6.31 0.00 41.58 5.19
318 319 2.811431 CAGTTCCAAATTACTGGTCGCA 59.189 45.455 0.00 0.00 38.44 5.10
319 320 2.812011 AGTTCCAAATTACTGGTCGCAC 59.188 45.455 0.00 0.00 37.74 5.34
320 321 2.550606 GTTCCAAATTACTGGTCGCACA 59.449 45.455 0.00 0.00 37.74 4.57
321 322 2.852449 TCCAAATTACTGGTCGCACAA 58.148 42.857 0.00 0.00 37.74 3.33
322 323 3.215151 TCCAAATTACTGGTCGCACAAA 58.785 40.909 0.00 0.00 37.74 2.83
323 324 3.823873 TCCAAATTACTGGTCGCACAAAT 59.176 39.130 0.00 0.00 37.74 2.32
324 325 3.919804 CCAAATTACTGGTCGCACAAATG 59.080 43.478 0.00 0.00 0.00 2.32
325 326 3.848272 AATTACTGGTCGCACAAATGG 57.152 42.857 0.00 0.00 0.00 3.16
326 327 2.552599 TTACTGGTCGCACAAATGGA 57.447 45.000 0.00 0.00 0.00 3.41
327 328 2.779755 TACTGGTCGCACAAATGGAT 57.220 45.000 0.00 0.00 0.00 3.41
328 329 1.167851 ACTGGTCGCACAAATGGATG 58.832 50.000 0.00 0.00 0.00 3.51
329 330 1.167851 CTGGTCGCACAAATGGATGT 58.832 50.000 0.00 0.00 0.00 3.06
330 331 2.290008 ACTGGTCGCACAAATGGATGTA 60.290 45.455 0.00 0.00 30.84 2.29
331 332 2.945008 CTGGTCGCACAAATGGATGTAT 59.055 45.455 0.00 0.00 30.84 2.29
332 333 2.942376 TGGTCGCACAAATGGATGTATC 59.058 45.455 0.00 0.00 30.84 2.24
333 334 3.206150 GGTCGCACAAATGGATGTATCT 58.794 45.455 0.00 0.00 30.84 1.98
334 335 4.141824 TGGTCGCACAAATGGATGTATCTA 60.142 41.667 0.00 0.00 30.84 1.98
335 336 4.449068 GGTCGCACAAATGGATGTATCTAG 59.551 45.833 0.00 0.00 30.84 2.43
336 337 5.289595 GTCGCACAAATGGATGTATCTAGA 58.710 41.667 0.00 0.00 30.84 2.43
337 338 5.753438 GTCGCACAAATGGATGTATCTAGAA 59.247 40.000 0.00 0.00 30.84 2.10
338 339 5.753438 TCGCACAAATGGATGTATCTAGAAC 59.247 40.000 0.00 0.00 30.84 3.01
339 340 5.755375 CGCACAAATGGATGTATCTAGAACT 59.245 40.000 0.00 0.00 30.84 3.01
340 341 6.923508 CGCACAAATGGATGTATCTAGAACTA 59.076 38.462 0.00 0.00 30.84 2.24
341 342 7.438160 CGCACAAATGGATGTATCTAGAACTAA 59.562 37.037 0.00 0.00 30.84 2.24
342 343 9.109393 GCACAAATGGATGTATCTAGAACTAAA 57.891 33.333 0.00 0.00 30.84 1.85
368 369 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
369 370 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
370 371 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
371 372 5.510430 TCTAGATACATCCATACCTGCGAT 58.490 41.667 0.00 0.00 0.00 4.58
372 373 6.659824 TCTAGATACATCCATACCTGCGATA 58.340 40.000 0.00 0.00 0.00 2.92
373 374 7.116736 TCTAGATACATCCATACCTGCGATAA 58.883 38.462 0.00 0.00 0.00 1.75
374 375 6.214191 AGATACATCCATACCTGCGATAAG 57.786 41.667 0.00 0.00 0.00 1.73
375 376 5.717178 AGATACATCCATACCTGCGATAAGT 59.283 40.000 0.00 0.00 0.00 2.24
376 377 6.890268 AGATACATCCATACCTGCGATAAGTA 59.110 38.462 0.00 0.00 0.00 2.24
377 378 5.801531 ACATCCATACCTGCGATAAGTAA 57.198 39.130 0.00 0.00 0.00 2.24
378 379 6.360370 ACATCCATACCTGCGATAAGTAAT 57.640 37.500 0.00 0.00 0.00 1.89
379 380 6.769512 ACATCCATACCTGCGATAAGTAATT 58.230 36.000 0.00 0.00 0.00 1.40
380 381 6.874134 ACATCCATACCTGCGATAAGTAATTC 59.126 38.462 0.00 0.00 0.00 2.17
381 382 5.466819 TCCATACCTGCGATAAGTAATTCG 58.533 41.667 0.00 0.00 38.37 3.34
382 383 4.625742 CCATACCTGCGATAAGTAATTCGG 59.374 45.833 0.00 0.00 35.93 4.30
383 384 5.466819 CATACCTGCGATAAGTAATTCGGA 58.533 41.667 0.00 0.00 35.93 4.55
384 385 4.395959 ACCTGCGATAAGTAATTCGGAA 57.604 40.909 0.00 0.00 35.28 4.30
385 386 4.117685 ACCTGCGATAAGTAATTCGGAAC 58.882 43.478 0.00 0.00 35.28 3.62
400 401 1.553706 GGAACGGAGGGAGTAAGTGA 58.446 55.000 0.00 0.00 0.00 3.41
401 402 1.204231 GGAACGGAGGGAGTAAGTGAC 59.796 57.143 0.00 0.00 0.00 3.67
402 403 1.891150 GAACGGAGGGAGTAAGTGACA 59.109 52.381 0.00 0.00 0.00 3.58
403 404 2.005370 ACGGAGGGAGTAAGTGACAA 57.995 50.000 0.00 0.00 0.00 3.18
404 405 1.893801 ACGGAGGGAGTAAGTGACAAG 59.106 52.381 0.00 0.00 0.00 3.16
405 406 1.404315 CGGAGGGAGTAAGTGACAAGC 60.404 57.143 0.00 0.00 0.00 4.01
406 407 1.066071 GGAGGGAGTAAGTGACAAGCC 60.066 57.143 0.00 0.00 0.00 4.35
407 408 1.623811 GAGGGAGTAAGTGACAAGCCA 59.376 52.381 0.00 0.00 0.00 4.75
408 409 1.625818 AGGGAGTAAGTGACAAGCCAG 59.374 52.381 0.00 0.00 0.00 4.85
409 410 1.339151 GGGAGTAAGTGACAAGCCAGG 60.339 57.143 0.00 0.00 0.00 4.45
410 411 1.348036 GGAGTAAGTGACAAGCCAGGT 59.652 52.381 0.00 0.00 0.00 4.00
411 412 2.417719 GAGTAAGTGACAAGCCAGGTG 58.582 52.381 0.00 0.00 0.00 4.00
412 413 2.037251 GAGTAAGTGACAAGCCAGGTGA 59.963 50.000 0.00 0.00 0.00 4.02
413 414 2.438021 AGTAAGTGACAAGCCAGGTGAA 59.562 45.455 0.00 0.00 0.00 3.18
414 415 2.435372 AAGTGACAAGCCAGGTGAAA 57.565 45.000 0.00 0.00 0.00 2.69
415 416 2.435372 AGTGACAAGCCAGGTGAAAA 57.565 45.000 0.00 0.00 0.00 2.29
416 417 2.949447 AGTGACAAGCCAGGTGAAAAT 58.051 42.857 0.00 0.00 0.00 1.82
417 418 3.299503 AGTGACAAGCCAGGTGAAAATT 58.700 40.909 0.00 0.00 0.00 1.82
418 419 3.706086 AGTGACAAGCCAGGTGAAAATTT 59.294 39.130 0.00 0.00 0.00 1.82
419 420 4.162131 AGTGACAAGCCAGGTGAAAATTTT 59.838 37.500 2.28 2.28 0.00 1.82
420 421 4.270808 GTGACAAGCCAGGTGAAAATTTTG 59.729 41.667 8.47 0.00 0.00 2.44
421 422 4.161189 TGACAAGCCAGGTGAAAATTTTGA 59.839 37.500 8.47 0.00 0.00 2.69
422 423 4.441792 ACAAGCCAGGTGAAAATTTTGAC 58.558 39.130 8.47 10.22 0.00 3.18
423 424 3.751479 AGCCAGGTGAAAATTTTGACC 57.249 42.857 26.53 26.53 43.61 4.02
424 425 3.037549 AGCCAGGTGAAAATTTTGACCA 58.962 40.909 32.37 13.18 45.37 4.02
425 426 3.647590 AGCCAGGTGAAAATTTTGACCAT 59.352 39.130 32.37 19.11 45.37 3.55
426 427 3.747529 GCCAGGTGAAAATTTTGACCATG 59.252 43.478 32.37 26.04 45.37 3.66
427 428 4.317488 CCAGGTGAAAATTTTGACCATGG 58.683 43.478 32.37 29.25 45.37 3.66
428 429 4.202346 CCAGGTGAAAATTTTGACCATGGT 60.202 41.667 32.37 19.89 45.37 3.55
429 430 4.990426 CAGGTGAAAATTTTGACCATGGTC 59.010 41.667 32.37 33.97 45.37 4.02
430 431 4.901250 AGGTGAAAATTTTGACCATGGTCT 59.099 37.500 37.92 21.14 45.37 3.85
431 432 5.366477 AGGTGAAAATTTTGACCATGGTCTT 59.634 36.000 37.92 25.76 45.37 3.01
432 433 5.466393 GGTGAAAATTTTGACCATGGTCTTG 59.534 40.000 37.92 5.39 42.92 3.02
433 434 6.048509 GTGAAAATTTTGACCATGGTCTTGT 58.951 36.000 37.92 23.05 44.80 3.16
434 435 6.538381 GTGAAAATTTTGACCATGGTCTTGTT 59.462 34.615 37.92 25.47 44.80 2.83
435 436 7.065683 GTGAAAATTTTGACCATGGTCTTGTTT 59.934 33.333 37.92 28.63 44.80 2.83
436 437 7.609532 TGAAAATTTTGACCATGGTCTTGTTTT 59.390 29.630 37.92 32.80 44.80 2.43
437 438 7.936496 AAATTTTGACCATGGTCTTGTTTTT 57.064 28.000 37.92 27.04 44.80 1.94
466 467 6.771076 TCAATCAAAACGGTCTAATTCATCG 58.229 36.000 0.00 0.00 0.00 3.84
467 468 6.370442 TCAATCAAAACGGTCTAATTCATCGT 59.630 34.615 0.00 0.00 35.48 3.73
468 469 7.546316 TCAATCAAAACGGTCTAATTCATCGTA 59.454 33.333 0.00 0.00 33.52 3.43
469 470 6.880822 TCAAAACGGTCTAATTCATCGTAG 57.119 37.500 0.00 0.00 33.52 3.51
470 471 6.392354 TCAAAACGGTCTAATTCATCGTAGT 58.608 36.000 0.00 0.00 33.52 2.73
471 472 6.309494 TCAAAACGGTCTAATTCATCGTAGTG 59.691 38.462 0.00 0.00 33.52 2.74
472 473 5.571784 AACGGTCTAATTCATCGTAGTGA 57.428 39.130 0.00 0.00 33.52 3.41
473 474 5.171147 ACGGTCTAATTCATCGTAGTGAG 57.829 43.478 0.00 0.00 32.03 3.51
474 475 4.639310 ACGGTCTAATTCATCGTAGTGAGT 59.361 41.667 0.00 0.00 32.03 3.41
475 476 4.970611 CGGTCTAATTCATCGTAGTGAGTG 59.029 45.833 0.00 0.00 0.00 3.51
476 477 5.448768 CGGTCTAATTCATCGTAGTGAGTGT 60.449 44.000 0.00 0.00 0.00 3.55
477 478 5.744345 GGTCTAATTCATCGTAGTGAGTGTG 59.256 44.000 0.00 0.00 0.00 3.82
478 479 5.744345 GTCTAATTCATCGTAGTGAGTGTGG 59.256 44.000 0.00 0.00 0.00 4.17
479 480 2.363788 TTCATCGTAGTGAGTGTGGC 57.636 50.000 0.00 0.00 0.00 5.01
480 481 1.545841 TCATCGTAGTGAGTGTGGCT 58.454 50.000 0.00 0.00 0.00 4.75
481 482 1.472878 TCATCGTAGTGAGTGTGGCTC 59.527 52.381 0.00 0.00 44.36 4.70
482 483 0.818296 ATCGTAGTGAGTGTGGCTCC 59.182 55.000 0.00 0.00 43.48 4.70
483 484 0.538746 TCGTAGTGAGTGTGGCTCCA 60.539 55.000 0.00 0.00 43.48 3.86
484 485 0.317160 CGTAGTGAGTGTGGCTCCAA 59.683 55.000 0.00 0.00 43.48 3.53
485 486 1.066858 CGTAGTGAGTGTGGCTCCAAT 60.067 52.381 0.00 0.00 43.48 3.16
486 487 2.165641 CGTAGTGAGTGTGGCTCCAATA 59.834 50.000 0.00 0.00 43.48 1.90
487 488 3.368013 CGTAGTGAGTGTGGCTCCAATAA 60.368 47.826 0.00 0.00 43.48 1.40
488 489 3.788227 AGTGAGTGTGGCTCCAATAAA 57.212 42.857 0.00 0.00 43.48 1.40
489 490 4.307032 AGTGAGTGTGGCTCCAATAAAT 57.693 40.909 0.00 0.00 43.48 1.40
490 491 4.012374 AGTGAGTGTGGCTCCAATAAATG 58.988 43.478 0.00 0.00 43.48 2.32
491 492 3.758554 GTGAGTGTGGCTCCAATAAATGT 59.241 43.478 0.00 0.00 43.48 2.71
492 493 4.218417 GTGAGTGTGGCTCCAATAAATGTT 59.782 41.667 0.00 0.00 43.48 2.71
493 494 4.458989 TGAGTGTGGCTCCAATAAATGTTC 59.541 41.667 0.00 0.00 43.48 3.18
494 495 4.666512 AGTGTGGCTCCAATAAATGTTCT 58.333 39.130 0.00 0.00 0.00 3.01
495 496 5.079643 AGTGTGGCTCCAATAAATGTTCTT 58.920 37.500 0.00 0.00 0.00 2.52
496 497 5.539955 AGTGTGGCTCCAATAAATGTTCTTT 59.460 36.000 0.00 0.00 0.00 2.52
497 498 6.041979 AGTGTGGCTCCAATAAATGTTCTTTT 59.958 34.615 0.00 0.00 0.00 2.27
498 499 6.366061 GTGTGGCTCCAATAAATGTTCTTTTC 59.634 38.462 0.00 0.00 0.00 2.29
499 500 6.267471 TGTGGCTCCAATAAATGTTCTTTTCT 59.733 34.615 0.00 0.00 0.00 2.52
500 501 7.154656 GTGGCTCCAATAAATGTTCTTTTCTT 58.845 34.615 0.00 0.00 0.00 2.52
501 502 7.657354 GTGGCTCCAATAAATGTTCTTTTCTTT 59.343 33.333 0.00 0.00 0.00 2.52
502 503 8.865090 TGGCTCCAATAAATGTTCTTTTCTTTA 58.135 29.630 0.00 0.00 0.00 1.85
503 504 9.358872 GGCTCCAATAAATGTTCTTTTCTTTAG 57.641 33.333 0.00 0.00 0.00 1.85
504 505 9.358872 GCTCCAATAAATGTTCTTTTCTTTAGG 57.641 33.333 0.00 0.00 0.00 2.69
505 506 9.358872 CTCCAATAAATGTTCTTTTCTTTAGGC 57.641 33.333 0.00 0.00 0.00 3.93
506 507 9.088987 TCCAATAAATGTTCTTTTCTTTAGGCT 57.911 29.630 0.00 0.00 0.00 4.58
512 513 8.926092 AATGTTCTTTTCTTTAGGCTAGAACT 57.074 30.769 19.31 7.49 41.09 3.01
514 515 9.660180 ATGTTCTTTTCTTTAGGCTAGAACTAG 57.340 33.333 19.31 11.41 41.09 2.57
515 516 8.867097 TGTTCTTTTCTTTAGGCTAGAACTAGA 58.133 33.333 19.31 12.97 41.09 2.43
516 517 9.708092 GTTCTTTTCTTTAGGCTAGAACTAGAA 57.292 33.333 14.01 14.07 38.77 2.10
517 518 9.708092 TTCTTTTCTTTAGGCTAGAACTAGAAC 57.292 33.333 12.33 4.87 32.85 3.01
518 519 8.027771 TCTTTTCTTTAGGCTAGAACTAGAACG 58.972 37.037 12.33 0.00 35.21 3.95
519 520 7.458409 TTTCTTTAGGCTAGAACTAGAACGA 57.542 36.000 12.33 0.12 35.21 3.85
520 521 6.434018 TCTTTAGGCTAGAACTAGAACGAC 57.566 41.667 12.33 0.00 35.21 4.34
521 522 6.179040 TCTTTAGGCTAGAACTAGAACGACT 58.821 40.000 12.33 4.97 35.21 4.18
522 523 5.814764 TTAGGCTAGAACTAGAACGACTG 57.185 43.478 12.33 0.00 35.21 3.51
523 524 2.424246 AGGCTAGAACTAGAACGACTGC 59.576 50.000 12.33 0.00 35.21 4.40
524 525 2.163815 GGCTAGAACTAGAACGACTGCA 59.836 50.000 12.33 0.00 35.21 4.41
525 526 3.172824 GCTAGAACTAGAACGACTGCAC 58.827 50.000 12.33 0.00 35.21 4.57
526 527 2.333389 AGAACTAGAACGACTGCACG 57.667 50.000 0.00 0.00 39.31 5.34
527 528 6.660559 GCTAGAACTAGAACGACTGCACGT 62.661 50.000 12.33 0.00 39.56 4.49
533 534 4.195308 ACGACTGCACGTTGTGTT 57.805 50.000 7.99 0.00 44.14 3.32
534 535 1.713246 ACGACTGCACGTTGTGTTG 59.287 52.632 7.99 0.00 44.14 3.33
535 536 1.651132 CGACTGCACGTTGTGTTGC 60.651 57.895 0.00 0.00 35.75 4.17
536 537 1.298339 GACTGCACGTTGTGTTGCC 60.298 57.895 0.00 0.00 35.75 4.52
537 538 1.714899 GACTGCACGTTGTGTTGCCT 61.715 55.000 0.00 0.00 35.75 4.75
538 539 1.312371 ACTGCACGTTGTGTTGCCTT 61.312 50.000 0.00 0.00 35.75 4.35
539 540 0.866906 CTGCACGTTGTGTTGCCTTG 60.867 55.000 0.00 0.00 35.75 3.61
540 541 2.230264 GCACGTTGTGTTGCCTTGC 61.230 57.895 0.00 0.00 35.75 4.01
541 542 1.433064 CACGTTGTGTTGCCTTGCT 59.567 52.632 0.00 0.00 0.00 3.91
542 543 0.866906 CACGTTGTGTTGCCTTGCTG 60.867 55.000 0.00 0.00 0.00 4.41
543 544 1.945662 CGTTGTGTTGCCTTGCTGC 60.946 57.895 0.00 0.00 0.00 5.25
544 545 1.141449 GTTGTGTTGCCTTGCTGCA 59.859 52.632 0.00 0.00 40.07 4.41
549 550 3.767816 TTGCCTTGCTGCAAGAGG 58.232 55.556 36.69 26.00 45.77 3.69
550 551 1.904865 TTGCCTTGCTGCAAGAGGG 60.905 57.895 36.69 24.93 45.77 4.30
551 552 3.756727 GCCTTGCTGCAAGAGGGC 61.757 66.667 36.69 29.54 43.42 5.19
552 553 3.066814 CCTTGCTGCAAGAGGGCC 61.067 66.667 36.69 0.00 43.42 5.80
553 554 3.437795 CTTGCTGCAAGAGGGCCG 61.438 66.667 32.99 8.74 43.42 6.13
554 555 3.907260 CTTGCTGCAAGAGGGCCGA 62.907 63.158 32.99 0.35 43.42 5.54
555 556 4.704833 TGCTGCAAGAGGGCCGAC 62.705 66.667 0.00 0.00 34.07 4.79
556 557 4.400961 GCTGCAAGAGGGCCGACT 62.401 66.667 0.00 0.00 34.07 4.18
557 558 2.125350 CTGCAAGAGGGCCGACTC 60.125 66.667 0.00 0.00 34.07 3.36
558 559 3.997064 CTGCAAGAGGGCCGACTCG 62.997 68.421 0.00 0.00 42.31 4.18
559 560 4.070552 GCAAGAGGGCCGACTCGT 62.071 66.667 0.00 0.00 42.31 4.18
560 561 2.657237 CAAGAGGGCCGACTCGTT 59.343 61.111 0.00 0.00 42.31 3.85
561 562 1.004918 CAAGAGGGCCGACTCGTTT 60.005 57.895 0.00 0.00 42.31 3.60
562 563 1.004918 AAGAGGGCCGACTCGTTTG 60.005 57.895 0.00 0.00 42.31 2.93
563 564 3.119096 GAGGGCCGACTCGTTTGC 61.119 66.667 0.00 0.00 0.00 3.68
564 565 3.591254 GAGGGCCGACTCGTTTGCT 62.591 63.158 0.00 0.00 0.00 3.91
565 566 2.221906 GAGGGCCGACTCGTTTGCTA 62.222 60.000 0.00 0.00 0.00 3.49
566 567 1.153429 GGGCCGACTCGTTTGCTAT 60.153 57.895 0.00 0.00 0.00 2.97
567 568 0.743345 GGGCCGACTCGTTTGCTATT 60.743 55.000 0.00 0.00 0.00 1.73
568 569 0.651031 GGCCGACTCGTTTGCTATTC 59.349 55.000 0.00 0.00 0.00 1.75
569 570 0.297820 GCCGACTCGTTTGCTATTCG 59.702 55.000 0.00 0.00 0.00 3.34
570 571 1.904144 CCGACTCGTTTGCTATTCGA 58.096 50.000 0.00 0.00 0.00 3.71
578 579 5.916969 CTCGTTTGCTATTCGAGTTTTTCT 58.083 37.500 12.29 0.00 43.69 2.52
579 580 6.295039 TCGTTTGCTATTCGAGTTTTTCTT 57.705 33.333 0.00 0.00 0.00 2.52
580 581 6.360329 TCGTTTGCTATTCGAGTTTTTCTTC 58.640 36.000 0.00 0.00 0.00 2.87
581 582 6.202188 TCGTTTGCTATTCGAGTTTTTCTTCT 59.798 34.615 0.00 0.00 0.00 2.85
582 583 6.851330 CGTTTGCTATTCGAGTTTTTCTTCTT 59.149 34.615 0.00 0.00 0.00 2.52
583 584 7.058467 CGTTTGCTATTCGAGTTTTTCTTCTTC 59.942 37.037 0.00 0.00 0.00 2.87
584 585 7.730364 TTGCTATTCGAGTTTTTCTTCTTCT 57.270 32.000 0.00 0.00 0.00 2.85
585 586 7.730364 TGCTATTCGAGTTTTTCTTCTTCTT 57.270 32.000 0.00 0.00 0.00 2.52
586 587 8.154649 TGCTATTCGAGTTTTTCTTCTTCTTT 57.845 30.769 0.00 0.00 0.00 2.52
587 588 8.621286 TGCTATTCGAGTTTTTCTTCTTCTTTT 58.379 29.630 0.00 0.00 0.00 2.27
588 589 9.452065 GCTATTCGAGTTTTTCTTCTTCTTTTT 57.548 29.630 0.00 0.00 0.00 1.94
609 610 7.531280 TTTTTGAGAGAGAATGCTATTCGAG 57.469 36.000 0.00 0.00 0.00 4.04
654 655 1.369321 CTATTCGAGCTGGGAGCCC 59.631 63.158 0.00 0.00 43.77 5.19
655 656 1.382557 TATTCGAGCTGGGAGCCCA 60.383 57.895 8.20 8.20 43.77 5.36
656 657 0.980754 TATTCGAGCTGGGAGCCCAA 60.981 55.000 9.94 0.00 46.63 4.12
657 658 1.852157 ATTCGAGCTGGGAGCCCAAA 61.852 55.000 9.94 0.83 46.63 3.28
658 659 2.034066 CGAGCTGGGAGCCCAAAA 59.966 61.111 9.94 0.00 46.63 2.44
659 660 1.603455 CGAGCTGGGAGCCCAAAAA 60.603 57.895 9.94 0.00 46.63 1.94
660 661 0.967380 CGAGCTGGGAGCCCAAAAAT 60.967 55.000 9.94 0.00 46.63 1.82
661 662 1.681780 CGAGCTGGGAGCCCAAAAATA 60.682 52.381 9.94 0.00 46.63 1.40
662 663 2.670939 GAGCTGGGAGCCCAAAAATAT 58.329 47.619 9.94 0.00 46.63 1.28
763 773 1.815003 CACCACCATTTCCTGCTTCTC 59.185 52.381 0.00 0.00 0.00 2.87
839 850 4.083862 GTGTGCCCCTCCTCGTCC 62.084 72.222 0.00 0.00 0.00 4.79
951 973 1.103398 TGATCTCCGCGCTCTGATCA 61.103 55.000 22.75 22.75 41.74 2.92
1259 1314 5.047377 AGAGAGAGACATCTGTTCTTGTTCC 60.047 44.000 0.00 0.00 35.30 3.62
1297 1358 2.885266 GCCTGTACTATCGATGGACTGA 59.115 50.000 16.43 0.00 0.00 3.41
1330 1392 1.627329 TGCAGCTCATCTGTTCCTTCT 59.373 47.619 0.00 0.00 44.66 2.85
1372 1434 1.617322 CATCCCCATCCATGAAGCTG 58.383 55.000 0.00 0.00 0.00 4.24
1428 1497 3.309296 GTTATCTCCCTCCCTGACATCA 58.691 50.000 0.00 0.00 0.00 3.07
1430 1499 2.575921 TCTCCCTCCCTGACATCATT 57.424 50.000 0.00 0.00 0.00 2.57
1432 1501 2.774234 TCTCCCTCCCTGACATCATTTC 59.226 50.000 0.00 0.00 0.00 2.17
1482 1551 5.531287 GTGTAACATCTTTCTTGGTCCAACT 59.469 40.000 0.00 0.00 36.32 3.16
1503 1572 3.064207 TGAACGTCAGTGACTATTTGGC 58.936 45.455 20.64 4.94 0.00 4.52
1505 1574 3.334583 ACGTCAGTGACTATTTGGCAT 57.665 42.857 20.64 0.00 35.31 4.40
1506 1575 3.674997 ACGTCAGTGACTATTTGGCATT 58.325 40.909 20.64 0.00 35.31 3.56
1507 1576 4.072131 ACGTCAGTGACTATTTGGCATTT 58.928 39.130 20.64 0.00 35.31 2.32
1508 1577 4.083324 ACGTCAGTGACTATTTGGCATTTG 60.083 41.667 20.64 3.38 35.31 2.32
1509 1578 4.083324 CGTCAGTGACTATTTGGCATTTGT 60.083 41.667 20.64 0.00 35.31 2.83
1510 1579 5.156355 GTCAGTGACTATTTGGCATTTGTG 58.844 41.667 16.26 0.00 35.31 3.33
1511 1580 5.048782 GTCAGTGACTATTTGGCATTTGTGA 60.049 40.000 16.26 0.00 35.31 3.58
1512 1581 5.711506 TCAGTGACTATTTGGCATTTGTGAT 59.288 36.000 0.00 0.00 35.31 3.06
1513 1582 6.032094 CAGTGACTATTTGGCATTTGTGATC 58.968 40.000 0.00 0.00 35.31 2.92
1514 1583 5.948162 AGTGACTATTTGGCATTTGTGATCT 59.052 36.000 0.00 0.00 35.31 2.75
1515 1584 6.094603 AGTGACTATTTGGCATTTGTGATCTC 59.905 38.462 0.00 0.00 35.31 2.75
1516 1585 6.094603 GTGACTATTTGGCATTTGTGATCTCT 59.905 38.462 0.00 0.00 35.31 3.10
1517 1586 6.317140 TGACTATTTGGCATTTGTGATCTCTC 59.683 38.462 0.00 0.00 0.00 3.20
1518 1587 6.421485 ACTATTTGGCATTTGTGATCTCTCT 58.579 36.000 0.00 0.00 0.00 3.10
1519 1588 5.831702 ATTTGGCATTTGTGATCTCTCTC 57.168 39.130 0.00 0.00 0.00 3.20
1520 1589 4.564782 TTGGCATTTGTGATCTCTCTCT 57.435 40.909 0.00 0.00 0.00 3.10
1521 1590 4.134379 TGGCATTTGTGATCTCTCTCTC 57.866 45.455 0.00 0.00 0.00 3.20
1522 1591 3.773667 TGGCATTTGTGATCTCTCTCTCT 59.226 43.478 0.00 0.00 0.00 3.10
1523 1592 4.141981 TGGCATTTGTGATCTCTCTCTCTC 60.142 45.833 0.00 0.00 0.00 3.20
1524 1593 4.099881 GGCATTTGTGATCTCTCTCTCTCT 59.900 45.833 0.00 0.00 0.00 3.10
1525 1594 5.284079 GCATTTGTGATCTCTCTCTCTCTC 58.716 45.833 0.00 0.00 0.00 3.20
1526 1595 5.068198 GCATTTGTGATCTCTCTCTCTCTCT 59.932 44.000 0.00 0.00 0.00 3.10
1527 1596 6.732154 CATTTGTGATCTCTCTCTCTCTCTC 58.268 44.000 0.00 0.00 0.00 3.20
1530 1882 4.101585 TGTGATCTCTCTCTCTCTCTCTCC 59.898 50.000 0.00 0.00 0.00 3.71
1569 1923 7.390027 TCTCTCTCCTTGAAAACTAAATGGAG 58.610 38.462 0.00 0.00 40.47 3.86
1580 1934 5.779241 AACTAAATGGAGATGGAGGTTGA 57.221 39.130 0.00 0.00 0.00 3.18
1611 1965 3.777465 TGAGGTTGTAGCGTACTGATC 57.223 47.619 0.00 0.00 0.00 2.92
1640 1994 5.633182 CGTGCAGCACCTTAATACAAATTTT 59.367 36.000 20.16 0.00 0.00 1.82
1751 2146 1.003355 AACATGGGCGAGTGGACAG 60.003 57.895 0.00 0.00 0.00 3.51
1812 2209 5.513788 CCACCTAATTCTAGTGGCAGCATAT 60.514 44.000 8.13 0.00 0.00 1.78
1814 2211 5.307976 ACCTAATTCTAGTGGCAGCATATGA 59.692 40.000 6.97 0.00 0.00 2.15
1828 2225 5.163723 GCAGCATATGACTAAGCAAAGACAA 60.164 40.000 6.97 0.00 0.00 3.18
1868 2265 2.349532 GCTGAGCACTTAAACCAACGAC 60.350 50.000 0.00 0.00 0.00 4.34
1870 2267 2.610374 TGAGCACTTAAACCAACGACAC 59.390 45.455 0.00 0.00 0.00 3.67
1966 2363 2.761767 TCACCATGCCAAAGAATCCATG 59.238 45.455 0.00 0.00 35.90 3.66
1996 2393 5.330295 CAATGCTTTCACTCACTATGCTTC 58.670 41.667 0.00 0.00 0.00 3.86
2061 2464 3.379372 AGTCTTTTGATCATTGCGGATGG 59.621 43.478 0.00 0.00 36.37 3.51
2107 2510 6.995686 TGACAGAAGAGTAATAACCTTGCAAA 59.004 34.615 0.00 0.00 0.00 3.68
2108 2511 7.173218 TGACAGAAGAGTAATAACCTTGCAAAG 59.827 37.037 0.00 0.00 45.69 2.77
2109 2512 6.998673 ACAGAAGAGTAATAACCTTGCAAAGT 59.001 34.615 0.00 0.00 44.25 2.66
2110 2513 7.173390 ACAGAAGAGTAATAACCTTGCAAAGTC 59.827 37.037 0.14 0.00 44.25 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.659111 TGGTCTCTCGTAGTTTCACAAA 57.341 40.909 0.00 0.00 0.00 2.83
1 2 4.659111 TTGGTCTCTCGTAGTTTCACAA 57.341 40.909 0.00 0.00 0.00 3.33
2 3 4.365723 GTTTGGTCTCTCGTAGTTTCACA 58.634 43.478 0.00 0.00 0.00 3.58
3 4 3.424529 CGTTTGGTCTCTCGTAGTTTCAC 59.575 47.826 0.00 0.00 0.00 3.18
4 5 3.067180 ACGTTTGGTCTCTCGTAGTTTCA 59.933 43.478 0.00 0.00 34.78 2.69
5 6 3.636381 ACGTTTGGTCTCTCGTAGTTTC 58.364 45.455 0.00 0.00 34.78 2.78
6 7 3.722728 ACGTTTGGTCTCTCGTAGTTT 57.277 42.857 0.00 0.00 34.78 2.66
7 8 4.276926 ACTTACGTTTGGTCTCTCGTAGTT 59.723 41.667 0.00 0.00 39.33 2.24
8 9 3.817647 ACTTACGTTTGGTCTCTCGTAGT 59.182 43.478 0.00 0.00 39.33 2.73
9 10 4.416505 ACTTACGTTTGGTCTCTCGTAG 57.583 45.455 0.00 0.00 39.33 3.51
10 11 4.836125 AACTTACGTTTGGTCTCTCGTA 57.164 40.909 0.00 0.00 37.66 3.43
11 12 3.722728 AACTTACGTTTGGTCTCTCGT 57.277 42.857 0.00 0.00 39.74 4.18
12 13 5.039480 TCTAACTTACGTTTGGTCTCTCG 57.961 43.478 0.00 0.00 34.59 4.04
13 14 8.976986 TTAATCTAACTTACGTTTGGTCTCTC 57.023 34.615 0.00 0.00 34.59 3.20
14 15 9.583765 GATTAATCTAACTTACGTTTGGTCTCT 57.416 33.333 8.27 0.00 34.59 3.10
15 16 9.583765 AGATTAATCTAACTTACGTTTGGTCTC 57.416 33.333 16.50 0.00 34.85 3.36
16 17 9.939802 AAGATTAATCTAACTTACGTTTGGTCT 57.060 29.630 18.23 0.00 35.76 3.85
17 18 9.968743 CAAGATTAATCTAACTTACGTTTGGTC 57.031 33.333 18.23 0.00 35.76 4.02
18 19 9.715121 TCAAGATTAATCTAACTTACGTTTGGT 57.285 29.630 18.23 0.00 35.76 3.67
22 23 9.939802 ACCTTCAAGATTAATCTAACTTACGTT 57.060 29.630 18.23 0.00 35.76 3.99
23 24 9.939802 AACCTTCAAGATTAATCTAACTTACGT 57.060 29.630 18.23 6.56 35.76 3.57
37 38 9.733556 ACAACCTTTTTAAAAACCTTCAAGATT 57.266 25.926 9.31 0.00 0.00 2.40
38 39 9.161629 CACAACCTTTTTAAAAACCTTCAAGAT 57.838 29.630 9.31 0.00 0.00 2.40
39 40 8.151596 ACACAACCTTTTTAAAAACCTTCAAGA 58.848 29.630 9.31 0.00 0.00 3.02
40 41 8.227119 CACACAACCTTTTTAAAAACCTTCAAG 58.773 33.333 9.31 0.00 0.00 3.02
41 42 7.931948 TCACACAACCTTTTTAAAAACCTTCAA 59.068 29.630 9.31 0.00 0.00 2.69
42 43 7.442656 TCACACAACCTTTTTAAAAACCTTCA 58.557 30.769 9.31 0.00 0.00 3.02
43 44 7.815549 TCTCACACAACCTTTTTAAAAACCTTC 59.184 33.333 9.31 0.00 0.00 3.46
44 45 7.672240 TCTCACACAACCTTTTTAAAAACCTT 58.328 30.769 9.31 1.49 0.00 3.50
45 46 7.234661 TCTCACACAACCTTTTTAAAAACCT 57.765 32.000 9.31 0.00 0.00 3.50
46 47 7.465379 GCATCTCACACAACCTTTTTAAAAACC 60.465 37.037 9.31 0.00 0.00 3.27
47 48 7.398746 GCATCTCACACAACCTTTTTAAAAAC 58.601 34.615 9.31 0.00 0.00 2.43
48 49 6.536941 GGCATCTCACACAACCTTTTTAAAAA 59.463 34.615 12.62 12.62 0.00 1.94
49 50 6.045955 GGCATCTCACACAACCTTTTTAAAA 58.954 36.000 0.00 0.00 0.00 1.52
50 51 5.452636 GGGCATCTCACACAACCTTTTTAAA 60.453 40.000 0.00 0.00 0.00 1.52
51 52 4.038642 GGGCATCTCACACAACCTTTTTAA 59.961 41.667 0.00 0.00 0.00 1.52
52 53 3.572255 GGGCATCTCACACAACCTTTTTA 59.428 43.478 0.00 0.00 0.00 1.52
53 54 2.365293 GGGCATCTCACACAACCTTTTT 59.635 45.455 0.00 0.00 0.00 1.94
54 55 1.963515 GGGCATCTCACACAACCTTTT 59.036 47.619 0.00 0.00 0.00 2.27
55 56 1.133513 TGGGCATCTCACACAACCTTT 60.134 47.619 0.00 0.00 0.00 3.11
56 57 0.478072 TGGGCATCTCACACAACCTT 59.522 50.000 0.00 0.00 0.00 3.50
57 58 0.700564 ATGGGCATCTCACACAACCT 59.299 50.000 0.00 0.00 0.00 3.50
58 59 1.098050 GATGGGCATCTCACACAACC 58.902 55.000 0.00 0.00 35.04 3.77
59 60 2.119801 AGATGGGCATCTCACACAAC 57.880 50.000 0.00 0.00 44.37 3.32
68 69 2.425143 TCACCTTTGAGATGGGCATC 57.575 50.000 0.00 0.00 38.09 3.91
69 70 4.079558 AGTTATCACCTTTGAGATGGGCAT 60.080 41.667 0.00 0.00 34.35 4.40
70 71 3.266772 AGTTATCACCTTTGAGATGGGCA 59.733 43.478 0.00 0.00 34.35 5.36
71 72 3.891049 AGTTATCACCTTTGAGATGGGC 58.109 45.455 0.00 0.00 34.35 5.36
72 73 9.799106 ATATTAAGTTATCACCTTTGAGATGGG 57.201 33.333 0.00 0.00 34.35 4.00
94 95 8.127954 CGAGATCACATGAGTATCGATGATATT 58.872 37.037 8.54 0.00 38.61 1.28
95 96 7.497249 TCGAGATCACATGAGTATCGATGATAT 59.503 37.037 8.54 0.00 38.61 1.63
96 97 6.818644 TCGAGATCACATGAGTATCGATGATA 59.181 38.462 8.54 0.00 38.61 2.15
97 98 5.645497 TCGAGATCACATGAGTATCGATGAT 59.355 40.000 8.54 0.31 38.61 2.45
98 99 4.997395 TCGAGATCACATGAGTATCGATGA 59.003 41.667 8.54 0.00 38.61 2.92
99 100 5.288543 TCGAGATCACATGAGTATCGATG 57.711 43.478 8.54 0.00 38.61 3.84
100 101 4.142708 GCTCGAGATCACATGAGTATCGAT 60.143 45.833 18.75 2.16 38.61 3.59
101 102 3.187432 GCTCGAGATCACATGAGTATCGA 59.813 47.826 18.75 7.88 38.61 3.59
102 103 3.188254 AGCTCGAGATCACATGAGTATCG 59.812 47.826 18.75 3.64 38.61 2.92
103 104 4.379394 GGAGCTCGAGATCACATGAGTATC 60.379 50.000 29.93 6.75 30.87 2.24
104 105 3.505680 GGAGCTCGAGATCACATGAGTAT 59.494 47.826 29.93 0.00 30.87 2.12
105 106 2.881513 GGAGCTCGAGATCACATGAGTA 59.118 50.000 29.93 0.00 30.87 2.59
106 107 1.680735 GGAGCTCGAGATCACATGAGT 59.319 52.381 29.93 0.00 30.87 3.41
107 108 1.680207 TGGAGCTCGAGATCACATGAG 59.320 52.381 29.93 0.00 30.87 2.90
108 109 1.767759 TGGAGCTCGAGATCACATGA 58.232 50.000 29.93 7.19 30.87 3.07
109 110 2.591571 TTGGAGCTCGAGATCACATG 57.408 50.000 29.93 0.00 30.87 3.21
110 111 2.697229 TCATTGGAGCTCGAGATCACAT 59.303 45.455 29.93 18.46 30.87 3.21
111 112 2.102578 TCATTGGAGCTCGAGATCACA 58.897 47.619 29.93 21.91 30.87 3.58
112 113 2.879002 TCATTGGAGCTCGAGATCAC 57.121 50.000 29.93 19.77 30.87 3.06
113 114 2.298446 GGATCATTGGAGCTCGAGATCA 59.702 50.000 29.93 12.89 34.94 2.92
114 115 2.562298 AGGATCATTGGAGCTCGAGATC 59.438 50.000 22.26 22.26 33.06 2.75
115 116 2.607499 AGGATCATTGGAGCTCGAGAT 58.393 47.619 18.75 10.84 0.00 2.75
116 117 2.079170 AGGATCATTGGAGCTCGAGA 57.921 50.000 18.75 3.09 0.00 4.04
117 118 3.153130 TCTAGGATCATTGGAGCTCGAG 58.847 50.000 8.45 8.45 0.00 4.04
118 119 3.229697 TCTAGGATCATTGGAGCTCGA 57.770 47.619 7.83 0.00 0.00 4.04
119 120 3.509184 TCATCTAGGATCATTGGAGCTCG 59.491 47.826 7.83 0.00 0.00 5.03
120 121 5.221601 TGTTCATCTAGGATCATTGGAGCTC 60.222 44.000 4.71 4.71 0.00 4.09
121 122 4.657504 TGTTCATCTAGGATCATTGGAGCT 59.342 41.667 0.00 0.00 0.00 4.09
122 123 4.965814 TGTTCATCTAGGATCATTGGAGC 58.034 43.478 0.00 0.00 0.00 4.70
123 124 6.172136 ACTGTTCATCTAGGATCATTGGAG 57.828 41.667 0.00 0.00 0.00 3.86
124 125 7.125659 TGTTACTGTTCATCTAGGATCATTGGA 59.874 37.037 0.00 0.00 0.00 3.53
125 126 7.275183 TGTTACTGTTCATCTAGGATCATTGG 58.725 38.462 0.00 0.00 0.00 3.16
126 127 8.899427 ATGTTACTGTTCATCTAGGATCATTG 57.101 34.615 0.00 0.00 0.00 2.82
129 130 9.817809 GTTTATGTTACTGTTCATCTAGGATCA 57.182 33.333 0.00 0.00 0.00 2.92
130 131 9.817809 TGTTTATGTTACTGTTCATCTAGGATC 57.182 33.333 0.00 0.00 0.00 3.36
139 140 9.283768 AGACATCAATGTTTATGTTACTGTTCA 57.716 29.630 0.00 0.00 41.95 3.18
141 142 9.897744 CAAGACATCAATGTTTATGTTACTGTT 57.102 29.630 0.00 0.00 41.95 3.16
142 143 9.066892 ACAAGACATCAATGTTTATGTTACTGT 57.933 29.630 0.00 0.00 41.95 3.55
143 144 9.546909 GACAAGACATCAATGTTTATGTTACTG 57.453 33.333 0.00 0.00 41.95 2.74
144 145 9.507329 AGACAAGACATCAATGTTTATGTTACT 57.493 29.630 0.00 0.00 41.95 2.24
147 148 8.443160 CGTAGACAAGACATCAATGTTTATGTT 58.557 33.333 0.00 0.00 41.95 2.71
148 149 7.602644 ACGTAGACAAGACATCAATGTTTATGT 59.397 33.333 0.00 3.64 41.95 2.29
149 150 7.899841 CACGTAGACAAGACATCAATGTTTATG 59.100 37.037 0.00 0.71 41.95 1.90
150 151 7.413000 GCACGTAGACAAGACATCAATGTTTAT 60.413 37.037 0.00 0.00 41.95 1.40
151 152 6.128661 GCACGTAGACAAGACATCAATGTTTA 60.129 38.462 0.00 0.00 41.95 2.01
152 153 5.334105 GCACGTAGACAAGACATCAATGTTT 60.334 40.000 0.00 0.00 41.95 2.83
153 154 4.152402 GCACGTAGACAAGACATCAATGTT 59.848 41.667 0.00 0.00 41.95 2.71
154 155 3.679980 GCACGTAGACAAGACATCAATGT 59.320 43.478 0.00 0.00 45.16 2.71
155 156 3.679502 TGCACGTAGACAAGACATCAATG 59.320 43.478 0.00 0.00 0.00 2.82
156 157 3.925379 TGCACGTAGACAAGACATCAAT 58.075 40.909 0.00 0.00 0.00 2.57
157 158 3.378911 TGCACGTAGACAAGACATCAA 57.621 42.857 0.00 0.00 0.00 2.57
158 159 3.253230 CATGCACGTAGACAAGACATCA 58.747 45.455 0.00 0.00 0.00 3.07
159 160 2.029728 GCATGCACGTAGACAAGACATC 59.970 50.000 14.21 0.00 0.00 3.06
160 161 2.002586 GCATGCACGTAGACAAGACAT 58.997 47.619 14.21 0.00 0.00 3.06
161 162 1.270041 TGCATGCACGTAGACAAGACA 60.270 47.619 18.46 0.00 0.00 3.41
162 163 1.428448 TGCATGCACGTAGACAAGAC 58.572 50.000 18.46 0.00 0.00 3.01
163 164 2.385013 ATGCATGCACGTAGACAAGA 57.615 45.000 25.37 0.00 0.00 3.02
164 165 3.476295 AAATGCATGCACGTAGACAAG 57.524 42.857 25.37 0.00 0.00 3.16
165 166 3.913548 AAAATGCATGCACGTAGACAA 57.086 38.095 25.37 0.00 0.00 3.18
166 167 3.913548 AAAAATGCATGCACGTAGACA 57.086 38.095 25.37 0.00 0.00 3.41
184 185 6.989169 CCCACACCTTCACAAAATCATAAAAA 59.011 34.615 0.00 0.00 0.00 1.94
185 186 6.520272 CCCACACCTTCACAAAATCATAAAA 58.480 36.000 0.00 0.00 0.00 1.52
186 187 5.510520 GCCCACACCTTCACAAAATCATAAA 60.511 40.000 0.00 0.00 0.00 1.40
187 188 4.021544 GCCCACACCTTCACAAAATCATAA 60.022 41.667 0.00 0.00 0.00 1.90
188 189 3.509575 GCCCACACCTTCACAAAATCATA 59.490 43.478 0.00 0.00 0.00 2.15
189 190 2.299867 GCCCACACCTTCACAAAATCAT 59.700 45.455 0.00 0.00 0.00 2.45
190 191 1.686052 GCCCACACCTTCACAAAATCA 59.314 47.619 0.00 0.00 0.00 2.57
191 192 1.686052 TGCCCACACCTTCACAAAATC 59.314 47.619 0.00 0.00 0.00 2.17
192 193 1.786937 TGCCCACACCTTCACAAAAT 58.213 45.000 0.00 0.00 0.00 1.82
193 194 1.561643 TTGCCCACACCTTCACAAAA 58.438 45.000 0.00 0.00 0.00 2.44
194 195 1.561643 TTTGCCCACACCTTCACAAA 58.438 45.000 0.00 0.00 0.00 2.83
195 196 1.480137 CTTTTGCCCACACCTTCACAA 59.520 47.619 0.00 0.00 0.00 3.33
196 197 1.110442 CTTTTGCCCACACCTTCACA 58.890 50.000 0.00 0.00 0.00 3.58
197 198 1.398692 TCTTTTGCCCACACCTTCAC 58.601 50.000 0.00 0.00 0.00 3.18
198 199 1.754226 GTTCTTTTGCCCACACCTTCA 59.246 47.619 0.00 0.00 0.00 3.02
199 200 2.031870 AGTTCTTTTGCCCACACCTTC 58.968 47.619 0.00 0.00 0.00 3.46
200 201 2.159179 AGTTCTTTTGCCCACACCTT 57.841 45.000 0.00 0.00 0.00 3.50
201 202 2.159179 AAGTTCTTTTGCCCACACCT 57.841 45.000 0.00 0.00 0.00 4.00
202 203 3.572255 TGATAAGTTCTTTTGCCCACACC 59.428 43.478 0.00 0.00 0.00 4.16
203 204 4.546570 GTGATAAGTTCTTTTGCCCACAC 58.453 43.478 0.00 0.00 0.00 3.82
204 205 3.572255 GGTGATAAGTTCTTTTGCCCACA 59.428 43.478 0.00 0.00 0.00 4.17
205 206 3.826729 AGGTGATAAGTTCTTTTGCCCAC 59.173 43.478 0.00 0.00 0.00 4.61
206 207 4.079253 GAGGTGATAAGTTCTTTTGCCCA 58.921 43.478 0.00 0.00 0.00 5.36
207 208 3.444034 GGAGGTGATAAGTTCTTTTGCCC 59.556 47.826 0.00 0.00 0.00 5.36
208 209 4.079253 TGGAGGTGATAAGTTCTTTTGCC 58.921 43.478 0.00 0.00 0.00 4.52
209 210 4.518970 TGTGGAGGTGATAAGTTCTTTTGC 59.481 41.667 0.00 0.00 0.00 3.68
210 211 6.633500 TTGTGGAGGTGATAAGTTCTTTTG 57.367 37.500 0.00 0.00 0.00 2.44
211 212 7.287696 ACATTTGTGGAGGTGATAAGTTCTTTT 59.712 33.333 0.00 0.00 0.00 2.27
212 213 6.777580 ACATTTGTGGAGGTGATAAGTTCTTT 59.222 34.615 0.00 0.00 0.00 2.52
213 214 6.306987 ACATTTGTGGAGGTGATAAGTTCTT 58.693 36.000 0.00 0.00 0.00 2.52
214 215 5.880901 ACATTTGTGGAGGTGATAAGTTCT 58.119 37.500 0.00 0.00 0.00 3.01
215 216 6.575162 AACATTTGTGGAGGTGATAAGTTC 57.425 37.500 0.00 0.00 0.00 3.01
216 217 8.109634 AGATAACATTTGTGGAGGTGATAAGTT 58.890 33.333 0.00 0.00 0.00 2.66
217 218 7.633789 AGATAACATTTGTGGAGGTGATAAGT 58.366 34.615 0.00 0.00 0.00 2.24
218 219 8.511604 AAGATAACATTTGTGGAGGTGATAAG 57.488 34.615 0.00 0.00 0.00 1.73
219 220 8.877864 AAAGATAACATTTGTGGAGGTGATAA 57.122 30.769 0.00 0.00 0.00 1.75
220 221 8.877864 AAAAGATAACATTTGTGGAGGTGATA 57.122 30.769 0.00 0.00 0.00 2.15
221 222 7.781324 AAAAGATAACATTTGTGGAGGTGAT 57.219 32.000 0.00 0.00 0.00 3.06
222 223 7.595819 AAAAAGATAACATTTGTGGAGGTGA 57.404 32.000 0.00 0.00 0.00 4.02
247 248 1.573108 TTTGTGGACCCCTGCAAAAA 58.427 45.000 0.00 0.00 30.95 1.94
248 249 1.415659 CATTTGTGGACCCCTGCAAAA 59.584 47.619 0.00 0.00 34.78 2.44
249 250 1.047002 CATTTGTGGACCCCTGCAAA 58.953 50.000 0.00 0.00 35.24 3.68
250 251 0.105760 ACATTTGTGGACCCCTGCAA 60.106 50.000 0.00 0.00 0.00 4.08
251 252 0.774276 TACATTTGTGGACCCCTGCA 59.226 50.000 0.00 0.00 0.00 4.41
252 253 1.917872 TTACATTTGTGGACCCCTGC 58.082 50.000 0.00 0.00 0.00 4.85
253 254 3.696045 TGATTACATTTGTGGACCCCTG 58.304 45.455 0.00 0.00 0.00 4.45
254 255 4.230502 AGATGATTACATTTGTGGACCCCT 59.769 41.667 0.00 0.00 36.82 4.79
255 256 4.536765 AGATGATTACATTTGTGGACCCC 58.463 43.478 0.00 0.00 36.82 4.95
256 257 6.260936 CAGTAGATGATTACATTTGTGGACCC 59.739 42.308 0.00 0.00 36.82 4.46
257 258 6.823689 ACAGTAGATGATTACATTTGTGGACC 59.176 38.462 0.00 0.00 36.82 4.46
258 259 7.849804 ACAGTAGATGATTACATTTGTGGAC 57.150 36.000 0.00 0.00 36.82 4.02
259 260 9.378551 GTTACAGTAGATGATTACATTTGTGGA 57.621 33.333 0.00 0.00 36.82 4.02
260 261 9.383519 AGTTACAGTAGATGATTACATTTGTGG 57.616 33.333 0.00 0.00 36.82 4.17
269 270 9.916360 TGGAGTAGAAGTTACAGTAGATGATTA 57.084 33.333 0.00 0.00 0.00 1.75
270 271 8.824756 TGGAGTAGAAGTTACAGTAGATGATT 57.175 34.615 0.00 0.00 0.00 2.57
271 272 9.073475 GATGGAGTAGAAGTTACAGTAGATGAT 57.927 37.037 0.00 0.00 0.00 2.45
272 273 8.053355 TGATGGAGTAGAAGTTACAGTAGATGA 58.947 37.037 0.00 0.00 0.00 2.92
273 274 8.226819 TGATGGAGTAGAAGTTACAGTAGATG 57.773 38.462 0.00 0.00 0.00 2.90
274 275 8.056400 ACTGATGGAGTAGAAGTTACAGTAGAT 58.944 37.037 0.00 0.00 34.95 1.98
275 276 7.403671 ACTGATGGAGTAGAAGTTACAGTAGA 58.596 38.462 0.00 0.00 34.95 2.59
276 277 7.633193 ACTGATGGAGTAGAAGTTACAGTAG 57.367 40.000 0.00 0.00 34.95 2.57
277 278 7.122353 GGAACTGATGGAGTAGAAGTTACAGTA 59.878 40.741 0.00 0.00 35.51 2.74
278 279 6.071278 GGAACTGATGGAGTAGAAGTTACAGT 60.071 42.308 0.00 0.00 37.62 3.55
279 280 6.071334 TGGAACTGATGGAGTAGAAGTTACAG 60.071 42.308 0.00 0.00 36.90 2.74
280 281 5.778241 TGGAACTGATGGAGTAGAAGTTACA 59.222 40.000 0.00 0.00 38.94 2.41
281 282 6.282199 TGGAACTGATGGAGTAGAAGTTAC 57.718 41.667 0.00 0.00 33.09 2.50
282 283 6.928348 TTGGAACTGATGGAGTAGAAGTTA 57.072 37.500 0.00 0.00 33.09 2.24
283 284 5.825593 TTGGAACTGATGGAGTAGAAGTT 57.174 39.130 0.00 0.00 33.09 2.66
284 285 5.825593 TTTGGAACTGATGGAGTAGAAGT 57.174 39.130 0.00 0.00 33.09 3.01
285 286 8.043710 AGTAATTTGGAACTGATGGAGTAGAAG 58.956 37.037 0.00 0.00 33.09 2.85
286 287 7.824289 CAGTAATTTGGAACTGATGGAGTAGAA 59.176 37.037 0.53 0.00 44.79 2.10
287 288 7.331026 CAGTAATTTGGAACTGATGGAGTAGA 58.669 38.462 0.53 0.00 44.79 2.59
288 289 6.540189 CCAGTAATTTGGAACTGATGGAGTAG 59.460 42.308 7.52 0.00 44.79 2.57
289 290 6.012858 ACCAGTAATTTGGAACTGATGGAGTA 60.013 38.462 7.52 0.00 44.79 2.59
290 291 5.222130 ACCAGTAATTTGGAACTGATGGAGT 60.222 40.000 7.52 0.00 44.79 3.85
291 292 5.256474 ACCAGTAATTTGGAACTGATGGAG 58.744 41.667 7.52 0.00 44.79 3.86
292 293 5.253330 GACCAGTAATTTGGAACTGATGGA 58.747 41.667 7.52 0.00 44.79 3.41
293 294 4.094887 CGACCAGTAATTTGGAACTGATGG 59.905 45.833 7.52 0.00 44.79 3.51
294 295 4.437390 GCGACCAGTAATTTGGAACTGATG 60.437 45.833 7.52 0.00 44.79 3.07
295 296 3.689649 GCGACCAGTAATTTGGAACTGAT 59.310 43.478 7.52 0.00 44.79 2.90
296 297 3.071479 GCGACCAGTAATTTGGAACTGA 58.929 45.455 7.52 0.00 44.79 3.41
297 298 2.811431 TGCGACCAGTAATTTGGAACTG 59.189 45.455 3.10 1.40 40.87 3.16
298 299 2.812011 GTGCGACCAGTAATTTGGAACT 59.188 45.455 3.10 0.00 40.87 3.01
299 300 2.550606 TGTGCGACCAGTAATTTGGAAC 59.449 45.455 3.10 0.00 40.87 3.62
300 301 2.852449 TGTGCGACCAGTAATTTGGAA 58.148 42.857 3.10 0.00 40.87 3.53
301 302 2.552599 TGTGCGACCAGTAATTTGGA 57.447 45.000 3.10 0.00 40.87 3.53
302 303 3.634568 TTTGTGCGACCAGTAATTTGG 57.365 42.857 0.00 0.00 44.09 3.28
303 304 3.919804 CCATTTGTGCGACCAGTAATTTG 59.080 43.478 0.00 0.00 0.00 2.32
304 305 3.823873 TCCATTTGTGCGACCAGTAATTT 59.176 39.130 0.00 0.00 0.00 1.82
305 306 3.417101 TCCATTTGTGCGACCAGTAATT 58.583 40.909 0.00 0.00 0.00 1.40
306 307 3.066291 TCCATTTGTGCGACCAGTAAT 57.934 42.857 0.00 0.00 0.00 1.89
307 308 2.552599 TCCATTTGTGCGACCAGTAA 57.447 45.000 0.00 0.00 0.00 2.24
308 309 2.290008 ACATCCATTTGTGCGACCAGTA 60.290 45.455 0.00 0.00 0.00 2.74
309 310 1.167851 CATCCATTTGTGCGACCAGT 58.832 50.000 0.00 0.00 0.00 4.00
310 311 1.167851 ACATCCATTTGTGCGACCAG 58.832 50.000 0.00 0.00 0.00 4.00
311 312 2.481289 TACATCCATTTGTGCGACCA 57.519 45.000 0.00 0.00 0.00 4.02
312 313 3.206150 AGATACATCCATTTGTGCGACC 58.794 45.455 0.00 0.00 0.00 4.79
313 314 5.289595 TCTAGATACATCCATTTGTGCGAC 58.710 41.667 0.00 0.00 0.00 5.19
314 315 5.529581 TCTAGATACATCCATTTGTGCGA 57.470 39.130 0.00 0.00 0.00 5.10
315 316 5.755375 AGTTCTAGATACATCCATTTGTGCG 59.245 40.000 0.00 0.00 0.00 5.34
316 317 8.662781 TTAGTTCTAGATACATCCATTTGTGC 57.337 34.615 0.00 0.00 0.00 4.57
342 343 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
343 344 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
344 345 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
345 346 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
346 347 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
347 348 5.510430 TCGCAGGTATGGATGTATCTAGAT 58.490 41.667 10.73 10.73 0.00 1.98
348 349 4.918588 TCGCAGGTATGGATGTATCTAGA 58.081 43.478 0.00 0.00 0.00 2.43
349 350 5.843673 ATCGCAGGTATGGATGTATCTAG 57.156 43.478 0.00 0.00 0.00 2.43
350 351 6.890268 ACTTATCGCAGGTATGGATGTATCTA 59.110 38.462 0.00 0.00 0.00 1.98
351 352 5.717178 ACTTATCGCAGGTATGGATGTATCT 59.283 40.000 0.00 0.00 0.00 1.98
352 353 5.967088 ACTTATCGCAGGTATGGATGTATC 58.033 41.667 0.00 0.00 0.00 2.24
353 354 7.476540 TTACTTATCGCAGGTATGGATGTAT 57.523 36.000 0.00 0.00 0.00 2.29
354 355 6.904463 TTACTTATCGCAGGTATGGATGTA 57.096 37.500 0.00 0.00 0.00 2.29
355 356 5.801531 TTACTTATCGCAGGTATGGATGT 57.198 39.130 0.00 0.00 0.00 3.06
356 357 6.035005 CGAATTACTTATCGCAGGTATGGATG 59.965 42.308 0.00 0.00 31.71 3.51
357 358 6.100004 CGAATTACTTATCGCAGGTATGGAT 58.900 40.000 0.00 0.00 31.71 3.41
358 359 5.466819 CGAATTACTTATCGCAGGTATGGA 58.533 41.667 0.00 0.00 31.71 3.41
359 360 4.625742 CCGAATTACTTATCGCAGGTATGG 59.374 45.833 0.00 0.00 37.73 2.74
360 361 5.466819 TCCGAATTACTTATCGCAGGTATG 58.533 41.667 0.00 0.00 37.73 2.39
361 362 5.717078 TCCGAATTACTTATCGCAGGTAT 57.283 39.130 0.00 0.00 37.73 2.73
362 363 5.284079 GTTCCGAATTACTTATCGCAGGTA 58.716 41.667 0.00 0.00 37.73 3.08
363 364 4.117685 GTTCCGAATTACTTATCGCAGGT 58.882 43.478 0.00 0.00 37.73 4.00
364 365 3.181774 CGTTCCGAATTACTTATCGCAGG 59.818 47.826 0.00 0.00 37.73 4.85
365 366 3.181774 CCGTTCCGAATTACTTATCGCAG 59.818 47.826 0.00 0.00 37.73 5.18
366 367 3.117794 CCGTTCCGAATTACTTATCGCA 58.882 45.455 0.00 0.00 37.73 5.10
367 368 3.374745 TCCGTTCCGAATTACTTATCGC 58.625 45.455 0.00 0.00 37.73 4.58
368 369 3.979495 CCTCCGTTCCGAATTACTTATCG 59.021 47.826 0.00 0.00 38.74 2.92
369 370 4.038402 TCCCTCCGTTCCGAATTACTTATC 59.962 45.833 0.00 0.00 0.00 1.75
370 371 3.962718 TCCCTCCGTTCCGAATTACTTAT 59.037 43.478 0.00 0.00 0.00 1.73
371 372 3.364549 TCCCTCCGTTCCGAATTACTTA 58.635 45.455 0.00 0.00 0.00 2.24
372 373 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
373 374 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
374 375 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
375 376 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
376 377 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
377 378 1.755380 CTTACTCCCTCCGTTCCGAAT 59.245 52.381 0.00 0.00 0.00 3.34
378 379 1.180029 CTTACTCCCTCCGTTCCGAA 58.820 55.000 0.00 0.00 0.00 4.30
379 380 0.038744 ACTTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
380 381 0.172803 CACTTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
381 382 1.204231 GTCACTTACTCCCTCCGTTCC 59.796 57.143 0.00 0.00 0.00 3.62
382 383 1.891150 TGTCACTTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
383 384 2.005370 TGTCACTTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
384 385 1.893801 CTTGTCACTTACTCCCTCCGT 59.106 52.381 0.00 0.00 0.00 4.69
385 386 1.404315 GCTTGTCACTTACTCCCTCCG 60.404 57.143 0.00 0.00 0.00 4.63
386 387 1.066071 GGCTTGTCACTTACTCCCTCC 60.066 57.143 0.00 0.00 0.00 4.30
387 388 1.623811 TGGCTTGTCACTTACTCCCTC 59.376 52.381 0.00 0.00 0.00 4.30
388 389 1.625818 CTGGCTTGTCACTTACTCCCT 59.374 52.381 0.00 0.00 0.00 4.20
389 390 1.339151 CCTGGCTTGTCACTTACTCCC 60.339 57.143 0.00 0.00 0.00 4.30
390 391 1.348036 ACCTGGCTTGTCACTTACTCC 59.652 52.381 0.00 0.00 0.00 3.85
391 392 2.037251 TCACCTGGCTTGTCACTTACTC 59.963 50.000 0.00 0.00 0.00 2.59
392 393 2.047061 TCACCTGGCTTGTCACTTACT 58.953 47.619 0.00 0.00 0.00 2.24
393 394 2.543777 TCACCTGGCTTGTCACTTAC 57.456 50.000 0.00 0.00 0.00 2.34
394 395 3.569194 TTTCACCTGGCTTGTCACTTA 57.431 42.857 0.00 0.00 0.00 2.24
395 396 2.435372 TTTCACCTGGCTTGTCACTT 57.565 45.000 0.00 0.00 0.00 3.16
396 397 2.435372 TTTTCACCTGGCTTGTCACT 57.565 45.000 0.00 0.00 0.00 3.41
397 398 3.733443 AATTTTCACCTGGCTTGTCAC 57.267 42.857 0.00 0.00 0.00 3.67
398 399 4.161189 TCAAAATTTTCACCTGGCTTGTCA 59.839 37.500 0.00 0.00 0.00 3.58
399 400 4.507756 GTCAAAATTTTCACCTGGCTTGTC 59.492 41.667 0.00 0.00 0.00 3.18
400 401 4.441792 GTCAAAATTTTCACCTGGCTTGT 58.558 39.130 0.00 0.00 0.00 3.16
401 402 3.809279 GGTCAAAATTTTCACCTGGCTTG 59.191 43.478 16.05 0.00 0.00 4.01
402 403 3.454082 TGGTCAAAATTTTCACCTGGCTT 59.546 39.130 22.52 0.00 0.00 4.35
403 404 3.037549 TGGTCAAAATTTTCACCTGGCT 58.962 40.909 22.52 0.00 0.00 4.75
404 405 3.467374 TGGTCAAAATTTTCACCTGGC 57.533 42.857 22.52 4.35 0.00 4.85
405 406 4.202346 ACCATGGTCAAAATTTTCACCTGG 60.202 41.667 26.16 26.16 35.22 4.45
406 407 4.959723 ACCATGGTCAAAATTTTCACCTG 58.040 39.130 22.52 17.14 0.00 4.00
407 408 4.901250 AGACCATGGTCAAAATTTTCACCT 59.099 37.500 39.38 16.66 46.76 4.00
408 409 5.213891 AGACCATGGTCAAAATTTTCACC 57.786 39.130 39.38 16.42 46.76 4.02
409 410 6.048509 ACAAGACCATGGTCAAAATTTTCAC 58.951 36.000 39.38 14.70 46.76 3.18
410 411 6.232581 ACAAGACCATGGTCAAAATTTTCA 57.767 33.333 39.38 0.00 46.76 2.69
411 412 7.552458 AAACAAGACCATGGTCAAAATTTTC 57.448 32.000 39.38 15.91 46.76 2.29
412 413 7.936496 AAAACAAGACCATGGTCAAAATTTT 57.064 28.000 39.38 31.98 46.76 1.82
413 414 7.936496 AAAAACAAGACCATGGTCAAAATTT 57.064 28.000 39.38 29.81 46.76 1.82
440 441 8.547894 CGATGAATTAGACCGTTTTGATTGATA 58.452 33.333 0.00 0.00 0.00 2.15
441 442 7.065803 ACGATGAATTAGACCGTTTTGATTGAT 59.934 33.333 0.00 0.00 0.00 2.57
442 443 6.370442 ACGATGAATTAGACCGTTTTGATTGA 59.630 34.615 0.00 0.00 0.00 2.57
443 444 6.542852 ACGATGAATTAGACCGTTTTGATTG 58.457 36.000 0.00 0.00 0.00 2.67
444 445 6.737254 ACGATGAATTAGACCGTTTTGATT 57.263 33.333 0.00 0.00 0.00 2.57
445 446 7.010183 CACTACGATGAATTAGACCGTTTTGAT 59.990 37.037 0.00 0.00 35.05 2.57
446 447 6.309494 CACTACGATGAATTAGACCGTTTTGA 59.691 38.462 0.00 0.00 35.05 2.69
447 448 6.309494 TCACTACGATGAATTAGACCGTTTTG 59.691 38.462 0.00 0.00 35.05 2.44
448 449 6.392354 TCACTACGATGAATTAGACCGTTTT 58.608 36.000 0.00 0.00 35.05 2.43
449 450 5.957798 TCACTACGATGAATTAGACCGTTT 58.042 37.500 0.00 0.00 35.05 3.60
450 451 5.125097 ACTCACTACGATGAATTAGACCGTT 59.875 40.000 0.00 0.00 35.05 4.44
451 452 4.639310 ACTCACTACGATGAATTAGACCGT 59.361 41.667 0.00 0.00 37.27 4.83
452 453 4.970611 CACTCACTACGATGAATTAGACCG 59.029 45.833 0.00 0.00 0.00 4.79
453 454 5.744345 CACACTCACTACGATGAATTAGACC 59.256 44.000 0.00 0.00 0.00 3.85
454 455 5.744345 CCACACTCACTACGATGAATTAGAC 59.256 44.000 0.00 0.00 0.00 2.59
455 456 5.678871 GCCACACTCACTACGATGAATTAGA 60.679 44.000 0.00 0.00 0.00 2.10
456 457 4.504461 GCCACACTCACTACGATGAATTAG 59.496 45.833 0.00 0.00 0.00 1.73
457 458 4.159693 AGCCACACTCACTACGATGAATTA 59.840 41.667 0.00 0.00 0.00 1.40
458 459 3.055819 AGCCACACTCACTACGATGAATT 60.056 43.478 0.00 0.00 0.00 2.17
459 460 2.497675 AGCCACACTCACTACGATGAAT 59.502 45.455 0.00 0.00 0.00 2.57
460 461 1.893137 AGCCACACTCACTACGATGAA 59.107 47.619 0.00 0.00 0.00 2.57
461 462 1.472878 GAGCCACACTCACTACGATGA 59.527 52.381 0.00 0.00 45.49 2.92
462 463 1.914634 GAGCCACACTCACTACGATG 58.085 55.000 0.00 0.00 45.49 3.84
471 472 4.702131 AGAACATTTATTGGAGCCACACTC 59.298 41.667 0.00 0.00 45.45 3.51
472 473 4.666512 AGAACATTTATTGGAGCCACACT 58.333 39.130 0.00 0.00 0.00 3.55
473 474 5.391312 AAGAACATTTATTGGAGCCACAC 57.609 39.130 0.00 0.00 0.00 3.82
474 475 6.267471 AGAAAAGAACATTTATTGGAGCCACA 59.733 34.615 0.00 0.00 0.00 4.17
475 476 6.691508 AGAAAAGAACATTTATTGGAGCCAC 58.308 36.000 0.00 0.00 0.00 5.01
476 477 6.916360 AGAAAAGAACATTTATTGGAGCCA 57.084 33.333 0.00 0.00 0.00 4.75
477 478 9.358872 CTAAAGAAAAGAACATTTATTGGAGCC 57.641 33.333 0.00 0.00 0.00 4.70
478 479 9.358872 CCTAAAGAAAAGAACATTTATTGGAGC 57.641 33.333 0.00 0.00 0.00 4.70
479 480 9.358872 GCCTAAAGAAAAGAACATTTATTGGAG 57.641 33.333 0.00 0.00 0.00 3.86
480 481 9.088987 AGCCTAAAGAAAAGAACATTTATTGGA 57.911 29.630 0.00 0.00 0.00 3.53
486 487 9.355916 AGTTCTAGCCTAAAGAAAAGAACATTT 57.644 29.630 13.62 0.00 43.24 2.32
487 488 8.926092 AGTTCTAGCCTAAAGAAAAGAACATT 57.074 30.769 13.62 0.00 43.24 2.71
488 489 9.660180 CTAGTTCTAGCCTAAAGAAAAGAACAT 57.340 33.333 13.62 4.03 43.24 2.71
489 490 8.867097 TCTAGTTCTAGCCTAAAGAAAAGAACA 58.133 33.333 13.62 2.09 43.24 3.18
490 491 9.708092 TTCTAGTTCTAGCCTAAAGAAAAGAAC 57.292 33.333 5.16 5.16 41.86 3.01
491 492 9.708092 GTTCTAGTTCTAGCCTAAAGAAAAGAA 57.292 33.333 2.31 0.00 36.20 2.52
492 493 8.027771 CGTTCTAGTTCTAGCCTAAAGAAAAGA 58.972 37.037 2.31 0.00 34.86 2.52
493 494 8.027771 TCGTTCTAGTTCTAGCCTAAAGAAAAG 58.972 37.037 2.31 0.00 34.86 2.27
494 495 7.811713 GTCGTTCTAGTTCTAGCCTAAAGAAAA 59.188 37.037 2.31 0.00 34.86 2.29
495 496 7.176340 AGTCGTTCTAGTTCTAGCCTAAAGAAA 59.824 37.037 2.31 0.00 34.86 2.52
496 497 6.658391 AGTCGTTCTAGTTCTAGCCTAAAGAA 59.342 38.462 2.31 0.00 0.00 2.52
497 498 6.093771 CAGTCGTTCTAGTTCTAGCCTAAAGA 59.906 42.308 2.31 0.00 0.00 2.52
498 499 6.259638 CAGTCGTTCTAGTTCTAGCCTAAAG 58.740 44.000 2.31 0.00 0.00 1.85
499 500 5.392811 GCAGTCGTTCTAGTTCTAGCCTAAA 60.393 44.000 2.31 0.00 0.00 1.85
500 501 4.096081 GCAGTCGTTCTAGTTCTAGCCTAA 59.904 45.833 2.31 0.00 0.00 2.69
501 502 3.626670 GCAGTCGTTCTAGTTCTAGCCTA 59.373 47.826 2.31 0.00 0.00 3.93
502 503 2.424246 GCAGTCGTTCTAGTTCTAGCCT 59.576 50.000 2.31 0.00 0.00 4.58
503 504 2.163815 TGCAGTCGTTCTAGTTCTAGCC 59.836 50.000 2.31 0.00 0.00 3.93
504 505 3.172824 GTGCAGTCGTTCTAGTTCTAGC 58.827 50.000 0.00 0.00 0.00 3.42
505 506 3.120269 ACGTGCAGTCGTTCTAGTTCTAG 60.120 47.826 0.00 0.83 41.37 2.43
506 507 2.810274 ACGTGCAGTCGTTCTAGTTCTA 59.190 45.455 0.00 0.00 41.37 2.10
507 508 1.607628 ACGTGCAGTCGTTCTAGTTCT 59.392 47.619 0.00 0.00 41.37 3.01
508 509 2.047679 ACGTGCAGTCGTTCTAGTTC 57.952 50.000 0.00 0.00 41.37 3.01
516 517 1.713246 CAACACAACGTGCAGTCGT 59.287 52.632 0.00 0.00 46.19 4.34
517 518 1.651132 GCAACACAACGTGCAGTCG 60.651 57.895 0.00 0.00 36.98 4.18
518 519 1.298339 GGCAACACAACGTGCAGTC 60.298 57.895 0.00 0.00 36.98 3.51
519 520 1.312371 AAGGCAACACAACGTGCAGT 61.312 50.000 0.00 0.00 36.98 4.40
520 521 0.866906 CAAGGCAACACAACGTGCAG 60.867 55.000 0.00 0.00 36.98 4.41
521 522 1.138459 CAAGGCAACACAACGTGCA 59.862 52.632 0.00 0.00 36.98 4.57
522 523 2.230264 GCAAGGCAACACAACGTGC 61.230 57.895 0.00 0.00 36.98 5.34
523 524 0.866906 CAGCAAGGCAACACAACGTG 60.867 55.000 0.00 0.00 39.75 4.49
524 525 1.433064 CAGCAAGGCAACACAACGT 59.567 52.632 0.00 0.00 41.41 3.99
525 526 1.945662 GCAGCAAGGCAACACAACG 60.946 57.895 0.00 0.00 41.41 4.10
526 527 1.141449 TGCAGCAAGGCAACACAAC 59.859 52.632 0.00 0.00 41.65 3.32
527 528 3.613527 TGCAGCAAGGCAACACAA 58.386 50.000 0.00 0.00 41.65 3.33
533 534 2.282674 CCCTCTTGCAGCAAGGCA 60.283 61.111 30.71 14.73 41.33 4.75
534 535 3.756727 GCCCTCTTGCAGCAAGGC 61.757 66.667 30.71 24.40 41.33 4.35
535 536 3.066814 GGCCCTCTTGCAGCAAGG 61.067 66.667 30.71 21.60 41.33 3.61
536 537 3.437795 CGGCCCTCTTGCAGCAAG 61.438 66.667 26.87 26.87 42.25 4.01
537 538 3.952508 TCGGCCCTCTTGCAGCAA 61.953 61.111 7.81 7.81 0.00 3.91
538 539 4.704833 GTCGGCCCTCTTGCAGCA 62.705 66.667 0.00 0.00 0.00 4.41
539 540 4.400961 AGTCGGCCCTCTTGCAGC 62.401 66.667 0.00 0.00 0.00 5.25
540 541 2.125350 GAGTCGGCCCTCTTGCAG 60.125 66.667 0.00 0.00 0.00 4.41
541 542 4.069232 CGAGTCGGCCCTCTTGCA 62.069 66.667 4.10 0.00 0.00 4.08
542 543 3.591254 AACGAGTCGGCCCTCTTGC 62.591 63.158 18.30 0.00 0.00 4.01
543 544 1.004918 AAACGAGTCGGCCCTCTTG 60.005 57.895 18.30 2.08 0.00 3.02
544 545 1.004918 CAAACGAGTCGGCCCTCTT 60.005 57.895 18.30 0.00 0.00 2.85
545 546 2.657237 CAAACGAGTCGGCCCTCT 59.343 61.111 18.30 0.00 0.00 3.69
546 547 2.221906 TAGCAAACGAGTCGGCCCTC 62.222 60.000 18.30 0.00 0.00 4.30
547 548 1.614241 ATAGCAAACGAGTCGGCCCT 61.614 55.000 18.30 9.63 0.00 5.19
548 549 0.743345 AATAGCAAACGAGTCGGCCC 60.743 55.000 18.30 2.13 0.00 5.80
549 550 0.651031 GAATAGCAAACGAGTCGGCC 59.349 55.000 18.30 0.00 0.00 6.13
550 551 0.297820 CGAATAGCAAACGAGTCGGC 59.702 55.000 18.30 10.80 35.73 5.54
551 552 1.846782 CTCGAATAGCAAACGAGTCGG 59.153 52.381 18.30 0.00 45.23 4.79
556 557 5.917541 AGAAAAACTCGAATAGCAAACGA 57.082 34.783 0.00 0.00 34.90 3.85
557 558 6.363473 AGAAGAAAAACTCGAATAGCAAACG 58.637 36.000 0.00 0.00 0.00 3.60
558 559 8.070769 AGAAGAAGAAAAACTCGAATAGCAAAC 58.929 33.333 0.00 0.00 0.00 2.93
559 560 8.154649 AGAAGAAGAAAAACTCGAATAGCAAA 57.845 30.769 0.00 0.00 0.00 3.68
560 561 7.730364 AGAAGAAGAAAAACTCGAATAGCAA 57.270 32.000 0.00 0.00 0.00 3.91
561 562 7.730364 AAGAAGAAGAAAAACTCGAATAGCA 57.270 32.000 0.00 0.00 0.00 3.49
562 563 9.452065 AAAAAGAAGAAGAAAAACTCGAATAGC 57.548 29.630 0.00 0.00 0.00 2.97
585 586 7.531280 CTCGAATAGCATTCTCTCTCAAAAA 57.469 36.000 7.12 0.00 0.00 1.94
636 637 1.369321 GGGCTCCCAGCTCGAATAG 59.631 63.158 0.00 0.00 41.99 1.73
637 638 3.550974 GGGCTCCCAGCTCGAATA 58.449 61.111 0.00 0.00 41.99 1.75
646 647 3.096092 GTGTGATATTTTTGGGCTCCCA 58.904 45.455 2.93 2.93 45.63 4.37
647 648 2.099098 CGTGTGATATTTTTGGGCTCCC 59.901 50.000 0.00 0.00 0.00 4.30
648 649 3.013921 TCGTGTGATATTTTTGGGCTCC 58.986 45.455 0.00 0.00 0.00 4.70
649 650 4.438744 CCTTCGTGTGATATTTTTGGGCTC 60.439 45.833 0.00 0.00 0.00 4.70
650 651 3.443681 CCTTCGTGTGATATTTTTGGGCT 59.556 43.478 0.00 0.00 0.00 5.19
651 652 3.192633 ACCTTCGTGTGATATTTTTGGGC 59.807 43.478 0.00 0.00 0.00 5.36
652 653 4.457603 TGACCTTCGTGTGATATTTTTGGG 59.542 41.667 0.00 0.00 0.00 4.12
653 654 5.181245 ACTGACCTTCGTGTGATATTTTTGG 59.819 40.000 0.00 0.00 0.00 3.28
654 655 6.241207 ACTGACCTTCGTGTGATATTTTTG 57.759 37.500 0.00 0.00 0.00 2.44
655 656 5.120208 CGACTGACCTTCGTGTGATATTTTT 59.880 40.000 0.00 0.00 0.00 1.94
656 657 4.625742 CGACTGACCTTCGTGTGATATTTT 59.374 41.667 0.00 0.00 0.00 1.82
657 658 4.174009 CGACTGACCTTCGTGTGATATTT 58.826 43.478 0.00 0.00 0.00 1.40
658 659 3.770666 CGACTGACCTTCGTGTGATATT 58.229 45.455 0.00 0.00 0.00 1.28
659 660 2.479730 GCGACTGACCTTCGTGTGATAT 60.480 50.000 0.00 0.00 38.77 1.63
660 661 1.135489 GCGACTGACCTTCGTGTGATA 60.135 52.381 0.00 0.00 38.77 2.15
661 662 0.388649 GCGACTGACCTTCGTGTGAT 60.389 55.000 0.00 0.00 38.77 3.06
662 663 1.007734 GCGACTGACCTTCGTGTGA 60.008 57.895 0.00 0.00 38.77 3.58
839 850 2.107141 GAGGTGGCGGGATTCGAG 59.893 66.667 0.00 0.00 42.43 4.04
909 923 2.943265 ATGCAGGGCCAGGAACCT 60.943 61.111 6.18 0.00 37.66 3.50
915 929 0.681887 TCATTGTGATGCAGGGCCAG 60.682 55.000 6.18 0.00 33.14 4.85
917 931 0.672342 GATCATTGTGATGCAGGGCC 59.328 55.000 0.00 0.00 37.20 5.80
951 973 3.181495 CGAAGATAAAGCTGGAGACGACT 60.181 47.826 0.00 0.00 0.00 4.18
1278 1339 3.818210 AGCTCAGTCCATCGATAGTACAG 59.182 47.826 0.00 0.00 37.40 2.74
1279 1340 3.565902 CAGCTCAGTCCATCGATAGTACA 59.434 47.826 0.00 0.00 37.40 2.90
1280 1341 3.610585 GCAGCTCAGTCCATCGATAGTAC 60.611 52.174 0.00 0.00 37.40 2.73
1281 1342 2.554462 GCAGCTCAGTCCATCGATAGTA 59.446 50.000 0.00 0.00 37.40 1.82
1282 1343 1.339610 GCAGCTCAGTCCATCGATAGT 59.660 52.381 0.00 0.00 37.40 2.12
1283 1344 1.665448 CGCAGCTCAGTCCATCGATAG 60.665 57.143 0.00 0.00 0.00 2.08
1284 1345 0.312102 CGCAGCTCAGTCCATCGATA 59.688 55.000 0.00 0.00 0.00 2.92
1285 1346 1.067084 CGCAGCTCAGTCCATCGAT 59.933 57.895 0.00 0.00 0.00 3.59
1330 1392 0.742990 CGGACTTGGATTAGCGGCAA 60.743 55.000 1.45 0.00 0.00 4.52
1410 1472 2.811322 ATGATGTCAGGGAGGGAGAT 57.189 50.000 0.00 0.00 0.00 2.75
1428 1497 5.088739 GCGAAATGTCAAATCTGTCGAAAT 58.911 37.500 0.00 0.00 0.00 2.17
1430 1499 3.120338 GGCGAAATGTCAAATCTGTCGAA 60.120 43.478 0.00 0.00 0.00 3.71
1432 1501 2.416547 AGGCGAAATGTCAAATCTGTCG 59.583 45.455 0.00 0.00 0.00 4.35
1482 1551 3.064207 GCCAAATAGTCACTGACGTTCA 58.936 45.455 3.46 0.00 37.67 3.18
1495 1564 6.766944 AGAGAGAGATCACAAATGCCAAATAG 59.233 38.462 0.00 0.00 0.00 1.73
1496 1565 6.656902 AGAGAGAGATCACAAATGCCAAATA 58.343 36.000 0.00 0.00 0.00 1.40
1497 1566 5.507637 AGAGAGAGATCACAAATGCCAAAT 58.492 37.500 0.00 0.00 0.00 2.32
1498 1567 4.914983 AGAGAGAGATCACAAATGCCAAA 58.085 39.130 0.00 0.00 0.00 3.28
1499 1568 4.224594 AGAGAGAGAGATCACAAATGCCAA 59.775 41.667 0.00 0.00 0.00 4.52
1503 1572 6.544931 AGAGAGAGAGAGAGAGATCACAAATG 59.455 42.308 0.00 0.00 0.00 2.32
1505 1574 6.065976 AGAGAGAGAGAGAGAGATCACAAA 57.934 41.667 0.00 0.00 0.00 2.83
1506 1575 5.396772 GGAGAGAGAGAGAGAGAGATCACAA 60.397 48.000 0.00 0.00 0.00 3.33
1507 1576 4.101585 GGAGAGAGAGAGAGAGAGATCACA 59.898 50.000 0.00 0.00 0.00 3.58
1508 1577 4.503991 GGGAGAGAGAGAGAGAGAGATCAC 60.504 54.167 0.00 0.00 0.00 3.06
1509 1578 3.648067 GGGAGAGAGAGAGAGAGAGATCA 59.352 52.174 0.00 0.00 0.00 2.92
1510 1579 3.906846 AGGGAGAGAGAGAGAGAGAGATC 59.093 52.174 0.00 0.00 0.00 2.75
1511 1580 3.906846 GAGGGAGAGAGAGAGAGAGAGAT 59.093 52.174 0.00 0.00 0.00 2.75
1512 1581 3.051803 AGAGGGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1513 1582 3.312890 AGAGGGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1514 1583 3.051803 AGAGAGGGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1515 1584 3.312890 AGAGAGGGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1516 1585 3.051803 AGAGAGAGGGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1517 1586 3.312890 AGAGAGAGGGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1518 1587 3.051803 AGAGAGAGAGGGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1519 1588 3.312890 AGAGAGAGAGGGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1520 1589 3.051803 AGAGAGAGAGAGGGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1521 1590 3.312890 AGAGAGAGAGAGGGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1522 1591 3.051803 AGAGAGAGAGAGAGGGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1523 1592 3.312890 AGAGAGAGAGAGAGGGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1524 1593 3.051803 AGAGAGAGAGAGAGAGGGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1525 1594 3.312890 AGAGAGAGAGAGAGAGGGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1526 1595 3.051803 AGAGAGAGAGAGAGAGAGGGAGA 60.052 52.174 0.00 0.00 0.00 3.71
1527 1596 3.312890 AGAGAGAGAGAGAGAGAGGGAG 58.687 54.545 0.00 0.00 0.00 4.30
1530 1882 3.323403 GGAGAGAGAGAGAGAGAGAGAGG 59.677 56.522 0.00 0.00 0.00 3.69
1569 1923 5.591472 TCAAATCATGTGATCAACCTCCATC 59.409 40.000 0.00 0.00 32.75 3.51
1580 1934 4.333649 CGCTACAACCTCAAATCATGTGAT 59.666 41.667 0.00 0.00 36.07 3.06
1629 1983 7.329226 GCACTAGCATCACACAAAATTTGTATT 59.671 33.333 11.33 0.00 40.70 1.89
1640 1994 2.849942 ACAAAGCACTAGCATCACACA 58.150 42.857 0.00 0.00 45.49 3.72
1719 2114 3.686405 GCCCATGTTCCTCTGATCAATGA 60.686 47.826 0.00 0.00 0.00 2.57
1812 2209 6.017934 GTGATGTCTTTGTCTTTGCTTAGTCA 60.018 38.462 0.00 0.00 0.00 3.41
1814 2211 5.822519 TGTGATGTCTTTGTCTTTGCTTAGT 59.177 36.000 0.00 0.00 0.00 2.24
1828 2225 3.293311 GCATTGTTGCTGTGATGTCTT 57.707 42.857 0.00 0.00 45.77 3.01
1868 2265 1.536149 TTCGTTTCGTTTTTGCCGTG 58.464 45.000 0.00 0.00 0.00 4.94
1870 2267 3.827281 ATTTTCGTTTCGTTTTTGCCG 57.173 38.095 0.00 0.00 0.00 5.69
1966 2363 2.297033 TGAGTGAAAGCATTGCCCTTTC 59.703 45.455 13.58 13.58 45.19 2.62
1996 2393 4.122776 CAAGGAGGATGAATGGAGTAACG 58.877 47.826 0.00 0.00 0.00 3.18
2061 2464 6.729690 TCATGATTTGACCCAAATATTCCC 57.270 37.500 5.06 0.00 43.05 3.97
2148 2555 3.350833 AGGCAAAAGATGTCTCATCCAC 58.649 45.455 6.18 0.00 41.07 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.