AutoCloner

Multiple sequence alignment - TraesCS3A01G302500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G302500	chr3A	100.000	3786	0	0	1	3786	535823413	535827198	0.000000e+00	6992.0
1	TraesCS3A01G302500	chr3A	95.163	1013	49	0	2774	3786	265055148	265054136	0.000000e+00	1600.0
2	TraesCS3A01G302500	chr3A	94.499	1018	55	1	2770	3786	254647961	254646944	0.000000e+00	1568.0
3	TraesCS3A01G302500	chr3A	94.565	1012	53	2	2776	3786	455702341	455701331	0.000000e+00	1563.0
4	TraesCS3A01G302500	chr3A	94.094	1016	60	0	2771	3786	353979366	353980381	0.000000e+00	1544.0
5	TraesCS3A01G302500	chr3D	94.937	2765	69	20	1	2740	414629742	414627024	0.000000e+00	4265.0
6	TraesCS3A01G302500	chr3B	94.612	2784	73	26	1	2764	540457292	540454566	0.000000e+00	4239.0
7	TraesCS3A01G302500	chr2A	94.955	1011	50	1	2776	3786	478579084	478578075	0.000000e+00	1583.0
8	TraesCS3A01G302500	chr2A	93.984	1014	60	1	2774	3786	478586844	478585831	0.000000e+00	1533.0
9	TraesCS3A01G302500	chr2A	82.124	386	57	11	119	501	648027660	648027284	1.700000e-83	320.0
10	TraesCS3A01G302500	chr4A	94.477	1014	54	2	2774	3786	551067299	551068311	0.000000e+00	1561.0
11	TraesCS3A01G302500	chr5A	94.083	1014	58	2	2773	3786	495849401	495850412	0.000000e+00	1539.0
12	TraesCS3A01G302500	chr6A	93.978	1013	60	1	2774	3786	102820612	102821623	0.000000e+00	1531.0
13	TraesCS3A01G302500	chr1D	86.141	368	51	0	106	473	470081479	470081112	7.620000e-107	398.0
14	TraesCS3A01G302500	chr1D	76.821	151	27	7	1758	1901	155736961	155736812	1.130000e-10	78.7
15	TraesCS3A01G302500	chr1A	81.524	433	72	5	41	472	563791838	563791413	2.160000e-92	350.0
16	TraesCS3A01G302500	chr1A	77.844	167	29	6	1742	1901	185117755	185117920	3.110000e-16	97.1
17	TraesCS3A01G302500	chr1B	83.784	370	51	7	106	472	652468108	652467745	3.620000e-90	342.0
18	TraesCS3A01G302500	chr1B	80.787	432	77	5	41	472	652570406	652569981	2.180000e-87	333.0
19	TraesCS3A01G302500	chr1B	78.710	155	24	7	1742	1889	236953778	236953930	1.120000e-15	95.3
20	TraesCS3A01G302500	chr2D	82.812	384	58	5	119	501	502574576	502574200	1.680000e-88	337.0
21	TraesCS3A01G302500	chr2B	81.771	384	62	6	119	501	590228818	590228442	7.890000e-82	315.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G302500	chr3A	535823413	535827198	3785	False	6992	6992	100.000	1	3786	1	chr3A.!!$F2	3785
1	TraesCS3A01G302500	chr3A	265054136	265055148	1012	True	1600	1600	95.163	2774	3786	1	chr3A.!!$R2	1012
2	TraesCS3A01G302500	chr3A	254646944	254647961	1017	True	1568	1568	94.499	2770	3786	1	chr3A.!!$R1	1016
3	TraesCS3A01G302500	chr3A	455701331	455702341	1010	True	1563	1563	94.565	2776	3786	1	chr3A.!!$R3	1010
4	TraesCS3A01G302500	chr3A	353979366	353980381	1015	False	1544	1544	94.094	2771	3786	1	chr3A.!!$F1	1015
5	TraesCS3A01G302500	chr3D	414627024	414629742	2718	True	4265	4265	94.937	1	2740	1	chr3D.!!$R1	2739
6	TraesCS3A01G302500	chr3B	540454566	540457292	2726	True	4239	4239	94.612	1	2764	1	chr3B.!!$R1	2763
7	TraesCS3A01G302500	chr2A	478578075	478579084	1009	True	1583	1583	94.955	2776	3786	1	chr2A.!!$R1	1010
8	TraesCS3A01G302500	chr2A	478585831	478586844	1013	True	1533	1533	93.984	2774	3786	1	chr2A.!!$R2	1012
9	TraesCS3A01G302500	chr4A	551067299	551068311	1012	False	1561	1561	94.477	2774	3786	1	chr4A.!!$F1	1012
10	TraesCS3A01G302500	chr5A	495849401	495850412	1011	False	1539	1539	94.083	2773	3786	1	chr5A.!!$F1	1013
11	TraesCS3A01G302500	chr6A	102820612	102821623	1011	False	1531	1531	93.978	2774	3786	1	chr6A.!!$F1	1012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
633	640	0.615261	GGAGTTTCGAGGAGAGGGGT	60.615	60.0	0.00	0.00	4.95	F
1091	1127	0.178950	ACTCTCCTGTCTGTCCTGCA	60.179	55.0	0.00	0.00	4.41	F
1092	1128	0.246086	CTCTCCTGTCTGTCCTGCAC	59.754	60.0	0.00	0.00	4.57	F
2192	2242	0.460987	GATACTTCAGCCAGCGCACT	60.461	55.0	11.47	37.52	4.40	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1443	1482	0.389757	GGCTTACGATGGAGGAGTCC	59.610	60.0	0.00	0.00	44.24	3.85	R
2676	2728	0.464036	TCCTGGATCATGGCGTGTAC	59.536	55.0	6.60	2.28	0.00	2.90	R
2678	2730	0.548031	ATTCCTGGATCATGGCGTGT	59.452	50.0	6.60	0.00	0.00	4.49	R
3107	3160	0.036388	ATGTCACGCGGTGATTTCCT	60.036	50.0	12.47	0.00	44.63	3.36	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
159	160	3.003763	GGAGGGAGCCTGACGGTT	61.004	66.667	0.00	0.00	31.76	4.44
517	518	3.182967	GTTCCTGCGAGAATACTCAGTG	58.817	50.000	0.00	0.00	42.72	3.66
595	602	4.096003	ACGGTTCAGCGGATGGGG	62.096	66.667	3.13	0.00	0.00	4.96
621	628	1.165270	CATTCCACCACCGGAGTTTC	58.835	55.000	9.46	0.00	36.12	2.78
632	639	1.668101	CGGAGTTTCGAGGAGAGGGG	61.668	65.000	0.00	0.00	0.00	4.79
633	640	0.615261	GGAGTTTCGAGGAGAGGGGT	60.615	60.000	0.00	0.00	0.00	4.95
668	675	2.835431	CGGATCTCAGAGGCGGGT	60.835	66.667	0.00	0.00	0.00	5.28
697	704	2.735772	ATAGGCTGGTGGCGGAGTG	61.736	63.158	0.00	0.00	44.18	3.51
825	834	4.400961	AAGGTCTGCTCTGCCGGC	62.401	66.667	22.73	22.73	0.00	6.13
856	865	1.607148	GGTGTCACCAAAGTGTAAGGC	59.393	52.381	17.59	0.00	44.83	4.35
857	866	1.607148	GTGTCACCAAAGTGTAAGGCC	59.393	52.381	0.00	0.00	44.83	5.19
858	867	1.213182	TGTCACCAAAGTGTAAGGCCA	59.787	47.619	5.01	0.00	44.83	5.36
859	868	2.158534	TGTCACCAAAGTGTAAGGCCAT	60.159	45.455	5.01	0.00	44.83	4.40
860	869	2.890945	GTCACCAAAGTGTAAGGCCATT	59.109	45.455	5.01	0.00	44.83	3.16
865	874	3.005367	CCAAAGTGTAAGGCCATTTTCGT	59.995	43.478	5.01	0.00	0.00	3.85
1071	1093	1.617947	CCCCTGTTTCTCTCCCTCCG	61.618	65.000	0.00	0.00	0.00	4.63
1086	1122	1.091537	CTCCGACTCTCCTGTCTGTC	58.908	60.000	0.00	0.00	35.00	3.51
1087	1123	0.322636	TCCGACTCTCCTGTCTGTCC	60.323	60.000	0.00	0.00	35.00	4.02
1088	1124	0.322997	CCGACTCTCCTGTCTGTCCT	60.323	60.000	0.00	0.00	35.00	3.85
1089	1125	0.808125	CGACTCTCCTGTCTGTCCTG	59.192	60.000	0.00	0.00	35.00	3.86
1090	1126	0.530288	GACTCTCCTGTCTGTCCTGC	59.470	60.000	0.00	0.00	34.39	4.85
1091	1127	0.178950	ACTCTCCTGTCTGTCCTGCA	60.179	55.000	0.00	0.00	0.00	4.41
1092	1128	0.246086	CTCTCCTGTCTGTCCTGCAC	59.754	60.000	0.00	0.00	0.00	4.57
1093	1129	0.469892	TCTCCTGTCTGTCCTGCACA	60.470	55.000	0.00	0.00	0.00	4.57
1155	1191	4.901123	TGCGGTGGTGGTCGTGTG	62.901	66.667	0.00	0.00	0.00	3.82
1504	1543	1.298863	CACAGCAACAGCAGCACAC	60.299	57.895	0.00	0.00	0.00	3.82
1508	1547	2.328989	CAACAGCAGCACACACGG	59.671	61.111	0.00	0.00	0.00	4.94
1516	1555	1.925946	GCAGCACACACGGTTGAATTC	60.926	52.381	0.00	0.00	0.00	2.17
1521	1560	3.564511	CACACACGGTTGAATTCATTCC	58.435	45.455	9.40	13.48	35.97	3.01
1526	1565	2.742053	ACGGTTGAATTCATTCCTGACG	59.258	45.455	20.45	14.45	35.97	4.35
1711	1750	3.680786	CACCTCGGCGACCAGACA	61.681	66.667	4.99	0.00	0.00	3.41
2084	2134	1.079405	GGTCATCAACGGCGAGGAA	60.079	57.895	16.62	0.00	0.00	3.36
2192	2242	0.460987	GATACTTCAGCCAGCGCACT	60.461	55.000	11.47	0.00	37.52	4.40
2216	2266	2.048601	GCTCATCCAGCTCGAGGAT	58.951	57.895	15.58	6.72	46.61	3.24
2240	2290	2.169789	CCTGCTCCGCATGAAGTCG	61.170	63.158	0.00	0.00	38.13	4.18
2564	2616	2.536365	CTCGCGGTAGTGCTAATTTGA	58.464	47.619	6.13	0.00	0.00	2.69
2603	2655	5.123227	TCCAAGGACATCGAAATCCATTAC	58.877	41.667	17.89	0.00	37.47	1.89
2676	2728	4.488126	TCTTCTTTCAACCAATCGCAAG	57.512	40.909	0.00	0.00	0.00	4.01
2677	2729	3.882888	TCTTCTTTCAACCAATCGCAAGT	59.117	39.130	0.00	0.00	39.48	3.16
2678	2730	5.060506	TCTTCTTTCAACCAATCGCAAGTA	58.939	37.500	0.00	0.00	39.48	2.24
2679	2731	4.742438	TCTTTCAACCAATCGCAAGTAC	57.258	40.909	0.00	0.00	39.48	2.73
2767	2819	9.955208	CTATGAAGTAGCATTGCATAAATTGAA	57.045	29.630	11.91	0.00	0.00	2.69
2768	2820	8.867112	ATGAAGTAGCATTGCATAAATTGAAG	57.133	30.769	11.91	0.00	0.00	3.02
2779	2831	7.036996	TGCATAAATTGAAGTTGTTGTCAGA	57.963	32.000	0.00	0.00	0.00	3.27
2837	2889	1.334869	CTTCATATCACTTTGCGGCCC	59.665	52.381	0.00	0.00	0.00	5.80
2851	2903	1.172180	CGGCCCCACGCATGATATTT	61.172	55.000	0.00	0.00	40.31	1.40
2852	2904	1.039856	GGCCCCACGCATGATATTTT	58.960	50.000	0.00	0.00	40.31	1.82
2861	2913	2.354510	CGCATGATATTTTCACGGGTGT	59.645	45.455	0.00	0.00	37.11	4.16
2869	2921	3.495434	TTTTCACGGGTGTCACCTTAT	57.505	42.857	21.40	4.78	38.64	1.73
2870	2922	3.495434	TTTCACGGGTGTCACCTTATT	57.505	42.857	21.40	1.00	38.64	1.40
2960	3013	2.279517	CGGGCCGACATGACTAGC	60.280	66.667	24.41	0.00	0.00	3.42
3055	3108	0.811616	GTGAATCCGGGCTGTAGCAG	60.812	60.000	0.00	0.00	44.36	4.24
3093	3146	2.590092	GAACCCGGGCTGTAGCAT	59.410	61.111	24.08	0.00	44.36	3.79
3107	3160	1.410517	GTAGCATGCTAGCAGGACTCA	59.589	52.381	32.02	10.65	36.85	3.41
3112	3165	1.644509	TGCTAGCAGGACTCAGGAAA	58.355	50.000	14.93	0.00	0.00	3.13
3204	3257	0.622136	TCCGGAGCAGTAGTACTGGA	59.378	55.000	27.48	15.50	46.01	3.86
3305	3358	5.250774	AGAGAGGCTACCAAGGATAAACAAA	59.749	40.000	0.00	0.00	0.00	2.83
3384	3437	6.511605	GCTCGATATGTGCAAATACAACATGA	60.512	38.462	0.00	0.00	37.06	3.07
3667	3721	1.135859	GGCGTCTCTCTGCAAAACATG	60.136	52.381	0.00	0.00	0.00	3.21
3674	3728	6.091305	CGTCTCTCTGCAAAACATGAAATAGA	59.909	38.462	0.00	0.00	0.00	1.98

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
517	518	1.202580	CGATGAACCAGGATCTCACCC	60.203	57.143	0.00	0.00	0.00	4.61
595	602	0.675522	CGGTGGTGGAATGGTGGTAC	60.676	60.000	0.00	0.00	0.00	3.34
621	628	1.000486	TTCCTCACCCCTCTCCTCG	60.000	63.158	0.00	0.00	0.00	4.63
632	639	0.530870	GGTATGCGCCTCTTCCTCAC	60.531	60.000	4.18	0.00	0.00	3.51
633	640	1.823295	GGTATGCGCCTCTTCCTCA	59.177	57.895	4.18	0.00	0.00	3.86
837	846	1.607148	GGCCTTACACTTTGGTGACAC	59.393	52.381	0.00	0.00	45.61	3.67
842	851	3.005367	CGAAAATGGCCTTACACTTTGGT	59.995	43.478	3.32	0.00	0.00	3.67
843	852	3.005367	ACGAAAATGGCCTTACACTTTGG	59.995	43.478	3.32	0.00	0.00	3.28
844	853	3.980775	CACGAAAATGGCCTTACACTTTG	59.019	43.478	3.32	0.00	0.00	2.77
845	854	3.886505	TCACGAAAATGGCCTTACACTTT	59.113	39.130	3.32	0.00	0.00	2.66
846	855	3.482436	TCACGAAAATGGCCTTACACTT	58.518	40.909	3.32	0.00	0.00	3.16
847	856	3.134574	TCACGAAAATGGCCTTACACT	57.865	42.857	3.32	0.00	0.00	3.55
848	857	3.907894	TTCACGAAAATGGCCTTACAC	57.092	42.857	3.32	0.00	0.00	2.90
858	867	0.108851	GCGGCCCATTTCACGAAAAT	60.109	50.000	0.00	0.00	38.11	1.82
859	868	1.287503	GCGGCCCATTTCACGAAAA	59.712	52.632	0.00	0.00	33.56	2.29
860	869	2.958576	GCGGCCCATTTCACGAAA	59.041	55.556	0.00	0.00	34.46	3.46
965	978	0.393077	AGGAATTAGTGGATCCCGCG	59.607	55.000	9.90	0.00	39.30	6.46
1071	1093	0.530288	GCAGGACAGACAGGAGAGTC	59.470	60.000	0.00	0.00	38.81	3.36
1155	1191	1.817099	CGGGCACAGCTTCCTCATC	60.817	63.158	0.00	0.00	0.00	2.92
1443	1482	0.389757	GGCTTACGATGGAGGAGTCC	59.610	60.000	0.00	0.00	44.24	3.85
1504	1543	3.424829	CGTCAGGAATGAATTCAACCGTG	60.425	47.826	13.09	16.88	38.53	4.94
1508	1547	2.774007	CGCGTCAGGAATGAATTCAAC	58.226	47.619	13.09	9.59	38.53	3.18
1516	1555	2.860628	GCTACGCGCGTCAGGAATG	61.861	63.158	41.35	20.69	0.00	2.67
2030	2080	1.801913	CGCGTCGGAGAAGAGGTTG	60.802	63.158	0.00	0.00	38.59	3.77
2141	2191	0.739462	GGTGGATGATGTCGAACGCA	60.739	55.000	0.00	0.00	0.00	5.24
2261	2311	3.394274	TGGTCTCCCAAAAGATGTTCTCA	59.606	43.478	0.00	0.00	37.98	3.27
2273	2323	1.002069	ATTCCATGCTGGTCTCCCAA	58.998	50.000	2.68	0.00	41.27	4.12
2291	2341	2.888594	CGGTAGTTGTTGATGACGGAT	58.111	47.619	0.00	0.00	0.00	4.18
2345	2395	3.291167	GAGCGTGACGGCGGTTTTC	62.291	63.158	13.24	0.00	42.89	2.29
2564	2616	6.037726	GTCCTTGGATTAACGTTGTTTGTTT	58.962	36.000	11.99	0.00	0.00	2.83
2603	2655	6.536941	GTCTACAGAAAAGATTAGCCTGGAAG	59.463	42.308	0.00	0.00	0.00	3.46
2676	2728	0.464036	TCCTGGATCATGGCGTGTAC	59.536	55.000	6.60	2.28	0.00	2.90
2677	2729	1.199615	TTCCTGGATCATGGCGTGTA	58.800	50.000	6.60	0.00	0.00	2.90
2678	2730	0.548031	ATTCCTGGATCATGGCGTGT	59.452	50.000	6.60	0.00	0.00	4.49
2679	2731	2.037641	TCTATTCCTGGATCATGGCGTG	59.962	50.000	0.00	0.00	0.00	5.34
2752	2804	8.074474	TGACAACAACTTCAATTTATGCAATG	57.926	30.769	0.00	0.00	0.00	2.82
2754	2806	7.487484	TCTGACAACAACTTCAATTTATGCAA	58.513	30.769	0.00	0.00	0.00	4.08
2756	2808	7.096065	GGTTCTGACAACAACTTCAATTTATGC	60.096	37.037	0.00	0.00	0.00	3.14
2757	2809	7.382218	GGGTTCTGACAACAACTTCAATTTATG	59.618	37.037	0.00	0.00	0.00	1.90
2758	2810	7.287696	AGGGTTCTGACAACAACTTCAATTTAT	59.712	33.333	0.00	0.00	0.00	1.40
2759	2811	6.605594	AGGGTTCTGACAACAACTTCAATTTA	59.394	34.615	0.00	0.00	0.00	1.40
2760	2812	5.422012	AGGGTTCTGACAACAACTTCAATTT	59.578	36.000	0.00	0.00	0.00	1.82
2761	2813	4.956075	AGGGTTCTGACAACAACTTCAATT	59.044	37.500	0.00	0.00	0.00	2.32
2762	2814	4.339247	CAGGGTTCTGACAACAACTTCAAT	59.661	41.667	0.00	0.00	43.49	2.57
2763	2815	3.694072	CAGGGTTCTGACAACAACTTCAA	59.306	43.478	0.00	0.00	43.49	2.69
2764	2816	3.054728	TCAGGGTTCTGACAACAACTTCA	60.055	43.478	0.00	0.00	44.39	3.02
2765	2817	3.541632	TCAGGGTTCTGACAACAACTTC	58.458	45.455	0.00	0.00	44.39	3.01
2766	2818	3.644966	TCAGGGTTCTGACAACAACTT	57.355	42.857	0.00	0.00	44.39	2.66
2779	2831	3.306780	CGGTGTGACTTAAGATCAGGGTT	60.307	47.826	10.09	0.00	0.00	4.11
2789	2841	4.159693	ACATGCTAGATCGGTGTGACTTAA	59.840	41.667	0.00	0.00	0.00	1.85
2837	2889	2.286950	CCCGTGAAAATATCATGCGTGG	60.287	50.000	5.98	0.00	42.68	4.94
2846	2898	3.713826	AGGTGACACCCGTGAAAATAT	57.286	42.857	21.32	0.00	39.75	1.28
2851	2903	3.142951	CAAATAAGGTGACACCCGTGAA	58.857	45.455	21.32	2.86	39.75	3.18
2852	2904	2.551287	CCAAATAAGGTGACACCCGTGA	60.551	50.000	21.32	4.46	39.75	4.35
2861	2913	1.208844	TCCCGGGCCAAATAAGGTGA	61.209	55.000	18.49	0.00	0.00	4.02
2869	2921	4.206943	AAACGGTCCCGGGCCAAA	62.207	61.111	27.00	5.14	44.69	3.28
2870	2922	4.958897	CAAACGGTCCCGGGCCAA	62.959	66.667	27.00	5.51	44.69	4.52
2960	3013	1.826054	TGCCACTTTGGGTTCACGG	60.826	57.895	0.00	0.00	38.19	4.94
3011	3064	3.205338	CTGATGACCGGCATGTTTGATA	58.795	45.455	14.84	0.00	37.34	2.15
3015	3068	2.183409	GCTGATGACCGGCATGTTT	58.817	52.632	14.84	0.00	46.40	2.83
3055	3108	1.222113	GGAGTCCTGTTAGCCCAGC	59.778	63.158	0.41	0.00	0.00	4.85
3093	3146	1.644509	TTTCCTGAGTCCTGCTAGCA	58.355	50.000	18.22	18.22	0.00	3.49
3107	3160	0.036388	ATGTCACGCGGTGATTTCCT	60.036	50.000	12.47	0.00	44.63	3.36
3112	3165	1.024579	GGGAAATGTCACGCGGTGAT	61.025	55.000	12.47	0.00	44.63	3.06
3204	3257	1.823610	GTTTACCGGAGTCCTGCTAGT	59.176	52.381	9.46	0.00	0.00	2.57
3305	3358	3.038280	TGTGTGGGATCCGACAATCTAT	58.962	45.455	28.70	0.00	0.00	1.98
3384	3437	6.992123	TGAGTCATAGAGTTTTGTTGTGATGT	59.008	34.615	0.00	0.00	0.00	3.06
3527	3580	8.862325	TTCTCAGCCTTTTTCATTTGTAGATA	57.138	30.769	0.00	0.00	0.00	1.98
3667	3721	8.280497	ACATTTGTACTCACGTTTGTCTATTTC	58.720	33.333	0.00	0.00	0.00	2.17

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.