Multiple sequence alignment - TraesCS3A01G303600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G303600 chr3A 100.000 5867 0 0 1 5867 538004372 538010238 0.000000e+00 10835
1 TraesCS3A01G303600 chr3B 93.882 5034 174 44 454 5398 539102486 539097498 0.000000e+00 7467
2 TraesCS3A01G303600 chr3D 94.687 4687 141 26 570 5215 412099378 412094759 0.000000e+00 7177
3 TraesCS3A01G303600 chr3D 78.742 461 77 16 1 443 438055576 438055119 7.440000e-74 289
4 TraesCS3A01G303600 chr3D 81.481 324 27 23 5554 5853 412094601 412094287 9.830000e-58 235
5 TraesCS3A01G303600 chr3D 100.000 64 0 0 514 577 412099464 412099401 1.030000e-22 119
6 TraesCS3A01G303600 chr1D 84.703 438 59 4 1 430 378291105 378290668 1.170000e-116 431
7 TraesCS3A01G303600 chr1D 80.837 454 67 11 1 443 480866637 480866193 7.280000e-89 339
8 TraesCS3A01G303600 chr5B 83.628 452 56 9 1 437 495003997 495004445 5.470000e-110 409
9 TraesCS3A01G303600 chr2D 81.957 460 64 10 1 443 78047099 78047556 7.180000e-99 372
10 TraesCS3A01G303600 chr6A 82.000 450 64 11 1 437 578555353 578555798 3.340000e-97 366
11 TraesCS3A01G303600 chr4B 81.758 455 61 14 4 443 672315997 672315550 1.550000e-95 361
12 TraesCS3A01G303600 chr2A 81.457 453 63 9 1 443 617957056 617956615 9.350000e-93 351
13 TraesCS3A01G303600 chr4D 79.610 461 72 13 1 444 8873994 8874449 1.590000e-80 311
14 TraesCS3A01G303600 chrUn 82.578 287 16 14 5249 5535 325728443 325728695 7.650000e-54 222
15 TraesCS3A01G303600 chrUn 82.578 287 16 14 5252 5538 334360596 334360344 7.650000e-54 222
16 TraesCS3A01G303600 chr2B 81.533 287 18 15 5252 5538 368310691 368310440 2.770000e-48 204
17 TraesCS3A01G303600 chr2B 95.041 121 6 0 5415 5535 175746616 175746736 2.160000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G303600 chr3A 538004372 538010238 5866 False 10835.000000 10835 100.000 1 5867 1 chr3A.!!$F1 5866
1 TraesCS3A01G303600 chr3B 539097498 539102486 4988 True 7467.000000 7467 93.882 454 5398 1 chr3B.!!$R1 4944
2 TraesCS3A01G303600 chr3D 412094287 412099464 5177 True 2510.333333 7177 92.056 514 5853 3 chr3D.!!$R2 5339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 227 0.030101 CGTTTTGTGGCCGTGATGTT 59.970 50.000 0.00 0.00 0.00 2.71 F
437 438 0.033781 CCAAACTGGACGGTCCGTTA 59.966 55.000 26.09 10.14 40.96 3.18 F
448 449 0.036671 GGTCCGTTAGGGGTGAGTTG 60.037 60.000 0.00 0.00 38.33 3.16 F
451 452 0.036671 CCGTTAGGGGTGAGTTGGTC 60.037 60.000 0.00 0.00 0.00 4.02 F
747 787 0.320771 GGCGAGGAGTCAAGCTGAAA 60.321 55.000 0.00 0.00 0.00 2.69 F
875 920 0.688087 ATCTCCTTCCCCGACTGACC 60.688 60.000 0.00 0.00 0.00 4.02 F
1723 1781 1.003464 GCCCATCTGCCCACAATTTTT 59.997 47.619 0.00 0.00 0.00 1.94 F
2138 2202 1.526225 GCCTTTGGTAGATCGGCCC 60.526 63.158 0.00 0.00 34.75 5.80 F
3654 3726 1.072015 AGAAGTGCAGAAAGAGCAGCT 59.928 47.619 0.00 0.00 43.63 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 1782 1.216064 AGCAAGGATCAGGTGGCATA 58.784 50.000 0.00 0.0 0.00 3.14 R
1790 1848 1.272807 TTGACTACGGGAAAGGGGAG 58.727 55.000 0.00 0.0 0.00 4.30 R
2138 2202 1.827969 AGCACCTCCACTTAGCAGTAG 59.172 52.381 0.00 0.0 0.00 2.57 R
2173 2237 2.482839 GGTTTTCACAACACCCACATGG 60.483 50.000 0.00 0.0 41.37 3.66 R
2731 2795 3.173953 TCCTTCAATTGCTTCATGGGT 57.826 42.857 0.00 0.0 0.00 4.51 R
2917 2981 5.412286 TCACATCGAAATTGCTCTGAAATCA 59.588 36.000 0.00 0.0 0.00 2.57 R
3344 3416 0.168788 CAAGTGTGGCTGGCATAACG 59.831 55.000 7.33 0.0 0.00 3.18 R
3770 3842 0.249398 ATGGCTCGTAACAGTGGGAC 59.751 55.000 0.00 0.0 0.00 4.46 R
5529 5642 0.036164 AGCAACGATACTGGTGCCAA 59.964 50.000 0.00 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.404098 CCCCCGTGTACCAGGCAC 62.404 72.222 0.00 0.00 0.00 5.01
38 39 4.404098 CCCCGTGTACCAGGCACC 62.404 72.222 0.00 0.00 33.61 5.01
39 40 4.752879 CCCGTGTACCAGGCACCG 62.753 72.222 0.00 0.00 33.61 4.94
52 53 3.402681 CACCGCCATCCCACCTCT 61.403 66.667 0.00 0.00 0.00 3.69
53 54 3.402681 ACCGCCATCCCACCTCTG 61.403 66.667 0.00 0.00 0.00 3.35
54 55 4.181010 CCGCCATCCCACCTCTGG 62.181 72.222 0.00 0.00 37.29 3.86
55 56 3.083349 CGCCATCCCACCTCTGGA 61.083 66.667 0.00 0.00 40.55 3.86
56 57 2.592308 GCCATCCCACCTCTGGAC 59.408 66.667 0.00 0.00 40.55 4.02
57 58 2.903357 CCATCCCACCTCTGGACG 59.097 66.667 0.00 0.00 40.55 4.79
58 59 2.735772 CCATCCCACCTCTGGACGG 61.736 68.421 0.00 0.00 40.55 4.79
59 60 3.083997 ATCCCACCTCTGGACGGC 61.084 66.667 0.00 0.00 40.55 5.68
78 79 3.885521 CCGGCCTACGTCGACCTC 61.886 72.222 10.58 0.00 42.24 3.85
79 80 4.233635 CGGCCTACGTCGACCTCG 62.234 72.222 10.58 0.40 41.45 4.63
80 81 3.130160 GGCCTACGTCGACCTCGT 61.130 66.667 10.58 7.42 43.86 4.18
81 82 2.402787 GCCTACGTCGACCTCGTC 59.597 66.667 10.58 0.00 41.72 4.20
82 83 2.393768 GCCTACGTCGACCTCGTCA 61.394 63.158 10.58 0.00 41.72 4.35
83 84 1.915614 GCCTACGTCGACCTCGTCAA 61.916 60.000 10.58 0.00 41.72 3.18
84 85 0.179205 CCTACGTCGACCTCGTCAAC 60.179 60.000 10.58 0.00 41.72 3.18
85 86 0.517946 CTACGTCGACCTCGTCAACG 60.518 60.000 10.58 3.86 41.01 4.10
87 88 4.127726 GTCGACCTCGTCAACGAC 57.872 61.111 3.51 0.00 44.22 4.34
97 98 3.301956 GTCAACGACGACGAAAACG 57.698 52.632 15.32 4.49 42.66 3.60
98 99 0.112008 GTCAACGACGACGAAAACGG 60.112 55.000 15.32 0.00 42.66 4.44
99 100 1.435966 CAACGACGACGAAAACGGC 60.436 57.895 15.32 0.00 42.66 5.68
102 103 4.419957 GACGACGAAAACGGCGGC 62.420 66.667 20.89 15.31 45.78 6.53
105 106 4.379143 GACGAAAACGGCGGCCAC 62.379 66.667 20.71 0.00 0.00 5.01
106 107 4.922026 ACGAAAACGGCGGCCACT 62.922 61.111 20.71 1.30 0.00 4.00
107 108 4.383602 CGAAAACGGCGGCCACTG 62.384 66.667 20.71 0.00 0.00 3.66
108 109 2.975799 GAAAACGGCGGCCACTGA 60.976 61.111 20.71 0.00 0.00 3.41
109 110 2.966309 GAAAACGGCGGCCACTGAG 61.966 63.158 20.71 4.43 0.00 3.35
110 111 3.469863 AAAACGGCGGCCACTGAGA 62.470 57.895 20.71 0.00 0.00 3.27
111 112 2.951475 AAAACGGCGGCCACTGAGAA 62.951 55.000 20.71 0.00 0.00 2.87
112 113 3.883744 AACGGCGGCCACTGAGAAG 62.884 63.158 20.71 2.03 0.00 2.85
113 114 4.069232 CGGCGGCCACTGAGAAGA 62.069 66.667 20.71 0.00 0.00 2.87
114 115 2.435059 GGCGGCCACTGAGAAGAC 60.435 66.667 15.62 0.00 0.00 3.01
115 116 2.811317 GCGGCCACTGAGAAGACG 60.811 66.667 2.24 0.00 0.00 4.18
116 117 2.962569 CGGCCACTGAGAAGACGA 59.037 61.111 2.24 0.00 0.00 4.20
117 118 1.444553 CGGCCACTGAGAAGACGAC 60.445 63.158 2.24 0.00 0.00 4.34
118 119 1.079750 GGCCACTGAGAAGACGACC 60.080 63.158 0.00 0.00 0.00 4.79
119 120 1.666011 GCCACTGAGAAGACGACCA 59.334 57.895 0.00 0.00 0.00 4.02
120 121 0.667792 GCCACTGAGAAGACGACCAC 60.668 60.000 0.00 0.00 0.00 4.16
121 122 0.387367 CCACTGAGAAGACGACCACG 60.387 60.000 0.00 0.00 45.75 4.94
122 123 0.591659 CACTGAGAAGACGACCACGA 59.408 55.000 0.00 0.00 42.66 4.35
123 124 0.592148 ACTGAGAAGACGACCACGAC 59.408 55.000 0.00 0.00 42.66 4.34
124 125 0.109689 CTGAGAAGACGACCACGACC 60.110 60.000 0.00 0.00 42.66 4.79
125 126 0.820482 TGAGAAGACGACCACGACCA 60.820 55.000 0.00 0.00 42.66 4.02
126 127 0.386985 GAGAAGACGACCACGACCAC 60.387 60.000 0.00 0.00 42.66 4.16
127 128 1.728426 GAAGACGACCACGACCACG 60.728 63.158 0.00 0.00 42.66 4.94
128 129 3.203546 AAGACGACCACGACCACGG 62.204 63.158 0.00 0.00 44.46 4.94
131 132 4.735132 CGACCACGACCACGGCAT 62.735 66.667 0.00 0.00 44.46 4.40
132 133 2.813908 GACCACGACCACGGCATC 60.814 66.667 0.00 0.00 44.46 3.91
133 134 4.735132 ACCACGACCACGGCATCG 62.735 66.667 0.00 3.33 44.46 3.84
134 135 4.429212 CCACGACCACGGCATCGA 62.429 66.667 10.81 0.00 44.46 3.59
135 136 3.179265 CACGACCACGGCATCGAC 61.179 66.667 10.81 0.00 44.46 4.20
136 137 4.771356 ACGACCACGGCATCGACG 62.771 66.667 10.81 0.00 44.46 5.12
144 145 4.899239 GGCATCGACGGGCAGGAG 62.899 72.222 13.07 0.00 0.00 3.69
163 164 2.874315 GCGCGGGCGACAAATTTC 60.874 61.111 18.30 0.00 42.83 2.17
164 165 2.867472 CGCGGGCGACAAATTTCT 59.133 55.556 7.38 0.00 42.83 2.52
165 166 1.209127 CGCGGGCGACAAATTTCTT 59.791 52.632 7.38 0.00 42.83 2.52
166 167 0.386731 CGCGGGCGACAAATTTCTTT 60.387 50.000 7.38 0.00 42.83 2.52
167 168 1.778334 GCGGGCGACAAATTTCTTTT 58.222 45.000 0.00 0.00 0.00 2.27
168 169 2.131972 GCGGGCGACAAATTTCTTTTT 58.868 42.857 0.00 0.00 0.00 1.94
204 205 9.559732 TTATGTCTATGTGAATTATGGAACTGG 57.440 33.333 0.00 0.00 0.00 4.00
205 206 6.356556 TGTCTATGTGAATTATGGAACTGGG 58.643 40.000 0.00 0.00 0.00 4.45
206 207 6.069673 TGTCTATGTGAATTATGGAACTGGGT 60.070 38.462 0.00 0.00 0.00 4.51
207 208 6.483640 GTCTATGTGAATTATGGAACTGGGTC 59.516 42.308 0.00 0.00 0.00 4.46
208 209 3.605634 TGTGAATTATGGAACTGGGTCG 58.394 45.455 0.00 0.00 0.00 4.79
209 210 3.008594 TGTGAATTATGGAACTGGGTCGT 59.991 43.478 0.00 0.00 0.00 4.34
210 211 4.007659 GTGAATTATGGAACTGGGTCGTT 58.992 43.478 0.00 0.00 0.00 3.85
211 212 4.457949 GTGAATTATGGAACTGGGTCGTTT 59.542 41.667 0.00 0.00 0.00 3.60
212 213 5.048294 GTGAATTATGGAACTGGGTCGTTTT 60.048 40.000 0.00 0.00 0.00 2.43
213 214 5.048364 TGAATTATGGAACTGGGTCGTTTTG 60.048 40.000 0.00 0.00 0.00 2.44
214 215 2.358322 ATGGAACTGGGTCGTTTTGT 57.642 45.000 0.00 0.00 0.00 2.83
215 216 1.384525 TGGAACTGGGTCGTTTTGTG 58.615 50.000 0.00 0.00 0.00 3.33
216 217 0.666374 GGAACTGGGTCGTTTTGTGG 59.334 55.000 0.00 0.00 0.00 4.17
217 218 0.030235 GAACTGGGTCGTTTTGTGGC 59.970 55.000 0.00 0.00 0.00 5.01
218 219 1.388837 AACTGGGTCGTTTTGTGGCC 61.389 55.000 0.00 0.00 0.00 5.36
219 220 2.902846 TGGGTCGTTTTGTGGCCG 60.903 61.111 0.00 0.00 0.00 6.13
220 221 2.903350 GGGTCGTTTTGTGGCCGT 60.903 61.111 0.00 0.00 0.00 5.68
221 222 2.330041 GGTCGTTTTGTGGCCGTG 59.670 61.111 0.00 0.00 0.00 4.94
222 223 2.181521 GGTCGTTTTGTGGCCGTGA 61.182 57.895 0.00 0.00 0.00 4.35
223 224 1.512156 GGTCGTTTTGTGGCCGTGAT 61.512 55.000 0.00 0.00 0.00 3.06
224 225 0.385473 GTCGTTTTGTGGCCGTGATG 60.385 55.000 0.00 0.00 0.00 3.07
225 226 0.816018 TCGTTTTGTGGCCGTGATGT 60.816 50.000 0.00 0.00 0.00 3.06
226 227 0.030101 CGTTTTGTGGCCGTGATGTT 59.970 50.000 0.00 0.00 0.00 2.71
227 228 1.535015 CGTTTTGTGGCCGTGATGTTT 60.535 47.619 0.00 0.00 0.00 2.83
228 229 2.287069 CGTTTTGTGGCCGTGATGTTTA 60.287 45.455 0.00 0.00 0.00 2.01
229 230 3.707793 GTTTTGTGGCCGTGATGTTTAA 58.292 40.909 0.00 0.00 0.00 1.52
230 231 4.303282 GTTTTGTGGCCGTGATGTTTAAT 58.697 39.130 0.00 0.00 0.00 1.40
231 232 4.592485 TTTGTGGCCGTGATGTTTAATT 57.408 36.364 0.00 0.00 0.00 1.40
232 233 5.707242 TTTGTGGCCGTGATGTTTAATTA 57.293 34.783 0.00 0.00 0.00 1.40
233 234 5.906113 TTGTGGCCGTGATGTTTAATTAT 57.094 34.783 0.00 0.00 0.00 1.28
234 235 5.906113 TGTGGCCGTGATGTTTAATTATT 57.094 34.783 0.00 0.00 0.00 1.40
235 236 5.885881 TGTGGCCGTGATGTTTAATTATTC 58.114 37.500 0.00 0.00 0.00 1.75
236 237 5.650266 TGTGGCCGTGATGTTTAATTATTCT 59.350 36.000 0.00 0.00 0.00 2.40
237 238 6.151985 TGTGGCCGTGATGTTTAATTATTCTT 59.848 34.615 0.00 0.00 0.00 2.52
238 239 7.033185 GTGGCCGTGATGTTTAATTATTCTTT 58.967 34.615 0.00 0.00 0.00 2.52
239 240 8.185505 GTGGCCGTGATGTTTAATTATTCTTTA 58.814 33.333 0.00 0.00 0.00 1.85
240 241 8.908903 TGGCCGTGATGTTTAATTATTCTTTAT 58.091 29.630 0.00 0.00 0.00 1.40
332 333 8.677148 TCTATCCCAGACATAATTTAAAGTGC 57.323 34.615 0.00 0.00 0.00 4.40
333 334 5.811399 TCCCAGACATAATTTAAAGTGCG 57.189 39.130 0.00 0.00 0.00 5.34
334 335 4.638421 TCCCAGACATAATTTAAAGTGCGG 59.362 41.667 0.00 0.00 0.00 5.69
335 336 4.351192 CCAGACATAATTTAAAGTGCGGC 58.649 43.478 0.00 0.00 0.00 6.53
336 337 4.351192 CAGACATAATTTAAAGTGCGGCC 58.649 43.478 0.00 0.00 0.00 6.13
337 338 4.013728 AGACATAATTTAAAGTGCGGCCA 58.986 39.130 2.24 0.00 0.00 5.36
338 339 4.102649 GACATAATTTAAAGTGCGGCCAC 58.897 43.478 2.24 0.00 42.39 5.01
339 340 2.904011 TAATTTAAAGTGCGGCCACG 57.096 45.000 2.24 0.00 46.62 4.94
340 341 0.955905 AATTTAAAGTGCGGCCACGT 59.044 45.000 2.24 0.00 46.62 4.49
341 342 0.239879 ATTTAAAGTGCGGCCACGTG 59.760 50.000 9.08 9.08 46.62 4.49
342 343 1.096386 TTTAAAGTGCGGCCACGTGT 61.096 50.000 15.65 0.00 46.62 4.49
343 344 1.096386 TTAAAGTGCGGCCACGTGTT 61.096 50.000 15.65 1.79 46.62 3.32
344 345 1.777030 TAAAGTGCGGCCACGTGTTG 61.777 55.000 15.65 4.66 46.62 3.33
353 354 2.555782 CACGTGTTGGATGCACCG 59.444 61.111 7.58 0.00 42.61 4.94
354 355 1.958715 CACGTGTTGGATGCACCGA 60.959 57.895 7.58 0.00 42.61 4.69
358 359 2.870372 GTTGGATGCACCGACTGC 59.130 61.111 14.88 0.00 46.67 4.40
359 360 2.359850 TTGGATGCACCGACTGCC 60.360 61.111 0.00 0.00 46.51 4.85
360 361 3.918253 TTGGATGCACCGACTGCCC 62.918 63.158 0.00 0.00 46.51 5.36
361 362 4.408821 GGATGCACCGACTGCCCA 62.409 66.667 0.00 0.00 46.51 5.36
362 363 2.359850 GATGCACCGACTGCCCAA 60.360 61.111 0.00 0.00 46.51 4.12
363 364 1.750399 GATGCACCGACTGCCCAAT 60.750 57.895 0.00 0.00 46.51 3.16
364 365 0.463654 GATGCACCGACTGCCCAATA 60.464 55.000 0.00 0.00 46.51 1.90
365 366 0.464373 ATGCACCGACTGCCCAATAG 60.464 55.000 0.00 0.00 46.51 1.73
366 367 2.472909 GCACCGACTGCCCAATAGC 61.473 63.158 0.00 0.00 40.42 2.97
367 368 1.819632 CACCGACTGCCCAATAGCC 60.820 63.158 0.00 0.00 0.00 3.93
368 369 2.203209 CCGACTGCCCAATAGCCC 60.203 66.667 0.00 0.00 0.00 5.19
369 370 2.203209 CGACTGCCCAATAGCCCC 60.203 66.667 0.00 0.00 0.00 5.80
370 371 3.006677 GACTGCCCAATAGCCCCA 58.993 61.111 0.00 0.00 0.00 4.96
371 372 1.306296 GACTGCCCAATAGCCCCAA 59.694 57.895 0.00 0.00 0.00 4.12
372 373 0.324275 GACTGCCCAATAGCCCCAAA 60.324 55.000 0.00 0.00 0.00 3.28
373 374 0.614697 ACTGCCCAATAGCCCCAAAC 60.615 55.000 0.00 0.00 0.00 2.93
374 375 1.666209 CTGCCCAATAGCCCCAAACG 61.666 60.000 0.00 0.00 0.00 3.60
375 376 2.423064 GCCCAATAGCCCCAAACGG 61.423 63.158 0.00 0.00 0.00 4.44
376 377 1.304952 CCCAATAGCCCCAAACGGA 59.695 57.895 0.00 0.00 0.00 4.69
377 378 1.035385 CCCAATAGCCCCAAACGGAC 61.035 60.000 0.00 0.00 0.00 4.79
378 379 0.322997 CCAATAGCCCCAAACGGACA 60.323 55.000 0.00 0.00 0.00 4.02
379 380 1.684869 CCAATAGCCCCAAACGGACAT 60.685 52.381 0.00 0.00 0.00 3.06
380 381 1.405105 CAATAGCCCCAAACGGACATG 59.595 52.381 0.00 0.00 0.00 3.21
381 382 0.916086 ATAGCCCCAAACGGACATGA 59.084 50.000 0.00 0.00 0.00 3.07
382 383 0.251916 TAGCCCCAAACGGACATGAG 59.748 55.000 0.00 0.00 0.00 2.90
383 384 2.700773 GCCCCAAACGGACATGAGC 61.701 63.158 0.00 0.00 0.00 4.26
384 385 2.398554 CCCCAAACGGACATGAGCG 61.399 63.158 0.00 0.00 0.00 5.03
385 386 2.398554 CCCAAACGGACATGAGCGG 61.399 63.158 0.00 0.00 0.00 5.52
386 387 2.480555 CAAACGGACATGAGCGGC 59.519 61.111 0.00 0.00 0.00 6.53
387 388 2.746277 AAACGGACATGAGCGGCC 60.746 61.111 0.00 0.00 0.00 6.13
388 389 3.254024 AAACGGACATGAGCGGCCT 62.254 57.895 0.00 0.00 0.00 5.19
389 390 3.665675 AACGGACATGAGCGGCCTC 62.666 63.158 0.00 0.00 38.62 4.70
402 403 4.360643 GCCTCATTGCCATCCCAA 57.639 55.556 0.00 0.00 0.00 4.12
403 404 2.594342 GCCTCATTGCCATCCCAAA 58.406 52.632 0.00 0.00 0.00 3.28
404 405 0.176449 GCCTCATTGCCATCCCAAAC 59.824 55.000 0.00 0.00 0.00 2.93
405 406 0.457035 CCTCATTGCCATCCCAAACG 59.543 55.000 0.00 0.00 0.00 3.60
406 407 1.462616 CTCATTGCCATCCCAAACGA 58.537 50.000 0.00 0.00 0.00 3.85
407 408 1.818060 CTCATTGCCATCCCAAACGAA 59.182 47.619 0.00 0.00 0.00 3.85
408 409 1.543802 TCATTGCCATCCCAAACGAAC 59.456 47.619 0.00 0.00 0.00 3.95
409 410 0.525761 ATTGCCATCCCAAACGAACG 59.474 50.000 0.00 0.00 0.00 3.95
410 411 0.535328 TTGCCATCCCAAACGAACGA 60.535 50.000 0.14 0.00 0.00 3.85
411 412 0.535328 TGCCATCCCAAACGAACGAA 60.535 50.000 0.14 0.00 0.00 3.85
412 413 0.594110 GCCATCCCAAACGAACGAAA 59.406 50.000 0.14 0.00 0.00 3.46
413 414 1.001158 GCCATCCCAAACGAACGAAAA 60.001 47.619 0.14 0.00 0.00 2.29
414 415 2.657184 CCATCCCAAACGAACGAAAAC 58.343 47.619 0.14 0.00 0.00 2.43
415 416 2.033550 CCATCCCAAACGAACGAAAACA 59.966 45.455 0.14 0.00 0.00 2.83
416 417 3.296628 CATCCCAAACGAACGAAAACAG 58.703 45.455 0.14 0.00 0.00 3.16
417 418 1.671845 TCCCAAACGAACGAAAACAGG 59.328 47.619 0.14 0.00 0.00 4.00
418 419 1.472990 CCAAACGAACGAAAACAGGC 58.527 50.000 0.14 0.00 0.00 4.85
419 420 1.472990 CAAACGAACGAAAACAGGCC 58.527 50.000 0.00 0.00 0.00 5.19
420 421 1.096416 AAACGAACGAAAACAGGCCA 58.904 45.000 5.01 0.00 0.00 5.36
421 422 1.096416 AACGAACGAAAACAGGCCAA 58.904 45.000 5.01 0.00 0.00 4.52
422 423 1.096416 ACGAACGAAAACAGGCCAAA 58.904 45.000 5.01 0.00 0.00 3.28
423 424 1.202211 ACGAACGAAAACAGGCCAAAC 60.202 47.619 5.01 0.00 0.00 2.93
424 425 1.064952 CGAACGAAAACAGGCCAAACT 59.935 47.619 5.01 0.00 0.00 2.66
425 426 2.459934 GAACGAAAACAGGCCAAACTG 58.540 47.619 5.01 0.00 44.03 3.16
426 427 0.744281 ACGAAAACAGGCCAAACTGG 59.256 50.000 5.01 0.00 42.75 4.00
427 428 1.028905 CGAAAACAGGCCAAACTGGA 58.971 50.000 5.01 0.00 40.96 3.86
433 434 2.671963 GGCCAAACTGGACGGTCC 60.672 66.667 20.36 20.36 40.96 4.46
434 435 3.047877 GCCAAACTGGACGGTCCG 61.048 66.667 21.52 17.64 40.96 4.79
435 436 2.424302 CCAAACTGGACGGTCCGT 59.576 61.111 18.94 18.94 40.96 4.69
436 437 1.227734 CCAAACTGGACGGTCCGTT 60.228 57.895 19.95 22.23 40.96 4.44
437 438 0.033781 CCAAACTGGACGGTCCGTTA 59.966 55.000 26.09 10.14 40.96 3.18
438 439 1.425412 CAAACTGGACGGTCCGTTAG 58.575 55.000 26.09 20.81 41.37 2.34
439 440 0.319405 AAACTGGACGGTCCGTTAGG 59.681 55.000 26.09 13.30 41.37 2.69
440 441 1.538687 AACTGGACGGTCCGTTAGGG 61.539 60.000 25.25 11.57 41.37 3.53
441 442 2.681064 TGGACGGTCCGTTAGGGG 60.681 66.667 19.95 0.00 41.37 4.79
442 443 2.681421 GGACGGTCCGTTAGGGGT 60.681 66.667 19.95 0.00 41.37 4.95
443 444 2.575461 GACGGTCCGTTAGGGGTG 59.425 66.667 19.95 0.00 41.37 4.61
444 445 1.978617 GACGGTCCGTTAGGGGTGA 60.979 63.158 19.95 0.00 41.37 4.02
445 446 1.941999 GACGGTCCGTTAGGGGTGAG 61.942 65.000 19.95 0.00 41.37 3.51
446 447 1.980772 CGGTCCGTTAGGGGTGAGT 60.981 63.158 2.08 0.00 38.33 3.41
447 448 1.538687 CGGTCCGTTAGGGGTGAGTT 61.539 60.000 2.08 0.00 38.33 3.01
448 449 0.036671 GGTCCGTTAGGGGTGAGTTG 60.037 60.000 0.00 0.00 38.33 3.16
449 450 0.036671 GTCCGTTAGGGGTGAGTTGG 60.037 60.000 0.00 0.00 38.33 3.77
450 451 0.472352 TCCGTTAGGGGTGAGTTGGT 60.472 55.000 0.00 0.00 38.33 3.67
451 452 0.036671 CCGTTAGGGGTGAGTTGGTC 60.037 60.000 0.00 0.00 0.00 4.02
452 453 0.974383 CGTTAGGGGTGAGTTGGTCT 59.026 55.000 0.00 0.00 0.00 3.85
465 466 4.104102 TGAGTTGGTCTTAATGTCACCCTT 59.896 41.667 0.00 0.00 0.00 3.95
468 469 2.375174 TGGTCTTAATGTCACCCTTGCT 59.625 45.455 0.00 0.00 0.00 3.91
597 629 3.777925 CAAACTCGGCCGCTCGTG 61.778 66.667 23.51 12.33 0.00 4.35
743 783 2.574955 AACGGCGAGGAGTCAAGCT 61.575 57.895 16.62 0.00 0.00 3.74
744 784 2.507992 CGGCGAGGAGTCAAGCTG 60.508 66.667 0.00 0.00 0.00 4.24
745 785 2.973899 GGCGAGGAGTCAAGCTGA 59.026 61.111 0.00 0.00 0.00 4.26
746 786 1.293498 GGCGAGGAGTCAAGCTGAA 59.707 57.895 0.00 0.00 0.00 3.02
747 787 0.320771 GGCGAGGAGTCAAGCTGAAA 60.321 55.000 0.00 0.00 0.00 2.69
840 880 1.421382 TAGTTTGGCTTGTACGTCGC 58.579 50.000 0.00 0.00 0.00 5.19
843 883 3.851845 TTGGCTTGTACGTCGCGCT 62.852 57.895 5.56 0.00 0.00 5.92
871 916 1.413227 CCCTTATCTCCTTCCCCGACT 60.413 57.143 0.00 0.00 0.00 4.18
872 917 1.689273 CCTTATCTCCTTCCCCGACTG 59.311 57.143 0.00 0.00 0.00 3.51
873 918 2.667470 CTTATCTCCTTCCCCGACTGA 58.333 52.381 0.00 0.00 0.00 3.41
874 919 2.068834 TATCTCCTTCCCCGACTGAC 57.931 55.000 0.00 0.00 0.00 3.51
875 920 0.688087 ATCTCCTTCCCCGACTGACC 60.688 60.000 0.00 0.00 0.00 4.02
963 1009 1.936631 ACTCCTCCTCCTTCCTCTGAT 59.063 52.381 0.00 0.00 0.00 2.90
995 1041 1.648302 CCCATTCCCAGATCCCAGCA 61.648 60.000 0.00 0.00 0.00 4.41
1723 1781 1.003464 GCCCATCTGCCCACAATTTTT 59.997 47.619 0.00 0.00 0.00 1.94
1765 1823 5.277058 GCTTTCGCTTTGATCATAGTACTGG 60.277 44.000 13.74 0.00 0.00 4.00
1790 1848 4.873827 TGTTGCCGGAGTATTAGAATTGTC 59.126 41.667 5.05 0.00 0.00 3.18
1832 1890 2.808543 GGACTCGAAATTTGCAGTGTCT 59.191 45.455 0.00 0.00 0.00 3.41
1852 1910 6.263617 GTGTCTGTAATTCCAGTTGGGTAAAA 59.736 38.462 0.00 0.00 38.11 1.52
1868 1926 6.137559 TGGGTAAAACTTTAACTTGGTCCAT 58.862 36.000 0.00 0.00 31.13 3.41
2138 2202 1.526225 GCCTTTGGTAGATCGGCCC 60.526 63.158 0.00 0.00 34.75 5.80
2173 2237 2.560105 AGGTGCTTCATTTGGCTCTTTC 59.440 45.455 0.00 0.00 0.00 2.62
2515 2579 1.962807 CCAAGAAAACATGAGCCACCA 59.037 47.619 0.00 0.00 0.00 4.17
2554 2618 5.169992 TGACATCACCTCATGTTCTCATT 57.830 39.130 0.00 0.00 37.11 2.57
2731 2795 6.418101 AGATGGCAGCTTAGAAAGTGATTTA 58.582 36.000 0.00 0.00 0.00 1.40
2995 3059 9.305925 GGATGTTTCCTTTGCTTATATTTCTTG 57.694 33.333 0.00 0.00 39.14 3.02
3081 3153 2.754552 GCTCACCAAGGCATATTTGACA 59.245 45.455 0.00 0.00 30.96 3.58
3082 3154 3.181493 GCTCACCAAGGCATATTTGACAG 60.181 47.826 0.00 0.00 30.96 3.51
3344 3416 3.071874 TGGGAAGGTGATGTGACAATC 57.928 47.619 0.00 0.00 0.00 2.67
3413 3485 4.566545 TCTTTCGTGTGCATGTCAAATT 57.433 36.364 0.00 0.00 0.00 1.82
3437 3509 7.905604 TTTCACCACATTAATCAGTAGTCTG 57.094 36.000 0.00 0.00 42.54 3.51
3457 3529 8.423906 AGTCTGACTAATGTTCTTTTCCTCTA 57.576 34.615 8.91 0.00 0.00 2.43
3654 3726 1.072015 AGAAGTGCAGAAAGAGCAGCT 59.928 47.619 0.00 0.00 43.63 4.24
3766 3838 3.026694 TCTCTCGATGAGGAAATGCTCA 58.973 45.455 7.10 7.10 42.86 4.26
3770 3842 3.200483 TCGATGAGGAAATGCTCACATG 58.800 45.455 6.78 0.00 36.36 3.21
4005 4077 2.299867 CAGAACAATTTCACCAAGGGGG 59.700 50.000 0.00 0.00 44.81 5.40
4008 4080 0.897621 CAATTTCACCAAGGGGGAGC 59.102 55.000 0.00 0.00 36.04 4.70
4023 4095 2.421529 GGGGAGCGAAGGTGATATTGTT 60.422 50.000 0.00 0.00 39.88 2.83
4094 4166 0.538287 GATAACCATCCAGGGCCTGC 60.538 60.000 28.51 7.15 43.89 4.85
4212 4284 3.730761 GGTGACTTGCTGCAGCCG 61.731 66.667 34.64 26.53 41.18 5.52
4258 4330 5.909621 ATTCAATGTTGTGAGAAGGGATG 57.090 39.130 0.00 0.00 0.00 3.51
4263 4335 2.373169 TGTTGTGAGAAGGGATGCTCTT 59.627 45.455 0.00 0.00 32.44 2.85
4359 4431 2.614057 CCTTTATGGTGCTTCGGATGAC 59.386 50.000 0.00 0.00 0.00 3.06
4386 4458 1.873591 GACAACGTGGAACTGAATGCT 59.126 47.619 0.00 0.00 31.75 3.79
4391 4463 2.289631 ACGTGGAACTGAATGCTGATCA 60.290 45.455 0.00 0.00 31.75 2.92
4476 4548 3.657398 TCCATGGATTGTCAAGCTGAT 57.343 42.857 11.44 0.00 0.00 2.90
4516 4588 5.009510 CGATCAGAAGCTCCATCTCTCTTTA 59.990 44.000 0.00 0.00 0.00 1.85
4601 4673 6.098124 CCTTCTTCAGACATAAGACTGGAGAT 59.902 42.308 8.84 0.00 46.60 2.75
4644 4716 1.742268 GAGAATTCAGCTGCTGGGAAC 59.258 52.381 27.79 16.92 31.51 3.62
4655 4727 0.804989 GCTGGGAACGATGAAGTTGG 59.195 55.000 0.00 0.00 34.00 3.77
4725 4797 5.474532 TGAAAATAGACAGCAGCATCAAGTT 59.525 36.000 0.00 0.00 0.00 2.66
4749 4821 2.030027 TGGGATCTGTGAACTCCTGT 57.970 50.000 0.00 0.00 0.00 4.00
4776 4848 7.605691 AGTGTTTCAGTTTCAGAAGATGATAGG 59.394 37.037 1.36 0.00 37.89 2.57
4978 5050 3.059461 TCGGCAATTTAAACTCGTGTCAC 60.059 43.478 0.00 0.00 0.00 3.67
5059 5138 8.348507 CCCTAATGAAGCACTAGAATGAATTTC 58.651 37.037 0.00 0.00 34.31 2.17
5065 5146 6.801539 AGCACTAGAATGAATTTCGTTTCA 57.198 33.333 5.37 1.82 39.46 2.69
5079 5160 8.547091 AATTTCGTTTCAAACTCGCATATATG 57.453 30.769 8.45 8.45 0.00 1.78
5113 5201 8.413309 TCCTCTGTTTCTGAAATTGATGAAAT 57.587 30.769 6.06 0.00 32.22 2.17
5145 5233 3.492102 TTTACTGAAACTGCTCAGGCT 57.508 42.857 10.91 0.00 46.02 4.58
5146 5234 2.462456 TACTGAAACTGCTCAGGCTG 57.538 50.000 8.58 8.58 46.02 4.85
5156 5244 3.602513 CTCAGGCTGCGGCTCTGTT 62.603 63.158 25.67 4.99 35.88 3.16
5162 5250 3.573772 CTGCGGCTCTGTTCGGACA 62.574 63.158 0.00 0.00 0.00 4.02
5215 5303 2.194271 GATTTGGACGCTTCTACTCCG 58.806 52.381 0.00 0.00 0.00 4.63
5217 5305 0.963962 TTGGACGCTTCTACTCCGTT 59.036 50.000 0.00 0.00 35.06 4.44
5218 5306 0.242825 TGGACGCTTCTACTCCGTTG 59.757 55.000 0.00 0.00 35.06 4.10
5219 5307 0.524862 GGACGCTTCTACTCCGTTGA 59.475 55.000 0.00 0.00 35.06 3.18
5220 5308 1.134560 GGACGCTTCTACTCCGTTGAT 59.865 52.381 0.00 0.00 35.06 2.57
5221 5309 2.452105 GACGCTTCTACTCCGTTGATC 58.548 52.381 0.00 0.00 35.06 2.92
5224 5312 2.197577 GCTTCTACTCCGTTGATCAGC 58.802 52.381 0.00 0.00 0.00 4.26
5225 5313 2.417379 GCTTCTACTCCGTTGATCAGCA 60.417 50.000 10.36 0.00 0.00 4.41
5226 5314 3.739519 GCTTCTACTCCGTTGATCAGCAT 60.740 47.826 10.36 0.00 0.00 3.79
5227 5315 4.437239 CTTCTACTCCGTTGATCAGCATT 58.563 43.478 10.36 0.00 0.00 3.56
5228 5316 4.471904 TCTACTCCGTTGATCAGCATTT 57.528 40.909 10.36 0.00 0.00 2.32
5229 5317 4.183865 TCTACTCCGTTGATCAGCATTTG 58.816 43.478 10.36 0.00 0.00 2.32
5230 5318 3.057969 ACTCCGTTGATCAGCATTTGA 57.942 42.857 10.36 0.01 40.85 2.69
5231 5319 3.005554 ACTCCGTTGATCAGCATTTGAG 58.994 45.455 10.36 10.93 39.68 3.02
5232 5320 3.264947 CTCCGTTGATCAGCATTTGAGA 58.735 45.455 10.36 0.00 39.68 3.27
5236 5324 5.032863 CCGTTGATCAGCATTTGAGATTTC 58.967 41.667 10.36 0.00 39.68 2.17
5237 5325 5.163683 CCGTTGATCAGCATTTGAGATTTCT 60.164 40.000 10.36 0.00 39.68 2.52
5238 5326 6.037500 CCGTTGATCAGCATTTGAGATTTCTA 59.962 38.462 10.36 0.00 39.68 2.10
5248 5361 9.289782 AGCATTTGAGATTTCTACTAACTGTTT 57.710 29.630 0.00 0.00 0.00 2.83
5253 5366 8.462143 TGAGATTTCTACTAACTGTTTAAGCG 57.538 34.615 0.00 0.00 0.00 4.68
5256 5369 9.303537 AGATTTCTACTAACTGTTTAAGCGATC 57.696 33.333 0.00 2.39 0.00 3.69
5288 5401 6.127054 TGAGATTTCTAACCATTGATCTCCGT 60.127 38.462 8.25 0.00 38.99 4.69
5313 5426 4.249661 GGTTCATGACTCTCCTCAGTTTC 58.750 47.826 0.00 0.00 0.00 2.78
5340 5453 5.953571 ACCCTTCCTTCAGTCATACTTTTT 58.046 37.500 0.00 0.00 0.00 1.94
5341 5454 7.086685 ACCCTTCCTTCAGTCATACTTTTTA 57.913 36.000 0.00 0.00 0.00 1.52
5344 5457 7.168905 CCTTCCTTCAGTCATACTTTTTACCT 58.831 38.462 0.00 0.00 0.00 3.08
5351 5464 9.856162 TTCAGTCATACTTTTTACCTTTTACCT 57.144 29.630 0.00 0.00 0.00 3.08
5352 5465 9.856162 TCAGTCATACTTTTTACCTTTTACCTT 57.144 29.630 0.00 0.00 0.00 3.50
5384 5497 6.384258 TTTGAGCTTGTATTGTTGCAGTTA 57.616 33.333 0.00 0.00 0.00 2.24
5402 5515 5.119125 GCAGTTACCGATTGTTAAACTACGT 59.881 40.000 0.00 0.00 27.28 3.57
5430 5543 4.250464 TGAACCTTAGTTGTAATCAGCGG 58.750 43.478 0.00 0.00 35.94 5.52
5431 5544 3.975168 ACCTTAGTTGTAATCAGCGGT 57.025 42.857 0.00 0.00 0.00 5.68
5432 5545 3.596214 ACCTTAGTTGTAATCAGCGGTG 58.404 45.455 8.67 8.67 0.00 4.94
5439 5552 3.410631 TGTAATCAGCGGTGGAGAAAA 57.589 42.857 15.67 0.00 0.00 2.29
5440 5553 3.950397 TGTAATCAGCGGTGGAGAAAAT 58.050 40.909 15.67 0.00 0.00 1.82
5453 5566 6.589454 GGTGGAGAAAATGCAAAAATAAACG 58.411 36.000 0.00 0.00 0.00 3.60
5465 5578 7.630924 TGCAAAAATAAACGGTAAAATGTTGG 58.369 30.769 0.00 0.00 0.00 3.77
5466 5579 6.575572 GCAAAAATAAACGGTAAAATGTTGGC 59.424 34.615 0.00 0.00 0.00 4.52
5467 5580 6.455045 AAAATAAACGGTAAAATGTTGGCG 57.545 33.333 0.00 0.00 0.00 5.69
5468 5581 1.773410 AAACGGTAAAATGTTGGCGC 58.227 45.000 0.00 0.00 0.00 6.53
5469 5582 0.955905 AACGGTAAAATGTTGGCGCT 59.044 45.000 7.64 0.00 0.00 5.92
5470 5583 0.239879 ACGGTAAAATGTTGGCGCTG 59.760 50.000 7.64 0.00 0.00 5.18
5471 5584 0.519519 CGGTAAAATGTTGGCGCTGA 59.480 50.000 7.64 0.00 0.00 4.26
5472 5585 1.465689 CGGTAAAATGTTGGCGCTGAG 60.466 52.381 7.64 0.00 0.00 3.35
5488 5601 4.139183 GCTGAGCGATAAAATAGGCAAG 57.861 45.455 0.00 0.00 0.00 4.01
5489 5602 3.809832 GCTGAGCGATAAAATAGGCAAGA 59.190 43.478 0.00 0.00 0.00 3.02
5490 5603 4.319118 GCTGAGCGATAAAATAGGCAAGAC 60.319 45.833 0.00 0.00 0.00 3.01
5491 5604 4.127171 TGAGCGATAAAATAGGCAAGACC 58.873 43.478 0.00 0.00 39.61 3.85
5492 5605 4.127171 GAGCGATAAAATAGGCAAGACCA 58.873 43.478 0.00 0.00 43.14 4.02
5493 5606 4.523083 AGCGATAAAATAGGCAAGACCAA 58.477 39.130 0.00 0.00 43.14 3.67
5494 5607 4.947388 AGCGATAAAATAGGCAAGACCAAA 59.053 37.500 0.00 0.00 43.14 3.28
5495 5608 5.594317 AGCGATAAAATAGGCAAGACCAAAT 59.406 36.000 0.00 0.00 43.14 2.32
5496 5609 5.915196 GCGATAAAATAGGCAAGACCAAATC 59.085 40.000 0.00 0.00 43.14 2.17
5497 5610 6.459573 GCGATAAAATAGGCAAGACCAAATCA 60.460 38.462 0.00 0.00 43.14 2.57
5498 5611 6.912591 CGATAAAATAGGCAAGACCAAATCAC 59.087 38.462 0.00 0.00 43.14 3.06
5499 5612 7.201732 CGATAAAATAGGCAAGACCAAATCACT 60.202 37.037 0.00 0.00 43.14 3.41
5500 5613 5.649782 AAATAGGCAAGACCAAATCACTG 57.350 39.130 0.00 0.00 43.14 3.66
5501 5614 2.957402 AGGCAAGACCAAATCACTGA 57.043 45.000 0.00 0.00 43.14 3.41
5502 5615 3.446442 AGGCAAGACCAAATCACTGAT 57.554 42.857 0.00 0.00 43.14 2.90
5503 5616 4.574674 AGGCAAGACCAAATCACTGATA 57.425 40.909 0.00 0.00 43.14 2.15
5504 5617 4.922206 AGGCAAGACCAAATCACTGATAA 58.078 39.130 0.00 0.00 43.14 1.75
5505 5618 4.702131 AGGCAAGACCAAATCACTGATAAC 59.298 41.667 0.00 0.00 43.14 1.89
5506 5619 4.142381 GGCAAGACCAAATCACTGATAACC 60.142 45.833 0.00 0.00 38.86 2.85
5507 5620 4.142381 GCAAGACCAAATCACTGATAACCC 60.142 45.833 0.00 0.00 0.00 4.11
5508 5621 4.927267 AGACCAAATCACTGATAACCCA 57.073 40.909 0.00 0.00 0.00 4.51
5509 5622 4.589908 AGACCAAATCACTGATAACCCAC 58.410 43.478 0.00 0.00 0.00 4.61
5510 5623 4.042809 AGACCAAATCACTGATAACCCACA 59.957 41.667 0.00 0.00 0.00 4.17
5511 5624 4.735369 ACCAAATCACTGATAACCCACAA 58.265 39.130 0.00 0.00 0.00 3.33
5512 5625 5.332743 ACCAAATCACTGATAACCCACAAT 58.667 37.500 0.00 0.00 0.00 2.71
5513 5626 6.489603 ACCAAATCACTGATAACCCACAATA 58.510 36.000 0.00 0.00 0.00 1.90
5514 5627 7.125391 ACCAAATCACTGATAACCCACAATAT 58.875 34.615 0.00 0.00 0.00 1.28
5515 5628 7.068593 ACCAAATCACTGATAACCCACAATATG 59.931 37.037 0.00 0.00 0.00 1.78
5516 5629 6.639632 AATCACTGATAACCCACAATATGC 57.360 37.500 0.00 0.00 0.00 3.14
5517 5630 5.372343 TCACTGATAACCCACAATATGCT 57.628 39.130 0.00 0.00 0.00 3.79
5518 5631 6.493189 TCACTGATAACCCACAATATGCTA 57.507 37.500 0.00 0.00 0.00 3.49
5519 5632 6.288294 TCACTGATAACCCACAATATGCTAC 58.712 40.000 0.00 0.00 0.00 3.58
5520 5633 5.470098 CACTGATAACCCACAATATGCTACC 59.530 44.000 0.00 0.00 0.00 3.18
5521 5634 4.637276 TGATAACCCACAATATGCTACCG 58.363 43.478 0.00 0.00 0.00 4.02
5522 5635 1.675552 AACCCACAATATGCTACCGC 58.324 50.000 0.00 0.00 0.00 5.68
5532 5645 2.927004 TGCTACCGCAGTTTCTTGG 58.073 52.632 0.00 0.00 42.25 3.61
5533 5646 1.234615 TGCTACCGCAGTTTCTTGGC 61.235 55.000 0.00 0.00 42.25 4.52
5534 5647 1.234615 GCTACCGCAGTTTCTTGGCA 61.235 55.000 0.00 0.00 35.78 4.92
5535 5648 0.517316 CTACCGCAGTTTCTTGGCAC 59.483 55.000 0.00 0.00 0.00 5.01
5536 5649 0.887387 TACCGCAGTTTCTTGGCACC 60.887 55.000 0.00 0.00 0.00 5.01
5537 5650 2.192861 CCGCAGTTTCTTGGCACCA 61.193 57.895 0.00 0.00 0.00 4.17
5538 5651 1.283793 CGCAGTTTCTTGGCACCAG 59.716 57.895 0.00 0.00 0.00 4.00
5539 5652 1.447317 CGCAGTTTCTTGGCACCAGT 61.447 55.000 0.00 0.00 0.00 4.00
5540 5653 1.604604 GCAGTTTCTTGGCACCAGTA 58.395 50.000 0.00 0.00 0.00 2.74
5541 5654 2.162681 GCAGTTTCTTGGCACCAGTAT 58.837 47.619 0.00 0.00 0.00 2.12
5542 5655 2.162408 GCAGTTTCTTGGCACCAGTATC 59.838 50.000 0.00 0.00 0.00 2.24
5543 5656 2.416547 CAGTTTCTTGGCACCAGTATCG 59.583 50.000 0.00 0.00 0.00 2.92
5544 5657 2.038557 AGTTTCTTGGCACCAGTATCGT 59.961 45.455 0.00 0.00 0.00 3.73
5545 5658 2.812011 GTTTCTTGGCACCAGTATCGTT 59.188 45.455 0.00 0.00 0.00 3.85
5546 5659 2.093306 TCTTGGCACCAGTATCGTTG 57.907 50.000 0.00 0.00 0.00 4.10
5547 5660 0.447801 CTTGGCACCAGTATCGTTGC 59.552 55.000 0.00 0.00 0.00 4.17
5548 5661 0.036164 TTGGCACCAGTATCGTTGCT 59.964 50.000 0.00 0.00 0.00 3.91
5549 5662 0.899019 TGGCACCAGTATCGTTGCTA 59.101 50.000 0.00 0.00 0.00 3.49
5550 5663 1.276705 TGGCACCAGTATCGTTGCTAA 59.723 47.619 0.00 0.00 0.00 3.09
5551 5664 1.933853 GGCACCAGTATCGTTGCTAAG 59.066 52.381 0.00 0.00 0.00 2.18
5552 5665 1.327764 GCACCAGTATCGTTGCTAAGC 59.672 52.381 0.00 0.00 0.00 3.09
5553 5666 2.893637 CACCAGTATCGTTGCTAAGCT 58.106 47.619 0.00 0.00 0.00 3.74
5554 5667 2.604914 CACCAGTATCGTTGCTAAGCTG 59.395 50.000 0.00 0.00 0.00 4.24
5555 5668 2.233922 ACCAGTATCGTTGCTAAGCTGT 59.766 45.455 0.00 0.00 0.00 4.40
5558 5671 4.436050 CCAGTATCGTTGCTAAGCTGTTTG 60.436 45.833 0.00 0.00 0.00 2.93
5647 5763 4.143030 CGTTGAGGCAAATCTTGTACTCAG 60.143 45.833 12.38 0.00 42.85 3.35
5648 5764 4.623932 TGAGGCAAATCTTGTACTCAGT 57.376 40.909 10.05 0.00 39.80 3.41
5649 5765 5.738619 TGAGGCAAATCTTGTACTCAGTA 57.261 39.130 10.05 0.00 39.80 2.74
5650 5766 5.724328 TGAGGCAAATCTTGTACTCAGTAG 58.276 41.667 10.05 0.00 39.80 2.57
5651 5767 4.508662 AGGCAAATCTTGTACTCAGTAGC 58.491 43.478 0.00 0.00 0.00 3.58
5652 5768 4.223923 AGGCAAATCTTGTACTCAGTAGCT 59.776 41.667 0.00 0.00 0.00 3.32
5654 5770 6.070767 AGGCAAATCTTGTACTCAGTAGCTTA 60.071 38.462 0.00 0.00 0.00 3.09
5655 5771 6.763610 GGCAAATCTTGTACTCAGTAGCTTAT 59.236 38.462 0.00 0.00 0.00 1.73
5656 5772 7.254590 GGCAAATCTTGTACTCAGTAGCTTATG 60.255 40.741 0.00 0.00 0.00 1.90
5657 5773 7.625553 CAAATCTTGTACTCAGTAGCTTATGC 58.374 38.462 0.00 0.00 40.05 3.14
5658 5774 4.921547 TCTTGTACTCAGTAGCTTATGCG 58.078 43.478 0.00 0.00 45.42 4.73
5659 5775 3.710326 TGTACTCAGTAGCTTATGCGG 57.290 47.619 0.00 0.00 45.42 5.69
5660 5776 3.021695 TGTACTCAGTAGCTTATGCGGT 58.978 45.455 0.00 0.00 45.42 5.68
5661 5777 4.201657 TGTACTCAGTAGCTTATGCGGTA 58.798 43.478 0.00 0.00 45.42 4.02
5662 5778 3.712091 ACTCAGTAGCTTATGCGGTAC 57.288 47.619 0.00 0.00 45.42 3.34
5663 5779 3.288964 ACTCAGTAGCTTATGCGGTACT 58.711 45.455 0.00 0.00 45.98 2.73
5664 5780 4.458397 ACTCAGTAGCTTATGCGGTACTA 58.542 43.478 0.00 0.00 43.97 1.82
5665 5781 5.071370 ACTCAGTAGCTTATGCGGTACTAT 58.929 41.667 0.00 0.00 43.97 2.12
5666 5782 6.236409 ACTCAGTAGCTTATGCGGTACTATA 58.764 40.000 0.00 1.09 43.97 1.31
5667 5783 6.713903 ACTCAGTAGCTTATGCGGTACTATAA 59.286 38.462 0.00 0.00 43.97 0.98
5668 5784 6.906659 TCAGTAGCTTATGCGGTACTATAAC 58.093 40.000 0.00 0.00 43.97 1.89
5669 5785 6.487668 TCAGTAGCTTATGCGGTACTATAACA 59.512 38.462 0.00 0.00 43.97 2.41
5670 5786 6.581542 CAGTAGCTTATGCGGTACTATAACAC 59.418 42.308 0.00 0.00 43.97 3.32
5799 5951 9.660180 GTTTTTCTAGAGAAAGATGATACCACT 57.340 33.333 8.62 0.00 43.90 4.00
5806 5958 6.703607 AGAGAAAGATGATACCACTTAATGCG 59.296 38.462 0.00 0.00 0.00 4.73
5811 5963 2.290367 TGATACCACTTAATGCGCATGC 59.710 45.455 26.09 7.91 43.20 4.06
5818 5970 3.009723 ACTTAATGCGCATGCTAAGTGT 58.990 40.909 31.93 18.15 39.34 3.55
5832 5984 4.000988 GCTAAGTGTGGCTAGCTTGTTTA 58.999 43.478 15.72 6.83 33.15 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.404098 GTGCCTGGTACACGGGGG 62.404 72.222 10.24 0.00 46.45 5.40
21 22 4.404098 GGTGCCTGGTACACGGGG 62.404 72.222 16.84 1.06 46.45 5.73
35 36 3.402681 AGAGGTGGGATGGCGGTG 61.403 66.667 0.00 0.00 0.00 4.94
36 37 3.402681 CAGAGGTGGGATGGCGGT 61.403 66.667 0.00 0.00 0.00 5.68
37 38 4.181010 CCAGAGGTGGGATGGCGG 62.181 72.222 0.00 0.00 40.67 6.13
38 39 3.083349 TCCAGAGGTGGGATGGCG 61.083 66.667 0.00 0.00 45.11 5.69
39 40 2.592308 GTCCAGAGGTGGGATGGC 59.408 66.667 0.00 0.00 45.11 4.40
40 41 2.903357 CGTCCAGAGGTGGGATGG 59.097 66.667 0.00 0.00 45.11 3.51
41 42 2.903357 CCGTCCAGAGGTGGGATG 59.097 66.667 0.00 0.00 45.11 3.51
42 43 3.083997 GCCGTCCAGAGGTGGGAT 61.084 66.667 0.00 0.00 45.11 3.85
61 62 3.885521 GAGGTCGACGTAGGCCGG 61.886 72.222 13.87 0.00 41.68 6.13
62 63 4.233635 CGAGGTCGACGTAGGCCG 62.234 72.222 13.87 6.71 41.68 6.13
63 64 3.105852 GACGAGGTCGACGTAGGCC 62.106 68.421 19.96 11.81 43.97 5.19
64 65 1.915614 TTGACGAGGTCGACGTAGGC 61.916 60.000 19.96 18.17 43.97 3.93
65 66 0.179205 GTTGACGAGGTCGACGTAGG 60.179 60.000 19.96 13.50 43.97 3.18
66 67 3.286901 GTTGACGAGGTCGACGTAG 57.713 57.895 11.30 13.65 43.97 3.51
79 80 0.112008 CCGTTTTCGTCGTCGTTGAC 60.112 55.000 1.33 0.60 42.35 3.18
80 81 1.810221 GCCGTTTTCGTCGTCGTTGA 61.810 55.000 1.33 0.00 42.35 3.18
81 82 1.435966 GCCGTTTTCGTCGTCGTTG 60.436 57.895 1.33 0.00 42.35 4.10
82 83 2.919860 CGCCGTTTTCGTCGTCGTT 61.920 57.895 1.33 0.00 39.81 3.85
83 84 3.389211 CGCCGTTTTCGTCGTCGT 61.389 61.111 1.33 0.00 39.81 4.34
84 85 4.112256 CCGCCGTTTTCGTCGTCG 62.112 66.667 0.00 0.00 43.14 5.12
85 86 4.419957 GCCGCCGTTTTCGTCGTC 62.420 66.667 0.00 0.00 43.14 4.20
88 89 4.379143 GTGGCCGCCGTTTTCGTC 62.379 66.667 4.45 0.00 42.35 4.20
89 90 4.922026 AGTGGCCGCCGTTTTCGT 62.922 61.111 14.07 0.00 42.35 3.85
90 91 4.383602 CAGTGGCCGCCGTTTTCG 62.384 66.667 14.07 0.00 43.67 3.46
91 92 2.966309 CTCAGTGGCCGCCGTTTTC 61.966 63.158 14.07 0.00 0.00 2.29
92 93 2.951475 TTCTCAGTGGCCGCCGTTTT 62.951 55.000 14.07 0.00 0.00 2.43
93 94 3.469863 TTCTCAGTGGCCGCCGTTT 62.470 57.895 14.07 0.00 0.00 3.60
94 95 3.883744 CTTCTCAGTGGCCGCCGTT 62.884 63.158 14.07 0.00 0.00 4.44
95 96 4.379243 CTTCTCAGTGGCCGCCGT 62.379 66.667 14.07 0.00 0.00 5.68
96 97 4.069232 TCTTCTCAGTGGCCGCCG 62.069 66.667 14.07 1.87 0.00 6.46
97 98 2.435059 GTCTTCTCAGTGGCCGCC 60.435 66.667 14.07 1.04 0.00 6.13
98 99 2.811317 CGTCTTCTCAGTGGCCGC 60.811 66.667 8.71 8.71 0.00 6.53
99 100 1.444553 GTCGTCTTCTCAGTGGCCG 60.445 63.158 0.00 0.00 0.00 6.13
100 101 1.079750 GGTCGTCTTCTCAGTGGCC 60.080 63.158 0.00 0.00 0.00 5.36
101 102 0.667792 GTGGTCGTCTTCTCAGTGGC 60.668 60.000 0.00 0.00 0.00 5.01
102 103 0.387367 CGTGGTCGTCTTCTCAGTGG 60.387 60.000 0.00 0.00 0.00 4.00
103 104 0.591659 TCGTGGTCGTCTTCTCAGTG 59.408 55.000 0.00 0.00 38.33 3.66
104 105 0.592148 GTCGTGGTCGTCTTCTCAGT 59.408 55.000 0.00 0.00 38.33 3.41
105 106 0.109689 GGTCGTGGTCGTCTTCTCAG 60.110 60.000 0.00 0.00 38.33 3.35
106 107 0.820482 TGGTCGTGGTCGTCTTCTCA 60.820 55.000 0.00 0.00 38.33 3.27
107 108 0.386985 GTGGTCGTGGTCGTCTTCTC 60.387 60.000 0.00 0.00 38.33 2.87
108 109 1.658673 GTGGTCGTGGTCGTCTTCT 59.341 57.895 0.00 0.00 38.33 2.85
109 110 1.728426 CGTGGTCGTGGTCGTCTTC 60.728 63.158 0.00 0.00 38.33 2.87
110 111 2.333938 CGTGGTCGTGGTCGTCTT 59.666 61.111 0.00 0.00 38.33 3.01
111 112 3.667282 CCGTGGTCGTGGTCGTCT 61.667 66.667 0.00 0.00 38.33 4.18
114 115 4.735132 ATGCCGTGGTCGTGGTCG 62.735 66.667 0.00 0.00 38.55 4.79
115 116 2.813908 GATGCCGTGGTCGTGGTC 60.814 66.667 0.00 0.00 35.01 4.02
116 117 4.735132 CGATGCCGTGGTCGTGGT 62.735 66.667 0.00 0.00 33.42 4.16
117 118 4.429212 TCGATGCCGTGGTCGTGG 62.429 66.667 0.00 0.00 38.85 4.94
118 119 3.179265 GTCGATGCCGTGGTCGTG 61.179 66.667 0.00 0.00 38.85 4.35
119 120 4.771356 CGTCGATGCCGTGGTCGT 62.771 66.667 0.00 0.00 38.85 4.34
127 128 4.899239 CTCCTGCCCGTCGATGCC 62.899 72.222 0.00 0.00 0.00 4.40
146 147 2.796245 AAGAAATTTGTCGCCCGCGC 62.796 55.000 0.00 0.00 39.59 6.86
147 148 0.386731 AAAGAAATTTGTCGCCCGCG 60.387 50.000 0.00 0.00 41.35 6.46
148 149 1.778334 AAAAGAAATTTGTCGCCCGC 58.222 45.000 0.00 0.00 0.00 6.13
178 179 9.559732 CCAGTTCCATAATTCACATAGACATAA 57.440 33.333 0.00 0.00 0.00 1.90
179 180 8.156820 CCCAGTTCCATAATTCACATAGACATA 58.843 37.037 0.00 0.00 0.00 2.29
180 181 7.000472 CCCAGTTCCATAATTCACATAGACAT 59.000 38.462 0.00 0.00 0.00 3.06
181 182 6.069673 ACCCAGTTCCATAATTCACATAGACA 60.070 38.462 0.00 0.00 0.00 3.41
182 183 6.357367 ACCCAGTTCCATAATTCACATAGAC 58.643 40.000 0.00 0.00 0.00 2.59
183 184 6.575244 ACCCAGTTCCATAATTCACATAGA 57.425 37.500 0.00 0.00 0.00 1.98
184 185 5.466728 CGACCCAGTTCCATAATTCACATAG 59.533 44.000 0.00 0.00 0.00 2.23
185 186 5.104693 ACGACCCAGTTCCATAATTCACATA 60.105 40.000 0.00 0.00 0.00 2.29
186 187 4.199310 CGACCCAGTTCCATAATTCACAT 58.801 43.478 0.00 0.00 0.00 3.21
187 188 3.008594 ACGACCCAGTTCCATAATTCACA 59.991 43.478 0.00 0.00 0.00 3.58
188 189 3.606687 ACGACCCAGTTCCATAATTCAC 58.393 45.455 0.00 0.00 0.00 3.18
189 190 3.992943 ACGACCCAGTTCCATAATTCA 57.007 42.857 0.00 0.00 0.00 2.57
190 191 5.048294 ACAAAACGACCCAGTTCCATAATTC 60.048 40.000 0.00 0.00 32.43 2.17
191 192 4.830600 ACAAAACGACCCAGTTCCATAATT 59.169 37.500 0.00 0.00 32.43 1.40
192 193 4.217550 CACAAAACGACCCAGTTCCATAAT 59.782 41.667 0.00 0.00 32.43 1.28
193 194 3.566322 CACAAAACGACCCAGTTCCATAA 59.434 43.478 0.00 0.00 32.43 1.90
194 195 3.142951 CACAAAACGACCCAGTTCCATA 58.857 45.455 0.00 0.00 32.43 2.74
195 196 1.953686 CACAAAACGACCCAGTTCCAT 59.046 47.619 0.00 0.00 32.43 3.41
196 197 1.384525 CACAAAACGACCCAGTTCCA 58.615 50.000 0.00 0.00 32.43 3.53
197 198 0.666374 CCACAAAACGACCCAGTTCC 59.334 55.000 0.00 0.00 32.43 3.62
198 199 0.030235 GCCACAAAACGACCCAGTTC 59.970 55.000 0.00 0.00 32.43 3.01
199 200 1.388837 GGCCACAAAACGACCCAGTT 61.389 55.000 0.00 0.00 35.59 3.16
200 201 1.826487 GGCCACAAAACGACCCAGT 60.826 57.895 0.00 0.00 0.00 4.00
201 202 2.903547 CGGCCACAAAACGACCCAG 61.904 63.158 2.24 0.00 0.00 4.45
202 203 2.902846 CGGCCACAAAACGACCCA 60.903 61.111 2.24 0.00 0.00 4.51
203 204 2.903350 ACGGCCACAAAACGACCC 60.903 61.111 2.24 0.00 0.00 4.46
204 205 1.512156 ATCACGGCCACAAAACGACC 61.512 55.000 2.24 0.00 0.00 4.79
205 206 0.385473 CATCACGGCCACAAAACGAC 60.385 55.000 2.24 0.00 0.00 4.34
206 207 0.816018 ACATCACGGCCACAAAACGA 60.816 50.000 2.24 0.00 0.00 3.85
207 208 0.030101 AACATCACGGCCACAAAACG 59.970 50.000 2.24 0.00 0.00 3.60
208 209 2.217429 AAACATCACGGCCACAAAAC 57.783 45.000 2.24 0.00 0.00 2.43
209 210 4.592485 ATTAAACATCACGGCCACAAAA 57.408 36.364 2.24 0.00 0.00 2.44
210 211 4.592485 AATTAAACATCACGGCCACAAA 57.408 36.364 2.24 0.00 0.00 2.83
211 212 5.906113 ATAATTAAACATCACGGCCACAA 57.094 34.783 2.24 0.00 0.00 3.33
212 213 5.650266 AGAATAATTAAACATCACGGCCACA 59.350 36.000 2.24 0.00 0.00 4.17
213 214 6.131544 AGAATAATTAAACATCACGGCCAC 57.868 37.500 2.24 0.00 0.00 5.01
214 215 6.767524 AAGAATAATTAAACATCACGGCCA 57.232 33.333 2.24 0.00 0.00 5.36
306 307 9.289782 GCACTTTAAATTATGTCTGGGATAGAT 57.710 33.333 0.00 0.00 37.83 1.98
307 308 7.441157 CGCACTTTAAATTATGTCTGGGATAGA 59.559 37.037 0.00 0.00 0.00 1.98
308 309 7.307989 CCGCACTTTAAATTATGTCTGGGATAG 60.308 40.741 0.00 0.00 0.00 2.08
309 310 6.485313 CCGCACTTTAAATTATGTCTGGGATA 59.515 38.462 0.00 0.00 0.00 2.59
310 311 5.299279 CCGCACTTTAAATTATGTCTGGGAT 59.701 40.000 0.00 0.00 0.00 3.85
311 312 4.638421 CCGCACTTTAAATTATGTCTGGGA 59.362 41.667 0.00 0.00 0.00 4.37
312 313 4.733523 GCCGCACTTTAAATTATGTCTGGG 60.734 45.833 0.00 0.00 0.00 4.45
313 314 4.351192 GCCGCACTTTAAATTATGTCTGG 58.649 43.478 0.00 0.00 0.00 3.86
314 315 4.142491 TGGCCGCACTTTAAATTATGTCTG 60.142 41.667 0.00 0.00 0.00 3.51
315 316 4.013728 TGGCCGCACTTTAAATTATGTCT 58.986 39.130 0.00 0.00 0.00 3.41
316 317 4.102649 GTGGCCGCACTTTAAATTATGTC 58.897 43.478 12.58 0.00 0.00 3.06
317 318 3.426963 CGTGGCCGCACTTTAAATTATGT 60.427 43.478 18.18 0.00 0.00 2.29
318 319 3.105203 CGTGGCCGCACTTTAAATTATG 58.895 45.455 18.18 0.00 0.00 1.90
319 320 2.750712 ACGTGGCCGCACTTTAAATTAT 59.249 40.909 18.18 0.00 37.70 1.28
320 321 2.095668 CACGTGGCCGCACTTTAAATTA 60.096 45.455 18.18 0.00 37.70 1.40
321 322 0.955905 ACGTGGCCGCACTTTAAATT 59.044 45.000 18.18 0.00 37.70 1.82
322 323 0.239879 CACGTGGCCGCACTTTAAAT 59.760 50.000 18.18 0.00 37.70 1.40
323 324 1.096386 ACACGTGGCCGCACTTTAAA 61.096 50.000 21.57 0.00 37.70 1.52
324 325 1.096386 AACACGTGGCCGCACTTTAA 61.096 50.000 21.57 0.00 37.70 1.52
325 326 1.524165 AACACGTGGCCGCACTTTA 60.524 52.632 21.57 0.00 37.70 1.85
326 327 2.826738 AACACGTGGCCGCACTTT 60.827 55.556 21.57 2.05 37.70 2.66
327 328 3.582120 CAACACGTGGCCGCACTT 61.582 61.111 21.57 0.00 37.70 3.16
336 337 1.958715 TCGGTGCATCCAACACGTG 60.959 57.895 15.48 15.48 38.98 4.49
337 338 1.959226 GTCGGTGCATCCAACACGT 60.959 57.895 0.00 0.00 38.98 4.49
338 339 1.667830 AGTCGGTGCATCCAACACG 60.668 57.895 0.00 0.00 38.98 4.49
339 340 1.868997 CAGTCGGTGCATCCAACAC 59.131 57.895 0.00 0.00 37.31 3.32
340 341 4.377370 CAGTCGGTGCATCCAACA 57.623 55.556 0.00 0.00 35.57 3.33
349 350 1.819632 GGCTATTGGGCAGTCGGTG 60.820 63.158 0.00 0.00 40.53 4.94
350 351 2.590092 GGCTATTGGGCAGTCGGT 59.410 61.111 0.00 0.00 40.53 4.69
351 352 2.203209 GGGCTATTGGGCAGTCGG 60.203 66.667 0.00 0.00 42.84 4.79
352 353 2.203209 GGGGCTATTGGGCAGTCG 60.203 66.667 0.00 0.00 42.84 4.18
353 354 0.324275 TTTGGGGCTATTGGGCAGTC 60.324 55.000 0.00 0.00 42.84 3.51
354 355 0.614697 GTTTGGGGCTATTGGGCAGT 60.615 55.000 0.00 0.00 42.84 4.40
355 356 1.666209 CGTTTGGGGCTATTGGGCAG 61.666 60.000 0.00 0.00 42.84 4.85
356 357 1.680651 CGTTTGGGGCTATTGGGCA 60.681 57.895 0.00 0.00 42.84 5.36
357 358 2.423064 CCGTTTGGGGCTATTGGGC 61.423 63.158 0.00 0.00 40.05 5.36
358 359 1.035385 GTCCGTTTGGGGCTATTGGG 61.035 60.000 0.00 0.00 37.47 4.12
359 360 0.322997 TGTCCGTTTGGGGCTATTGG 60.323 55.000 0.00 0.00 42.62 3.16
360 361 1.405105 CATGTCCGTTTGGGGCTATTG 59.595 52.381 0.00 0.00 42.62 1.90
361 362 1.283613 TCATGTCCGTTTGGGGCTATT 59.716 47.619 0.00 0.00 42.62 1.73
362 363 0.916086 TCATGTCCGTTTGGGGCTAT 59.084 50.000 0.00 0.00 42.62 2.97
363 364 0.251916 CTCATGTCCGTTTGGGGCTA 59.748 55.000 0.00 0.00 42.62 3.93
364 365 1.002134 CTCATGTCCGTTTGGGGCT 60.002 57.895 0.00 0.00 42.62 5.19
365 366 2.700773 GCTCATGTCCGTTTGGGGC 61.701 63.158 0.00 0.00 42.42 5.80
366 367 2.398554 CGCTCATGTCCGTTTGGGG 61.399 63.158 0.00 0.00 36.01 4.96
367 368 2.398554 CCGCTCATGTCCGTTTGGG 61.399 63.158 0.00 0.00 35.24 4.12
368 369 3.039202 GCCGCTCATGTCCGTTTGG 62.039 63.158 0.00 0.00 0.00 3.28
369 370 2.480555 GCCGCTCATGTCCGTTTG 59.519 61.111 0.00 0.00 0.00 2.93
370 371 2.746277 GGCCGCTCATGTCCGTTT 60.746 61.111 0.00 0.00 0.00 3.60
371 372 3.665675 GAGGCCGCTCATGTCCGTT 62.666 63.158 0.00 0.00 0.00 4.44
372 373 4.148825 GAGGCCGCTCATGTCCGT 62.149 66.667 0.00 0.00 0.00 4.69
373 374 2.930385 AATGAGGCCGCTCATGTCCG 62.930 60.000 8.34 0.00 42.63 4.79
374 375 1.153086 AATGAGGCCGCTCATGTCC 60.153 57.895 8.34 0.00 42.63 4.02
375 376 2.020131 CAATGAGGCCGCTCATGTC 58.980 57.895 8.34 0.00 42.63 3.06
376 377 2.117156 GCAATGAGGCCGCTCATGT 61.117 57.895 8.34 0.00 42.63 3.21
377 378 2.719979 GCAATGAGGCCGCTCATG 59.280 61.111 8.34 5.25 42.63 3.07
378 379 2.517875 GGCAATGAGGCCGCTCAT 60.518 61.111 8.34 4.68 45.40 2.90
385 386 0.176449 GTTTGGGATGGCAATGAGGC 59.824 55.000 0.00 0.00 44.50 4.70
386 387 0.457035 CGTTTGGGATGGCAATGAGG 59.543 55.000 0.00 0.00 0.00 3.86
387 388 1.462616 TCGTTTGGGATGGCAATGAG 58.537 50.000 0.00 0.00 0.00 2.90
388 389 1.543802 GTTCGTTTGGGATGGCAATGA 59.456 47.619 0.00 0.00 0.00 2.57
389 390 1.732077 CGTTCGTTTGGGATGGCAATG 60.732 52.381 0.00 0.00 0.00 2.82
390 391 0.525761 CGTTCGTTTGGGATGGCAAT 59.474 50.000 0.00 0.00 0.00 3.56
391 392 0.535328 TCGTTCGTTTGGGATGGCAA 60.535 50.000 0.00 0.00 0.00 4.52
392 393 0.535328 TTCGTTCGTTTGGGATGGCA 60.535 50.000 0.00 0.00 0.00 4.92
393 394 0.594110 TTTCGTTCGTTTGGGATGGC 59.406 50.000 0.00 0.00 0.00 4.40
394 395 2.033550 TGTTTTCGTTCGTTTGGGATGG 59.966 45.455 0.00 0.00 0.00 3.51
395 396 3.296628 CTGTTTTCGTTCGTTTGGGATG 58.703 45.455 0.00 0.00 0.00 3.51
396 397 2.292292 CCTGTTTTCGTTCGTTTGGGAT 59.708 45.455 0.00 0.00 0.00 3.85
397 398 1.671845 CCTGTTTTCGTTCGTTTGGGA 59.328 47.619 0.00 0.00 0.00 4.37
398 399 1.862411 GCCTGTTTTCGTTCGTTTGGG 60.862 52.381 0.00 0.00 0.00 4.12
399 400 1.472990 GCCTGTTTTCGTTCGTTTGG 58.527 50.000 0.00 0.00 0.00 3.28
400 401 1.202200 TGGCCTGTTTTCGTTCGTTTG 60.202 47.619 3.32 0.00 0.00 2.93
401 402 1.096416 TGGCCTGTTTTCGTTCGTTT 58.904 45.000 3.32 0.00 0.00 3.60
402 403 1.096416 TTGGCCTGTTTTCGTTCGTT 58.904 45.000 3.32 0.00 0.00 3.85
403 404 1.096416 TTTGGCCTGTTTTCGTTCGT 58.904 45.000 3.32 0.00 0.00 3.85
404 405 1.064952 AGTTTGGCCTGTTTTCGTTCG 59.935 47.619 3.32 0.00 0.00 3.95
405 406 2.459934 CAGTTTGGCCTGTTTTCGTTC 58.540 47.619 3.32 0.00 0.00 3.95
406 407 1.136110 CCAGTTTGGCCTGTTTTCGTT 59.864 47.619 3.32 0.00 0.00 3.85
407 408 0.744281 CCAGTTTGGCCTGTTTTCGT 59.256 50.000 3.32 0.00 0.00 3.85
408 409 1.028905 TCCAGTTTGGCCTGTTTTCG 58.971 50.000 3.32 0.00 37.47 3.46
409 410 1.269051 CGTCCAGTTTGGCCTGTTTTC 60.269 52.381 3.32 0.00 37.47 2.29
410 411 0.744281 CGTCCAGTTTGGCCTGTTTT 59.256 50.000 3.32 0.00 37.47 2.43
411 412 1.106944 CCGTCCAGTTTGGCCTGTTT 61.107 55.000 3.32 0.00 37.47 2.83
412 413 1.528309 CCGTCCAGTTTGGCCTGTT 60.528 57.895 3.32 0.00 37.47 3.16
413 414 2.113139 CCGTCCAGTTTGGCCTGT 59.887 61.111 3.32 0.00 37.47 4.00
414 415 1.966451 GACCGTCCAGTTTGGCCTG 60.966 63.158 3.32 0.00 37.47 4.85
415 416 2.430367 GACCGTCCAGTTTGGCCT 59.570 61.111 3.32 0.00 37.47 5.19
416 417 2.671963 GGACCGTCCAGTTTGGCC 60.672 66.667 13.05 0.00 37.47 5.36
417 418 3.047877 CGGACCGTCCAGTTTGGC 61.048 66.667 17.87 0.00 37.47 4.52
418 419 0.033781 TAACGGACCGTCCAGTTTGG 59.966 55.000 22.00 8.99 39.99 3.28
419 420 1.425412 CTAACGGACCGTCCAGTTTG 58.575 55.000 22.00 19.59 39.99 2.93
420 421 0.319405 CCTAACGGACCGTCCAGTTT 59.681 55.000 22.00 5.88 39.99 2.66
421 422 1.538687 CCCTAACGGACCGTCCAGTT 61.539 60.000 22.00 22.62 39.99 3.16
422 423 1.980772 CCCTAACGGACCGTCCAGT 60.981 63.158 22.00 7.13 39.99 4.00
423 424 2.718073 CCCCTAACGGACCGTCCAG 61.718 68.421 22.00 19.29 39.99 3.86
424 425 2.681064 CCCCTAACGGACCGTCCA 60.681 66.667 22.00 10.55 39.99 4.02
425 426 2.681421 ACCCCTAACGGACCGTCC 60.681 66.667 22.00 7.59 39.99 4.79
426 427 1.941999 CTCACCCCTAACGGACCGTC 61.942 65.000 22.00 0.00 39.99 4.79
427 428 1.980772 CTCACCCCTAACGGACCGT 60.981 63.158 15.37 15.37 43.97 4.83
428 429 1.538687 AACTCACCCCTAACGGACCG 61.539 60.000 13.61 13.61 0.00 4.79
429 430 0.036671 CAACTCACCCCTAACGGACC 60.037 60.000 0.00 0.00 0.00 4.46
430 431 0.036671 CCAACTCACCCCTAACGGAC 60.037 60.000 0.00 0.00 0.00 4.79
431 432 0.472352 ACCAACTCACCCCTAACGGA 60.472 55.000 0.00 0.00 0.00 4.69
432 433 0.036671 GACCAACTCACCCCTAACGG 60.037 60.000 0.00 0.00 0.00 4.44
433 434 0.974383 AGACCAACTCACCCCTAACG 59.026 55.000 0.00 0.00 0.00 3.18
434 435 4.628963 TTAAGACCAACTCACCCCTAAC 57.371 45.455 0.00 0.00 0.00 2.34
435 436 4.600111 ACATTAAGACCAACTCACCCCTAA 59.400 41.667 0.00 0.00 0.00 2.69
436 437 4.172807 ACATTAAGACCAACTCACCCCTA 58.827 43.478 0.00 0.00 0.00 3.53
437 438 2.986728 ACATTAAGACCAACTCACCCCT 59.013 45.455 0.00 0.00 0.00 4.79
438 439 3.244770 TGACATTAAGACCAACTCACCCC 60.245 47.826 0.00 0.00 0.00 4.95
439 440 3.751698 GTGACATTAAGACCAACTCACCC 59.248 47.826 0.00 0.00 0.00 4.61
440 441 3.751698 GGTGACATTAAGACCAACTCACC 59.248 47.826 0.00 0.00 38.34 4.02
441 442 3.751698 GGGTGACATTAAGACCAACTCAC 59.248 47.826 0.00 0.00 0.00 3.51
442 443 3.650942 AGGGTGACATTAAGACCAACTCA 59.349 43.478 0.00 0.00 0.00 3.41
443 444 4.287766 AGGGTGACATTAAGACCAACTC 57.712 45.455 0.00 0.00 0.00 3.01
444 445 4.398319 CAAGGGTGACATTAAGACCAACT 58.602 43.478 0.00 0.00 29.99 3.16
445 446 3.057526 GCAAGGGTGACATTAAGACCAAC 60.058 47.826 0.00 0.00 29.99 3.77
446 447 3.153919 GCAAGGGTGACATTAAGACCAA 58.846 45.455 0.00 0.00 29.99 3.67
447 448 2.375174 AGCAAGGGTGACATTAAGACCA 59.625 45.455 0.00 0.00 29.99 4.02
448 449 2.749621 CAGCAAGGGTGACATTAAGACC 59.250 50.000 0.00 0.00 32.22 3.85
449 450 3.412386 ACAGCAAGGGTGACATTAAGAC 58.588 45.455 2.05 0.00 34.87 3.01
450 451 3.788227 ACAGCAAGGGTGACATTAAGA 57.212 42.857 2.05 0.00 34.87 2.10
451 452 3.191371 GGAACAGCAAGGGTGACATTAAG 59.809 47.826 2.05 0.00 34.87 1.85
452 453 3.153919 GGAACAGCAAGGGTGACATTAA 58.846 45.455 2.05 0.00 34.87 1.40
465 466 1.081509 GCGCATTTTCGGAACAGCA 60.082 52.632 0.30 0.00 0.00 4.41
468 469 0.321741 TAGGGCGCATTTTCGGAACA 60.322 50.000 10.83 0.00 0.00 3.18
597 629 1.524008 CCGGTTTGGACTTTGGAGCC 61.524 60.000 0.00 0.00 42.00 4.70
658 690 3.344515 CCGATCTGGATATGGTAGACGA 58.655 50.000 0.00 0.00 42.00 4.20
712 752 1.810030 GCCGTTGTGGATCGAGGAC 60.810 63.158 0.00 0.00 42.00 3.85
743 783 0.957888 TGGCCGCGTCATTCATTTCA 60.958 50.000 4.92 0.00 0.00 2.69
744 784 0.381801 ATGGCCGCGTCATTCATTTC 59.618 50.000 4.92 0.00 0.00 2.17
745 785 0.381801 GATGGCCGCGTCATTCATTT 59.618 50.000 4.92 0.00 0.00 2.32
746 786 1.775039 CGATGGCCGCGTCATTCATT 61.775 55.000 4.92 0.00 0.00 2.57
747 787 2.246739 CGATGGCCGCGTCATTCAT 61.247 57.895 4.92 0.82 0.00 2.57
840 880 0.764752 AGATAAGGGGGAAGGGAGCG 60.765 60.000 0.00 0.00 0.00 5.03
843 883 1.340502 AGGAGATAAGGGGGAAGGGA 58.659 55.000 0.00 0.00 0.00 4.20
916 961 0.544223 GGCTTCTTCTTCTCCCTCCC 59.456 60.000 0.00 0.00 0.00 4.30
917 962 0.544223 GGGCTTCTTCTTCTCCCTCC 59.456 60.000 0.00 0.00 34.19 4.30
918 963 1.209261 CTGGGCTTCTTCTTCTCCCTC 59.791 57.143 0.00 0.00 37.83 4.30
919 964 1.284313 CTGGGCTTCTTCTTCTCCCT 58.716 55.000 0.00 0.00 37.83 4.20
920 965 0.393673 GCTGGGCTTCTTCTTCTCCC 60.394 60.000 0.00 0.00 37.49 4.30
963 1009 3.943137 AATGGGCAGACGGAGGGGA 62.943 63.158 0.00 0.00 0.00 4.81
1523 1581 3.610619 TAGAGGTCGGCGTCGGTGA 62.611 63.158 10.62 0.00 36.95 4.02
1558 1616 4.047834 CTCACGGAGCTTGTTGCA 57.952 55.556 0.00 0.00 45.94 4.08
1590 1648 2.757508 CTGAGCGAGCCCTCCTGA 60.758 66.667 0.00 0.00 0.00 3.86
1635 1693 2.024176 TACCAAGGTTCCTGAGCAGA 57.976 50.000 0.00 0.00 0.00 4.26
1723 1781 1.565759 AGCAAGGATCAGGTGGCATAA 59.434 47.619 0.00 0.00 0.00 1.90
1724 1782 1.216064 AGCAAGGATCAGGTGGCATA 58.784 50.000 0.00 0.00 0.00 3.14
1765 1823 5.123344 ACAATTCTAATACTCCGGCAACAAC 59.877 40.000 0.00 0.00 0.00 3.32
1790 1848 1.272807 TTGACTACGGGAAAGGGGAG 58.727 55.000 0.00 0.00 0.00 4.30
1832 1890 7.663043 AAAGTTTTACCCAACTGGAATTACA 57.337 32.000 0.00 0.00 37.07 2.41
1902 1960 3.254470 TCGTCTGACAAACCAAACAGA 57.746 42.857 8.73 0.00 37.11 3.41
1950 2008 8.484641 ACATTTCAGTGACACTAGAATGTATG 57.515 34.615 29.14 23.13 39.23 2.39
1993 2057 4.043561 TCCTTGATGGTTTTAGGCACCTAA 59.956 41.667 5.00 5.00 35.63 2.69
2007 2071 4.444022 CCTCCTCAATGTACTCCTTGATGG 60.444 50.000 0.00 5.38 31.39 3.51
2138 2202 1.827969 AGCACCTCCACTTAGCAGTAG 59.172 52.381 0.00 0.00 0.00 2.57
2173 2237 2.482839 GGTTTTCACAACACCCACATGG 60.483 50.000 0.00 0.00 41.37 3.66
2515 2579 3.937814 TGTCAAATAGTTCAGGCATCGT 58.062 40.909 0.00 0.00 0.00 3.73
2689 2753 4.435436 CTCCAGCGCCGTGTAGCA 62.435 66.667 2.29 0.00 35.48 3.49
2713 2777 6.599244 TCATGGGTAAATCACTTTCTAAGCTG 59.401 38.462 0.00 0.00 0.00 4.24
2731 2795 3.173953 TCCTTCAATTGCTTCATGGGT 57.826 42.857 0.00 0.00 0.00 4.51
2917 2981 5.412286 TCACATCGAAATTGCTCTGAAATCA 59.588 36.000 0.00 0.00 0.00 2.57
2995 3059 7.362662 ACACACATTACTGACAATGAAACATC 58.637 34.615 11.70 0.00 38.01 3.06
2996 3060 7.013178 TGACACACATTACTGACAATGAAACAT 59.987 33.333 11.70 0.00 38.01 2.71
3081 3153 7.661847 GGCCATACAGTTCAGCTAATATTTACT 59.338 37.037 0.00 0.00 0.00 2.24
3082 3154 7.444183 TGGCCATACAGTTCAGCTAATATTTAC 59.556 37.037 0.00 0.00 0.00 2.01
3211 3283 6.672147 AGTTCAGCAAGCTACATACAAAAAG 58.328 36.000 0.00 0.00 0.00 2.27
3344 3416 0.168788 CAAGTGTGGCTGGCATAACG 59.831 55.000 7.33 0.00 0.00 3.18
3413 3485 7.676004 TCAGACTACTGATTAATGTGGTGAAA 58.324 34.615 0.00 0.00 46.55 2.69
3452 3524 8.951243 TCTTCGAATACTGATGATACATAGAGG 58.049 37.037 0.00 0.00 0.00 3.69
3558 3630 0.539518 TAGCGCAGTTTGCCCTGATA 59.460 50.000 11.47 0.00 41.12 2.15
3654 3726 2.025981 AGCACCATATCCTTGTGAAGCA 60.026 45.455 0.00 0.00 31.66 3.91
3766 3838 1.337823 GCTCGTAACAGTGGGACATGT 60.338 52.381 0.00 0.00 44.52 3.21
3770 3842 0.249398 ATGGCTCGTAACAGTGGGAC 59.751 55.000 0.00 0.00 0.00 4.46
4005 4077 4.270325 GGTGTAACAATATCACCTTCGCTC 59.730 45.833 6.35 0.00 45.46 5.03
4008 4080 4.426416 TCGGTGTAACAATATCACCTTCG 58.574 43.478 10.97 0.22 46.36 3.79
4023 4095 7.493320 CCAGCAAATAAGTTACTATTCGGTGTA 59.507 37.037 0.00 0.00 26.81 2.90
4094 4166 2.423660 CCTGAGGTCCTACCAGGAGTAG 60.424 59.091 18.18 0.00 46.90 2.57
4263 4335 1.134580 ACTCCGCTAGTAGTCGCTACA 60.135 52.381 15.98 5.10 39.22 2.74
4386 4458 5.072736 AGGGTCAGATAATGCTTCATGATCA 59.927 40.000 0.00 0.00 34.89 2.92
4391 4463 3.718434 TCCAGGGTCAGATAATGCTTCAT 59.282 43.478 0.00 0.00 0.00 2.57
4476 4548 6.812879 TCTGATCGAGTAGTACTTGTTTCA 57.187 37.500 15.80 16.83 31.48 2.69
4601 4673 4.365514 TCAGGGCATTCTGTCTTTACAA 57.634 40.909 0.00 0.00 34.49 2.41
4644 4716 1.734465 GGAACTGAGCCAACTTCATCG 59.266 52.381 0.00 0.00 0.00 3.84
4708 4780 2.556144 TCAACTTGATGCTGCTGTCT 57.444 45.000 0.00 0.00 0.00 3.41
4725 4797 4.346127 CAGGAGTTCACAGATCCCATATCA 59.654 45.833 0.00 0.00 33.30 2.15
4749 4821 9.645059 CTATCATCTTCTGAAACTGAAACACTA 57.355 33.333 5.87 0.00 37.44 2.74
4776 4848 1.372582 TCGAAATGAGGCTGACATGC 58.627 50.000 0.00 0.00 0.00 4.06
4978 5050 3.729526 AGACGCAATTCAGTTTGATCG 57.270 42.857 0.00 0.00 0.00 3.69
5079 5160 2.229784 CAGAAACAGAGGAACCCAATGC 59.770 50.000 0.00 0.00 0.00 3.56
5080 5161 3.754965 TCAGAAACAGAGGAACCCAATG 58.245 45.455 0.00 0.00 0.00 2.82
5085 5173 6.207417 TCATCAATTTCAGAAACAGAGGAACC 59.793 38.462 9.94 0.00 0.00 3.62
5126 5214 2.771089 CAGCCTGAGCAGTTTCAGTAA 58.229 47.619 0.00 0.00 42.41 2.24
5127 5215 1.609061 GCAGCCTGAGCAGTTTCAGTA 60.609 52.381 0.00 0.00 42.41 2.74
5145 5233 2.449031 ATTGTCCGAACAGAGCCGCA 62.449 55.000 0.00 0.00 36.57 5.69
5146 5234 1.741770 ATTGTCCGAACAGAGCCGC 60.742 57.895 0.00 0.00 36.57 6.53
5156 5244 4.467084 GGGAGCGCCATTGTCCGA 62.467 66.667 9.31 0.00 35.15 4.55
5162 5250 0.753262 CTGTACTAGGGAGCGCCATT 59.247 55.000 9.31 0.00 35.15 3.16
5201 5289 2.159421 TGATCAACGGAGTAGAAGCGTC 60.159 50.000 0.00 0.00 45.00 5.19
5215 5303 7.983307 AGTAGAAATCTCAAATGCTGATCAAC 58.017 34.615 0.00 0.00 32.14 3.18
5217 5305 9.102757 GTTAGTAGAAATCTCAAATGCTGATCA 57.897 33.333 0.00 0.00 32.14 2.92
5218 5306 9.323985 AGTTAGTAGAAATCTCAAATGCTGATC 57.676 33.333 0.00 0.00 32.14 2.92
5219 5307 9.107177 CAGTTAGTAGAAATCTCAAATGCTGAT 57.893 33.333 0.00 0.00 32.14 2.90
5220 5308 8.097038 ACAGTTAGTAGAAATCTCAAATGCTGA 58.903 33.333 0.00 0.00 0.00 4.26
5221 5309 8.261492 ACAGTTAGTAGAAATCTCAAATGCTG 57.739 34.615 0.00 0.00 0.00 4.41
5227 5315 8.922676 CGCTTAAACAGTTAGTAGAAATCTCAA 58.077 33.333 0.00 0.00 0.00 3.02
5228 5316 8.301720 TCGCTTAAACAGTTAGTAGAAATCTCA 58.698 33.333 0.00 0.00 0.00 3.27
5229 5317 8.684973 TCGCTTAAACAGTTAGTAGAAATCTC 57.315 34.615 0.00 0.00 0.00 2.75
5230 5318 9.303537 GATCGCTTAAACAGTTAGTAGAAATCT 57.696 33.333 0.00 0.00 0.00 2.40
5231 5319 9.084164 TGATCGCTTAAACAGTTAGTAGAAATC 57.916 33.333 0.00 0.00 0.00 2.17
5232 5320 8.997621 TGATCGCTTAAACAGTTAGTAGAAAT 57.002 30.769 0.00 0.00 0.00 2.17
5236 5324 5.805486 TGCTGATCGCTTAAACAGTTAGTAG 59.195 40.000 10.16 0.00 40.11 2.57
5237 5325 5.716094 TGCTGATCGCTTAAACAGTTAGTA 58.284 37.500 10.16 0.00 40.11 1.82
5238 5326 4.566004 TGCTGATCGCTTAAACAGTTAGT 58.434 39.130 10.16 0.00 40.11 2.24
5248 5361 5.819379 AGAAATCTCAAATGCTGATCGCTTA 59.181 36.000 10.16 0.00 40.11 3.09
5253 5366 7.325660 TGGTTAGAAATCTCAAATGCTGATC 57.674 36.000 0.00 0.00 32.14 2.92
5256 5369 7.541162 TCAATGGTTAGAAATCTCAAATGCTG 58.459 34.615 0.00 0.00 0.00 4.41
5265 5378 6.240549 ACGGAGATCAATGGTTAGAAATCT 57.759 37.500 0.00 0.00 0.00 2.40
5288 5401 1.272480 TGAGGAGAGTCATGAACCCGA 60.272 52.381 0.00 0.00 0.00 5.14
5313 5426 4.712337 AGTATGACTGAAGGAAGGGTACAG 59.288 45.833 0.00 0.00 35.14 2.74
5340 5453 9.863845 CTCAAAAACTCAAAAAGGTAAAAGGTA 57.136 29.630 0.00 0.00 0.00 3.08
5341 5454 7.333423 GCTCAAAAACTCAAAAAGGTAAAAGGT 59.667 33.333 0.00 0.00 0.00 3.50
5344 5457 8.716909 CAAGCTCAAAAACTCAAAAAGGTAAAA 58.283 29.630 0.00 0.00 0.00 1.52
5348 5461 5.793817 ACAAGCTCAAAAACTCAAAAAGGT 58.206 33.333 0.00 0.00 0.00 3.50
5349 5462 8.330302 CAATACAAGCTCAAAAACTCAAAAAGG 58.670 33.333 0.00 0.00 0.00 3.11
5350 5463 8.872845 ACAATACAAGCTCAAAAACTCAAAAAG 58.127 29.630 0.00 0.00 0.00 2.27
5351 5464 8.770438 ACAATACAAGCTCAAAAACTCAAAAA 57.230 26.923 0.00 0.00 0.00 1.94
5352 5465 8.655092 CAACAATACAAGCTCAAAAACTCAAAA 58.345 29.630 0.00 0.00 0.00 2.44
5353 5466 7.201513 GCAACAATACAAGCTCAAAAACTCAAA 60.202 33.333 0.00 0.00 0.00 2.69
5354 5467 6.255453 GCAACAATACAAGCTCAAAAACTCAA 59.745 34.615 0.00 0.00 0.00 3.02
5355 5468 5.748152 GCAACAATACAAGCTCAAAAACTCA 59.252 36.000 0.00 0.00 0.00 3.41
5356 5469 5.748152 TGCAACAATACAAGCTCAAAAACTC 59.252 36.000 0.00 0.00 0.00 3.01
5357 5470 5.659463 TGCAACAATACAAGCTCAAAAACT 58.341 33.333 0.00 0.00 0.00 2.66
5358 5471 5.519927 ACTGCAACAATACAAGCTCAAAAAC 59.480 36.000 0.00 0.00 0.00 2.43
5359 5472 5.659463 ACTGCAACAATACAAGCTCAAAAA 58.341 33.333 0.00 0.00 0.00 1.94
5402 5515 7.468084 GCTGATTACAACTAAGGTTCAACACAA 60.468 37.037 0.00 0.00 32.73 3.33
5430 5543 6.201997 ACCGTTTATTTTTGCATTTTCTCCAC 59.798 34.615 0.00 0.00 0.00 4.02
5431 5544 6.284459 ACCGTTTATTTTTGCATTTTCTCCA 58.716 32.000 0.00 0.00 0.00 3.86
5432 5545 6.779115 ACCGTTTATTTTTGCATTTTCTCC 57.221 33.333 0.00 0.00 0.00 3.71
5439 5552 8.286097 CCAACATTTTACCGTTTATTTTTGCAT 58.714 29.630 0.00 0.00 0.00 3.96
5440 5553 7.630924 CCAACATTTTACCGTTTATTTTTGCA 58.369 30.769 0.00 0.00 0.00 4.08
5453 5566 1.732405 GCTCAGCGCCAACATTTTACC 60.732 52.381 2.29 0.00 0.00 2.85
5467 5580 3.809832 TCTTGCCTATTTTATCGCTCAGC 59.190 43.478 0.00 0.00 0.00 4.26
5468 5581 4.212214 GGTCTTGCCTATTTTATCGCTCAG 59.788 45.833 0.00 0.00 0.00 3.35
5469 5582 4.127171 GGTCTTGCCTATTTTATCGCTCA 58.873 43.478 0.00 0.00 0.00 4.26
5470 5583 4.127171 TGGTCTTGCCTATTTTATCGCTC 58.873 43.478 0.00 0.00 38.35 5.03
5471 5584 4.150897 TGGTCTTGCCTATTTTATCGCT 57.849 40.909 0.00 0.00 38.35 4.93
5472 5585 4.893424 TTGGTCTTGCCTATTTTATCGC 57.107 40.909 0.00 0.00 38.35 4.58
5473 5586 6.912591 GTGATTTGGTCTTGCCTATTTTATCG 59.087 38.462 0.00 0.00 38.35 2.92
5474 5587 7.917505 CAGTGATTTGGTCTTGCCTATTTTATC 59.082 37.037 0.00 0.00 38.35 1.75
5475 5588 7.615365 TCAGTGATTTGGTCTTGCCTATTTTAT 59.385 33.333 0.00 0.00 38.35 1.40
5476 5589 6.945435 TCAGTGATTTGGTCTTGCCTATTTTA 59.055 34.615 0.00 0.00 38.35 1.52
5477 5590 5.774690 TCAGTGATTTGGTCTTGCCTATTTT 59.225 36.000 0.00 0.00 38.35 1.82
5478 5591 5.324409 TCAGTGATTTGGTCTTGCCTATTT 58.676 37.500 0.00 0.00 38.35 1.40
5479 5592 4.922206 TCAGTGATTTGGTCTTGCCTATT 58.078 39.130 0.00 0.00 38.35 1.73
5480 5593 4.574674 TCAGTGATTTGGTCTTGCCTAT 57.425 40.909 0.00 0.00 38.35 2.57
5481 5594 4.574674 ATCAGTGATTTGGTCTTGCCTA 57.425 40.909 0.00 0.00 38.35 3.93
5482 5595 2.957402 TCAGTGATTTGGTCTTGCCT 57.043 45.000 0.00 0.00 38.35 4.75
5483 5596 4.142381 GGTTATCAGTGATTTGGTCTTGCC 60.142 45.833 11.68 0.00 37.90 4.52
5484 5597 4.142381 GGGTTATCAGTGATTTGGTCTTGC 60.142 45.833 11.68 0.00 0.00 4.01
5485 5598 5.009631 TGGGTTATCAGTGATTTGGTCTTG 58.990 41.667 11.68 0.00 0.00 3.02
5486 5599 5.010282 GTGGGTTATCAGTGATTTGGTCTT 58.990 41.667 11.68 0.00 0.00 3.01
5487 5600 4.042809 TGTGGGTTATCAGTGATTTGGTCT 59.957 41.667 11.68 0.00 0.00 3.85
5488 5601 4.331968 TGTGGGTTATCAGTGATTTGGTC 58.668 43.478 11.68 0.00 0.00 4.02
5489 5602 4.380843 TGTGGGTTATCAGTGATTTGGT 57.619 40.909 11.68 0.00 0.00 3.67
5490 5603 5.920193 ATTGTGGGTTATCAGTGATTTGG 57.080 39.130 11.68 0.00 0.00 3.28
5491 5604 6.919662 GCATATTGTGGGTTATCAGTGATTTG 59.080 38.462 11.68 0.00 0.00 2.32
5492 5605 6.835488 AGCATATTGTGGGTTATCAGTGATTT 59.165 34.615 11.68 0.00 0.00 2.17
5493 5606 6.367983 AGCATATTGTGGGTTATCAGTGATT 58.632 36.000 11.68 0.00 0.00 2.57
5494 5607 5.945310 AGCATATTGTGGGTTATCAGTGAT 58.055 37.500 11.12 11.12 0.00 3.06
5495 5608 5.372343 AGCATATTGTGGGTTATCAGTGA 57.628 39.130 0.00 0.00 0.00 3.41
5496 5609 5.470098 GGTAGCATATTGTGGGTTATCAGTG 59.530 44.000 0.00 0.00 0.00 3.66
5497 5610 5.621193 GGTAGCATATTGTGGGTTATCAGT 58.379 41.667 0.00 0.00 0.00 3.41
5498 5611 4.690748 CGGTAGCATATTGTGGGTTATCAG 59.309 45.833 0.00 0.00 0.00 2.90
5499 5612 4.637276 CGGTAGCATATTGTGGGTTATCA 58.363 43.478 0.00 0.00 0.00 2.15
5500 5613 3.435671 GCGGTAGCATATTGTGGGTTATC 59.564 47.826 0.00 0.00 44.35 1.75
5501 5614 3.408634 GCGGTAGCATATTGTGGGTTAT 58.591 45.455 0.00 0.00 44.35 1.89
5502 5615 2.841215 GCGGTAGCATATTGTGGGTTA 58.159 47.619 0.00 0.00 44.35 2.85
5503 5616 1.675552 GCGGTAGCATATTGTGGGTT 58.324 50.000 0.00 0.00 44.35 4.11
5504 5617 3.396951 GCGGTAGCATATTGTGGGT 57.603 52.632 0.00 0.00 44.35 4.51
5515 5628 1.234615 TGCCAAGAAACTGCGGTAGC 61.235 55.000 0.00 0.00 45.41 3.58
5516 5629 0.517316 GTGCCAAGAAACTGCGGTAG 59.483 55.000 0.00 0.00 0.00 3.18
5517 5630 0.887387 GGTGCCAAGAAACTGCGGTA 60.887 55.000 0.00 0.00 0.00 4.02
5518 5631 2.193536 GGTGCCAAGAAACTGCGGT 61.194 57.895 0.00 0.00 0.00 5.68
5519 5632 2.133742 CTGGTGCCAAGAAACTGCGG 62.134 60.000 0.00 0.00 0.00 5.69
5520 5633 1.283793 CTGGTGCCAAGAAACTGCG 59.716 57.895 0.00 0.00 0.00 5.18
5521 5634 1.604604 TACTGGTGCCAAGAAACTGC 58.395 50.000 0.00 0.00 0.00 4.40
5522 5635 2.416547 CGATACTGGTGCCAAGAAACTG 59.583 50.000 0.00 0.00 0.00 3.16
5523 5636 2.038557 ACGATACTGGTGCCAAGAAACT 59.961 45.455 0.00 0.00 0.00 2.66
5524 5637 2.423577 ACGATACTGGTGCCAAGAAAC 58.576 47.619 0.00 0.00 0.00 2.78
5525 5638 2.811431 CAACGATACTGGTGCCAAGAAA 59.189 45.455 0.00 0.00 0.00 2.52
5526 5639 2.422597 CAACGATACTGGTGCCAAGAA 58.577 47.619 0.00 0.00 0.00 2.52
5527 5640 1.943968 GCAACGATACTGGTGCCAAGA 60.944 52.381 0.00 0.00 0.00 3.02
5528 5641 0.447801 GCAACGATACTGGTGCCAAG 59.552 55.000 0.00 0.00 0.00 3.61
5529 5642 0.036164 AGCAACGATACTGGTGCCAA 59.964 50.000 0.00 0.00 0.00 4.52
5530 5643 0.899019 TAGCAACGATACTGGTGCCA 59.101 50.000 0.00 0.00 0.00 4.92
5531 5644 1.933853 CTTAGCAACGATACTGGTGCC 59.066 52.381 0.00 0.00 0.00 5.01
5532 5645 1.327764 GCTTAGCAACGATACTGGTGC 59.672 52.381 0.00 0.00 0.00 5.01
5533 5646 2.604914 CAGCTTAGCAACGATACTGGTG 59.395 50.000 7.07 0.00 0.00 4.17
5534 5647 2.233922 ACAGCTTAGCAACGATACTGGT 59.766 45.455 7.07 0.00 0.00 4.00
5535 5648 2.893637 ACAGCTTAGCAACGATACTGG 58.106 47.619 7.07 0.00 0.00 4.00
5536 5649 4.152402 ACAAACAGCTTAGCAACGATACTG 59.848 41.667 7.07 0.00 0.00 2.74
5537 5650 4.315803 ACAAACAGCTTAGCAACGATACT 58.684 39.130 7.07 0.00 0.00 2.12
5538 5651 4.663636 ACAAACAGCTTAGCAACGATAC 57.336 40.909 7.07 0.00 0.00 2.24
5539 5652 6.978343 AATACAAACAGCTTAGCAACGATA 57.022 33.333 7.07 0.00 0.00 2.92
5540 5653 5.880054 AATACAAACAGCTTAGCAACGAT 57.120 34.783 7.07 0.00 0.00 3.73
5541 5654 6.978343 ATAATACAAACAGCTTAGCAACGA 57.022 33.333 7.07 0.00 0.00 3.85
5542 5655 7.748683 TGAAATAATACAAACAGCTTAGCAACG 59.251 33.333 7.07 0.00 0.00 4.10
5543 5656 8.964420 TGAAATAATACAAACAGCTTAGCAAC 57.036 30.769 7.07 0.00 0.00 4.17
5544 5657 8.792633 ACTGAAATAATACAAACAGCTTAGCAA 58.207 29.630 7.07 0.00 0.00 3.91
5545 5658 8.335532 ACTGAAATAATACAAACAGCTTAGCA 57.664 30.769 7.07 0.00 0.00 3.49
5589 5702 8.228464 CGTTCTTTTTCCTCACTCTTTATTACC 58.772 37.037 0.00 0.00 0.00 2.85
5631 5747 7.625553 CATAAGCTACTGAGTACAAGATTTGC 58.374 38.462 0.00 0.00 0.00 3.68
5647 5763 6.581542 CAGTGTTATAGTACCGCATAAGCTAC 59.418 42.308 0.00 0.00 39.10 3.58
5648 5764 6.263842 ACAGTGTTATAGTACCGCATAAGCTA 59.736 38.462 0.00 0.00 39.10 3.32
5649 5765 5.068723 ACAGTGTTATAGTACCGCATAAGCT 59.931 40.000 0.00 0.00 39.10 3.74
5650 5766 5.287226 ACAGTGTTATAGTACCGCATAAGC 58.713 41.667 0.00 0.00 37.42 3.09
5651 5767 9.125906 GATTACAGTGTTATAGTACCGCATAAG 57.874 37.037 0.00 0.00 0.00 1.73
5652 5768 8.631797 TGATTACAGTGTTATAGTACCGCATAA 58.368 33.333 0.00 0.00 0.00 1.90
5654 5770 7.046292 TGATTACAGTGTTATAGTACCGCAT 57.954 36.000 0.00 0.00 0.00 4.73
5655 5771 6.453926 TGATTACAGTGTTATAGTACCGCA 57.546 37.500 0.00 0.00 0.00 5.69
5656 5772 7.754027 CCTATGATTACAGTGTTATAGTACCGC 59.246 40.741 0.00 0.00 0.00 5.68
5657 5773 8.790718 ACCTATGATTACAGTGTTATAGTACCG 58.209 37.037 0.00 0.00 0.00 4.02
5697 5813 9.811995 AGCAATAGTTATTTTGTCGACATAGTA 57.188 29.630 20.80 12.89 0.00 1.82
5698 5814 8.718102 AGCAATAGTTATTTTGTCGACATAGT 57.282 30.769 20.80 13.98 0.00 2.12
5699 5815 8.276325 GGAGCAATAGTTATTTTGTCGACATAG 58.724 37.037 20.80 0.56 0.00 2.23
5700 5816 7.766738 TGGAGCAATAGTTATTTTGTCGACATA 59.233 33.333 20.80 12.38 0.00 2.29
5701 5817 6.597672 TGGAGCAATAGTTATTTTGTCGACAT 59.402 34.615 20.80 7.28 0.00 3.06
5702 5818 5.935206 TGGAGCAATAGTTATTTTGTCGACA 59.065 36.000 15.76 15.76 0.00 4.35
5703 5819 6.417191 TGGAGCAATAGTTATTTTGTCGAC 57.583 37.500 9.11 9.11 0.00 4.20
5704 5820 6.653320 ACTTGGAGCAATAGTTATTTTGTCGA 59.347 34.615 0.00 0.00 0.00 4.20
5705 5821 6.842163 ACTTGGAGCAATAGTTATTTTGTCG 58.158 36.000 0.00 0.00 0.00 4.35
5707 5823 8.409358 AAGACTTGGAGCAATAGTTATTTTGT 57.591 30.769 0.00 0.00 0.00 2.83
5765 5917 9.956720 CATCTTTCTCTAGAAAAACAACAACAT 57.043 29.630 6.61 0.00 42.72 2.71
5766 5918 9.173021 TCATCTTTCTCTAGAAAAACAACAACA 57.827 29.630 6.61 0.00 42.72 3.33
5795 5947 2.355756 ACTTAGCATGCGCATTAAGTGG 59.644 45.455 31.93 18.88 37.58 4.00
5799 5951 2.097304 CCACACTTAGCATGCGCATTAA 59.903 45.455 22.81 16.65 42.27 1.40
5806 5958 0.659957 GCTAGCCACACTTAGCATGC 59.340 55.000 10.51 10.51 35.76 4.06
5811 5963 5.238583 AGTAAACAAGCTAGCCACACTTAG 58.761 41.667 12.13 0.00 0.00 2.18
5818 5970 6.709018 AAAAAGAAGTAAACAAGCTAGCCA 57.291 33.333 12.13 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.