Multiple sequence alignment - TraesCS3A01G302000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G302000 chr3A 100.000 5393 0 0 1 5393 535228857 535223465 0.000000e+00 9960.0
1 TraesCS3A01G302000 chr3A 82.658 790 87 28 11 765 588444092 588444866 0.000000e+00 654.0
2 TraesCS3A01G302000 chr3B 93.090 1780 75 19 3645 5393 540729917 540731679 0.000000e+00 2562.0
3 TraesCS3A01G302000 chr3B 95.022 1366 47 9 774 2119 540727618 540728982 0.000000e+00 2126.0
4 TraesCS3A01G302000 chr3B 93.586 686 28 4 2439 3121 540729063 540729735 0.000000e+00 1009.0
5 TraesCS3A01G302000 chr3B 89.703 505 44 2 2557 3061 367487951 367487455 5.890000e-179 638.0
6 TraesCS3A01G302000 chr3B 85.739 568 68 8 1526 2087 367489334 367488774 6.020000e-164 588.0
7 TraesCS3A01G302000 chr3B 79.301 773 101 40 11 765 741575673 741576404 2.260000e-133 486.0
8 TraesCS3A01G302000 chr3B 83.664 453 53 18 1054 1493 367489783 367489339 1.810000e-109 407.0
9 TraesCS3A01G302000 chr3B 90.492 305 20 4 1736 2031 672673786 672673482 1.410000e-105 394.0
10 TraesCS3A01G302000 chr3B 94.301 193 11 0 3330 3522 540729727 540729919 4.080000e-76 296.0
11 TraesCS3A01G302000 chr3B 85.274 292 28 10 3808 4087 770094535 770094823 2.460000e-73 287.0
12 TraesCS3A01G302000 chr3B 84.932 292 29 10 3808 4087 770091125 770091413 1.140000e-71 281.0
13 TraesCS3A01G302000 chr3B 97.692 130 3 0 3518 3647 709011735 709011864 1.950000e-54 224.0
14 TraesCS3A01G302000 chr3B 81.176 85 8 4 955 1031 367489856 367489772 1.620000e-05 62.1
15 TraesCS3A01G302000 chr3D 94.911 1454 41 15 774 2200 414904519 414905966 0.000000e+00 2244.0
16 TraesCS3A01G302000 chr3D 95.402 1305 41 8 3645 4943 414907123 414908414 0.000000e+00 2060.0
17 TraesCS3A01G302000 chr3D 96.144 778 23 7 2345 3121 414906174 414906945 0.000000e+00 1264.0
18 TraesCS3A01G302000 chr3D 81.669 791 82 33 11 766 199540900 199540138 2.780000e-167 599.0
19 TraesCS3A01G302000 chr3D 89.385 358 14 7 5038 5393 414908504 414908839 3.860000e-116 429.0
20 TraesCS3A01G302000 chr3D 93.827 162 8 2 2190 2349 414905987 414906148 5.400000e-60 243.0
21 TraesCS3A01G302000 chr3D 87.565 193 20 2 3330 3522 414906937 414907125 2.530000e-53 220.0
22 TraesCS3A01G302000 chr3D 88.136 59 3 3 2326 2380 394926931 394926989 3.490000e-07 67.6
23 TraesCS3A01G302000 chr3D 97.297 37 1 0 2345 2381 279927759 279927795 4.510000e-06 63.9
24 TraesCS3A01G302000 chr1D 83.764 813 79 20 1 767 249745830 249746635 0.000000e+00 721.0
25 TraesCS3A01G302000 chr1D 82.152 818 81 34 1 769 454555712 454554911 4.550000e-180 641.0
26 TraesCS3A01G302000 chr1D 98.198 222 4 0 3117 3338 315408356 315408577 6.550000e-104 388.0
27 TraesCS3A01G302000 chr1D 100.000 34 0 0 2348 2381 355178953 355178986 4.510000e-06 63.9
28 TraesCS3A01G302000 chr7D 82.971 781 97 27 11 772 86754231 86754994 0.000000e+00 673.0
29 TraesCS3A01G302000 chr7D 85.448 536 49 17 1 522 613867346 613866826 1.030000e-146 531.0
30 TraesCS3A01G302000 chr7D 98.190 221 4 0 3116 3336 62255594 62255374 2.360000e-103 387.0
31 TraesCS3A01G302000 chr7D 85.965 57 7 1 3058 3113 83472827 83472771 5.830000e-05 60.2
32 TraesCS3A01G302000 chr6A 90.347 518 36 7 2544 3061 102112237 102112740 0.000000e+00 667.0
33 TraesCS3A01G302000 chr6A 82.178 808 88 27 1 768 569971728 569970937 1.270000e-180 643.0
34 TraesCS3A01G302000 chr6A 81.032 601 72 32 1518 2087 3276791 3277380 1.780000e-119 440.0
35 TraesCS3A01G302000 chr6A 85.146 377 45 7 1119 1494 102111128 102111494 5.100000e-100 375.0
36 TraesCS3A01G302000 chr6A 84.677 372 49 7 1127 1494 3276428 3276795 1.100000e-96 364.0
37 TraesCS3A01G302000 chr6A 86.063 287 37 1 1518 1804 102111490 102111773 6.790000e-79 305.0
38 TraesCS3A01G302000 chr6A 96.970 132 4 0 3521 3652 595074358 595074227 7.030000e-54 222.0
39 TraesCS3A01G302000 chr6A 85.782 211 17 7 1886 2087 102111877 102112083 1.520000e-50 211.0
40 TraesCS3A01G302000 chr6A 97.297 37 1 0 2348 2384 457397462 457397426 4.510000e-06 63.9
41 TraesCS3A01G302000 chr6A 97.297 37 1 0 2348 2384 607845460 607845424 4.510000e-06 63.9
42 TraesCS3A01G302000 chr2A 90.347 518 37 5 2544 3061 665835724 665836228 0.000000e+00 667.0
43 TraesCS3A01G302000 chr2A 82.670 779 86 28 21 771 698123915 698123158 0.000000e+00 645.0
44 TraesCS3A01G302000 chr2A 99.095 221 2 0 3117 3337 258346747 258346967 1.090000e-106 398.0
45 TraesCS3A01G302000 chr2A 98.190 221 4 0 3117 3337 177665806 177665586 2.360000e-103 387.0
46 TraesCS3A01G302000 chr2A 85.263 380 48 6 1119 1494 665834606 665834981 8.470000e-103 385.0
47 TraesCS3A01G302000 chr2A 84.615 377 47 7 1119 1494 665833527 665833893 1.100000e-96 364.0
48 TraesCS3A01G302000 chr2A 85.714 287 38 1 1518 1804 665834977 665835260 3.160000e-77 300.0
49 TraesCS3A01G302000 chr2A 84.906 265 35 4 1541 1804 665833960 665834220 4.140000e-66 263.0
50 TraesCS3A01G302000 chr2A 96.269 134 5 0 3514 3647 563141652 563141785 2.530000e-53 220.0
51 TraesCS3A01G302000 chr2A 86.842 152 20 0 3371 3522 665836226 665836377 2.580000e-38 171.0
52 TraesCS3A01G302000 chr2A 89.231 65 4 1 2315 2379 734830621 734830682 1.610000e-10 78.7
53 TraesCS3A01G302000 chr5D 88.225 569 52 5 2495 3061 127880043 127880598 0.000000e+00 665.0
54 TraesCS3A01G302000 chr5D 84.219 640 59 25 1677 2284 26283874 26284503 7.780000e-163 584.0
55 TraesCS3A01G302000 chr5D 82.634 691 74 22 1 682 497163969 497163316 2.180000e-158 569.0
56 TraesCS3A01G302000 chr5D 88.249 417 44 4 1518 1933 127879198 127879610 1.350000e-135 494.0
57 TraesCS3A01G302000 chr5D 79.264 299 37 14 1000 1296 127878885 127879160 9.220000e-43 185.0
58 TraesCS3A01G302000 chr5D 100.000 36 0 0 2348 2383 115124535 115124500 3.490000e-07 67.6
59 TraesCS3A01G302000 chr2D 82.576 792 101 20 1 765 432765492 432764711 0.000000e+00 664.0
60 TraesCS3A01G302000 chr2D 83.776 715 78 21 1 699 556233606 556234298 1.270000e-180 643.0
61 TraesCS3A01G302000 chr2D 98.450 129 2 0 3519 3647 622315786 622315658 1.510000e-55 228.0
62 TraesCS3A01G302000 chr2D 97.692 130 3 0 3518 3647 619720675 619720546 1.950000e-54 224.0
63 TraesCS3A01G302000 chr2D 79.444 180 25 9 1009 1187 604702154 604701986 3.410000e-22 117.0
64 TraesCS3A01G302000 chr2D 100.000 36 0 0 2345 2380 536384890 536384925 3.490000e-07 67.6
65 TraesCS3A01G302000 chr6D 82.022 801 90 21 11 767 422220975 422220185 2.740000e-177 632.0
66 TraesCS3A01G302000 chr6D 88.363 507 44 9 2 499 422067244 422067744 3.600000e-166 595.0
67 TraesCS3A01G302000 chr6D 98.630 219 3 0 3117 3335 217732161 217731943 6.550000e-104 388.0
68 TraesCS3A01G302000 chr6D 86.486 259 29 4 1174 1431 231083423 231083170 4.110000e-71 279.0
69 TraesCS3A01G302000 chr6D 100.000 35 0 0 2347 2381 473233584 473233618 1.250000e-06 65.8
70 TraesCS3A01G302000 chr6D 100.000 33 0 0 2348 2380 29741029 29740997 1.620000e-05 62.1
71 TraesCS3A01G302000 chr6D 100.000 33 0 0 2348 2380 101445632 101445600 1.620000e-05 62.1
72 TraesCS3A01G302000 chr6D 97.222 36 1 0 2345 2380 142577077 142577112 1.620000e-05 62.1
73 TraesCS3A01G302000 chr6D 97.222 36 1 0 2345 2380 339469424 339469459 1.620000e-05 62.1
74 TraesCS3A01G302000 chr6D 97.222 36 1 0 2345 2380 378561686 378561721 1.620000e-05 62.1
75 TraesCS3A01G302000 chr6D 100.000 33 0 0 2348 2380 414526205 414526173 1.620000e-05 62.1
76 TraesCS3A01G302000 chr6D 100.000 33 0 0 2348 2380 462022605 462022573 1.620000e-05 62.1
77 TraesCS3A01G302000 chr5B 81.795 780 109 26 1 768 10269280 10268522 1.650000e-174 623.0
78 TraesCS3A01G302000 chr5B 88.825 519 43 8 2544 3061 693117822 693118326 1.650000e-174 623.0
79 TraesCS3A01G302000 chr5B 81.993 572 59 22 1523 2087 693117138 693117672 3.830000e-121 446.0
80 TraesCS3A01G302000 chr5B 95.000 40 1 1 2348 2387 63941637 63941675 1.620000e-05 62.1
81 TraesCS3A01G302000 chr7B 88.417 518 43 8 2544 3061 382731722 382732222 4.620000e-170 608.0
82 TraesCS3A01G302000 chr7B 87.308 260 21 8 1836 2087 382731317 382731572 2.460000e-73 287.0
83 TraesCS3A01G302000 chr7B 84.942 259 33 4 1174 1431 82145036 82145289 1.930000e-64 257.0
84 TraesCS3A01G302000 chr1B 90.869 449 40 1 2544 2991 319969958 319970406 7.730000e-168 601.0
85 TraesCS3A01G302000 chr1B 87.500 208 17 5 1886 2087 319969602 319969806 1.170000e-56 231.0
86 TraesCS3A01G302000 chr1B 95.000 40 1 1 2348 2387 73021590 73021552 1.620000e-05 62.1
87 TraesCS3A01G302000 chr7A 84.628 618 48 22 1677 2284 528295846 528295266 6.060000e-159 571.0
88 TraesCS3A01G302000 chr7A 97.297 37 1 0 2345 2381 50004274 50004310 4.510000e-06 63.9
89 TraesCS3A01G302000 chr4A 82.919 603 67 15 197 767 709847062 709846464 1.340000e-140 510.0
90 TraesCS3A01G302000 chr4A 97.333 225 6 0 3117 3341 511014135 511013911 3.050000e-102 383.0
91 TraesCS3A01G302000 chr6B 96.154 234 9 0 3105 3338 225881590 225881357 3.050000e-102 383.0
92 TraesCS3A01G302000 chr6B 96.970 132 4 0 3518 3649 76478026 76478157 7.030000e-54 222.0
93 TraesCS3A01G302000 chr6B 95.070 142 4 2 3517 3658 660666018 660665880 2.530000e-53 220.0
94 TraesCS3A01G302000 chr6B 91.667 84 4 2 1000 1082 660669143 660669062 4.410000e-21 113.0
95 TraesCS3A01G302000 chr6B 95.122 41 0 2 2343 2381 720514258 720514298 4.510000e-06 63.9
96 TraesCS3A01G302000 chr2B 97.333 225 6 0 3115 3339 763962023 763962247 3.050000e-102 383.0
97 TraesCS3A01G302000 chr2B 97.321 224 6 0 3117 3340 16225279 16225502 1.100000e-101 381.0
98 TraesCS3A01G302000 chr2B 97.744 133 2 1 3517 3648 601185607 601185475 1.510000e-55 228.0
99 TraesCS3A01G302000 chr2B 80.800 125 22 2 1000 1124 1891260 1891138 4.450000e-16 97.1
100 TraesCS3A01G302000 chr1A 84.642 293 28 12 3808 4087 50705070 50705358 5.320000e-70 276.0
101 TraesCS3A01G302000 chr4B 96.970 132 4 0 3517 3648 99437046 99436915 7.030000e-54 222.0
102 TraesCS3A01G302000 chr4B 89.535 172 17 1 4058 4228 355507079 355507250 3.270000e-52 217.0
103 TraesCS3A01G302000 chr4D 87.302 63 4 3 2322 2380 505436117 505436179 9.690000e-08 69.4
104 TraesCS3A01G302000 chr4D 100.000 34 0 0 2348 2381 109931859 109931892 4.510000e-06 63.9
105 TraesCS3A01G302000 chr4D 100.000 34 0 0 2348 2381 253767489 253767456 4.510000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G302000 chr3A 535223465 535228857 5392 True 9960.000000 9960 100.000000 1 5393 1 chr3A.!!$R1 5392
1 TraesCS3A01G302000 chr3A 588444092 588444866 774 False 654.000000 654 82.658000 11 765 1 chr3A.!!$F1 754
2 TraesCS3A01G302000 chr3B 540727618 540731679 4061 False 1498.250000 2562 93.999750 774 5393 4 chr3B.!!$F3 4619
3 TraesCS3A01G302000 chr3B 741575673 741576404 731 False 486.000000 486 79.301000 11 765 1 chr3B.!!$F2 754
4 TraesCS3A01G302000 chr3B 367487455 367489856 2401 True 423.775000 638 85.070500 955 3061 4 chr3B.!!$R2 2106
5 TraesCS3A01G302000 chr3B 770091125 770094823 3698 False 284.000000 287 85.103000 3808 4087 2 chr3B.!!$F4 279
6 TraesCS3A01G302000 chr3D 414904519 414908839 4320 False 1076.666667 2244 92.872333 774 5393 6 chr3D.!!$F3 4619
7 TraesCS3A01G302000 chr3D 199540138 199540900 762 True 599.000000 599 81.669000 11 766 1 chr3D.!!$R1 755
8 TraesCS3A01G302000 chr1D 249745830 249746635 805 False 721.000000 721 83.764000 1 767 1 chr1D.!!$F1 766
9 TraesCS3A01G302000 chr1D 454554911 454555712 801 True 641.000000 641 82.152000 1 769 1 chr1D.!!$R1 768
10 TraesCS3A01G302000 chr7D 86754231 86754994 763 False 673.000000 673 82.971000 11 772 1 chr7D.!!$F1 761
11 TraesCS3A01G302000 chr7D 613866826 613867346 520 True 531.000000 531 85.448000 1 522 1 chr7D.!!$R3 521
12 TraesCS3A01G302000 chr6A 569970937 569971728 791 True 643.000000 643 82.178000 1 768 1 chr6A.!!$R2 767
13 TraesCS3A01G302000 chr6A 3276428 3277380 952 False 402.000000 440 82.854500 1127 2087 2 chr6A.!!$F1 960
14 TraesCS3A01G302000 chr6A 102111128 102112740 1612 False 389.500000 667 86.834500 1119 3061 4 chr6A.!!$F2 1942
15 TraesCS3A01G302000 chr2A 698123158 698123915 757 True 645.000000 645 82.670000 21 771 1 chr2A.!!$R2 750
16 TraesCS3A01G302000 chr2A 665833527 665836377 2850 False 358.333333 667 86.281167 1119 3522 6 chr2A.!!$F4 2403
17 TraesCS3A01G302000 chr5D 26283874 26284503 629 False 584.000000 584 84.219000 1677 2284 1 chr5D.!!$F1 607
18 TraesCS3A01G302000 chr5D 497163316 497163969 653 True 569.000000 569 82.634000 1 682 1 chr5D.!!$R2 681
19 TraesCS3A01G302000 chr5D 127878885 127880598 1713 False 448.000000 665 85.246000 1000 3061 3 chr5D.!!$F2 2061
20 TraesCS3A01G302000 chr2D 432764711 432765492 781 True 664.000000 664 82.576000 1 765 1 chr2D.!!$R1 764
21 TraesCS3A01G302000 chr2D 556233606 556234298 692 False 643.000000 643 83.776000 1 699 1 chr2D.!!$F2 698
22 TraesCS3A01G302000 chr6D 422220185 422220975 790 True 632.000000 632 82.022000 11 767 1 chr6D.!!$R6 756
23 TraesCS3A01G302000 chr6D 422067244 422067744 500 False 595.000000 595 88.363000 2 499 1 chr6D.!!$F4 497
24 TraesCS3A01G302000 chr5B 10268522 10269280 758 True 623.000000 623 81.795000 1 768 1 chr5B.!!$R1 767
25 TraesCS3A01G302000 chr5B 693117138 693118326 1188 False 534.500000 623 85.409000 1523 3061 2 chr5B.!!$F2 1538
26 TraesCS3A01G302000 chr7B 382731317 382732222 905 False 447.500000 608 87.862500 1836 3061 2 chr7B.!!$F2 1225
27 TraesCS3A01G302000 chr1B 319969602 319970406 804 False 416.000000 601 89.184500 1886 2991 2 chr1B.!!$F1 1105
28 TraesCS3A01G302000 chr7A 528295266 528295846 580 True 571.000000 571 84.628000 1677 2284 1 chr7A.!!$R1 607
29 TraesCS3A01G302000 chr4A 709846464 709847062 598 True 510.000000 510 82.919000 197 767 1 chr4A.!!$R2 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 439 1.227527 CACAACCGTGCCTCTCACA 60.228 57.895 0.00 0.00 45.92 3.58 F
1623 2859 1.075542 TAAGTGATTTCGGTGCAGCG 58.924 50.000 31.22 31.22 0.00 5.18 F
3304 5265 0.314898 CGTCGACCTAGAACTACGCG 60.315 60.000 10.58 3.53 0.00 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 3478 1.001406 AGAAGGACAGTTCCAGAAGCG 59.999 52.381 0.00 0.00 45.72 4.68 R
3523 5484 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
4989 10376 0.462375 ACACGCGCCATTATCAGGTA 59.538 50.000 5.73 0.00 0.00 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
268 317 4.681978 ACGGCCGTGACTCTTGCC 62.682 66.667 33.75 0.00 40.54 4.52
288 337 1.670811 CAAAGCACAACCGTGACTCTT 59.329 47.619 0.00 0.00 46.80 2.85
378 439 1.227527 CACAACCGTGCCTCTCACA 60.228 57.895 0.00 0.00 45.92 3.58
411 476 2.096860 GTGACTCTCGCGAAAGGAAAAC 60.097 50.000 14.96 2.57 0.00 2.43
480 553 3.236816 CTCTCGCGAAAGTAAAACCGTA 58.763 45.455 11.33 0.00 0.00 4.02
509 582 4.495184 CGTGAAAGCAAAACCGTAACTCTT 60.495 41.667 0.00 0.00 0.00 2.85
579 675 8.928844 TTTTAATCGAAAAGCTAAGAAAGACG 57.071 30.769 0.00 0.00 31.90 4.18
606 703 7.984391 GTGGAAAACCAAAATGTCAAGAAAAT 58.016 30.769 0.00 0.00 0.00 1.82
771 890 2.674357 GTTAATTAGTTGCTCCCGCGAA 59.326 45.455 8.23 0.00 39.65 4.70
772 891 1.816074 AATTAGTTGCTCCCGCGAAA 58.184 45.000 8.23 0.00 39.65 3.46
959 1089 1.587043 GAAAGGCCAACCGGAGCTTC 61.587 60.000 9.46 5.35 42.76 3.86
998 1136 1.301401 GCACCAGGTCGCTGTAACA 60.301 57.895 6.74 0.00 0.00 2.41
1067 1205 4.778143 GAGGCCGCCACCAACGAT 62.778 66.667 13.15 0.00 0.00 3.73
1125 1263 1.125093 TGTCTCCCTTTTCCTCGGCA 61.125 55.000 0.00 0.00 0.00 5.69
1414 2645 2.995939 TCTCTCATGCAACATTGTCGTC 59.004 45.455 0.00 0.00 0.00 4.20
1431 2662 2.511600 CGGAGGCCACGGTGATTC 60.512 66.667 10.28 4.01 0.00 2.52
1432 2663 2.668632 GGAGGCCACGGTGATTCA 59.331 61.111 10.28 0.00 0.00 2.57
1619 2855 3.006940 TCATGGTAAGTGATTTCGGTGC 58.993 45.455 0.00 0.00 0.00 5.01
1623 2859 1.075542 TAAGTGATTTCGGTGCAGCG 58.924 50.000 31.22 31.22 0.00 5.18
1651 2887 7.729116 ACATATTTTGAGGGCCAAGAATTATG 58.271 34.615 6.18 14.03 35.94 1.90
1720 2957 8.649973 AGATAACCTCATTTATCTGACGTTTC 57.350 34.615 4.88 0.00 43.98 2.78
2047 3347 5.997129 TGACTGCTGACATTTGATAAAGACA 59.003 36.000 0.00 0.00 0.00 3.41
2133 3478 5.835113 TGCTTTGGCTGAACCTTTATATC 57.165 39.130 0.00 0.00 40.22 1.63
2147 3495 5.104900 ACCTTTATATCGCTTCTGGAACTGT 60.105 40.000 0.00 0.00 0.00 3.55
2159 3507 6.207614 GCTTCTGGAACTGTCCTTCTTAATTT 59.792 38.462 0.00 0.00 45.22 1.82
2160 3508 7.390718 GCTTCTGGAACTGTCCTTCTTAATTTA 59.609 37.037 0.00 0.00 45.22 1.40
2161 3509 9.284968 CTTCTGGAACTGTCCTTCTTAATTTAA 57.715 33.333 0.00 0.00 45.22 1.52
2163 3511 9.807921 TCTGGAACTGTCCTTCTTAATTTAATT 57.192 29.630 0.00 0.00 45.22 1.40
2164 3512 9.846248 CTGGAACTGTCCTTCTTAATTTAATTG 57.154 33.333 0.00 0.00 45.22 2.32
2165 3513 9.362151 TGGAACTGTCCTTCTTAATTTAATTGT 57.638 29.630 0.00 0.00 45.22 2.71
2169 3517 9.476202 ACTGTCCTTCTTAATTTAATTGTTTGC 57.524 29.630 0.00 0.00 0.00 3.68
2339 4237 2.903375 ATATCTACTCCCTCCGTCCC 57.097 55.000 0.00 0.00 0.00 4.46
2340 4238 1.526315 TATCTACTCCCTCCGTCCCA 58.474 55.000 0.00 0.00 0.00 4.37
2349 4247 1.003812 CCCTCCGTCCCACAATGTAAA 59.996 52.381 0.00 0.00 0.00 2.01
2479 4409 4.274147 TGCCTAAGATTCCCGCAATTTTA 58.726 39.130 0.00 0.00 0.00 1.52
2480 4410 4.892934 TGCCTAAGATTCCCGCAATTTTAT 59.107 37.500 0.00 0.00 0.00 1.40
2481 4411 5.362430 TGCCTAAGATTCCCGCAATTTTATT 59.638 36.000 0.00 0.00 0.00 1.40
2482 4412 6.127196 TGCCTAAGATTCCCGCAATTTTATTT 60.127 34.615 0.00 0.00 0.00 1.40
2483 4413 7.068839 TGCCTAAGATTCCCGCAATTTTATTTA 59.931 33.333 0.00 0.00 0.00 1.40
2484 4414 8.088365 GCCTAAGATTCCCGCAATTTTATTTAT 58.912 33.333 0.00 0.00 0.00 1.40
2485 4415 9.981114 CCTAAGATTCCCGCAATTTTATTTATT 57.019 29.630 0.00 0.00 0.00 1.40
2570 4510 2.731976 CACCTATCGCTTAATCCGCTTC 59.268 50.000 0.00 0.00 0.00 3.86
2822 4779 9.744468 GTCAAGAAACTATTTTAATGTGGTTGT 57.256 29.630 0.00 0.00 0.00 3.32
2972 4930 4.517075 GTGGGCAAGGCTAATTCTAATCTC 59.483 45.833 0.00 0.00 0.00 2.75
3013 4971 1.892474 TGGCCTTTTTGACAGGTATGC 59.108 47.619 3.32 0.00 33.40 3.14
3084 5045 6.332635 ACTCCCTCCATCCATATTAATTGACA 59.667 38.462 0.00 0.00 0.00 3.58
3118 5079 8.707938 ATACACCTTTGTATTAAAGTCGGTAC 57.292 34.615 0.00 0.00 45.14 3.34
3119 5080 6.762333 ACACCTTTGTATTAAAGTCGGTACT 58.238 36.000 0.00 0.00 33.18 2.73
3120 5081 7.895759 ACACCTTTGTATTAAAGTCGGTACTA 58.104 34.615 0.00 0.00 31.27 1.82
3121 5082 7.814587 ACACCTTTGTATTAAAGTCGGTACTAC 59.185 37.037 0.00 0.00 31.27 2.73
3122 5083 7.276438 CACCTTTGTATTAAAGTCGGTACTACC 59.724 40.741 0.00 0.00 33.75 3.18
3123 5084 7.179160 ACCTTTGTATTAAAGTCGGTACTACCT 59.821 37.037 3.68 0.00 35.66 3.08
3124 5085 7.704047 CCTTTGTATTAAAGTCGGTACTACCTC 59.296 40.741 3.68 0.00 35.66 3.85
3125 5086 6.699575 TGTATTAAAGTCGGTACTACCTCC 57.300 41.667 3.68 0.00 35.66 4.30
3126 5087 4.907879 ATTAAAGTCGGTACTACCTCCG 57.092 45.455 3.68 0.00 46.93 4.63
3127 5088 2.206576 AAAGTCGGTACTACCTCCGT 57.793 50.000 3.68 0.00 45.88 4.69
3128 5089 1.743996 AAGTCGGTACTACCTCCGTC 58.256 55.000 3.68 0.00 45.88 4.79
3129 5090 0.908198 AGTCGGTACTACCTCCGTCT 59.092 55.000 3.68 0.99 45.88 4.18
3130 5091 2.111384 AGTCGGTACTACCTCCGTCTA 58.889 52.381 3.68 0.00 45.88 2.59
3131 5092 2.102252 AGTCGGTACTACCTCCGTCTAG 59.898 54.545 3.68 0.00 45.88 2.43
3132 5093 1.414181 TCGGTACTACCTCCGTCTAGG 59.586 57.143 3.68 0.00 45.88 3.02
3142 5103 4.571372 CCTCCGTCTAGGTGAATAAGTC 57.429 50.000 0.00 0.00 41.99 3.01
3143 5104 3.952323 CCTCCGTCTAGGTGAATAAGTCA 59.048 47.826 0.00 0.00 41.99 3.41
3144 5105 4.585162 CCTCCGTCTAGGTGAATAAGTCAT 59.415 45.833 0.00 0.00 38.90 3.06
3145 5106 5.069251 CCTCCGTCTAGGTGAATAAGTCATT 59.931 44.000 0.00 0.00 38.90 2.57
3146 5107 6.145338 TCCGTCTAGGTGAATAAGTCATTC 57.855 41.667 0.00 0.00 40.27 2.67
3147 5108 4.976731 CCGTCTAGGTGAATAAGTCATTCG 59.023 45.833 0.00 0.00 45.25 3.34
3154 5115 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24
3155 5116 5.715264 GTGAATAAGTCATTCGCGTAGTTC 58.285 41.667 5.77 0.29 45.25 3.01
3156 5117 5.515626 GTGAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 45.25 3.01
3157 5118 6.690098 GTGAATAAGTCATTCGCGTAGTTCTA 59.310 38.462 5.77 0.00 45.25 2.10
3158 5119 6.910972 TGAATAAGTCATTCGCGTAGTTCTAG 59.089 38.462 5.77 0.00 45.25 2.43
3159 5120 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
3160 5121 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
3161 5122 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
3162 5123 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
3163 5124 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
3164 5125 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
3165 5126 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
3166 5127 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
3167 5128 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
3168 5129 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
3169 5130 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
3170 5131 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
3171 5132 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
3172 5133 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
3173 5134 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
3174 5135 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
3175 5136 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
3176 5137 6.098982 AGTTCTAGGTCATCGATTTGAGGAAT 59.901 38.462 0.00 0.00 39.46 3.01
3177 5138 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
3178 5139 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
3179 5140 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
3180 5141 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
3181 5142 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
3183 5144 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
3184 5145 9.831737 GGTCATCGATTTGAGGAATTAAATATG 57.168 33.333 0.00 0.00 39.46 1.78
3227 5188 9.570468 AAGTATATCACTAGATTTCTACACGGA 57.430 33.333 0.00 0.00 36.04 4.69
3228 5189 9.742144 AGTATATCACTAGATTTCTACACGGAT 57.258 33.333 0.00 0.00 34.98 4.18
3229 5190 9.776158 GTATATCACTAGATTTCTACACGGATG 57.224 37.037 0.00 0.00 35.67 3.51
3230 5191 6.716934 ATCACTAGATTTCTACACGGATGT 57.283 37.500 0.00 0.00 43.30 3.06
3231 5192 7.818997 ATCACTAGATTTCTACACGGATGTA 57.181 36.000 0.00 0.00 40.48 2.29
3232 5193 9.000486 TATCACTAGATTTCTACACGGATGTAG 58.000 37.037 7.95 7.95 45.22 2.74
3296 5257 8.893219 TTAGATAGTTAAATCGTCGACCTAGA 57.107 34.615 10.58 1.59 0.00 2.43
3297 5258 7.798596 AGATAGTTAAATCGTCGACCTAGAA 57.201 36.000 10.58 0.00 0.00 2.10
3298 5259 7.638134 AGATAGTTAAATCGTCGACCTAGAAC 58.362 38.462 10.58 8.24 0.00 3.01
3299 5260 5.893897 AGTTAAATCGTCGACCTAGAACT 57.106 39.130 10.58 10.32 0.00 3.01
3300 5261 6.992063 AGTTAAATCGTCGACCTAGAACTA 57.008 37.500 10.58 0.00 0.00 2.24
3301 5262 6.780127 AGTTAAATCGTCGACCTAGAACTAC 58.220 40.000 10.58 0.00 0.00 2.73
3302 5263 3.940657 AATCGTCGACCTAGAACTACG 57.059 47.619 10.58 0.00 0.00 3.51
3303 5264 1.002366 TCGTCGACCTAGAACTACGC 58.998 55.000 10.58 0.00 0.00 4.42
3304 5265 0.314898 CGTCGACCTAGAACTACGCG 60.315 60.000 10.58 3.53 0.00 6.01
3305 5266 1.002366 GTCGACCTAGAACTACGCGA 58.998 55.000 15.93 0.00 0.00 5.87
3306 5267 1.394917 GTCGACCTAGAACTACGCGAA 59.605 52.381 15.93 0.00 0.00 4.70
3307 5268 2.031437 GTCGACCTAGAACTACGCGAAT 59.969 50.000 15.93 0.00 0.00 3.34
3308 5269 2.031314 TCGACCTAGAACTACGCGAATG 59.969 50.000 15.93 4.47 0.00 2.67
3309 5270 2.031314 CGACCTAGAACTACGCGAATGA 59.969 50.000 15.93 0.00 0.00 2.57
3310 5271 3.361414 GACCTAGAACTACGCGAATGAC 58.639 50.000 15.93 0.66 0.00 3.06
3311 5272 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
3312 5273 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
3313 5274 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
3314 5275 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
3315 5276 6.183360 ACCTAGAACTACGCGAATGACTTATT 60.183 38.462 15.93 0.00 0.00 1.40
3316 5277 6.360148 CCTAGAACTACGCGAATGACTTATTC 59.640 42.308 15.93 3.24 41.46 1.75
3317 5278 5.647589 AGAACTACGCGAATGACTTATTCA 58.352 37.500 15.93 0.00 44.42 2.57
3318 5279 5.515626 AGAACTACGCGAATGACTTATTCAC 59.484 40.000 15.93 0.00 44.42 3.18
3319 5280 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
3320 5281 1.924524 ACGCGAATGACTTATTCACCG 59.075 47.619 15.93 0.00 44.42 4.94
3321 5282 2.190161 CGCGAATGACTTATTCACCGA 58.810 47.619 0.00 0.00 44.42 4.69
3322 5283 2.216488 CGCGAATGACTTATTCACCGAG 59.784 50.000 0.00 0.00 44.42 4.63
3323 5284 3.444916 GCGAATGACTTATTCACCGAGA 58.555 45.455 0.00 0.00 44.42 4.04
3324 5285 3.243177 GCGAATGACTTATTCACCGAGAC 59.757 47.826 0.00 0.00 44.42 3.36
3325 5286 3.482472 CGAATGACTTATTCACCGAGACG 59.518 47.826 0.00 0.00 44.42 4.18
3326 5287 3.797256 GAATGACTTATTCACCGAGACGG 59.203 47.826 8.67 8.67 43.79 4.79
3327 5288 4.439700 GAATGACTTATTCACCGAGACGGA 60.440 45.833 16.99 0.00 45.73 4.69
3328 5289 6.238416 GAATGACTTATTCACCGAGACGGAG 61.238 48.000 16.99 9.14 45.73 4.63
3350 5311 5.408356 AGGTAGTACTAAATGTGCGTCAAG 58.592 41.667 3.61 0.00 36.37 3.02
3361 5322 6.942532 AATGTGCGTCAAGTAATATGGATT 57.057 33.333 0.00 0.00 0.00 3.01
3365 5326 5.295787 GTGCGTCAAGTAATATGGATTGGAA 59.704 40.000 0.00 0.00 0.00 3.53
3402 5363 5.666969 TTTAGCAGTGTATGTGTTGTCAC 57.333 39.130 0.00 0.00 44.08 3.67
3408 5369 5.220854 GCAGTGTATGTGTTGTCACTTTCTT 60.221 40.000 0.00 0.00 44.14 2.52
3424 5385 7.013750 GTCACTTTCTTGAAGGAAGGAATTTCT 59.986 37.037 17.07 0.00 39.79 2.52
3487 5448 6.204882 ACAGAAGGCATGTAACTGTCTAAAAC 59.795 38.462 9.74 0.00 37.24 2.43
3488 5449 5.705905 AGAAGGCATGTAACTGTCTAAAACC 59.294 40.000 0.00 0.00 29.02 3.27
3522 5483 4.308899 ACTTGAGATCGTAGCCATGTAC 57.691 45.455 0.00 0.00 0.00 2.90
3523 5484 3.954904 ACTTGAGATCGTAGCCATGTACT 59.045 43.478 0.00 0.00 0.00 2.73
3524 5485 4.036971 ACTTGAGATCGTAGCCATGTACTC 59.963 45.833 0.00 0.00 0.00 2.59
3525 5486 2.885266 TGAGATCGTAGCCATGTACTCC 59.115 50.000 0.00 0.00 0.00 3.85
3526 5487 2.229302 GAGATCGTAGCCATGTACTCCC 59.771 54.545 0.00 0.00 0.00 4.30
3527 5488 2.158445 AGATCGTAGCCATGTACTCCCT 60.158 50.000 0.00 0.00 0.00 4.20
3528 5489 1.688772 TCGTAGCCATGTACTCCCTC 58.311 55.000 0.00 0.00 0.00 4.30
3529 5490 0.674534 CGTAGCCATGTACTCCCTCC 59.325 60.000 0.00 0.00 0.00 4.30
3530 5491 0.674534 GTAGCCATGTACTCCCTCCG 59.325 60.000 0.00 0.00 0.00 4.63
3531 5492 0.260816 TAGCCATGTACTCCCTCCGT 59.739 55.000 0.00 0.00 0.00 4.69
3532 5493 1.043673 AGCCATGTACTCCCTCCGTC 61.044 60.000 0.00 0.00 0.00 4.79
3533 5494 2.029307 GCCATGTACTCCCTCCGTCC 62.029 65.000 0.00 0.00 0.00 4.79
3534 5495 1.734137 CATGTACTCCCTCCGTCCG 59.266 63.158 0.00 0.00 0.00 4.79
3535 5496 1.455217 ATGTACTCCCTCCGTCCGG 60.455 63.158 0.00 0.00 0.00 5.14
3536 5497 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
3537 5498 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3538 5499 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3539 5500 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3540 5501 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3541 5502 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3542 5503 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3543 5504 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3544 5505 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3545 5506 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3546 5507 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3547 5508 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3548 5509 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3549 5510 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3550 5511 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3551 5512 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3552 5513 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3553 5514 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3554 5515 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3555 5516 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3556 5517 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
3557 5518 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
3558 5519 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
3559 5520 7.433131 CGGAAATACTTGTCATCAAAATGGATG 59.567 37.037 0.00 0.00 44.78 3.51
3568 5529 5.881923 CATCAAAATGGATGAAAGGGGAT 57.118 39.130 0.00 0.00 46.00 3.85
3569 5530 5.607477 CATCAAAATGGATGAAAGGGGATG 58.393 41.667 0.00 0.00 46.00 3.51
3570 5531 4.686891 TCAAAATGGATGAAAGGGGATGT 58.313 39.130 0.00 0.00 0.00 3.06
3571 5532 5.836705 TCAAAATGGATGAAAGGGGATGTA 58.163 37.500 0.00 0.00 0.00 2.29
3572 5533 6.442961 TCAAAATGGATGAAAGGGGATGTAT 58.557 36.000 0.00 0.00 0.00 2.29
3573 5534 6.550854 TCAAAATGGATGAAAGGGGATGTATC 59.449 38.462 0.00 0.00 0.00 2.24
3574 5535 5.937492 AATGGATGAAAGGGGATGTATCT 57.063 39.130 0.00 0.00 0.00 1.98
3575 5536 7.406620 AAATGGATGAAAGGGGATGTATCTA 57.593 36.000 0.00 0.00 0.00 1.98
3576 5537 6.633325 ATGGATGAAAGGGGATGTATCTAG 57.367 41.667 0.00 0.00 0.00 2.43
3577 5538 5.726560 TGGATGAAAGGGGATGTATCTAGA 58.273 41.667 0.00 0.00 0.00 2.43
3578 5539 6.334296 TGGATGAAAGGGGATGTATCTAGAT 58.666 40.000 10.73 10.73 0.00 1.98
3579 5540 6.214208 TGGATGAAAGGGGATGTATCTAGATG 59.786 42.308 15.79 0.00 0.00 2.90
3580 5541 6.214412 GGATGAAAGGGGATGTATCTAGATGT 59.786 42.308 15.79 1.25 0.00 3.06
3581 5542 7.400339 GGATGAAAGGGGATGTATCTAGATGTA 59.600 40.741 15.79 4.44 0.00 2.29
3582 5543 8.923838 ATGAAAGGGGATGTATCTAGATGTAT 57.076 34.615 15.79 9.11 0.00 2.29
3583 5544 8.742125 TGAAAGGGGATGTATCTAGATGTATT 57.258 34.615 15.79 0.00 0.00 1.89
3584 5545 9.170890 TGAAAGGGGATGTATCTAGATGTATTT 57.829 33.333 15.79 5.17 0.00 1.40
3588 5549 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
3626 5587 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
3633 5594 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
3634 5595 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
3635 5596 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
3636 5597 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3637 5598 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3638 5599 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3639 5600 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3640 5601 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3641 5602 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3642 5603 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3643 5604 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3644 5605 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3645 5606 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3646 5607 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3771 5732 3.813166 CCTCGTGCTTTCAAGAAAGGTTA 59.187 43.478 20.53 0.00 45.85 2.85
3821 5782 9.573166 AAATATACAATGCCACAGCTCTTTATA 57.427 29.630 0.00 0.00 40.80 0.98
3879 9254 4.692625 CGAGATTCAAAGAACCACAGATGT 59.307 41.667 0.00 0.00 0.00 3.06
3926 9301 2.448453 AGCTAAGAGCCTAAGACACGT 58.552 47.619 0.00 0.00 43.77 4.49
4174 9555 6.488683 TCAAACTGAAATTCGTGGAGGTATTT 59.511 34.615 0.00 0.00 0.00 1.40
4213 9594 4.337555 AGTGCAATAGCTGATTTCATCCAC 59.662 41.667 0.00 0.00 42.74 4.02
4222 9603 4.889409 GCTGATTTCATCCACCCTATTTCA 59.111 41.667 0.00 0.00 0.00 2.69
4240 9621 9.612620 CCTATTTCACATTTTCACTTACAGTTC 57.387 33.333 0.00 0.00 0.00 3.01
4481 9862 0.824109 TCTGTCGCCATTCCCTACTG 59.176 55.000 0.00 0.00 0.00 2.74
4482 9863 0.824109 CTGTCGCCATTCCCTACTGA 59.176 55.000 0.00 0.00 0.00 3.41
4591 9975 6.816616 TTTTGGGTTTTATCCTTTTGTCCT 57.183 33.333 0.00 0.00 0.00 3.85
4653 10037 5.104776 TCCTTCACTCTCCAATGACCTAATG 60.105 44.000 0.00 0.00 0.00 1.90
4672 10057 2.036098 CCAGCAACATCCAGGGCA 59.964 61.111 0.00 0.00 0.00 5.36
4794 10180 4.440826 TGTGTTAGGTTCTGCCCTTTTA 57.559 40.909 0.00 0.00 38.26 1.52
4802 10188 3.004419 GGTTCTGCCCTTTTAGTGACAAC 59.996 47.826 0.00 0.00 0.00 3.32
4866 10253 6.985188 TTGCACTAGTATTCCTCACATTTC 57.015 37.500 0.00 0.00 0.00 2.17
4880 10267 9.605275 TTCCTCACATTTCAGTATCAGAAATAG 57.395 33.333 0.00 0.00 42.17 1.73
4971 10358 0.963225 GTTTGCCAACGGGGTAACAT 59.037 50.000 0.00 0.00 41.33 2.71
4989 10376 6.831868 GGTAACATTGTTACCATGGGTATTCT 59.168 38.462 37.00 0.00 42.97 2.40
5005 10392 2.148916 TTCTACCTGATAATGGCGCG 57.851 50.000 0.00 0.00 0.00 6.86
5008 10395 0.462375 TACCTGATAATGGCGCGTGT 59.538 50.000 8.43 0.00 0.00 4.49
5032 10419 1.361204 TCAGTGCCTCAAATCCCTGA 58.639 50.000 0.00 0.00 0.00 3.86
5034 10421 3.114606 TCAGTGCCTCAAATCCCTGATA 58.885 45.455 0.00 0.00 0.00 2.15
5035 10422 3.523157 TCAGTGCCTCAAATCCCTGATAA 59.477 43.478 0.00 0.00 0.00 1.75
5036 10423 4.166725 TCAGTGCCTCAAATCCCTGATAAT 59.833 41.667 0.00 0.00 0.00 1.28
5039 10450 2.560105 GCCTCAAATCCCTGATAATGGC 59.440 50.000 0.00 0.00 0.00 4.40
5044 10455 4.079844 TCAAATCCCTGATAATGGCAGTCA 60.080 41.667 0.00 0.00 0.00 3.41
5092 10503 8.493787 AATATACCTAGGGTTCCTTTAGACAG 57.506 38.462 14.81 0.00 37.09 3.51
5133 10544 3.037549 AGAATTTCAAAGGTGCACCCAA 58.962 40.909 32.29 16.72 36.42 4.12
5138 10549 1.202806 TCAAAGGTGCACCCAAGAGAG 60.203 52.381 32.29 14.93 36.42 3.20
5158 10569 1.299850 GGGCACTCGGTTGCAAAAC 60.300 57.895 0.00 0.00 44.94 2.43
5234 10645 5.488919 ACCAATTCCTTTCTGGACTCATCTA 59.511 40.000 0.00 0.00 46.14 1.98
5280 10691 5.841810 TCTGTGCTTGTAAAATTTCTTGGG 58.158 37.500 0.00 0.00 0.00 4.12
5307 10718 1.788308 CAAACTTTTGCTCCATGTGCG 59.212 47.619 0.00 0.00 0.00 5.34
5329 10740 6.911484 CGAAAGCAATAGACGTTCAATTTT 57.089 33.333 0.00 0.00 0.00 1.82
5380 10791 0.119155 TCCTTCCTCCTGGGACACAT 59.881 55.000 0.00 0.00 45.03 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 18 0.881796 GTGCCTCTTTCGGAAAAGGG 59.118 55.000 22.03 18.20 41.84 3.95
185 204 0.437295 CGCGAGAGTAACGGTTTTGG 59.563 55.000 0.00 0.00 0.00 3.28
268 317 1.299541 AGAGTCACGGTTGTGCTTTG 58.700 50.000 0.00 0.00 46.01 2.77
378 439 3.856267 GCGAGAGTCACGGTTTTACTTCT 60.856 47.826 11.95 0.00 0.00 2.85
453 526 1.150827 TACTTTCGCGAGAGTCACGA 58.849 50.000 32.47 15.00 43.69 4.35
480 553 1.947456 GGTTTTGCTTTCACGAGAGGT 59.053 47.619 0.00 0.00 0.00 3.85
558 654 4.392138 CCCGTCTTTCTTAGCTTTTCGATT 59.608 41.667 0.00 0.00 0.00 3.34
659 778 0.320771 GCTCTGGACGCTTCCTTCAA 60.321 55.000 11.01 0.00 43.31 2.69
746 865 2.864343 CGGGAGCAACTAATTAACGAGG 59.136 50.000 0.00 0.00 0.00 4.63
771 890 6.936900 CCGTCCCATATTCACTTTCTATGATT 59.063 38.462 0.00 0.00 0.00 2.57
772 891 6.467677 CCGTCCCATATTCACTTTCTATGAT 58.532 40.000 0.00 0.00 0.00 2.45
802 921 1.943340 GCCTGGCATGCTCTAGTTTAC 59.057 52.381 18.92 0.00 0.00 2.01
993 1123 1.819632 CAGCCGCCCCATCTGTTAC 60.820 63.158 0.00 0.00 0.00 2.50
994 1124 2.589540 CAGCCGCCCCATCTGTTA 59.410 61.111 0.00 0.00 0.00 2.41
1113 1251 2.680913 CGCCACTGCCGAGGAAAAG 61.681 63.158 0.00 0.00 0.00 2.27
1389 2620 4.093850 CGACAATGTTGCATGAGAGATTGA 59.906 41.667 18.88 0.00 0.00 2.57
1402 2633 1.635663 GGCCTCCGACGACAATGTTG 61.636 60.000 0.00 0.00 0.00 3.33
1414 2645 2.511600 GAATCACCGTGGCCTCCG 60.512 66.667 3.32 6.33 0.00 4.63
1431 2662 3.571401 AGGTTTTTCATTCCTCTGCACTG 59.429 43.478 0.00 0.00 0.00 3.66
1432 2663 3.837355 AGGTTTTTCATTCCTCTGCACT 58.163 40.909 0.00 0.00 0.00 4.40
1619 2855 2.801063 CCCTCAAAATATGTTGCGCTG 58.199 47.619 9.73 0.00 0.00 5.18
1623 2859 3.195396 TCTTGGCCCTCAAAATATGTTGC 59.805 43.478 0.00 0.00 34.56 4.17
1651 2887 2.530832 ACAAACGGTCAAACACGAAC 57.469 45.000 0.00 0.00 0.00 3.95
1720 2957 3.515502 TCCTTCACTCCAATGGACTACAG 59.484 47.826 0.00 0.00 0.00 2.74
2047 3347 6.556974 TCAGAGTGATTCTCATCCTCAATT 57.443 37.500 0.00 0.00 44.98 2.32
2133 3478 1.001406 AGAAGGACAGTTCCAGAAGCG 59.999 52.381 0.00 0.00 45.72 4.68
2349 4247 2.803956 CGTCCCACAATGTAAGACGTTT 59.196 45.455 21.67 0.00 43.89 3.60
2479 4409 9.845740 GGTCCCAGGCAAAAATAAATAATAAAT 57.154 29.630 0.00 0.00 0.00 1.40
2480 4410 7.982354 CGGTCCCAGGCAAAAATAAATAATAAA 59.018 33.333 0.00 0.00 0.00 1.40
2481 4411 7.342284 TCGGTCCCAGGCAAAAATAAATAATAA 59.658 33.333 0.00 0.00 0.00 1.40
2482 4412 6.834451 TCGGTCCCAGGCAAAAATAAATAATA 59.166 34.615 0.00 0.00 0.00 0.98
2483 4413 5.659079 TCGGTCCCAGGCAAAAATAAATAAT 59.341 36.000 0.00 0.00 0.00 1.28
2484 4414 5.017490 TCGGTCCCAGGCAAAAATAAATAA 58.983 37.500 0.00 0.00 0.00 1.40
2485 4415 4.399934 GTCGGTCCCAGGCAAAAATAAATA 59.600 41.667 0.00 0.00 0.00 1.40
2486 4416 3.194755 GTCGGTCCCAGGCAAAAATAAAT 59.805 43.478 0.00 0.00 0.00 1.40
2487 4417 2.559231 GTCGGTCCCAGGCAAAAATAAA 59.441 45.455 0.00 0.00 0.00 1.40
2488 4418 2.164338 GTCGGTCCCAGGCAAAAATAA 58.836 47.619 0.00 0.00 0.00 1.40
2489 4419 1.353022 AGTCGGTCCCAGGCAAAAATA 59.647 47.619 0.00 0.00 0.00 1.40
2490 4420 0.112412 AGTCGGTCCCAGGCAAAAAT 59.888 50.000 0.00 0.00 0.00 1.82
2822 4779 8.526147 AGTAGCGTCTTAGAACTTAAAACCATA 58.474 33.333 0.00 0.00 0.00 2.74
2824 4781 6.752168 AGTAGCGTCTTAGAACTTAAAACCA 58.248 36.000 0.00 0.00 0.00 3.67
2972 4930 5.333645 GCCAAGTCTAATGATAACATCTGCG 60.334 44.000 0.00 0.00 35.50 5.18
3013 4971 0.737715 GGAGTGCCGCACTTAGAGTG 60.738 60.000 26.38 3.77 45.44 3.51
3024 4982 3.465403 CAGGAGGAGGGAGTGCCG 61.465 72.222 0.00 0.00 33.83 5.69
3025 4983 3.791586 GCAGGAGGAGGGAGTGCC 61.792 72.222 0.00 0.00 0.00 5.01
3121 5082 3.952323 TGACTTATTCACCTAGACGGAGG 59.048 47.826 0.00 0.00 42.89 4.30
3122 5083 5.776173 ATGACTTATTCACCTAGACGGAG 57.224 43.478 0.00 0.00 36.92 4.63
3123 5084 5.220989 CGAATGACTTATTCACCTAGACGGA 60.221 44.000 0.00 0.00 44.42 4.69
3124 5085 4.976731 CGAATGACTTATTCACCTAGACGG 59.023 45.833 0.00 0.00 44.42 4.79
3125 5086 4.441415 GCGAATGACTTATTCACCTAGACG 59.559 45.833 0.00 0.00 44.42 4.18
3126 5087 4.441415 CGCGAATGACTTATTCACCTAGAC 59.559 45.833 0.00 0.00 44.42 2.59
3127 5088 4.097437 ACGCGAATGACTTATTCACCTAGA 59.903 41.667 15.93 0.00 44.42 2.43
3128 5089 4.360563 ACGCGAATGACTTATTCACCTAG 58.639 43.478 15.93 0.00 44.42 3.02
3129 5090 4.380841 ACGCGAATGACTTATTCACCTA 57.619 40.909 15.93 0.00 44.42 3.08
3130 5091 3.247006 ACGCGAATGACTTATTCACCT 57.753 42.857 15.93 0.00 44.42 4.00
3131 5092 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
3132 5093 5.515626 AGAACTACGCGAATGACTTATTCAC 59.484 40.000 15.93 0.00 44.42 3.18
3133 5094 5.647589 AGAACTACGCGAATGACTTATTCA 58.352 37.500 15.93 0.00 44.42 2.57
3134 5095 6.360148 CCTAGAACTACGCGAATGACTTATTC 59.640 42.308 15.93 3.24 41.46 1.75
3135 5096 6.183360 ACCTAGAACTACGCGAATGACTTATT 60.183 38.462 15.93 0.00 0.00 1.40
3136 5097 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
3137 5098 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
3138 5099 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
3139 5100 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
3140 5101 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
3141 5102 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
3142 5103 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
3143 5104 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
3144 5105 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
3145 5106 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
3146 5107 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
3147 5108 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
3148 5109 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
3149 5110 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
3150 5111 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
3151 5112 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
3152 5113 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
3153 5114 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
3154 5115 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
3155 5116 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
3157 5118 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
3158 5119 9.831737 CATATTTAATTCCTCAAATCGATGACC 57.168 33.333 0.00 0.00 0.00 4.02
3201 5162 9.570468 TCCGTGTAGAAATCTAGTGATATACTT 57.430 33.333 0.00 0.00 40.89 2.24
3202 5163 9.742144 ATCCGTGTAGAAATCTAGTGATATACT 57.258 33.333 0.00 0.00 43.56 2.12
3203 5164 9.776158 CATCCGTGTAGAAATCTAGTGATATAC 57.224 37.037 0.00 0.00 31.70 1.47
3204 5165 9.516546 ACATCCGTGTAGAAATCTAGTGATATA 57.483 33.333 0.00 0.00 36.63 0.86
3205 5166 8.410673 ACATCCGTGTAGAAATCTAGTGATAT 57.589 34.615 0.00 0.00 36.63 1.63
3206 5167 7.818997 ACATCCGTGTAGAAATCTAGTGATA 57.181 36.000 0.00 0.00 36.63 2.15
3207 5168 6.716934 ACATCCGTGTAGAAATCTAGTGAT 57.283 37.500 0.00 0.00 36.63 3.06
3270 5231 9.330063 TCTAGGTCGACGATTTAACTATCTAAA 57.670 33.333 9.92 0.00 0.00 1.85
3271 5232 8.893219 TCTAGGTCGACGATTTAACTATCTAA 57.107 34.615 9.92 0.00 0.00 2.10
3272 5233 8.768955 GTTCTAGGTCGACGATTTAACTATCTA 58.231 37.037 9.92 0.00 0.00 1.98
3273 5234 7.498570 AGTTCTAGGTCGACGATTTAACTATCT 59.501 37.037 9.92 0.00 0.00 1.98
3274 5235 7.638134 AGTTCTAGGTCGACGATTTAACTATC 58.362 38.462 9.92 0.00 0.00 2.08
3275 5236 7.565323 AGTTCTAGGTCGACGATTTAACTAT 57.435 36.000 9.92 0.00 0.00 2.12
3276 5237 6.992063 AGTTCTAGGTCGACGATTTAACTA 57.008 37.500 9.92 2.53 0.00 2.24
3277 5238 5.893897 AGTTCTAGGTCGACGATTTAACT 57.106 39.130 9.92 11.88 0.00 2.24
3278 5239 5.674580 CGTAGTTCTAGGTCGACGATTTAAC 59.325 44.000 9.92 9.89 35.42 2.01
3279 5240 5.727791 GCGTAGTTCTAGGTCGACGATTTAA 60.728 44.000 9.92 0.00 35.42 1.52
3280 5241 4.260375 GCGTAGTTCTAGGTCGACGATTTA 60.260 45.833 9.92 0.00 35.42 1.40
3281 5242 3.486542 GCGTAGTTCTAGGTCGACGATTT 60.487 47.826 9.92 0.00 35.42 2.17
3282 5243 2.031437 GCGTAGTTCTAGGTCGACGATT 59.969 50.000 9.92 0.07 35.42 3.34
3283 5244 1.596727 GCGTAGTTCTAGGTCGACGAT 59.403 52.381 9.92 3.12 35.42 3.73
3284 5245 1.002366 GCGTAGTTCTAGGTCGACGA 58.998 55.000 9.92 0.00 35.42 4.20
3285 5246 0.314898 CGCGTAGTTCTAGGTCGACG 60.315 60.000 9.92 12.97 36.21 5.12
3286 5247 1.002366 TCGCGTAGTTCTAGGTCGAC 58.998 55.000 7.13 7.13 0.00 4.20
3287 5248 1.725641 TTCGCGTAGTTCTAGGTCGA 58.274 50.000 5.77 11.56 0.00 4.20
3288 5249 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
3289 5250 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
3290 5251 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
3291 5252 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
3292 5253 6.910972 TGAATAAGTCATTCGCGTAGTTCTAG 59.089 38.462 5.77 0.00 45.25 2.43
3293 5254 6.690098 GTGAATAAGTCATTCGCGTAGTTCTA 59.310 38.462 5.77 0.00 45.25 2.10
3294 5255 5.515626 GTGAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 45.25 3.01
3295 5256 5.715264 GTGAATAAGTCATTCGCGTAGTTC 58.285 41.667 5.77 0.29 45.25 3.01
3296 5257 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24
3303 5264 3.482472 CGTCTCGGTGAATAAGTCATTCG 59.518 47.826 0.00 0.00 45.25 3.34
3304 5265 3.797256 CCGTCTCGGTGAATAAGTCATTC 59.203 47.826 0.00 0.00 42.73 2.67
3305 5266 3.782046 CCGTCTCGGTGAATAAGTCATT 58.218 45.455 0.00 0.00 42.73 2.57
3306 5267 3.438297 CCGTCTCGGTGAATAAGTCAT 57.562 47.619 0.00 0.00 42.73 3.06
3307 5268 2.933495 CCGTCTCGGTGAATAAGTCA 57.067 50.000 0.00 0.00 42.73 3.41
3319 5280 4.574013 ACATTTAGTACTACCTCCGTCTCG 59.426 45.833 0.91 0.00 0.00 4.04
3320 5281 5.732810 GCACATTTAGTACTACCTCCGTCTC 60.733 48.000 0.91 0.00 0.00 3.36
3321 5282 4.097589 GCACATTTAGTACTACCTCCGTCT 59.902 45.833 0.91 0.00 0.00 4.18
3322 5283 4.357996 GCACATTTAGTACTACCTCCGTC 58.642 47.826 0.91 0.00 0.00 4.79
3323 5284 3.181493 CGCACATTTAGTACTACCTCCGT 60.181 47.826 0.91 0.00 0.00 4.69
3324 5285 3.181493 ACGCACATTTAGTACTACCTCCG 60.181 47.826 0.91 4.05 0.00 4.63
3325 5286 4.142315 TGACGCACATTTAGTACTACCTCC 60.142 45.833 0.91 0.00 0.00 4.30
3326 5287 4.990257 TGACGCACATTTAGTACTACCTC 58.010 43.478 0.91 0.00 0.00 3.85
3327 5288 5.047519 ACTTGACGCACATTTAGTACTACCT 60.048 40.000 0.91 0.00 0.00 3.08
3328 5289 5.166398 ACTTGACGCACATTTAGTACTACC 58.834 41.667 0.91 0.00 0.00 3.18
3331 5292 9.031360 CATATTACTTGACGCACATTTAGTACT 57.969 33.333 0.00 0.00 0.00 2.73
3350 5311 7.074653 TGGTACTCCTTCCAATCCATATTAC 57.925 40.000 0.00 0.00 34.23 1.89
3361 5322 8.270137 TGCTAAAATATATGGTACTCCTTCCA 57.730 34.615 0.00 0.00 38.14 3.53
3365 5326 8.263854 ACACTGCTAAAATATATGGTACTCCT 57.736 34.615 0.00 0.00 34.23 3.69
3408 5369 7.396907 TGATGCATAAAGAAATTCCTTCCTTCA 59.603 33.333 0.00 0.00 34.21 3.02
3424 5385 2.168106 GCACATGGGGTTGATGCATAAA 59.832 45.455 0.00 0.00 36.30 1.40
3487 5448 7.484975 ACGATCTCAAGTTATGTCTTCTTAGG 58.515 38.462 0.00 0.00 0.00 2.69
3488 5449 9.658475 CTACGATCTCAAGTTATGTCTTCTTAG 57.342 37.037 0.00 0.00 0.00 2.18
3522 5483 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3523 5484 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3524 5485 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3525 5486 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3526 5487 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3527 5488 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3528 5489 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3529 5490 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3530 5491 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3531 5492 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
3532 5493 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
3533 5494 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
3534 5495 8.469200 TCATCCATTTTGATGACAAGTATTTCC 58.531 33.333 0.00 0.00 44.65 3.13
3546 5507 5.129815 ACATCCCCTTTCATCCATTTTGATG 59.870 40.000 0.00 0.00 42.84 3.07
3547 5508 5.282946 ACATCCCCTTTCATCCATTTTGAT 58.717 37.500 0.00 0.00 0.00 2.57
3548 5509 4.686891 ACATCCCCTTTCATCCATTTTGA 58.313 39.130 0.00 0.00 0.00 2.69
3549 5510 6.552350 AGATACATCCCCTTTCATCCATTTTG 59.448 38.462 0.00 0.00 0.00 2.44
3550 5511 6.686544 AGATACATCCCCTTTCATCCATTTT 58.313 36.000 0.00 0.00 0.00 1.82
3551 5512 6.285329 AGATACATCCCCTTTCATCCATTT 57.715 37.500 0.00 0.00 0.00 2.32
3552 5513 5.937492 AGATACATCCCCTTTCATCCATT 57.063 39.130 0.00 0.00 0.00 3.16
3553 5514 6.334296 TCTAGATACATCCCCTTTCATCCAT 58.666 40.000 0.00 0.00 0.00 3.41
3554 5515 5.726560 TCTAGATACATCCCCTTTCATCCA 58.273 41.667 0.00 0.00 0.00 3.41
3555 5516 6.214412 ACATCTAGATACATCCCCTTTCATCC 59.786 42.308 4.54 0.00 0.00 3.51
3556 5517 7.251321 ACATCTAGATACATCCCCTTTCATC 57.749 40.000 4.54 0.00 0.00 2.92
3557 5518 8.923838 ATACATCTAGATACATCCCCTTTCAT 57.076 34.615 4.54 0.00 0.00 2.57
3558 5519 8.742125 AATACATCTAGATACATCCCCTTTCA 57.258 34.615 4.54 0.00 0.00 2.69
3562 5523 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
3600 5561 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
3607 5568 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
3608 5569 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
3609 5570 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
3610 5571 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
3611 5572 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3612 5573 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3613 5574 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3614 5575 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3615 5576 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3616 5577 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3617 5578 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3618 5579 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3619 5580 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3620 5581 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3621 5582 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3622 5583 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3623 5584 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3624 5585 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3625 5586 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3626 5587 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3627 5588 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3628 5589 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
3629 5590 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3630 5591 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
3631 5592 2.518825 CCTACTCCCTCCGTCCGG 60.519 72.222 0.00 0.00 0.00 5.14
3632 5593 1.823041 GTCCTACTCCCTCCGTCCG 60.823 68.421 0.00 0.00 0.00 4.79
3633 5594 0.842635 TAGTCCTACTCCCTCCGTCC 59.157 60.000 0.00 0.00 0.00 4.79
3634 5595 2.955342 ATAGTCCTACTCCCTCCGTC 57.045 55.000 0.00 0.00 0.00 4.79
3635 5596 3.915073 TCATATAGTCCTACTCCCTCCGT 59.085 47.826 0.00 0.00 0.00 4.69
3636 5597 4.571369 TCATATAGTCCTACTCCCTCCG 57.429 50.000 0.00 0.00 0.00 4.63
3637 5598 8.919145 CAATTATCATATAGTCCTACTCCCTCC 58.081 40.741 0.00 0.00 0.00 4.30
3638 5599 9.702253 TCAATTATCATATAGTCCTACTCCCTC 57.298 37.037 0.00 0.00 0.00 4.30
3735 5696 6.575162 AAGCACGAGGAAAGTTATTCAATT 57.425 33.333 0.00 0.00 0.00 2.32
3850 9225 2.737252 GGTTCTTTGAATCTCGAAGCGT 59.263 45.455 0.00 0.00 37.70 5.07
3879 9254 8.783660 ATTCTGGGAATAATAGTCTCACAGTA 57.216 34.615 4.84 0.00 0.00 2.74
4174 9555 5.804692 TTGCACTAAAGAAGAACGAACAA 57.195 34.783 0.00 0.00 0.00 2.83
4240 9621 4.619973 ACATTGTGCTGTTACCAACAATG 58.380 39.130 22.00 22.00 45.55 2.82
4481 9862 6.257630 GCTTTCAACTGAGGTTAGAGATCATC 59.742 42.308 0.00 0.00 33.88 2.92
4482 9863 6.112058 GCTTTCAACTGAGGTTAGAGATCAT 58.888 40.000 0.00 0.00 33.88 2.45
4611 9995 9.454859 AGTGAAGGAAATAATTTTCTGACCTAG 57.545 33.333 0.00 0.00 40.91 3.02
4627 10011 3.652869 AGGTCATTGGAGAGTGAAGGAAA 59.347 43.478 0.00 0.00 0.00 3.13
4653 10037 2.757099 CCCTGGATGTTGCTGGCC 60.757 66.667 0.00 0.00 0.00 5.36
4672 10057 5.366482 AAAAAGGTTTACCAAGCACCAAT 57.634 34.783 1.13 0.00 38.89 3.16
4774 10160 4.215613 CACTAAAAGGGCAGAACCTAACAC 59.784 45.833 0.00 0.00 40.87 3.32
4866 10253 8.883954 TTCATCTCAAGCTATTTCTGATACTG 57.116 34.615 0.00 0.00 0.00 2.74
4880 10267 3.760684 ACACAGGGAAATTCATCTCAAGC 59.239 43.478 0.00 0.00 0.00 4.01
4989 10376 0.462375 ACACGCGCCATTATCAGGTA 59.538 50.000 5.73 0.00 0.00 3.08
5002 10389 0.796312 AGGCACTGATTTAACACGCG 59.204 50.000 3.53 3.53 37.18 6.01
5005 10392 5.402398 GGATTTGAGGCACTGATTTAACAC 58.598 41.667 0.00 0.00 41.55 3.32
5008 10395 4.706476 CAGGGATTTGAGGCACTGATTTAA 59.294 41.667 0.00 0.00 41.55 1.52
5032 10419 6.610075 AAATCCTTTTGTGACTGCCATTAT 57.390 33.333 0.00 0.00 0.00 1.28
5034 10421 4.961438 AAATCCTTTTGTGACTGCCATT 57.039 36.364 0.00 0.00 0.00 3.16
5035 10422 6.418057 TTTAAATCCTTTTGTGACTGCCAT 57.582 33.333 0.00 0.00 0.00 4.40
5036 10423 5.860941 TTTAAATCCTTTTGTGACTGCCA 57.139 34.783 0.00 0.00 0.00 4.92
5110 10521 3.454082 TGGGTGCACCTTTGAAATTCTTT 59.546 39.130 33.91 0.00 41.11 2.52
5138 10549 2.010582 TTTTGCAACCGAGTGCCCAC 62.011 55.000 0.00 0.00 44.26 4.61
5158 10569 3.463533 TTTGCCATTCGTGACATTACG 57.536 42.857 0.00 0.00 44.98 3.18
5353 10764 3.459598 TCCCAGGAGGAAGGAAACATATG 59.540 47.826 0.00 0.00 43.78 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.