Multiple sequence alignment - TraesCS3A01G301800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G301800 chr3A 100.000 4901 0 0 1 4901 535215536 535220436 0.000000e+00 9051.0
1 TraesCS3A01G301800 chr3A 93.438 320 21 0 1898 2217 535217273 535217592 4.440000e-130 475.0
2 TraesCS3A01G301800 chr3A 93.438 320 21 0 1738 2057 535217433 535217752 4.440000e-130 475.0
3 TraesCS3A01G301800 chr3A 91.117 349 29 2 1 348 709783583 709783236 5.740000e-129 472.0
4 TraesCS3A01G301800 chr3A 93.750 160 10 0 2058 2217 535217273 535217432 1.760000e-59 241.0
5 TraesCS3A01G301800 chr3A 93.750 160 10 0 1738 1897 535217593 535217752 1.760000e-59 241.0
6 TraesCS3A01G301800 chr3B 95.493 2840 100 18 2070 4901 540760889 540758070 0.000000e+00 4510.0
7 TraesCS3A01G301800 chr3B 88.181 863 61 23 503 1356 540762159 540761329 0.000000e+00 990.0
8 TraesCS3A01G301800 chr3B 91.155 554 28 8 1363 1896 540761295 540760743 0.000000e+00 732.0
9 TraesCS3A01G301800 chr3B 94.558 147 8 0 1910 2056 540760889 540760743 1.370000e-55 228.0
10 TraesCS3A01G301800 chr3D 95.872 2592 83 12 1898 4482 414915011 414912437 0.000000e+00 4172.0
11 TraesCS3A01G301800 chr3D 89.068 1610 111 21 486 2056 414916276 414914693 0.000000e+00 1938.0
12 TraesCS3A01G301800 chr3D 89.671 426 32 4 4477 4901 414912284 414911870 2.600000e-147 532.0
13 TraesCS3A01G301800 chr3D 95.625 160 7 0 2058 2217 414915011 414914852 1.750000e-64 257.0
14 TraesCS3A01G301800 chr3D 92.453 159 12 0 1738 1896 414914851 414914693 1.370000e-55 228.0
15 TraesCS3A01G301800 chr1A 91.931 347 27 1 1 346 486572821 486573167 7.380000e-133 484.0
16 TraesCS3A01G301800 chr1A 90.490 347 32 1 1 346 578780256 578779910 1.610000e-124 457.0
17 TraesCS3A01G301800 chr6A 91.429 350 22 8 1 346 2405918 2405573 1.600000e-129 473.0
18 TraesCS3A01G301800 chr2A 90.883 351 28 4 1 348 535704954 535704605 7.430000e-128 468.0
19 TraesCS3A01G301800 chr5D 90.883 351 25 6 1 348 467427187 467427533 9.610000e-127 464.0
20 TraesCS3A01G301800 chr2D 90.313 351 30 4 1 348 620188457 620188108 1.610000e-124 457.0
21 TraesCS3A01G301800 chr4A 89.607 356 36 1 1 355 597605420 597605065 7.480000e-123 451.0
22 TraesCS3A01G301800 chr4A 89.607 356 36 1 1 355 597624918 597624563 7.480000e-123 451.0
23 TraesCS3A01G301800 chr1B 79.273 275 49 8 4632 4901 133671273 133671002 8.380000e-43 185.0
24 TraesCS3A01G301800 chr5B 82.011 189 31 3 4686 4873 92217096 92217282 1.830000e-34 158.0
25 TraesCS3A01G301800 chr7A 88.889 72 7 1 4831 4901 94913417 94913346 2.430000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G301800 chr3A 535215536 535220436 4900 False 2096.6 9051 94.87520 1 4901 5 chr3A.!!$F1 4900
1 TraesCS3A01G301800 chr3B 540758070 540762159 4089 True 1615.0 4510 92.34675 503 4901 4 chr3B.!!$R1 4398
2 TraesCS3A01G301800 chr3D 414911870 414916276 4406 True 1425.4 4172 92.53780 486 4901 5 chr3D.!!$R1 4415

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 573 0.037590 CCTTTTCCCCATCGGACACA 59.962 55.000 0.00 0.0 41.83 3.72 F
1259 1272 0.105913 ATGTTTCCGTGTTGGGGGTT 60.106 50.000 0.00 0.0 38.76 4.11 F
1834 1876 0.251033 TGCAACCTTGAGCAGAGCAT 60.251 50.000 0.00 0.0 35.51 3.79 F
1835 1877 0.886563 GCAACCTTGAGCAGAGCATT 59.113 50.000 0.00 0.0 0.00 3.56 F
1836 1878 1.402456 GCAACCTTGAGCAGAGCATTG 60.402 52.381 0.00 0.0 0.00 2.82 F
3238 3287 0.179163 GCCGGACAGCTAATTGTTGC 60.179 55.000 5.05 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 1857 0.251033 ATGCTCTGCTCAAGGTTGCA 60.251 50.000 0.00 0.0 37.63 4.08 R
2710 2758 0.257039 CAGGCCTACAAGGGAAGCAT 59.743 55.000 3.98 0.0 35.37 3.79 R
2712 2760 0.909623 TACAGGCCTACAAGGGAAGC 59.090 55.000 3.98 0.0 35.37 3.86 R
3220 3269 1.164411 TGCAACAATTAGCTGTCCGG 58.836 50.000 0.00 0.0 0.00 5.14 R
3714 3767 1.664151 GTTTCCACCCGATGTTCGATC 59.336 52.381 0.00 0.0 43.74 3.69 R
4360 4416 0.250901 AAACCTCCATGCTCGCTTGT 60.251 50.000 4.43 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.864334 CTGGGCGGATGTGGAGGC 62.864 72.222 0.00 0.00 0.00 4.70
35 36 4.400961 GGCGGCAGCTGGAAGAGT 62.401 66.667 17.12 0.00 44.37 3.24
36 37 2.817396 GCGGCAGCTGGAAGAGTC 60.817 66.667 17.12 0.00 41.01 3.36
37 38 2.507992 CGGCAGCTGGAAGAGTCG 60.508 66.667 17.12 0.00 34.07 4.18
38 39 2.817396 GGCAGCTGGAAGAGTCGC 60.817 66.667 17.12 0.00 34.07 5.19
39 40 2.817396 GCAGCTGGAAGAGTCGCC 60.817 66.667 17.12 0.00 34.07 5.54
40 41 2.507992 CAGCTGGAAGAGTCGCCG 60.508 66.667 5.57 0.00 34.07 6.46
41 42 3.764466 AGCTGGAAGAGTCGCCGG 61.764 66.667 0.00 0.00 34.07 6.13
43 44 4.069232 CTGGAAGAGTCGCCGGCA 62.069 66.667 28.98 11.20 34.07 5.69
44 45 3.589654 CTGGAAGAGTCGCCGGCAA 62.590 63.158 28.98 4.39 34.07 4.52
45 46 2.358247 GGAAGAGTCGCCGGCAAA 60.358 61.111 28.98 11.42 0.00 3.68
46 47 1.964373 GGAAGAGTCGCCGGCAAAA 60.964 57.895 28.98 8.35 0.00 2.44
47 48 1.305930 GGAAGAGTCGCCGGCAAAAT 61.306 55.000 28.98 13.50 0.00 1.82
48 49 0.179189 GAAGAGTCGCCGGCAAAATG 60.179 55.000 28.98 9.94 0.00 2.32
49 50 1.586154 AAGAGTCGCCGGCAAAATGG 61.586 55.000 28.98 9.08 0.00 3.16
50 51 3.051392 GAGTCGCCGGCAAAATGGG 62.051 63.158 28.98 8.23 0.00 4.00
51 52 4.794439 GTCGCCGGCAAAATGGGC 62.794 66.667 28.98 6.40 43.42 5.36
78 79 4.452733 GGTGACGAAGGAGCCGGG 62.453 72.222 2.18 0.00 0.00 5.73
79 80 4.452733 GTGACGAAGGAGCCGGGG 62.453 72.222 2.18 0.00 0.00 5.73
94 95 4.660938 GGGGCGAGGGTTGCTTGT 62.661 66.667 0.00 0.00 0.00 3.16
95 96 2.597510 GGGCGAGGGTTGCTTGTT 60.598 61.111 0.00 0.00 0.00 2.83
96 97 2.644992 GGCGAGGGTTGCTTGTTG 59.355 61.111 0.00 0.00 0.00 3.33
97 98 2.644992 GCGAGGGTTGCTTGTTGG 59.355 61.111 0.00 0.00 0.00 3.77
98 99 2.644992 CGAGGGTTGCTTGTTGGC 59.355 61.111 0.00 0.00 0.00 4.52
99 100 1.898574 CGAGGGTTGCTTGTTGGCT 60.899 57.895 0.00 0.00 0.00 4.75
100 101 1.662044 GAGGGTTGCTTGTTGGCTG 59.338 57.895 0.00 0.00 0.00 4.85
101 102 1.809567 GAGGGTTGCTTGTTGGCTGG 61.810 60.000 0.00 0.00 0.00 4.85
102 103 2.736531 GGTTGCTTGTTGGCTGGG 59.263 61.111 0.00 0.00 0.00 4.45
103 104 2.736531 GTTGCTTGTTGGCTGGGG 59.263 61.111 0.00 0.00 0.00 4.96
104 105 2.523902 TTGCTTGTTGGCTGGGGG 60.524 61.111 0.00 0.00 0.00 5.40
105 106 3.080158 TTGCTTGTTGGCTGGGGGA 62.080 57.895 0.00 0.00 0.00 4.81
106 107 2.677875 GCTTGTTGGCTGGGGGAG 60.678 66.667 0.00 0.00 0.00 4.30
107 108 2.036256 CTTGTTGGCTGGGGGAGG 59.964 66.667 0.00 0.00 0.00 4.30
108 109 3.589542 TTGTTGGCTGGGGGAGGG 61.590 66.667 0.00 0.00 0.00 4.30
109 110 4.608514 TGTTGGCTGGGGGAGGGA 62.609 66.667 0.00 0.00 0.00 4.20
110 111 3.264845 GTTGGCTGGGGGAGGGAA 61.265 66.667 0.00 0.00 0.00 3.97
111 112 2.941025 TTGGCTGGGGGAGGGAAG 60.941 66.667 0.00 0.00 0.00 3.46
115 116 2.372688 CTGGGGGAGGGAAGGCTA 59.627 66.667 0.00 0.00 0.00 3.93
116 117 1.307866 CTGGGGGAGGGAAGGCTAA 60.308 63.158 0.00 0.00 0.00 3.09
117 118 0.699231 CTGGGGGAGGGAAGGCTAAT 60.699 60.000 0.00 0.00 0.00 1.73
118 119 0.993509 TGGGGGAGGGAAGGCTAATG 60.994 60.000 0.00 0.00 0.00 1.90
119 120 0.994050 GGGGGAGGGAAGGCTAATGT 60.994 60.000 0.00 0.00 0.00 2.71
120 121 0.183731 GGGGAGGGAAGGCTAATGTG 59.816 60.000 0.00 0.00 0.00 3.21
121 122 0.466372 GGGAGGGAAGGCTAATGTGC 60.466 60.000 0.00 0.00 0.00 4.57
131 132 2.247311 GCTAATGTGCCACAAACGAG 57.753 50.000 0.00 0.00 0.00 4.18
132 133 1.729149 GCTAATGTGCCACAAACGAGC 60.729 52.381 0.00 4.80 0.00 5.03
133 134 0.515127 TAATGTGCCACAAACGAGCG 59.485 50.000 0.00 0.00 0.00 5.03
134 135 2.128853 AATGTGCCACAAACGAGCGG 62.129 55.000 0.00 0.00 0.00 5.52
135 136 4.025401 GTGCCACAAACGAGCGGG 62.025 66.667 0.00 0.00 0.00 6.13
150 151 4.576374 GGGCCCGGGGATAGGAGT 62.576 72.222 25.28 0.00 0.00 3.85
151 152 2.529753 GGCCCGGGGATAGGAGTA 59.470 66.667 25.28 0.00 0.00 2.59
152 153 1.609794 GGCCCGGGGATAGGAGTAG 60.610 68.421 25.28 0.00 0.00 2.57
153 154 1.609794 GCCCGGGGATAGGAGTAGG 60.610 68.421 25.28 0.00 0.00 3.18
154 155 1.609794 CCCGGGGATAGGAGTAGGC 60.610 68.421 14.71 0.00 0.00 3.93
155 156 1.977544 CCGGGGATAGGAGTAGGCG 60.978 68.421 0.00 0.00 0.00 5.52
156 157 1.074423 CGGGGATAGGAGTAGGCGA 59.926 63.158 0.00 0.00 0.00 5.54
157 158 0.961358 CGGGGATAGGAGTAGGCGAG 60.961 65.000 0.00 0.00 0.00 5.03
158 159 1.252215 GGGGATAGGAGTAGGCGAGC 61.252 65.000 0.00 0.00 0.00 5.03
159 160 0.539901 GGGATAGGAGTAGGCGAGCA 60.540 60.000 0.00 0.00 0.00 4.26
160 161 1.329256 GGATAGGAGTAGGCGAGCAA 58.671 55.000 0.00 0.00 0.00 3.91
161 162 1.271102 GGATAGGAGTAGGCGAGCAAG 59.729 57.143 0.00 0.00 0.00 4.01
162 163 0.676736 ATAGGAGTAGGCGAGCAAGC 59.323 55.000 0.00 0.00 0.00 4.01
163 164 1.725557 TAGGAGTAGGCGAGCAAGCG 61.726 60.000 0.00 0.00 38.18 4.68
200 201 2.395690 CGTCGACGCAAATCAGGC 59.604 61.111 26.59 0.00 0.00 4.85
201 202 2.094659 CGTCGACGCAAATCAGGCT 61.095 57.895 26.59 0.00 0.00 4.58
202 203 0.800683 CGTCGACGCAAATCAGGCTA 60.801 55.000 26.59 0.00 0.00 3.93
203 204 1.355971 GTCGACGCAAATCAGGCTAA 58.644 50.000 0.00 0.00 0.00 3.09
204 205 1.730064 GTCGACGCAAATCAGGCTAAA 59.270 47.619 0.00 0.00 0.00 1.85
205 206 2.158841 GTCGACGCAAATCAGGCTAAAA 59.841 45.455 0.00 0.00 0.00 1.52
206 207 2.809119 TCGACGCAAATCAGGCTAAAAA 59.191 40.909 0.00 0.00 0.00 1.94
221 222 2.295904 AAAAATGGGCCGGGAATGG 58.704 52.632 2.18 0.00 0.00 3.16
222 223 1.271127 AAAAATGGGCCGGGAATGGG 61.271 55.000 2.18 0.00 0.00 4.00
223 224 2.469563 AAAATGGGCCGGGAATGGGT 62.470 55.000 2.18 0.00 0.00 4.51
224 225 2.871795 AAATGGGCCGGGAATGGGTC 62.872 60.000 2.18 0.00 0.00 4.46
240 241 4.965348 TCGCCCGCGGACGAAAAA 62.965 61.111 34.30 11.97 43.93 1.94
241 242 4.729798 CGCCCGCGGACGAAAAAC 62.730 66.667 30.91 4.71 43.93 2.43
244 245 3.037249 CCGCGGACGAAAAACGGA 61.037 61.111 24.07 0.00 46.71 4.69
245 246 3.285776 CCGCGGACGAAAAACGGAC 62.286 63.158 24.07 0.00 46.71 4.79
251 252 4.344109 CGAAAAACGGACGCGCGT 62.344 61.111 38.52 38.52 38.46 6.01
252 253 2.496171 GAAAAACGGACGCGCGTC 60.496 61.111 45.60 45.60 43.87 5.19
263 264 3.484547 GCGCGTCCGTTTGGGTAG 61.485 66.667 8.43 0.00 37.00 3.18
264 265 2.812178 CGCGTCCGTTTGGGTAGG 60.812 66.667 0.00 0.00 37.00 3.18
265 266 3.122971 GCGTCCGTTTGGGTAGGC 61.123 66.667 0.00 0.00 37.00 3.93
266 267 2.812178 CGTCCGTTTGGGTAGGCG 60.812 66.667 0.00 0.00 37.00 5.52
267 268 3.122971 GTCCGTTTGGGTAGGCGC 61.123 66.667 0.00 0.00 37.00 6.53
268 269 4.745751 TCCGTTTGGGTAGGCGCG 62.746 66.667 0.00 0.00 37.00 6.86
270 271 3.045492 CGTTTGGGTAGGCGCGTT 61.045 61.111 8.36 0.00 0.00 4.84
271 272 2.559330 GTTTGGGTAGGCGCGTTG 59.441 61.111 8.36 0.00 0.00 4.10
272 273 2.670251 TTTGGGTAGGCGCGTTGG 60.670 61.111 8.36 0.00 0.00 3.77
273 274 4.708386 TTGGGTAGGCGCGTTGGG 62.708 66.667 8.36 0.00 0.00 4.12
282 283 3.045492 CGCGTTGGGCCGTTACTT 61.045 61.111 0.00 0.00 38.94 2.24
283 284 2.609759 CGCGTTGGGCCGTTACTTT 61.610 57.895 0.00 0.00 38.94 2.66
284 285 1.655885 GCGTTGGGCCGTTACTTTT 59.344 52.632 0.00 0.00 34.80 2.27
285 286 0.662077 GCGTTGGGCCGTTACTTTTG 60.662 55.000 0.00 0.00 34.80 2.44
286 287 0.664224 CGTTGGGCCGTTACTTTTGT 59.336 50.000 0.00 0.00 0.00 2.83
287 288 1.334329 CGTTGGGCCGTTACTTTTGTC 60.334 52.381 0.00 0.00 0.00 3.18
288 289 1.001048 GTTGGGCCGTTACTTTTGTCC 60.001 52.381 0.00 0.00 0.00 4.02
289 290 0.885596 TGGGCCGTTACTTTTGTCCG 60.886 55.000 0.00 0.00 0.00 4.79
290 291 1.208358 GGCCGTTACTTTTGTCCGC 59.792 57.895 0.00 0.00 0.00 5.54
291 292 1.508808 GGCCGTTACTTTTGTCCGCA 61.509 55.000 0.00 0.00 0.00 5.69
292 293 0.385098 GCCGTTACTTTTGTCCGCAC 60.385 55.000 0.00 0.00 0.00 5.34
293 294 0.236449 CCGTTACTTTTGTCCGCACC 59.764 55.000 0.00 0.00 0.00 5.01
294 295 0.111001 CGTTACTTTTGTCCGCACCG 60.111 55.000 0.00 0.00 0.00 4.94
295 296 1.219646 GTTACTTTTGTCCGCACCGA 58.780 50.000 0.00 0.00 0.00 4.69
296 297 1.070376 GTTACTTTTGTCCGCACCGAC 60.070 52.381 0.00 0.00 0.00 4.79
297 298 0.600782 TACTTTTGTCCGCACCGACC 60.601 55.000 0.00 0.00 31.35 4.79
298 299 2.592287 TTTTGTCCGCACCGACCC 60.592 61.111 0.00 0.00 31.35 4.46
299 300 3.402095 TTTTGTCCGCACCGACCCA 62.402 57.895 0.00 0.00 31.35 4.51
300 301 2.888464 TTTTGTCCGCACCGACCCAA 62.888 55.000 0.00 0.00 31.35 4.12
301 302 2.888464 TTTGTCCGCACCGACCCAAA 62.888 55.000 0.00 0.00 31.35 3.28
302 303 2.359478 GTCCGCACCGACCCAAAT 60.359 61.111 0.00 0.00 0.00 2.32
303 304 2.359354 TCCGCACCGACCCAAATG 60.359 61.111 0.00 0.00 0.00 2.32
304 305 3.439540 CCGCACCGACCCAAATGG 61.440 66.667 0.00 0.00 41.37 3.16
305 306 2.359354 CGCACCGACCCAAATGGA 60.359 61.111 0.00 0.00 37.39 3.41
306 307 2.686816 CGCACCGACCCAAATGGAC 61.687 63.158 0.00 0.00 37.39 4.02
310 311 3.177600 CGACCCAAATGGACGCAG 58.822 61.111 0.00 0.00 44.79 5.18
311 312 1.375396 CGACCCAAATGGACGCAGA 60.375 57.895 0.00 0.00 44.79 4.26
312 313 1.635663 CGACCCAAATGGACGCAGAC 61.636 60.000 0.00 0.00 44.79 3.51
313 314 1.635663 GACCCAAATGGACGCAGACG 61.636 60.000 0.00 0.00 41.10 4.18
314 315 1.375396 CCCAAATGGACGCAGACGA 60.375 57.895 0.00 0.00 44.16 4.20
315 316 0.953471 CCCAAATGGACGCAGACGAA 60.953 55.000 0.00 0.00 44.16 3.85
316 317 0.165944 CCAAATGGACGCAGACGAAC 59.834 55.000 0.00 0.00 44.16 3.95
317 318 0.865111 CAAATGGACGCAGACGAACA 59.135 50.000 0.00 0.00 43.93 3.18
318 319 1.262950 CAAATGGACGCAGACGAACAA 59.737 47.619 0.00 0.00 43.93 2.83
319 320 1.588674 AATGGACGCAGACGAACAAA 58.411 45.000 0.00 0.00 43.93 2.83
320 321 1.588674 ATGGACGCAGACGAACAAAA 58.411 45.000 0.00 0.00 43.93 2.44
321 322 1.588674 TGGACGCAGACGAACAAAAT 58.411 45.000 0.00 0.00 43.93 1.82
322 323 1.262950 TGGACGCAGACGAACAAAATG 59.737 47.619 0.00 0.00 43.93 2.32
323 324 1.399727 GGACGCAGACGAACAAAATGG 60.400 52.381 0.00 0.00 43.93 3.16
324 325 0.591170 ACGCAGACGAACAAAATGGG 59.409 50.000 0.00 0.00 43.93 4.00
325 326 0.591170 CGCAGACGAACAAAATGGGT 59.409 50.000 0.00 0.00 43.93 4.51
326 327 1.399727 CGCAGACGAACAAAATGGGTC 60.400 52.381 0.00 0.00 43.93 4.46
327 328 1.399727 GCAGACGAACAAAATGGGTCG 60.400 52.381 0.00 0.00 35.85 4.79
328 329 0.872388 AGACGAACAAAATGGGTCGC 59.128 50.000 0.00 0.00 33.95 5.19
329 330 0.109919 GACGAACAAAATGGGTCGCC 60.110 55.000 0.00 0.00 33.95 5.54
330 331 1.211709 CGAACAAAATGGGTCGCCC 59.788 57.895 7.87 7.87 45.71 6.13
331 332 1.241315 CGAACAAAATGGGTCGCCCT 61.241 55.000 14.76 0.10 45.70 5.19
332 333 1.828979 GAACAAAATGGGTCGCCCTA 58.171 50.000 14.76 0.00 45.70 3.53
333 334 2.375146 GAACAAAATGGGTCGCCCTAT 58.625 47.619 14.76 0.00 45.70 2.57
334 335 2.525105 ACAAAATGGGTCGCCCTATT 57.475 45.000 14.76 2.20 45.70 1.73
335 336 2.099405 ACAAAATGGGTCGCCCTATTG 58.901 47.619 14.76 16.34 45.70 1.90
336 337 1.408702 CAAAATGGGTCGCCCTATTGG 59.591 52.381 14.76 5.29 45.70 3.16
337 338 0.923358 AAATGGGTCGCCCTATTGGA 59.077 50.000 14.76 0.00 45.70 3.53
338 339 0.474184 AATGGGTCGCCCTATTGGAG 59.526 55.000 14.76 0.00 45.70 3.86
339 340 0.694444 ATGGGTCGCCCTATTGGAGT 60.694 55.000 14.76 0.00 45.70 3.85
340 341 0.912487 TGGGTCGCCCTATTGGAGTT 60.912 55.000 14.76 0.00 45.70 3.01
341 342 0.463833 GGGTCGCCCTATTGGAGTTG 60.464 60.000 7.58 0.00 41.34 3.16
342 343 1.095807 GGTCGCCCTATTGGAGTTGC 61.096 60.000 0.00 0.00 35.07 4.17
343 344 0.107654 GTCGCCCTATTGGAGTTGCT 60.108 55.000 0.00 0.00 35.07 3.91
344 345 0.178068 TCGCCCTATTGGAGTTGCTC 59.822 55.000 0.00 0.00 35.07 4.26
345 346 0.179000 CGCCCTATTGGAGTTGCTCT 59.821 55.000 0.00 0.00 35.39 4.09
346 347 1.412710 CGCCCTATTGGAGTTGCTCTA 59.587 52.381 0.00 0.00 35.39 2.43
347 348 2.158957 CGCCCTATTGGAGTTGCTCTAA 60.159 50.000 0.00 0.00 35.57 2.10
348 349 3.206964 GCCCTATTGGAGTTGCTCTAAC 58.793 50.000 0.00 0.00 34.03 2.34
385 386 7.448748 AAAATATTGGAGTTGCTCTAAACGT 57.551 32.000 0.00 0.00 34.82 3.99
386 387 6.422776 AATATTGGAGTTGCTCTAAACGTG 57.577 37.500 0.00 0.00 34.82 4.49
387 388 1.508632 TGGAGTTGCTCTAAACGTGC 58.491 50.000 0.00 0.00 35.13 5.34
388 389 1.202592 TGGAGTTGCTCTAAACGTGCA 60.203 47.619 0.00 0.00 40.10 4.57
389 390 2.076863 GGAGTTGCTCTAAACGTGCAT 58.923 47.619 0.00 0.00 41.29 3.96
390 391 2.484264 GGAGTTGCTCTAAACGTGCATT 59.516 45.455 0.00 0.00 41.29 3.56
391 392 3.058224 GGAGTTGCTCTAAACGTGCATTT 60.058 43.478 0.00 0.00 41.29 2.32
392 393 4.147219 AGTTGCTCTAAACGTGCATTTC 57.853 40.909 0.00 0.00 41.29 2.17
393 394 3.563808 AGTTGCTCTAAACGTGCATTTCA 59.436 39.130 0.00 0.00 41.29 2.69
394 395 3.536158 TGCTCTAAACGTGCATTTCAC 57.464 42.857 0.00 0.00 42.23 3.18
410 411 8.814235 GTGCATTTCACGTACATTATTACTAGT 58.186 33.333 0.00 0.00 35.76 2.57
411 412 9.027129 TGCATTTCACGTACATTATTACTAGTC 57.973 33.333 0.00 0.00 0.00 2.59
412 413 9.027129 GCATTTCACGTACATTATTACTAGTCA 57.973 33.333 0.00 0.00 0.00 3.41
431 432 9.162764 ACTAGTCATGTAAAACATACAATCACC 57.837 33.333 0.00 0.00 36.53 4.02
432 433 7.994425 AGTCATGTAAAACATACAATCACCA 57.006 32.000 0.00 0.00 36.53 4.17
433 434 8.044060 AGTCATGTAAAACATACAATCACCAG 57.956 34.615 0.00 0.00 36.53 4.00
434 435 6.747280 GTCATGTAAAACATACAATCACCAGC 59.253 38.462 0.00 0.00 36.53 4.85
435 436 6.432472 TCATGTAAAACATACAATCACCAGCA 59.568 34.615 0.00 0.00 36.53 4.41
436 437 6.641169 TGTAAAACATACAATCACCAGCAA 57.359 33.333 0.00 0.00 0.00 3.91
437 438 7.225784 TGTAAAACATACAATCACCAGCAAT 57.774 32.000 0.00 0.00 0.00 3.56
438 439 8.341892 TGTAAAACATACAATCACCAGCAATA 57.658 30.769 0.00 0.00 0.00 1.90
439 440 8.797438 TGTAAAACATACAATCACCAGCAATAA 58.203 29.630 0.00 0.00 0.00 1.40
440 441 9.632807 GTAAAACATACAATCACCAGCAATAAA 57.367 29.630 0.00 0.00 0.00 1.40
442 443 9.553064 AAAACATACAATCACCAGCAATAAAAA 57.447 25.926 0.00 0.00 0.00 1.94
443 444 9.723601 AAACATACAATCACCAGCAATAAAAAT 57.276 25.926 0.00 0.00 0.00 1.82
446 447 9.467258 CATACAATCACCAGCAATAAAAATAGG 57.533 33.333 0.00 0.00 0.00 2.57
447 448 7.716799 ACAATCACCAGCAATAAAAATAGGA 57.283 32.000 0.00 0.00 0.00 2.94
448 449 8.133024 ACAATCACCAGCAATAAAAATAGGAA 57.867 30.769 0.00 0.00 0.00 3.36
449 450 8.034804 ACAATCACCAGCAATAAAAATAGGAAC 58.965 33.333 0.00 0.00 0.00 3.62
450 451 7.961326 ATCACCAGCAATAAAAATAGGAACT 57.039 32.000 0.00 0.00 46.37 3.01
451 452 7.775053 TCACCAGCAATAAAAATAGGAACTT 57.225 32.000 0.00 0.00 41.75 2.66
452 453 8.189119 TCACCAGCAATAAAAATAGGAACTTT 57.811 30.769 0.00 0.00 41.75 2.66
453 454 8.646900 TCACCAGCAATAAAAATAGGAACTTTT 58.353 29.630 0.00 0.00 41.75 2.27
454 455 8.925700 CACCAGCAATAAAAATAGGAACTTTTC 58.074 33.333 0.00 0.00 41.75 2.29
463 464 3.543112 GGAACTTTTCCCCCACCAA 57.457 52.632 0.00 0.00 44.30 3.67
464 465 1.796017 GGAACTTTTCCCCCACCAAA 58.204 50.000 0.00 0.00 44.30 3.28
465 466 2.334977 GGAACTTTTCCCCCACCAAAT 58.665 47.619 0.00 0.00 44.30 2.32
466 467 3.512496 GGAACTTTTCCCCCACCAAATA 58.488 45.455 0.00 0.00 44.30 1.40
467 468 3.259876 GGAACTTTTCCCCCACCAAATAC 59.740 47.826 0.00 0.00 44.30 1.89
468 469 2.521126 ACTTTTCCCCCACCAAATACG 58.479 47.619 0.00 0.00 0.00 3.06
469 470 2.158430 ACTTTTCCCCCACCAAATACGT 60.158 45.455 0.00 0.00 0.00 3.57
470 471 3.074242 ACTTTTCCCCCACCAAATACGTA 59.926 43.478 0.00 0.00 0.00 3.57
471 472 2.785540 TTCCCCCACCAAATACGTAC 57.214 50.000 0.00 0.00 0.00 3.67
472 473 1.654159 TCCCCCACCAAATACGTACA 58.346 50.000 0.00 0.00 0.00 2.90
473 474 1.983691 TCCCCCACCAAATACGTACAA 59.016 47.619 0.00 0.00 0.00 2.41
474 475 2.577105 TCCCCCACCAAATACGTACAAT 59.423 45.455 0.00 0.00 0.00 2.71
475 476 2.685897 CCCCCACCAAATACGTACAATG 59.314 50.000 0.00 0.00 0.00 2.82
476 477 2.098443 CCCCACCAAATACGTACAATGC 59.902 50.000 0.00 0.00 0.00 3.56
477 478 3.013921 CCCACCAAATACGTACAATGCT 58.986 45.455 0.00 0.00 0.00 3.79
478 479 3.442273 CCCACCAAATACGTACAATGCTT 59.558 43.478 0.00 0.00 0.00 3.91
479 480 4.636648 CCCACCAAATACGTACAATGCTTA 59.363 41.667 0.00 0.00 0.00 3.09
480 481 5.298276 CCCACCAAATACGTACAATGCTTAT 59.702 40.000 0.00 0.00 0.00 1.73
481 482 6.183360 CCCACCAAATACGTACAATGCTTATT 60.183 38.462 0.00 0.00 0.00 1.40
482 483 6.690957 CCACCAAATACGTACAATGCTTATTG 59.309 38.462 0.00 0.00 37.54 1.90
483 484 6.690957 CACCAAATACGTACAATGCTTATTGG 59.309 38.462 0.00 4.73 35.93 3.16
484 485 6.376018 ACCAAATACGTACAATGCTTATTGGT 59.624 34.615 0.00 5.31 35.93 3.67
501 502 1.072505 GTGACCAACCCCGTGTCAT 59.927 57.895 0.00 0.00 40.75 3.06
513 514 2.755876 TGTCATCTCGCCTCGGCT 60.756 61.111 6.35 0.00 39.32 5.52
517 519 0.385751 TCATCTCGCCTCGGCTAAAG 59.614 55.000 6.35 1.42 39.32 1.85
518 520 0.385751 CATCTCGCCTCGGCTAAAGA 59.614 55.000 6.35 6.68 39.32 2.52
519 521 0.386113 ATCTCGCCTCGGCTAAAGAC 59.614 55.000 6.35 0.00 39.32 3.01
525 527 1.740718 GCCTCGGCTAAAGACTTGGAG 60.741 57.143 0.00 0.00 38.26 3.86
526 528 1.825474 CCTCGGCTAAAGACTTGGAGA 59.175 52.381 2.28 0.00 0.00 3.71
527 529 2.417515 CCTCGGCTAAAGACTTGGAGAC 60.418 54.545 2.28 0.00 0.00 3.36
528 530 2.231478 CTCGGCTAAAGACTTGGAGACA 59.769 50.000 4.53 0.00 39.83 3.41
548 550 5.716703 AGACAACCCCTCTCAATAAAAATGG 59.283 40.000 0.00 0.00 0.00 3.16
552 554 5.023452 ACCCCTCTCAATAAAAATGGGAAC 58.977 41.667 0.00 0.00 35.40 3.62
571 573 0.037590 CCTTTTCCCCATCGGACACA 59.962 55.000 0.00 0.00 41.83 3.72
586 588 7.201688 CCATCGGACACATACAATGTTTATTGA 60.202 37.037 6.98 0.00 45.21 2.57
590 592 7.465379 CGGACACATACAATGTTTATTGACGAT 60.465 37.037 6.98 0.00 45.21 3.73
594 596 9.720667 CACATACAATGTTTATTGACGATCAAT 57.279 29.630 14.65 14.65 44.49 2.57
601 603 0.179084 ATTGACGATCAATCCCGCGT 60.179 50.000 4.92 0.00 43.03 6.01
604 606 1.441729 ACGATCAATCCCGCGTCAT 59.558 52.632 4.92 0.00 30.15 3.06
606 608 0.319040 CGATCAATCCCGCGTCATCT 60.319 55.000 4.92 0.00 0.00 2.90
608 610 0.752658 ATCAATCCCGCGTCATCTCA 59.247 50.000 4.92 0.00 0.00 3.27
622 624 2.094675 CATCTCACCTCGGCCAAAAAT 58.905 47.619 2.24 0.00 0.00 1.82
626 628 3.756434 TCTCACCTCGGCCAAAAATTTAG 59.244 43.478 2.24 0.00 0.00 1.85
638 640 5.337250 GCCAAAAATTTAGGACGATCCCTTT 60.337 40.000 12.46 0.00 37.19 3.11
708 710 4.572571 GACCAACCCCACGCCACA 62.573 66.667 0.00 0.00 0.00 4.17
709 711 4.579384 ACCAACCCCACGCCACAG 62.579 66.667 0.00 0.00 0.00 3.66
711 713 4.579384 CAACCCCACGCCACAGGT 62.579 66.667 0.00 0.00 0.00 4.00
712 714 3.816090 AACCCCACGCCACAGGTT 61.816 61.111 0.00 0.00 37.78 3.50
717 719 3.041940 CACGCCACAGGTTCGGTC 61.042 66.667 0.00 0.00 0.00 4.79
718 720 3.542676 ACGCCACAGGTTCGGTCA 61.543 61.111 0.00 0.00 0.00 4.02
719 721 2.280524 CGCCACAGGTTCGGTCAA 60.281 61.111 0.00 0.00 0.00 3.18
734 747 2.075979 GTCAAGGGACGACCACTTAC 57.924 55.000 6.20 3.62 43.89 2.34
736 749 1.616865 TCAAGGGACGACCACTTACAG 59.383 52.381 6.20 0.00 43.89 2.74
737 750 1.616865 CAAGGGACGACCACTTACAGA 59.383 52.381 6.20 0.00 43.89 3.41
738 751 1.546961 AGGGACGACCACTTACAGAG 58.453 55.000 6.20 0.00 43.89 3.35
739 752 1.075050 AGGGACGACCACTTACAGAGA 59.925 52.381 6.20 0.00 43.89 3.10
751 764 3.579151 ACTTACAGAGAAGGAACCCTCAC 59.421 47.826 0.00 0.00 30.89 3.51
753 766 1.257743 CAGAGAAGGAACCCTCACGA 58.742 55.000 0.00 0.00 30.89 4.35
818 831 2.439883 GCCTCTCCCTCGTACGGT 60.440 66.667 16.52 0.00 0.00 4.83
819 832 2.479750 GCCTCTCCCTCGTACGGTC 61.480 68.421 16.52 0.00 0.00 4.79
820 833 2.178890 CCTCTCCCTCGTACGGTCG 61.179 68.421 16.52 4.34 0.00 4.79
821 834 2.124983 TCTCCCTCGTACGGTCGG 60.125 66.667 16.52 13.10 0.00 4.79
822 835 2.437359 CTCCCTCGTACGGTCGGT 60.437 66.667 16.52 0.00 0.00 4.69
823 836 2.436646 TCCCTCGTACGGTCGGTC 60.437 66.667 16.52 0.00 0.00 4.79
824 837 3.512516 CCCTCGTACGGTCGGTCC 61.513 72.222 16.52 0.00 0.00 4.46
825 838 2.437359 CCTCGTACGGTCGGTCCT 60.437 66.667 16.52 0.00 0.00 3.85
826 839 1.153369 CCTCGTACGGTCGGTCCTA 60.153 63.158 16.52 0.00 0.00 2.94
827 840 1.432270 CCTCGTACGGTCGGTCCTAC 61.432 65.000 16.52 0.00 0.00 3.18
979 992 3.907260 CTTTCCAGGCTGCAGCGGA 62.907 63.158 31.19 28.34 43.26 5.54
1237 1250 5.291293 TCTTTTGCTTTGCTTACGGATAC 57.709 39.130 0.00 0.00 0.00 2.24
1258 1271 0.538746 GATGTTTCCGTGTTGGGGGT 60.539 55.000 0.00 0.00 38.76 4.95
1259 1272 0.105913 ATGTTTCCGTGTTGGGGGTT 60.106 50.000 0.00 0.00 38.76 4.11
1275 1288 3.169908 GGGGTTGGTGATTTGGTGTATT 58.830 45.455 0.00 0.00 0.00 1.89
1284 1297 5.163519 GGTGATTTGGTGTATTCATTCTGGG 60.164 44.000 0.00 0.00 0.00 4.45
1293 1306 5.418840 GTGTATTCATTCTGGGATTGGTTGT 59.581 40.000 0.00 0.00 0.00 3.32
1295 1308 3.524095 TCATTCTGGGATTGGTTGTGT 57.476 42.857 0.00 0.00 0.00 3.72
1373 1413 1.878088 AGTAGTCTGTCGTTGCTTCGA 59.122 47.619 0.23 0.23 37.51 3.71
1403 1443 9.508567 GAAGTTAATGATTGAGTTATTCCAAGC 57.491 33.333 0.00 0.00 0.00 4.01
1405 1445 8.897752 AGTTAATGATTGAGTTATTCCAAGCTC 58.102 33.333 0.00 0.00 30.79 4.09
1447 1487 7.925993 AGTTTGACTCGAGATCTCAATAGTAG 58.074 38.462 21.68 10.96 0.00 2.57
1490 1531 3.806949 TGTCCCTTCTGCTTAAACCAT 57.193 42.857 0.00 0.00 0.00 3.55
1507 1548 2.158813 ACCATCAACTTCTTGTCGGTGT 60.159 45.455 0.00 0.00 34.02 4.16
1586 1628 7.877003 TGTGTTTGTTCTTTTCTGTCTTGTTA 58.123 30.769 0.00 0.00 0.00 2.41
1587 1629 8.519526 TGTGTTTGTTCTTTTCTGTCTTGTTAT 58.480 29.630 0.00 0.00 0.00 1.89
1588 1630 9.353999 GTGTTTGTTCTTTTCTGTCTTGTTATT 57.646 29.630 0.00 0.00 0.00 1.40
1717 1759 8.463930 TCAAGTCATACTGAAAGACCAAAAAT 57.536 30.769 0.00 0.00 37.43 1.82
1750 1792 0.995024 ACTTTGACTAGGGCATGCCT 59.005 50.000 34.70 22.68 36.10 4.75
1751 1793 1.340405 ACTTTGACTAGGGCATGCCTG 60.340 52.381 34.70 25.43 36.10 4.85
1752 1794 0.698238 TTTGACTAGGGCATGCCTGT 59.302 50.000 34.70 28.15 36.10 4.00
1753 1795 1.578897 TTGACTAGGGCATGCCTGTA 58.421 50.000 34.70 24.11 36.10 2.74
1754 1796 1.578897 TGACTAGGGCATGCCTGTAA 58.421 50.000 34.70 20.87 36.10 2.41
1755 1797 2.126882 TGACTAGGGCATGCCTGTAAT 58.873 47.619 34.70 17.50 36.10 1.89
1756 1798 3.313791 TGACTAGGGCATGCCTGTAATA 58.686 45.455 34.70 18.26 36.10 0.98
1757 1799 3.909995 TGACTAGGGCATGCCTGTAATAT 59.090 43.478 34.70 14.89 36.10 1.28
1758 1800 4.020218 TGACTAGGGCATGCCTGTAATATC 60.020 45.833 34.70 21.80 36.10 1.63
1759 1801 4.171234 ACTAGGGCATGCCTGTAATATCT 58.829 43.478 34.70 22.31 36.10 1.98
1760 1802 4.599241 ACTAGGGCATGCCTGTAATATCTT 59.401 41.667 34.70 5.69 36.10 2.40
1761 1803 5.785423 ACTAGGGCATGCCTGTAATATCTTA 59.215 40.000 34.70 6.58 36.10 2.10
1762 1804 5.171339 AGGGCATGCCTGTAATATCTTAG 57.829 43.478 34.70 0.00 36.10 2.18
1763 1805 4.599241 AGGGCATGCCTGTAATATCTTAGT 59.401 41.667 34.70 0.00 36.10 2.24
1764 1806 4.697352 GGGCATGCCTGTAATATCTTAGTG 59.303 45.833 34.70 0.00 36.10 2.74
1765 1807 4.697352 GGCATGCCTGTAATATCTTAGTGG 59.303 45.833 29.98 0.00 0.00 4.00
1766 1808 4.154918 GCATGCCTGTAATATCTTAGTGGC 59.845 45.833 6.36 0.00 37.13 5.01
1767 1809 5.555017 CATGCCTGTAATATCTTAGTGGCT 58.445 41.667 12.25 0.00 37.33 4.75
1768 1810 6.701340 CATGCCTGTAATATCTTAGTGGCTA 58.299 40.000 12.25 3.85 37.33 3.93
1769 1811 6.740944 TGCCTGTAATATCTTAGTGGCTAA 57.259 37.500 12.25 0.00 37.33 3.09
1770 1812 6.759272 TGCCTGTAATATCTTAGTGGCTAAG 58.241 40.000 9.05 9.05 43.23 2.18
1771 1813 6.166982 GCCTGTAATATCTTAGTGGCTAAGG 58.833 44.000 13.83 0.00 42.43 2.69
1772 1814 6.239629 GCCTGTAATATCTTAGTGGCTAAGGT 60.240 42.308 13.83 10.46 42.43 3.50
1773 1815 7.689559 GCCTGTAATATCTTAGTGGCTAAGGTT 60.690 40.741 13.83 9.93 42.43 3.50
1774 1816 7.873505 CCTGTAATATCTTAGTGGCTAAGGTTC 59.126 40.741 13.83 2.95 42.43 3.62
1775 1817 8.313944 TGTAATATCTTAGTGGCTAAGGTTCA 57.686 34.615 13.83 4.85 42.43 3.18
1776 1818 8.202137 TGTAATATCTTAGTGGCTAAGGTTCAC 58.798 37.037 13.83 7.75 42.43 3.18
1777 1819 3.975168 TCTTAGTGGCTAAGGTTCACC 57.025 47.619 13.83 0.00 42.43 4.02
1797 1839 5.568620 ACCTAATTGTGGTGAGACTTTCT 57.431 39.130 4.45 0.00 36.30 2.52
1798 1840 5.308825 ACCTAATTGTGGTGAGACTTTCTG 58.691 41.667 4.45 0.00 36.30 3.02
1799 1841 4.154918 CCTAATTGTGGTGAGACTTTCTGC 59.845 45.833 0.00 0.00 0.00 4.26
1800 1842 2.708216 TTGTGGTGAGACTTTCTGCA 57.292 45.000 0.00 0.00 0.00 4.41
1801 1843 2.708216 TGTGGTGAGACTTTCTGCAA 57.292 45.000 0.00 0.00 0.00 4.08
1802 1844 3.213206 TGTGGTGAGACTTTCTGCAAT 57.787 42.857 0.00 0.00 0.00 3.56
1803 1845 3.141398 TGTGGTGAGACTTTCTGCAATC 58.859 45.455 0.00 0.00 0.00 2.67
1804 1846 2.158449 GTGGTGAGACTTTCTGCAATCG 59.842 50.000 0.00 0.00 0.00 3.34
1805 1847 2.224281 TGGTGAGACTTTCTGCAATCGT 60.224 45.455 0.00 0.00 0.00 3.73
1806 1848 3.006430 TGGTGAGACTTTCTGCAATCGTA 59.994 43.478 0.00 0.00 0.00 3.43
1807 1849 4.184629 GGTGAGACTTTCTGCAATCGTAT 58.815 43.478 0.00 0.00 0.00 3.06
1808 1850 4.033358 GGTGAGACTTTCTGCAATCGTATG 59.967 45.833 0.00 0.00 0.00 2.39
1809 1851 4.627467 GTGAGACTTTCTGCAATCGTATGT 59.373 41.667 0.00 0.00 0.00 2.29
1810 1852 4.627035 TGAGACTTTCTGCAATCGTATGTG 59.373 41.667 0.00 0.00 0.00 3.21
1811 1853 3.372206 AGACTTTCTGCAATCGTATGTGC 59.628 43.478 0.00 0.00 41.29 4.57
1817 1859 1.538276 GCAATCGTATGTGCAAGTGC 58.462 50.000 0.00 0.00 40.58 4.40
1827 1869 4.641777 GCAAGTGCAACCTTGAGC 57.358 55.556 18.46 3.07 43.65 4.26
1828 1870 1.735360 GCAAGTGCAACCTTGAGCA 59.265 52.632 18.46 0.00 43.65 4.26
1829 1871 0.318445 GCAAGTGCAACCTTGAGCAG 60.318 55.000 18.46 0.00 43.65 4.24
1830 1872 1.311859 CAAGTGCAACCTTGAGCAGA 58.688 50.000 10.74 0.00 43.65 4.26
1831 1873 1.266175 CAAGTGCAACCTTGAGCAGAG 59.734 52.381 10.74 0.00 43.65 3.35
1832 1874 0.888285 AGTGCAACCTTGAGCAGAGC 60.888 55.000 0.00 0.00 42.14 4.09
1833 1875 1.148949 TGCAACCTTGAGCAGAGCA 59.851 52.632 0.00 0.00 35.51 4.26
1834 1876 0.251033 TGCAACCTTGAGCAGAGCAT 60.251 50.000 0.00 0.00 35.51 3.79
1835 1877 0.886563 GCAACCTTGAGCAGAGCATT 59.113 50.000 0.00 0.00 0.00 3.56
1836 1878 1.402456 GCAACCTTGAGCAGAGCATTG 60.402 52.381 0.00 0.00 0.00 2.82
1837 1879 2.156917 CAACCTTGAGCAGAGCATTGA 58.843 47.619 0.00 0.00 0.00 2.57
1838 1880 2.555325 CAACCTTGAGCAGAGCATTGAA 59.445 45.455 0.00 0.00 0.00 2.69
1839 1881 3.083122 ACCTTGAGCAGAGCATTGAAT 57.917 42.857 0.00 0.00 0.00 2.57
1840 1882 3.428532 ACCTTGAGCAGAGCATTGAATT 58.571 40.909 0.00 0.00 0.00 2.17
1841 1883 4.592942 ACCTTGAGCAGAGCATTGAATTA 58.407 39.130 0.00 0.00 0.00 1.40
1842 1884 5.198965 ACCTTGAGCAGAGCATTGAATTAT 58.801 37.500 0.00 0.00 0.00 1.28
1843 1885 6.359804 ACCTTGAGCAGAGCATTGAATTATA 58.640 36.000 0.00 0.00 0.00 0.98
1844 1886 6.485984 ACCTTGAGCAGAGCATTGAATTATAG 59.514 38.462 0.00 0.00 0.00 1.31
1845 1887 5.936686 TGAGCAGAGCATTGAATTATAGC 57.063 39.130 0.00 0.00 0.00 2.97
1846 1888 5.370679 TGAGCAGAGCATTGAATTATAGCA 58.629 37.500 0.00 0.00 0.00 3.49
1847 1889 5.237996 TGAGCAGAGCATTGAATTATAGCAC 59.762 40.000 0.00 0.00 0.00 4.40
1848 1890 5.374921 AGCAGAGCATTGAATTATAGCACT 58.625 37.500 0.00 0.00 0.00 4.40
1849 1891 6.528321 AGCAGAGCATTGAATTATAGCACTA 58.472 36.000 0.00 0.00 0.00 2.74
1850 1892 7.166851 AGCAGAGCATTGAATTATAGCACTAT 58.833 34.615 0.00 0.00 0.00 2.12
1851 1893 7.119407 AGCAGAGCATTGAATTATAGCACTATG 59.881 37.037 0.30 0.00 0.00 2.23
1852 1894 7.118825 GCAGAGCATTGAATTATAGCACTATGA 59.881 37.037 0.30 0.00 0.00 2.15
1853 1895 8.996271 CAGAGCATTGAATTATAGCACTATGAA 58.004 33.333 0.30 0.00 0.00 2.57
1854 1896 9.736414 AGAGCATTGAATTATAGCACTATGAAT 57.264 29.630 0.30 0.00 0.00 2.57
1855 1897 9.770503 GAGCATTGAATTATAGCACTATGAATG 57.229 33.333 0.30 0.00 0.00 2.67
1856 1898 8.737175 AGCATTGAATTATAGCACTATGAATGG 58.263 33.333 0.30 0.00 0.00 3.16
1857 1899 8.733458 GCATTGAATTATAGCACTATGAATGGA 58.267 33.333 0.30 0.00 0.00 3.41
1865 1907 9.725019 TTATAGCACTATGAATGGATTAACCTG 57.275 33.333 0.30 0.00 39.86 4.00
1866 1908 5.380043 AGCACTATGAATGGATTAACCTGG 58.620 41.667 0.00 0.00 39.86 4.45
1867 1909 5.103940 AGCACTATGAATGGATTAACCTGGT 60.104 40.000 0.00 0.00 39.86 4.00
1868 1910 5.594317 GCACTATGAATGGATTAACCTGGTT 59.406 40.000 17.44 17.44 39.86 3.67
1869 1911 6.238759 GCACTATGAATGGATTAACCTGGTTC 60.239 42.308 16.75 1.40 39.86 3.62
1870 1912 7.056635 CACTATGAATGGATTAACCTGGTTCT 58.943 38.462 16.75 4.72 39.86 3.01
1871 1913 7.012704 CACTATGAATGGATTAACCTGGTTCTG 59.987 40.741 16.75 0.00 39.86 3.02
1872 1914 5.512942 TGAATGGATTAACCTGGTTCTGA 57.487 39.130 16.75 4.01 39.86 3.27
1873 1915 6.078456 TGAATGGATTAACCTGGTTCTGAT 57.922 37.500 16.75 8.88 39.86 2.90
1874 1916 7.206789 TGAATGGATTAACCTGGTTCTGATA 57.793 36.000 16.75 1.84 39.86 2.15
1875 1917 7.638444 TGAATGGATTAACCTGGTTCTGATAA 58.362 34.615 16.75 4.69 39.86 1.75
1876 1918 7.556275 TGAATGGATTAACCTGGTTCTGATAAC 59.444 37.037 16.75 6.55 39.86 1.89
1877 1919 6.636454 TGGATTAACCTGGTTCTGATAACT 57.364 37.500 16.75 0.00 39.86 2.24
1878 1920 7.027874 TGGATTAACCTGGTTCTGATAACTT 57.972 36.000 16.75 0.00 39.86 2.66
1879 1921 7.466804 TGGATTAACCTGGTTCTGATAACTTT 58.533 34.615 16.75 0.00 39.86 2.66
1880 1922 7.393234 TGGATTAACCTGGTTCTGATAACTTTG 59.607 37.037 16.75 0.00 39.86 2.77
1881 1923 7.610305 GGATTAACCTGGTTCTGATAACTTTGA 59.390 37.037 16.75 0.00 35.41 2.69
1882 1924 7.739498 TTAACCTGGTTCTGATAACTTTGAC 57.261 36.000 16.75 0.00 0.00 3.18
1883 1925 5.568620 ACCTGGTTCTGATAACTTTGACT 57.431 39.130 0.00 0.00 0.00 3.41
1884 1926 5.941788 ACCTGGTTCTGATAACTTTGACTT 58.058 37.500 0.00 0.00 0.00 3.01
1885 1927 7.074653 ACCTGGTTCTGATAACTTTGACTTA 57.925 36.000 0.00 0.00 0.00 2.24
1886 1928 7.690256 ACCTGGTTCTGATAACTTTGACTTAT 58.310 34.615 0.00 0.00 0.00 1.73
1887 1929 8.822805 ACCTGGTTCTGATAACTTTGACTTATA 58.177 33.333 0.00 0.00 0.00 0.98
1888 1930 9.319143 CCTGGTTCTGATAACTTTGACTTATAG 57.681 37.037 0.00 0.00 0.00 1.31
1889 1931 9.877178 CTGGTTCTGATAACTTTGACTTATAGT 57.123 33.333 0.00 0.00 0.00 2.12
1905 1947 9.609346 TGACTTATAGTTTTGATAACTAAGGCC 57.391 33.333 0.00 0.00 36.45 5.19
1906 1948 9.833917 GACTTATAGTTTTGATAACTAAGGCCT 57.166 33.333 0.00 0.00 36.45 5.19
1963 2005 4.621068 TGTTGTGAGACTTTCTGCAAAG 57.379 40.909 0.00 0.00 44.24 2.77
1966 2008 4.415881 TGTGAGACTTTCTGCAAAGGTA 57.584 40.909 3.31 0.00 43.12 3.08
2016 2058 9.511272 AGCATTGAATTATAGCACTATGAATGA 57.489 29.630 0.30 0.00 0.00 2.57
2031 2073 9.613428 CACTATGAATGAATTAACCTGGTTCTA 57.387 33.333 16.75 6.05 0.00 2.10
2193 2235 5.500234 TGAATGGATTAACCTGGTTCTGAG 58.500 41.667 16.75 0.00 39.86 3.35
2348 2396 2.103263 GACCTTGGACAGTGTCAGAACT 59.897 50.000 24.20 3.80 33.68 3.01
2411 2459 5.939764 TGGAGAGAGCACAGTATTGTTAT 57.060 39.130 0.00 0.00 34.62 1.89
2685 2733 3.055021 TCCAGTATCCAACGGTAATGCAA 60.055 43.478 0.00 0.00 0.00 4.08
2698 2746 7.172654 ACGGTAATGCAAATTTCAAGTTTTC 57.827 32.000 0.00 0.00 0.00 2.29
2713 2761 4.058721 AGTTTTCTTGGGTGTCAAATGC 57.941 40.909 0.00 0.00 34.56 3.56
2714 2762 3.706086 AGTTTTCTTGGGTGTCAAATGCT 59.294 39.130 0.00 0.00 34.56 3.79
2715 2763 4.162131 AGTTTTCTTGGGTGTCAAATGCTT 59.838 37.500 0.00 0.00 34.56 3.91
2767 2816 3.433306 TGTAGGAAAACATGGTCCTGG 57.567 47.619 19.72 0.00 44.25 4.45
2826 2875 4.793216 GTGCATGAACGATTGAACAATACC 59.207 41.667 0.00 0.00 0.00 2.73
2923 2972 1.699083 TGGAGCCTGAAACATCTGTCA 59.301 47.619 0.00 0.00 0.00 3.58
2986 3035 8.737175 TCGTATTTCTAGTAGATCACTGTGTTT 58.263 33.333 7.79 0.00 38.24 2.83
3220 3269 3.338249 TCAATACTGCTGGTCTTTGAGC 58.662 45.455 0.00 0.00 35.65 4.26
3238 3287 0.179163 GCCGGACAGCTAATTGTTGC 60.179 55.000 5.05 0.00 0.00 4.17
3259 3308 7.823310 TGTTGCAAATCATTTTTACTATGCCAT 59.177 29.630 0.00 0.00 0.00 4.40
3263 3312 9.311916 GCAAATCATTTTTACTATGCCATAACA 57.688 29.630 0.00 0.00 0.00 2.41
3289 3338 7.288810 TCATTCACTGAAAATAAGCCTTGTT 57.711 32.000 0.00 0.00 0.00 2.83
3397 3447 4.022068 TCCTGCAACTAAGCATTTCTTTGG 60.022 41.667 0.00 0.00 44.68 3.28
3855 3908 1.725665 CAACAGGATCATGCCGCTG 59.274 57.895 7.40 0.00 0.00 5.18
3871 3924 1.816863 GCTGACCAAGGACGTCCAGA 61.817 60.000 35.00 11.34 38.89 3.86
3906 3959 4.079850 AGGCTGGACTGAGCGCTG 62.080 66.667 18.48 3.12 40.13 5.18
3919 3972 2.084681 GCGCTGACAAATGTGCAGC 61.085 57.895 17.43 17.43 44.54 5.25
3949 4003 3.881688 CTGCTCCATCATCCGATTTTCTT 59.118 43.478 0.00 0.00 0.00 2.52
3977 4031 1.476488 CAAAGAATAAACGGGGCAGGG 59.524 52.381 0.00 0.00 0.00 4.45
4017 4071 9.775854 ATATTCATATTGAGACTCAACTTGGAG 57.224 33.333 19.96 7.60 39.45 3.86
4046 4100 9.607285 ACATATTTGAGACGTTTATTGTTTCAC 57.393 29.630 0.00 0.00 31.09 3.18
4090 4144 2.743718 CAAGAGGAGCCACCGTGT 59.256 61.111 0.00 0.00 44.74 4.49
4106 4160 2.594592 GTGGTGGGACTGTGGCAC 60.595 66.667 11.55 11.55 0.00 5.01
4164 4218 5.128499 AGCTTTGAATCTTAGAGCAGCTCTA 59.872 40.000 25.81 25.81 41.50 2.43
4250 4304 2.209273 GTTGGCGGCAAAATCAGTTTT 58.791 42.857 27.23 0.00 38.03 2.43
4300 4356 7.745022 AATCAAATTCAGCATAACATGTTCG 57.255 32.000 15.85 8.94 0.00 3.95
4403 4459 4.255301 ACGGAGTGTTTGTGACTTGTTAA 58.745 39.130 0.00 0.00 42.51 2.01
4553 4769 4.767409 AGTATGCGCTCAGTTCTCCATATA 59.233 41.667 9.73 0.00 0.00 0.86
4567 4783 8.812972 AGTTCTCCATATAAGCGGTTATTATCA 58.187 33.333 23.54 7.53 31.04 2.15
4637 4853 9.098355 GAATTTTGGGGAATATGCTAGTTTTTC 57.902 33.333 0.00 0.00 0.00 2.29
4696 4912 4.920112 CGCCCACACACGGAACCA 62.920 66.667 0.00 0.00 0.00 3.67
4713 4929 1.850345 ACCAACCAGAAAGACCAAGGA 59.150 47.619 0.00 0.00 0.00 3.36
4754 4970 0.667993 TTGCGCAAAACCTCTCCAAG 59.332 50.000 22.78 0.00 0.00 3.61
4809 5025 1.026182 GCAACTGCCATCATCACCGA 61.026 55.000 0.00 0.00 34.31 4.69
4815 5031 1.488393 TGCCATCATCACCGATAACCA 59.512 47.619 0.00 0.00 0.00 3.67
4818 5034 3.806858 GCCATCATCACCGATAACCATCA 60.807 47.826 0.00 0.00 0.00 3.07
4844 5060 3.713826 TTCGAAGGAAAACCATAGCCT 57.286 42.857 0.00 0.00 0.00 4.58
4884 5100 1.080434 GAAGAAGCCTGTCGAGCGT 60.080 57.895 0.00 0.00 34.64 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.864334 GCCTCCACATCCGCCCAG 62.864 72.222 0.00 0.00 0.00 4.45
18 19 4.400961 ACTCTTCCAGCTGCCGCC 62.401 66.667 8.66 0.00 36.60 6.13
19 20 2.817396 GACTCTTCCAGCTGCCGC 60.817 66.667 8.66 0.00 0.00 6.53
20 21 2.507992 CGACTCTTCCAGCTGCCG 60.508 66.667 8.66 0.00 0.00 5.69
21 22 2.817396 GCGACTCTTCCAGCTGCC 60.817 66.667 8.66 0.00 0.00 4.85
22 23 2.817396 GGCGACTCTTCCAGCTGC 60.817 66.667 8.66 0.00 0.00 5.25
23 24 2.507992 CGGCGACTCTTCCAGCTG 60.508 66.667 6.78 6.78 0.00 4.24
24 25 3.764466 CCGGCGACTCTTCCAGCT 61.764 66.667 9.30 0.00 0.00 4.24
26 27 3.589654 TTGCCGGCGACTCTTCCAG 62.590 63.158 23.90 0.00 0.00 3.86
27 28 2.668185 TTTTGCCGGCGACTCTTCCA 62.668 55.000 23.90 0.00 0.00 3.53
28 29 1.305930 ATTTTGCCGGCGACTCTTCC 61.306 55.000 23.90 0.00 0.00 3.46
29 30 0.179189 CATTTTGCCGGCGACTCTTC 60.179 55.000 23.90 0.00 0.00 2.87
30 31 1.586154 CCATTTTGCCGGCGACTCTT 61.586 55.000 23.90 0.67 0.00 2.85
31 32 2.040544 CCATTTTGCCGGCGACTCT 61.041 57.895 23.90 3.76 0.00 3.24
32 33 2.485122 CCATTTTGCCGGCGACTC 59.515 61.111 23.90 0.00 0.00 3.36
33 34 3.061848 CCCATTTTGCCGGCGACT 61.062 61.111 23.90 7.07 0.00 4.18
34 35 4.794439 GCCCATTTTGCCGGCGAC 62.794 66.667 23.90 2.46 31.92 5.19
58 59 2.126031 GGCTCCTTCGTCACCGAC 60.126 66.667 0.00 0.00 44.13 4.79
59 60 3.744719 CGGCTCCTTCGTCACCGA 61.745 66.667 0.00 0.00 46.71 4.69
60 61 4.796231 CCGGCTCCTTCGTCACCG 62.796 72.222 0.00 0.00 43.44 4.94
61 62 4.452733 CCCGGCTCCTTCGTCACC 62.453 72.222 0.00 0.00 0.00 4.02
62 63 4.452733 CCCCGGCTCCTTCGTCAC 62.453 72.222 0.00 0.00 0.00 3.67
77 78 4.660938 ACAAGCAACCCTCGCCCC 62.661 66.667 0.00 0.00 0.00 5.80
78 79 2.597510 AACAAGCAACCCTCGCCC 60.598 61.111 0.00 0.00 0.00 6.13
79 80 2.644992 CAACAAGCAACCCTCGCC 59.355 61.111 0.00 0.00 0.00 5.54
80 81 2.644992 CCAACAAGCAACCCTCGC 59.355 61.111 0.00 0.00 0.00 5.03
81 82 1.898574 AGCCAACAAGCAACCCTCG 60.899 57.895 0.00 0.00 34.23 4.63
82 83 1.662044 CAGCCAACAAGCAACCCTC 59.338 57.895 0.00 0.00 34.23 4.30
83 84 1.833934 CCAGCCAACAAGCAACCCT 60.834 57.895 0.00 0.00 34.23 4.34
84 85 2.736531 CCAGCCAACAAGCAACCC 59.263 61.111 0.00 0.00 34.23 4.11
85 86 2.736531 CCCAGCCAACAAGCAACC 59.263 61.111 0.00 0.00 34.23 3.77
86 87 2.736531 CCCCAGCCAACAAGCAAC 59.263 61.111 0.00 0.00 34.23 4.17
87 88 2.523902 CCCCCAGCCAACAAGCAA 60.524 61.111 0.00 0.00 34.23 3.91
88 89 3.506743 TCCCCCAGCCAACAAGCA 61.507 61.111 0.00 0.00 34.23 3.91
89 90 2.677875 CTCCCCCAGCCAACAAGC 60.678 66.667 0.00 0.00 0.00 4.01
90 91 2.036256 CCTCCCCCAGCCAACAAG 59.964 66.667 0.00 0.00 0.00 3.16
91 92 3.589542 CCCTCCCCCAGCCAACAA 61.590 66.667 0.00 0.00 0.00 2.83
92 93 4.608514 TCCCTCCCCCAGCCAACA 62.609 66.667 0.00 0.00 0.00 3.33
93 94 3.264845 TTCCCTCCCCCAGCCAAC 61.265 66.667 0.00 0.00 0.00 3.77
94 95 2.941025 CTTCCCTCCCCCAGCCAA 60.941 66.667 0.00 0.00 0.00 4.52
98 99 0.699231 ATTAGCCTTCCCTCCCCCAG 60.699 60.000 0.00 0.00 0.00 4.45
99 100 0.993509 CATTAGCCTTCCCTCCCCCA 60.994 60.000 0.00 0.00 0.00 4.96
100 101 0.994050 ACATTAGCCTTCCCTCCCCC 60.994 60.000 0.00 0.00 0.00 5.40
101 102 0.183731 CACATTAGCCTTCCCTCCCC 59.816 60.000 0.00 0.00 0.00 4.81
102 103 0.466372 GCACATTAGCCTTCCCTCCC 60.466 60.000 0.00 0.00 0.00 4.30
103 104 3.102090 GCACATTAGCCTTCCCTCC 57.898 57.895 0.00 0.00 0.00 4.30
112 113 1.729149 GCTCGTTTGTGGCACATTAGC 60.729 52.381 22.73 21.36 44.52 3.09
113 114 1.464023 CGCTCGTTTGTGGCACATTAG 60.464 52.381 22.73 16.19 44.52 1.73
114 115 0.515127 CGCTCGTTTGTGGCACATTA 59.485 50.000 22.73 10.04 44.52 1.90
115 116 1.282570 CGCTCGTTTGTGGCACATT 59.717 52.632 22.73 0.00 44.52 2.71
116 117 2.616330 CCGCTCGTTTGTGGCACAT 61.616 57.895 22.73 0.00 44.52 3.21
117 118 3.276091 CCGCTCGTTTGTGGCACA 61.276 61.111 17.96 17.96 0.00 4.57
118 119 4.025401 CCCGCTCGTTTGTGGCAC 62.025 66.667 11.55 11.55 36.35 5.01
133 134 3.170146 TACTCCTATCCCCGGGCCC 62.170 68.421 17.73 13.57 0.00 5.80
134 135 1.609794 CTACTCCTATCCCCGGGCC 60.610 68.421 17.73 0.00 0.00 5.80
135 136 1.609794 CCTACTCCTATCCCCGGGC 60.610 68.421 17.73 0.00 0.00 6.13
136 137 1.609794 GCCTACTCCTATCCCCGGG 60.610 68.421 15.80 15.80 0.00 5.73
137 138 1.977544 CGCCTACTCCTATCCCCGG 60.978 68.421 0.00 0.00 0.00 5.73
138 139 0.961358 CTCGCCTACTCCTATCCCCG 60.961 65.000 0.00 0.00 0.00 5.73
139 140 1.252215 GCTCGCCTACTCCTATCCCC 61.252 65.000 0.00 0.00 0.00 4.81
140 141 0.539901 TGCTCGCCTACTCCTATCCC 60.540 60.000 0.00 0.00 0.00 3.85
141 142 1.271102 CTTGCTCGCCTACTCCTATCC 59.729 57.143 0.00 0.00 0.00 2.59
142 143 1.336424 GCTTGCTCGCCTACTCCTATC 60.336 57.143 0.00 0.00 0.00 2.08
143 144 0.676736 GCTTGCTCGCCTACTCCTAT 59.323 55.000 0.00 0.00 0.00 2.57
144 145 1.725557 CGCTTGCTCGCCTACTCCTA 61.726 60.000 0.00 0.00 0.00 2.94
145 146 2.896443 GCTTGCTCGCCTACTCCT 59.104 61.111 0.00 0.00 0.00 3.69
146 147 2.583593 CGCTTGCTCGCCTACTCC 60.584 66.667 0.00 0.00 0.00 3.85
183 184 0.800683 TAGCCTGATTTGCGTCGACG 60.801 55.000 32.57 32.57 43.27 5.12
184 185 1.355971 TTAGCCTGATTTGCGTCGAC 58.644 50.000 5.18 5.18 0.00 4.20
185 186 2.087501 TTTAGCCTGATTTGCGTCGA 57.912 45.000 0.00 0.00 0.00 4.20
186 187 2.892373 TTTTAGCCTGATTTGCGTCG 57.108 45.000 0.00 0.00 0.00 5.12
203 204 1.271127 CCCATTCCCGGCCCATTTTT 61.271 55.000 0.00 0.00 0.00 1.94
204 205 1.688884 CCCATTCCCGGCCCATTTT 60.689 57.895 0.00 0.00 0.00 1.82
205 206 2.042025 CCCATTCCCGGCCCATTT 60.042 61.111 0.00 0.00 0.00 2.32
206 207 3.355344 ACCCATTCCCGGCCCATT 61.355 61.111 0.00 0.00 0.00 3.16
207 208 3.820843 GACCCATTCCCGGCCCAT 61.821 66.667 0.00 0.00 0.00 4.00
224 225 4.729798 GTTTTTCGTCCGCGGGCG 62.730 66.667 44.15 44.15 38.89 6.13
225 226 4.729798 CGTTTTTCGTCCGCGGGC 62.730 66.667 27.83 25.32 38.89 6.13
226 227 4.079748 CCGTTTTTCGTCCGCGGG 62.080 66.667 27.83 10.69 38.86 6.13
227 228 3.037249 TCCGTTTTTCGTCCGCGG 61.037 61.111 22.12 22.12 43.32 6.46
228 229 2.169327 GTCCGTTTTTCGTCCGCG 59.831 61.111 0.00 0.00 37.94 6.46
229 230 2.169327 CGTCCGTTTTTCGTCCGC 59.831 61.111 0.00 0.00 37.94 5.54
230 231 2.169327 GCGTCCGTTTTTCGTCCG 59.831 61.111 0.00 0.00 37.94 4.79
231 232 2.169327 CGCGTCCGTTTTTCGTCC 59.831 61.111 0.00 0.00 37.94 4.79
232 233 2.496171 GCGCGTCCGTTTTTCGTC 60.496 61.111 8.43 0.00 37.94 4.20
233 234 4.344109 CGCGCGTCCGTTTTTCGT 62.344 61.111 24.19 0.00 37.94 3.85
234 235 4.344109 ACGCGCGTCCGTTTTTCG 62.344 61.111 32.73 0.00 38.47 3.46
235 236 2.496171 GACGCGCGTCCGTTTTTC 60.496 61.111 44.30 23.38 42.24 2.29
246 247 3.484547 CTACCCAAACGGACGCGC 61.485 66.667 5.73 0.00 34.64 6.86
247 248 2.812178 CCTACCCAAACGGACGCG 60.812 66.667 3.53 3.53 34.64 6.01
248 249 3.122971 GCCTACCCAAACGGACGC 61.123 66.667 0.00 0.00 34.64 5.19
249 250 2.812178 CGCCTACCCAAACGGACG 60.812 66.667 0.00 0.00 34.64 4.79
250 251 3.122971 GCGCCTACCCAAACGGAC 61.123 66.667 0.00 0.00 34.64 4.79
251 252 4.745751 CGCGCCTACCCAAACGGA 62.746 66.667 0.00 0.00 34.64 4.69
253 254 3.045492 AACGCGCCTACCCAAACG 61.045 61.111 5.73 0.00 0.00 3.60
254 255 2.559330 CAACGCGCCTACCCAAAC 59.441 61.111 5.73 0.00 0.00 2.93
255 256 2.670251 CCAACGCGCCTACCCAAA 60.670 61.111 5.73 0.00 0.00 3.28
256 257 4.708386 CCCAACGCGCCTACCCAA 62.708 66.667 5.73 0.00 0.00 4.12
265 266 2.120355 AAAAGTAACGGCCCAACGCG 62.120 55.000 3.53 3.53 38.94 6.01
266 267 0.662077 CAAAAGTAACGGCCCAACGC 60.662 55.000 0.00 0.00 37.37 4.84
267 268 0.664224 ACAAAAGTAACGGCCCAACG 59.336 50.000 0.00 0.00 40.31 4.10
268 269 1.001048 GGACAAAAGTAACGGCCCAAC 60.001 52.381 0.00 0.00 0.00 3.77
269 270 1.320507 GGACAAAAGTAACGGCCCAA 58.679 50.000 0.00 0.00 0.00 4.12
270 271 0.885596 CGGACAAAAGTAACGGCCCA 60.886 55.000 0.00 0.00 0.00 5.36
271 272 1.871077 CGGACAAAAGTAACGGCCC 59.129 57.895 0.00 0.00 0.00 5.80
272 273 1.208358 GCGGACAAAAGTAACGGCC 59.792 57.895 0.00 0.00 0.00 6.13
273 274 0.385098 GTGCGGACAAAAGTAACGGC 60.385 55.000 0.63 0.00 0.00 5.68
274 275 0.236449 GGTGCGGACAAAAGTAACGG 59.764 55.000 9.96 0.00 0.00 4.44
275 276 0.111001 CGGTGCGGACAAAAGTAACG 60.111 55.000 9.96 0.00 0.00 3.18
276 277 1.070376 GTCGGTGCGGACAAAAGTAAC 60.070 52.381 9.96 0.00 36.91 2.50
277 278 1.219646 GTCGGTGCGGACAAAAGTAA 58.780 50.000 9.96 0.00 36.91 2.24
278 279 0.600782 GGTCGGTGCGGACAAAAGTA 60.601 55.000 9.96 0.00 38.70 2.24
279 280 1.890510 GGTCGGTGCGGACAAAAGT 60.891 57.895 9.96 0.00 38.70 2.66
280 281 2.613506 GGGTCGGTGCGGACAAAAG 61.614 63.158 9.96 0.00 38.70 2.27
281 282 2.592287 GGGTCGGTGCGGACAAAA 60.592 61.111 9.96 0.00 38.70 2.44
282 283 2.888464 TTTGGGTCGGTGCGGACAAA 62.888 55.000 9.96 0.00 38.70 2.83
283 284 2.684192 ATTTGGGTCGGTGCGGACAA 62.684 55.000 9.96 0.00 38.70 3.18
284 285 3.185299 ATTTGGGTCGGTGCGGACA 62.185 57.895 9.96 0.00 38.70 4.02
285 286 2.359478 ATTTGGGTCGGTGCGGAC 60.359 61.111 0.00 0.00 36.18 4.79
286 287 2.359354 CATTTGGGTCGGTGCGGA 60.359 61.111 0.00 0.00 0.00 5.54
287 288 3.439540 CCATTTGGGTCGGTGCGG 61.440 66.667 0.00 0.00 0.00 5.69
288 289 2.359354 TCCATTTGGGTCGGTGCG 60.359 61.111 0.00 0.00 38.11 5.34
289 290 2.686816 CGTCCATTTGGGTCGGTGC 61.687 63.158 0.00 0.00 43.28 5.01
290 291 2.686816 GCGTCCATTTGGGTCGGTG 61.687 63.158 13.59 0.00 46.41 4.94
291 292 2.359478 GCGTCCATTTGGGTCGGT 60.359 61.111 13.59 0.00 46.41 4.69
292 293 2.359354 TGCGTCCATTTGGGTCGG 60.359 61.111 13.59 0.00 46.41 4.79
294 295 1.635663 CGTCTGCGTCCATTTGGGTC 61.636 60.000 0.00 0.00 38.11 4.46
295 296 1.671054 CGTCTGCGTCCATTTGGGT 60.671 57.895 0.00 0.00 38.11 4.51
296 297 0.953471 TTCGTCTGCGTCCATTTGGG 60.953 55.000 0.00 0.00 39.49 4.12
297 298 0.165944 GTTCGTCTGCGTCCATTTGG 59.834 55.000 0.00 0.00 39.49 3.28
298 299 0.865111 TGTTCGTCTGCGTCCATTTG 59.135 50.000 0.00 0.00 39.49 2.32
299 300 1.588674 TTGTTCGTCTGCGTCCATTT 58.411 45.000 0.00 0.00 39.49 2.32
300 301 1.588674 TTTGTTCGTCTGCGTCCATT 58.411 45.000 0.00 0.00 39.49 3.16
301 302 1.588674 TTTTGTTCGTCTGCGTCCAT 58.411 45.000 0.00 0.00 39.49 3.41
302 303 1.262950 CATTTTGTTCGTCTGCGTCCA 59.737 47.619 0.00 0.00 39.49 4.02
303 304 1.399727 CCATTTTGTTCGTCTGCGTCC 60.400 52.381 0.00 0.00 39.49 4.79
304 305 1.399727 CCCATTTTGTTCGTCTGCGTC 60.400 52.381 0.00 0.00 39.49 5.19
305 306 0.591170 CCCATTTTGTTCGTCTGCGT 59.409 50.000 0.00 0.00 39.49 5.24
306 307 0.591170 ACCCATTTTGTTCGTCTGCG 59.409 50.000 0.00 0.00 39.92 5.18
307 308 1.399727 CGACCCATTTTGTTCGTCTGC 60.400 52.381 0.00 0.00 0.00 4.26
308 309 1.399727 GCGACCCATTTTGTTCGTCTG 60.400 52.381 0.00 0.00 0.00 3.51
309 310 0.872388 GCGACCCATTTTGTTCGTCT 59.128 50.000 0.00 0.00 0.00 4.18
310 311 0.109919 GGCGACCCATTTTGTTCGTC 60.110 55.000 0.00 0.00 0.00 4.20
311 312 1.953772 GGCGACCCATTTTGTTCGT 59.046 52.632 0.00 0.00 0.00 3.85
312 313 4.859784 GGCGACCCATTTTGTTCG 57.140 55.556 0.00 0.00 0.00 3.95
324 325 0.107654 AGCAACTCCAATAGGGCGAC 60.108 55.000 0.00 0.00 35.46 5.19
325 326 0.178068 GAGCAACTCCAATAGGGCGA 59.822 55.000 0.00 0.00 35.46 5.54
326 327 0.179000 AGAGCAACTCCAATAGGGCG 59.821 55.000 0.00 0.00 35.46 6.13
327 328 3.118223 AGTTAGAGCAACTCCAATAGGGC 60.118 47.826 0.00 0.00 44.48 5.19
328 329 4.762289 AGTTAGAGCAACTCCAATAGGG 57.238 45.455 0.00 0.00 44.48 3.53
360 361 7.807907 CACGTTTAGAGCAACTCCAATATTTTT 59.192 33.333 0.00 0.00 0.00 1.94
361 362 7.305474 CACGTTTAGAGCAACTCCAATATTTT 58.695 34.615 0.00 0.00 0.00 1.82
362 363 6.622896 GCACGTTTAGAGCAACTCCAATATTT 60.623 38.462 0.00 0.00 36.42 1.40
363 364 5.163754 GCACGTTTAGAGCAACTCCAATATT 60.164 40.000 0.00 0.00 36.42 1.28
364 365 4.332819 GCACGTTTAGAGCAACTCCAATAT 59.667 41.667 0.00 0.00 36.42 1.28
365 366 3.682858 GCACGTTTAGAGCAACTCCAATA 59.317 43.478 0.00 0.00 36.42 1.90
366 367 2.484264 GCACGTTTAGAGCAACTCCAAT 59.516 45.455 0.00 0.00 36.42 3.16
367 368 1.871039 GCACGTTTAGAGCAACTCCAA 59.129 47.619 0.00 0.00 36.42 3.53
368 369 1.202592 TGCACGTTTAGAGCAACTCCA 60.203 47.619 0.00 0.00 43.26 3.86
369 370 1.508632 TGCACGTTTAGAGCAACTCC 58.491 50.000 0.00 0.00 43.26 3.85
384 385 8.814235 ACTAGTAATAATGTACGTGAAATGCAC 58.186 33.333 0.00 0.00 44.21 4.57
385 386 8.936070 ACTAGTAATAATGTACGTGAAATGCA 57.064 30.769 0.00 0.00 0.00 3.96
386 387 9.027129 TGACTAGTAATAATGTACGTGAAATGC 57.973 33.333 0.00 0.00 0.00 3.56
405 406 9.162764 GGTGATTGTATGTTTTACATGACTAGT 57.837 33.333 0.00 0.00 39.53 2.57
406 407 9.161629 TGGTGATTGTATGTTTTACATGACTAG 57.838 33.333 0.00 0.00 39.53 2.57
407 408 9.161629 CTGGTGATTGTATGTTTTACATGACTA 57.838 33.333 0.00 0.00 39.53 2.59
408 409 7.362056 GCTGGTGATTGTATGTTTTACATGACT 60.362 37.037 0.00 0.00 39.53 3.41
409 410 6.747280 GCTGGTGATTGTATGTTTTACATGAC 59.253 38.462 0.00 0.00 39.53 3.06
410 411 6.432472 TGCTGGTGATTGTATGTTTTACATGA 59.568 34.615 0.00 0.00 39.53 3.07
411 412 6.619744 TGCTGGTGATTGTATGTTTTACATG 58.380 36.000 2.68 0.00 39.53 3.21
412 413 6.832520 TGCTGGTGATTGTATGTTTTACAT 57.167 33.333 0.00 0.00 42.35 2.29
413 414 6.641169 TTGCTGGTGATTGTATGTTTTACA 57.359 33.333 0.00 0.00 0.00 2.41
414 415 9.632807 TTTATTGCTGGTGATTGTATGTTTTAC 57.367 29.630 0.00 0.00 0.00 2.01
416 417 9.553064 TTTTTATTGCTGGTGATTGTATGTTTT 57.447 25.926 0.00 0.00 0.00 2.43
417 418 9.723601 ATTTTTATTGCTGGTGATTGTATGTTT 57.276 25.926 0.00 0.00 0.00 2.83
420 421 9.467258 CCTATTTTTATTGCTGGTGATTGTATG 57.533 33.333 0.00 0.00 0.00 2.39
421 422 9.420118 TCCTATTTTTATTGCTGGTGATTGTAT 57.580 29.630 0.00 0.00 0.00 2.29
422 423 8.815565 TCCTATTTTTATTGCTGGTGATTGTA 57.184 30.769 0.00 0.00 0.00 2.41
423 424 7.716799 TCCTATTTTTATTGCTGGTGATTGT 57.283 32.000 0.00 0.00 0.00 2.71
424 425 8.253113 AGTTCCTATTTTTATTGCTGGTGATTG 58.747 33.333 0.00 0.00 0.00 2.67
425 426 8.366359 AGTTCCTATTTTTATTGCTGGTGATT 57.634 30.769 0.00 0.00 0.00 2.57
426 427 7.961326 AGTTCCTATTTTTATTGCTGGTGAT 57.039 32.000 0.00 0.00 0.00 3.06
427 428 7.775053 AAGTTCCTATTTTTATTGCTGGTGA 57.225 32.000 0.00 0.00 0.00 4.02
428 429 8.831715 AAAAGTTCCTATTTTTATTGCTGGTG 57.168 30.769 0.00 0.00 0.00 4.17
429 430 8.094548 GGAAAAGTTCCTATTTTTATTGCTGGT 58.905 33.333 0.00 0.00 46.57 4.00
430 431 8.479313 GGAAAAGTTCCTATTTTTATTGCTGG 57.521 34.615 0.00 0.00 46.57 4.85
446 447 3.057104 CGTATTTGGTGGGGGAAAAGTTC 60.057 47.826 0.00 0.00 0.00 3.01
447 448 2.894765 CGTATTTGGTGGGGGAAAAGTT 59.105 45.455 0.00 0.00 0.00 2.66
448 449 2.158430 ACGTATTTGGTGGGGGAAAAGT 60.158 45.455 0.00 0.00 0.00 2.66
449 450 2.521126 ACGTATTTGGTGGGGGAAAAG 58.479 47.619 0.00 0.00 0.00 2.27
450 451 2.679429 ACGTATTTGGTGGGGGAAAA 57.321 45.000 0.00 0.00 0.00 2.29
451 452 2.374504 TGTACGTATTTGGTGGGGGAAA 59.625 45.455 0.00 0.00 0.00 3.13
452 453 1.983691 TGTACGTATTTGGTGGGGGAA 59.016 47.619 0.00 0.00 0.00 3.97
453 454 1.654159 TGTACGTATTTGGTGGGGGA 58.346 50.000 0.00 0.00 0.00 4.81
454 455 2.493414 TTGTACGTATTTGGTGGGGG 57.507 50.000 0.00 0.00 0.00 5.40
455 456 2.098443 GCATTGTACGTATTTGGTGGGG 59.902 50.000 0.00 0.00 0.00 4.96
456 457 3.013921 AGCATTGTACGTATTTGGTGGG 58.986 45.455 0.00 0.00 0.00 4.61
457 458 4.695217 AAGCATTGTACGTATTTGGTGG 57.305 40.909 0.00 0.00 0.00 4.61
458 459 6.690957 CCAATAAGCATTGTACGTATTTGGTG 59.309 38.462 0.00 0.00 40.04 4.17
459 460 6.376018 ACCAATAAGCATTGTACGTATTTGGT 59.624 34.615 0.00 5.11 40.04 3.67
460 461 6.690957 CACCAATAAGCATTGTACGTATTTGG 59.309 38.462 0.00 4.55 40.04 3.28
461 462 7.428183 GTCACCAATAAGCATTGTACGTATTTG 59.572 37.037 0.00 0.00 40.04 2.32
462 463 7.414762 GGTCACCAATAAGCATTGTACGTATTT 60.415 37.037 0.00 0.00 40.04 1.40
463 464 6.037830 GGTCACCAATAAGCATTGTACGTATT 59.962 38.462 0.00 0.00 40.04 1.89
464 465 5.526111 GGTCACCAATAAGCATTGTACGTAT 59.474 40.000 0.00 0.00 40.04 3.06
465 466 4.871557 GGTCACCAATAAGCATTGTACGTA 59.128 41.667 0.00 0.00 40.04 3.57
466 467 3.687698 GGTCACCAATAAGCATTGTACGT 59.312 43.478 0.00 0.00 40.04 3.57
467 468 3.687212 TGGTCACCAATAAGCATTGTACG 59.313 43.478 0.00 0.00 40.04 3.67
468 469 5.399013 GTTGGTCACCAATAAGCATTGTAC 58.601 41.667 13.81 0.00 45.80 2.90
469 470 4.461081 GGTTGGTCACCAATAAGCATTGTA 59.539 41.667 13.81 0.00 45.80 2.41
470 471 3.258123 GGTTGGTCACCAATAAGCATTGT 59.742 43.478 13.81 0.00 45.80 2.71
471 472 3.848726 GGTTGGTCACCAATAAGCATTG 58.151 45.455 13.81 0.00 45.80 2.82
482 483 2.281276 GACACGGGGTTGGTCACC 60.281 66.667 0.00 0.00 46.46 4.02
483 484 0.953960 GATGACACGGGGTTGGTCAC 60.954 60.000 0.00 0.00 43.58 3.67
484 485 1.125093 AGATGACACGGGGTTGGTCA 61.125 55.000 0.00 0.00 44.73 4.02
513 514 3.323775 AGGGGTTGTCTCCAAGTCTTTA 58.676 45.455 0.00 0.00 0.00 1.85
517 519 1.276705 GAGAGGGGTTGTCTCCAAGTC 59.723 57.143 0.00 0.00 35.35 3.01
518 520 1.353091 GAGAGGGGTTGTCTCCAAGT 58.647 55.000 0.00 0.00 35.35 3.16
519 521 1.352083 TGAGAGGGGTTGTCTCCAAG 58.648 55.000 0.00 0.00 39.91 3.61
525 527 5.105351 CCCATTTTTATTGAGAGGGGTTGTC 60.105 44.000 0.00 0.00 0.00 3.18
526 528 4.777366 CCCATTTTTATTGAGAGGGGTTGT 59.223 41.667 0.00 0.00 0.00 3.32
527 529 5.022787 TCCCATTTTTATTGAGAGGGGTTG 58.977 41.667 0.00 0.00 35.77 3.77
528 530 5.283876 TCCCATTTTTATTGAGAGGGGTT 57.716 39.130 0.00 0.00 35.77 4.11
529 531 4.965283 TCCCATTTTTATTGAGAGGGGT 57.035 40.909 0.00 0.00 35.77 4.95
533 535 7.819415 GGAAAAGGTTCCCATTTTTATTGAGAG 59.181 37.037 0.00 0.00 46.84 3.20
558 560 2.221169 CATTGTATGTGTCCGATGGGG 58.779 52.381 0.00 0.00 37.02 4.96
560 562 4.963276 AAACATTGTATGTGTCCGATGG 57.037 40.909 0.00 0.00 44.07 3.51
565 567 7.067532 TCGTCAATAAACATTGTATGTGTCC 57.932 36.000 0.00 0.00 44.07 4.02
571 573 8.567948 GGGATTGATCGTCAATAAACATTGTAT 58.432 33.333 11.52 0.00 46.20 2.29
586 588 0.597637 GATGACGCGGGATTGATCGT 60.598 55.000 12.47 0.00 37.92 3.73
590 592 0.179111 GTGAGATGACGCGGGATTGA 60.179 55.000 12.47 0.00 0.00 2.57
594 596 2.362503 AGGTGAGATGACGCGGGA 60.363 61.111 12.47 0.00 0.00 5.14
601 603 0.690192 TTTTGGCCGAGGTGAGATGA 59.310 50.000 0.00 0.00 0.00 2.92
604 606 2.286365 AATTTTTGGCCGAGGTGAGA 57.714 45.000 0.00 0.00 0.00 3.27
606 608 2.823154 CCTAAATTTTTGGCCGAGGTGA 59.177 45.455 0.00 0.00 0.00 4.02
608 610 2.823747 GTCCTAAATTTTTGGCCGAGGT 59.176 45.455 0.00 0.00 0.00 3.85
622 624 8.638629 TTTTATTGAAAAGGGATCGTCCTAAA 57.361 30.769 4.41 0.00 35.80 1.85
626 628 8.899771 TCTATTTTTATTGAAAAGGGATCGTCC 58.100 33.333 0.00 0.00 40.35 4.79
689 691 4.572571 TGGCGTGGGGTTGGTCAC 62.573 66.667 0.00 0.00 0.00 3.67
690 692 4.572571 GTGGCGTGGGGTTGGTCA 62.573 66.667 0.00 0.00 0.00 4.02
708 710 1.532316 TCGTCCCTTGACCGAACCT 60.532 57.895 0.00 0.00 38.32 3.50
709 711 1.373873 GTCGTCCCTTGACCGAACC 60.374 63.158 0.00 0.00 38.32 3.62
710 712 1.373873 GGTCGTCCCTTGACCGAAC 60.374 63.158 0.00 0.00 45.82 3.95
711 713 3.053828 GGTCGTCCCTTGACCGAA 58.946 61.111 0.00 0.00 45.82 4.30
715 717 1.342174 TGTAAGTGGTCGTCCCTTGAC 59.658 52.381 10.89 7.23 38.18 3.18
717 719 1.616865 TCTGTAAGTGGTCGTCCCTTG 59.383 52.381 10.89 0.00 33.76 3.61
718 720 1.893801 CTCTGTAAGTGGTCGTCCCTT 59.106 52.381 0.00 2.35 33.76 3.95
719 721 1.075050 TCTCTGTAAGTGGTCGTCCCT 59.925 52.381 0.00 0.00 33.76 4.20
733 746 0.969894 CGTGAGGGTTCCTTCTCTGT 59.030 55.000 2.85 0.00 31.76 3.41
734 747 1.067495 GTCGTGAGGGTTCCTTCTCTG 60.067 57.143 2.85 0.00 31.76 3.35
736 749 0.966920 TGTCGTGAGGGTTCCTTCTC 59.033 55.000 2.85 0.00 31.76 2.87
737 750 0.969894 CTGTCGTGAGGGTTCCTTCT 59.030 55.000 2.85 0.00 31.76 2.85
738 751 0.037232 CCTGTCGTGAGGGTTCCTTC 60.037 60.000 0.00 0.00 31.76 3.46
739 752 2.058675 CCTGTCGTGAGGGTTCCTT 58.941 57.895 0.00 0.00 31.76 3.36
751 764 4.189188 CGGTAGGTCGGCCTGTCG 62.189 72.222 21.58 18.33 46.47 4.35
812 825 0.107459 AGGAGTAGGACCGACCGTAC 60.107 60.000 0.46 0.00 44.74 3.67
818 831 2.769209 AGTAGGTAGGAGTAGGACCGA 58.231 52.381 0.00 0.00 38.35 4.69
819 832 3.475575 GAAGTAGGTAGGAGTAGGACCG 58.524 54.545 0.00 0.00 38.35 4.79
820 833 3.475575 CGAAGTAGGTAGGAGTAGGACC 58.524 54.545 0.00 0.00 0.00 4.46
821 834 2.877786 GCGAAGTAGGTAGGAGTAGGAC 59.122 54.545 0.00 0.00 0.00 3.85
822 835 2.776536 AGCGAAGTAGGTAGGAGTAGGA 59.223 50.000 0.00 0.00 0.00 2.94
823 836 3.140623 GAGCGAAGTAGGTAGGAGTAGG 58.859 54.545 0.00 0.00 0.00 3.18
824 837 3.140623 GGAGCGAAGTAGGTAGGAGTAG 58.859 54.545 0.00 0.00 0.00 2.57
825 838 2.158696 GGGAGCGAAGTAGGTAGGAGTA 60.159 54.545 0.00 0.00 0.00 2.59
826 839 1.409942 GGGAGCGAAGTAGGTAGGAGT 60.410 57.143 0.00 0.00 0.00 3.85
827 840 1.320507 GGGAGCGAAGTAGGTAGGAG 58.679 60.000 0.00 0.00 0.00 3.69
1246 1259 2.706952 ATCACCAACCCCCAACACGG 62.707 60.000 0.00 0.00 0.00 4.94
1250 1263 0.684535 CCAAATCACCAACCCCCAAC 59.315 55.000 0.00 0.00 0.00 3.77
1258 1271 6.071447 CCAGAATGAATACACCAAATCACCAA 60.071 38.462 0.00 0.00 39.69 3.67
1259 1272 5.418524 CCAGAATGAATACACCAAATCACCA 59.581 40.000 0.00 0.00 39.69 4.17
1275 1288 3.524095 ACACAACCAATCCCAGAATGA 57.476 42.857 0.00 0.00 39.69 2.57
1284 1297 6.809196 TGTAACTGAAAACAACACAACCAATC 59.191 34.615 0.00 0.00 0.00 2.67
1319 1332 5.393027 GCAACCGGACTGAATATTTCACAAT 60.393 40.000 9.46 0.00 35.46 2.71
1322 1335 3.485216 CGCAACCGGACTGAATATTTCAC 60.485 47.826 9.46 0.00 35.46 3.18
1332 1345 2.058829 AAAACAGCGCAACCGGACTG 62.059 55.000 9.46 9.96 36.22 3.51
1337 1350 0.584396 TACTGAAAACAGCGCAACCG 59.416 50.000 11.47 0.00 37.57 4.44
1356 1369 3.128764 TCATATCGAAGCAACGACAGACT 59.871 43.478 7.35 0.00 44.84 3.24
1357 1370 3.435566 TCATATCGAAGCAACGACAGAC 58.564 45.455 7.35 0.00 44.84 3.51
1358 1371 3.775661 TCATATCGAAGCAACGACAGA 57.224 42.857 7.35 4.06 44.84 3.41
1359 1372 4.428922 CTTCATATCGAAGCAACGACAG 57.571 45.455 7.35 2.05 44.57 3.51
1414 1454 6.408035 AGATCTCGAGTCAAACTAGAGTACA 58.592 40.000 13.13 0.19 44.80 2.90
1473 1513 4.082125 AGTTGATGGTTTAAGCAGAAGGG 58.918 43.478 2.68 0.00 0.00 3.95
1490 1531 4.098960 ACTCTTACACCGACAAGAAGTTGA 59.901 41.667 0.00 0.00 37.10 3.18
1507 1548 8.869897 CATGCTATGTTTCGAAGTTAACTCTTA 58.130 33.333 8.95 0.00 0.00 2.10
1717 1759 7.393234 CCCTAGTCAAAGTTAATCATTCACCAA 59.607 37.037 0.00 0.00 0.00 3.67
1750 1792 8.202137 GTGAACCTTAGCCACTAAGATATTACA 58.798 37.037 14.47 4.95 44.24 2.41
1751 1793 7.656542 GGTGAACCTTAGCCACTAAGATATTAC 59.343 40.741 14.47 7.68 44.24 1.89
1752 1794 7.567622 AGGTGAACCTTAGCCACTAAGATATTA 59.432 37.037 14.47 0.00 46.09 0.98
1753 1795 6.387220 AGGTGAACCTTAGCCACTAAGATATT 59.613 38.462 14.47 6.95 46.09 1.28
1754 1796 5.905913 AGGTGAACCTTAGCCACTAAGATAT 59.094 40.000 14.47 2.18 46.09 1.63
1755 1797 5.278061 AGGTGAACCTTAGCCACTAAGATA 58.722 41.667 14.47 0.00 46.09 1.98
1756 1798 4.104831 AGGTGAACCTTAGCCACTAAGAT 58.895 43.478 14.47 4.61 46.09 2.40
1757 1799 3.517612 AGGTGAACCTTAGCCACTAAGA 58.482 45.455 14.47 0.00 46.09 2.10
1758 1800 3.983044 AGGTGAACCTTAGCCACTAAG 57.017 47.619 7.29 7.29 46.09 2.18
1759 1801 6.177610 CAATTAGGTGAACCTTAGCCACTAA 58.822 40.000 7.43 0.00 46.09 2.24
1760 1802 5.249852 ACAATTAGGTGAACCTTAGCCACTA 59.750 40.000 7.43 0.00 46.09 2.74
1761 1803 4.042934 ACAATTAGGTGAACCTTAGCCACT 59.957 41.667 7.43 0.00 46.09 4.00
1762 1804 4.156008 CACAATTAGGTGAACCTTAGCCAC 59.844 45.833 7.43 0.00 46.09 5.01
1763 1805 4.331968 CACAATTAGGTGAACCTTAGCCA 58.668 43.478 7.43 0.00 46.09 4.75
1764 1806 3.694566 CCACAATTAGGTGAACCTTAGCC 59.305 47.826 7.43 0.00 46.09 3.93
1765 1807 4.332828 ACCACAATTAGGTGAACCTTAGC 58.667 43.478 7.43 0.00 46.09 3.09
1775 1817 5.308825 CAGAAAGTCTCACCACAATTAGGT 58.691 41.667 0.00 0.00 40.85 3.08
1776 1818 4.154918 GCAGAAAGTCTCACCACAATTAGG 59.845 45.833 0.00 0.00 0.00 2.69
1777 1819 4.756642 TGCAGAAAGTCTCACCACAATTAG 59.243 41.667 0.00 0.00 0.00 1.73
1778 1820 4.713553 TGCAGAAAGTCTCACCACAATTA 58.286 39.130 0.00 0.00 0.00 1.40
1779 1821 3.554934 TGCAGAAAGTCTCACCACAATT 58.445 40.909 0.00 0.00 0.00 2.32
1780 1822 3.213206 TGCAGAAAGTCTCACCACAAT 57.787 42.857 0.00 0.00 0.00 2.71
1781 1823 2.708216 TGCAGAAAGTCTCACCACAA 57.292 45.000 0.00 0.00 0.00 3.33
1782 1824 2.708216 TTGCAGAAAGTCTCACCACA 57.292 45.000 0.00 0.00 0.00 4.17
1783 1825 2.158449 CGATTGCAGAAAGTCTCACCAC 59.842 50.000 0.00 0.00 0.00 4.16
1784 1826 2.224281 ACGATTGCAGAAAGTCTCACCA 60.224 45.455 0.00 0.00 0.00 4.17
1785 1827 2.417719 ACGATTGCAGAAAGTCTCACC 58.582 47.619 0.00 0.00 0.00 4.02
1786 1828 4.627467 ACATACGATTGCAGAAAGTCTCAC 59.373 41.667 0.00 0.00 0.00 3.51
1787 1829 4.627035 CACATACGATTGCAGAAAGTCTCA 59.373 41.667 0.00 0.00 0.00 3.27
1788 1830 4.493220 GCACATACGATTGCAGAAAGTCTC 60.493 45.833 0.00 0.00 38.68 3.36
1789 1831 3.372206 GCACATACGATTGCAGAAAGTCT 59.628 43.478 0.00 0.00 38.68 3.24
1790 1832 3.125146 TGCACATACGATTGCAGAAAGTC 59.875 43.478 0.00 0.00 43.79 3.01
1791 1833 3.073678 TGCACATACGATTGCAGAAAGT 58.926 40.909 0.00 0.00 43.79 2.66
1792 1834 3.745332 TGCACATACGATTGCAGAAAG 57.255 42.857 0.00 0.00 43.79 2.62
1797 1839 1.135717 GCACTTGCACATACGATTGCA 60.136 47.619 0.00 0.00 46.93 4.08
1798 1840 1.538276 GCACTTGCACATACGATTGC 58.462 50.000 0.00 0.00 41.59 3.56
1810 1852 0.318445 CTGCTCAAGGTTGCACTTGC 60.318 55.000 11.27 3.08 45.72 4.01
1812 1854 1.602311 CTCTGCTCAAGGTTGCACTT 58.398 50.000 0.00 0.00 35.20 3.16
1813 1855 0.888285 GCTCTGCTCAAGGTTGCACT 60.888 55.000 0.00 0.00 35.20 4.40
1814 1856 1.168407 TGCTCTGCTCAAGGTTGCAC 61.168 55.000 0.00 0.00 35.20 4.57
1815 1857 0.251033 ATGCTCTGCTCAAGGTTGCA 60.251 50.000 0.00 0.00 37.63 4.08
1816 1858 0.886563 AATGCTCTGCTCAAGGTTGC 59.113 50.000 0.00 0.00 0.00 4.17
1817 1859 2.156917 TCAATGCTCTGCTCAAGGTTG 58.843 47.619 0.00 0.00 0.00 3.77
1818 1860 2.574006 TCAATGCTCTGCTCAAGGTT 57.426 45.000 0.00 0.00 0.00 3.50
1819 1861 2.574006 TTCAATGCTCTGCTCAAGGT 57.426 45.000 0.00 0.00 0.00 3.50
1820 1862 5.769484 ATAATTCAATGCTCTGCTCAAGG 57.231 39.130 0.00 0.00 0.00 3.61
1821 1863 6.017357 TGCTATAATTCAATGCTCTGCTCAAG 60.017 38.462 0.00 0.00 0.00 3.02
1822 1864 5.824097 TGCTATAATTCAATGCTCTGCTCAA 59.176 36.000 0.00 0.00 0.00 3.02
1823 1865 5.237996 GTGCTATAATTCAATGCTCTGCTCA 59.762 40.000 0.00 0.00 0.00 4.26
1824 1866 5.469421 AGTGCTATAATTCAATGCTCTGCTC 59.531 40.000 0.00 0.00 0.00 4.26
1825 1867 5.374921 AGTGCTATAATTCAATGCTCTGCT 58.625 37.500 0.00 0.00 0.00 4.24
1826 1868 5.686159 AGTGCTATAATTCAATGCTCTGC 57.314 39.130 0.00 0.00 0.00 4.26
1827 1869 8.543862 TCATAGTGCTATAATTCAATGCTCTG 57.456 34.615 0.00 0.00 0.00 3.35
1828 1870 9.736414 ATTCATAGTGCTATAATTCAATGCTCT 57.264 29.630 0.00 0.00 0.00 4.09
1829 1871 9.770503 CATTCATAGTGCTATAATTCAATGCTC 57.229 33.333 0.00 0.00 0.00 4.26
1830 1872 8.737175 CCATTCATAGTGCTATAATTCAATGCT 58.263 33.333 0.00 0.00 0.00 3.79
1831 1873 8.733458 TCCATTCATAGTGCTATAATTCAATGC 58.267 33.333 0.00 0.00 0.00 3.56
1839 1881 9.725019 CAGGTTAATCCATTCATAGTGCTATAA 57.275 33.333 0.00 0.00 39.02 0.98
1840 1882 8.321353 CCAGGTTAATCCATTCATAGTGCTATA 58.679 37.037 0.00 0.00 39.02 1.31
1841 1883 7.170965 CCAGGTTAATCCATTCATAGTGCTAT 58.829 38.462 0.00 0.00 39.02 2.97
1842 1884 6.101150 ACCAGGTTAATCCATTCATAGTGCTA 59.899 38.462 0.00 0.00 39.02 3.49
1843 1885 5.103940 ACCAGGTTAATCCATTCATAGTGCT 60.104 40.000 0.00 0.00 39.02 4.40
1844 1886 5.133221 ACCAGGTTAATCCATTCATAGTGC 58.867 41.667 0.00 0.00 39.02 4.40
1845 1887 7.012704 CAGAACCAGGTTAATCCATTCATAGTG 59.987 40.741 4.25 0.00 39.02 2.74
1846 1888 7.056635 CAGAACCAGGTTAATCCATTCATAGT 58.943 38.462 4.25 0.00 39.02 2.12
1847 1889 7.282585 TCAGAACCAGGTTAATCCATTCATAG 58.717 38.462 4.25 0.00 39.02 2.23
1848 1890 7.206789 TCAGAACCAGGTTAATCCATTCATA 57.793 36.000 4.25 0.00 39.02 2.15
1849 1891 6.078456 TCAGAACCAGGTTAATCCATTCAT 57.922 37.500 4.25 0.00 39.02 2.57
1850 1892 5.512942 TCAGAACCAGGTTAATCCATTCA 57.487 39.130 4.25 0.00 39.02 2.57
1851 1893 7.775561 AGTTATCAGAACCAGGTTAATCCATTC 59.224 37.037 4.25 0.00 39.02 2.67
1852 1894 7.643123 AGTTATCAGAACCAGGTTAATCCATT 58.357 34.615 4.25 0.00 39.02 3.16
1853 1895 7.213178 AGTTATCAGAACCAGGTTAATCCAT 57.787 36.000 4.25 0.00 39.02 3.41
1854 1896 6.636454 AGTTATCAGAACCAGGTTAATCCA 57.364 37.500 4.25 0.00 39.02 3.41
1855 1897 7.610305 TCAAAGTTATCAGAACCAGGTTAATCC 59.390 37.037 4.25 0.00 0.00 3.01
1856 1898 8.451748 GTCAAAGTTATCAGAACCAGGTTAATC 58.548 37.037 4.25 0.00 0.00 1.75
1857 1899 8.164070 AGTCAAAGTTATCAGAACCAGGTTAAT 58.836 33.333 4.25 2.30 0.00 1.40
1858 1900 7.514721 AGTCAAAGTTATCAGAACCAGGTTAA 58.485 34.615 4.25 0.00 0.00 2.01
1859 1901 7.074653 AGTCAAAGTTATCAGAACCAGGTTA 57.925 36.000 4.25 0.00 0.00 2.85
1860 1902 5.941788 AGTCAAAGTTATCAGAACCAGGTT 58.058 37.500 3.79 3.79 0.00 3.50
1861 1903 5.568620 AGTCAAAGTTATCAGAACCAGGT 57.431 39.130 0.00 0.00 0.00 4.00
1862 1904 9.319143 CTATAAGTCAAAGTTATCAGAACCAGG 57.681 37.037 0.00 0.00 0.00 4.45
1863 1905 9.877178 ACTATAAGTCAAAGTTATCAGAACCAG 57.123 33.333 0.00 0.00 0.00 4.00
1879 1921 9.609346 GGCCTTAGTTATCAAAACTATAAGTCA 57.391 33.333 0.00 0.00 33.27 3.41
1880 1922 9.833917 AGGCCTTAGTTATCAAAACTATAAGTC 57.166 33.333 0.00 0.00 33.27 3.01
1885 1927 9.614792 CAAGTAGGCCTTAGTTATCAAAACTAT 57.385 33.333 12.58 0.00 33.27 2.12
1886 1928 8.599792 ACAAGTAGGCCTTAGTTATCAAAACTA 58.400 33.333 12.58 0.00 0.00 2.24
1887 1929 7.459234 ACAAGTAGGCCTTAGTTATCAAAACT 58.541 34.615 12.58 0.00 0.00 2.66
1888 1930 7.683437 ACAAGTAGGCCTTAGTTATCAAAAC 57.317 36.000 12.58 0.00 0.00 2.43
1889 1931 9.969001 ATTACAAGTAGGCCTTAGTTATCAAAA 57.031 29.630 12.58 0.00 0.00 2.44
1890 1932 9.391006 CATTACAAGTAGGCCTTAGTTATCAAA 57.609 33.333 12.58 0.00 0.00 2.69
1891 1933 8.545472 ACATTACAAGTAGGCCTTAGTTATCAA 58.455 33.333 12.58 0.00 0.00 2.57
1892 1934 8.086143 ACATTACAAGTAGGCCTTAGTTATCA 57.914 34.615 12.58 0.00 0.00 2.15
1893 1935 8.422566 AGACATTACAAGTAGGCCTTAGTTATC 58.577 37.037 12.58 0.00 0.00 1.75
1894 1936 8.320338 AGACATTACAAGTAGGCCTTAGTTAT 57.680 34.615 12.58 1.31 0.00 1.89
1895 1937 7.729124 AGACATTACAAGTAGGCCTTAGTTA 57.271 36.000 12.58 0.00 0.00 2.24
1896 1938 6.622427 AGACATTACAAGTAGGCCTTAGTT 57.378 37.500 12.58 3.37 0.00 2.24
1897 1939 6.622427 AAGACATTACAAGTAGGCCTTAGT 57.378 37.500 12.58 7.48 0.00 2.24
1898 1940 7.707035 CACTAAGACATTACAAGTAGGCCTTAG 59.293 40.741 12.58 3.43 37.58 2.18
1899 1941 7.398047 TCACTAAGACATTACAAGTAGGCCTTA 59.602 37.037 12.58 0.00 0.00 2.69
1900 1942 6.212791 TCACTAAGACATTACAAGTAGGCCTT 59.787 38.462 12.58 0.00 0.00 4.35
1901 1943 5.720041 TCACTAAGACATTACAAGTAGGCCT 59.280 40.000 11.78 11.78 0.00 5.19
1902 1944 5.811100 GTCACTAAGACATTACAAGTAGGCC 59.189 44.000 0.00 0.00 46.77 5.19
1903 1945 6.889019 GTCACTAAGACATTACAAGTAGGC 57.111 41.667 0.00 0.00 46.77 3.93
1945 1987 3.281727 ACCTTTGCAGAAAGTCTCACA 57.718 42.857 0.00 0.00 37.47 3.58
2235 2280 5.866633 CAGTTCCTTGCAGTAAAACAAAACA 59.133 36.000 0.00 0.00 0.00 2.83
2236 2281 6.096695 TCAGTTCCTTGCAGTAAAACAAAAC 58.903 36.000 0.00 0.00 0.00 2.43
2244 2289 7.719633 AGAAAAGTTATCAGTTCCTTGCAGTAA 59.280 33.333 0.00 0.00 0.00 2.24
2330 2378 2.797156 CGAAGTTCTGACACTGTCCAAG 59.203 50.000 6.72 0.00 0.00 3.61
2348 2396 6.072119 TGCTGTCTTCTAGTCTAATCAACGAA 60.072 38.462 0.00 0.00 0.00 3.85
2685 2733 6.293004 TGACACCCAAGAAAACTTGAAATT 57.707 33.333 10.89 0.00 36.50 1.82
2698 2746 1.273327 GGGAAGCATTTGACACCCAAG 59.727 52.381 0.00 0.00 37.50 3.61
2708 2756 1.359130 AGGCCTACAAGGGAAGCATTT 59.641 47.619 1.29 0.00 35.37 2.32
2709 2757 1.002857 AGGCCTACAAGGGAAGCATT 58.997 50.000 1.29 0.00 35.37 3.56
2710 2758 0.257039 CAGGCCTACAAGGGAAGCAT 59.743 55.000 3.98 0.00 35.37 3.79
2711 2759 1.133809 ACAGGCCTACAAGGGAAGCA 61.134 55.000 3.98 0.00 35.37 3.91
2712 2760 0.909623 TACAGGCCTACAAGGGAAGC 59.090 55.000 3.98 0.00 35.37 3.86
2713 2761 2.467880 TCTACAGGCCTACAAGGGAAG 58.532 52.381 3.98 0.00 35.37 3.46
2714 2762 2.634639 TCTACAGGCCTACAAGGGAA 57.365 50.000 3.98 0.00 35.37 3.97
2715 2763 2.868964 ATCTACAGGCCTACAAGGGA 57.131 50.000 3.98 0.00 35.37 4.20
2767 2816 5.278660 CCCTGAATATGCTAGTTGGCAATTC 60.279 44.000 1.92 0.90 45.68 2.17
2780 2829 4.498009 CCGATGTCAAAACCCTGAATATGC 60.498 45.833 0.00 0.00 0.00 3.14
2785 2834 2.226330 CACCGATGTCAAAACCCTGAA 58.774 47.619 0.00 0.00 0.00 3.02
2826 2875 3.354089 ACAATGGAAAACAGAAGCACG 57.646 42.857 0.00 0.00 0.00 5.34
2884 2933 4.293494 TCCAGATGGATAGTCAGAGCTTT 58.707 43.478 0.00 0.00 39.78 3.51
2912 2961 8.352137 TCCACAATCAATATTGACAGATGTTT 57.648 30.769 20.19 6.36 44.50 2.83
2977 3026 4.863689 TGCATCAACAAGAAAAACACAGTG 59.136 37.500 0.00 0.00 0.00 3.66
2986 3035 6.205076 CCATCCAAAATTGCATCAACAAGAAA 59.795 34.615 0.00 0.00 31.96 2.52
3192 3241 5.528043 AGACCAGCAGTATTGATCTAGTG 57.472 43.478 0.00 0.00 0.00 2.74
3220 3269 1.164411 TGCAACAATTAGCTGTCCGG 58.836 50.000 0.00 0.00 0.00 5.14
3340 3390 5.283457 ACCTCAGCTTAGTCATATGGAAC 57.717 43.478 2.13 0.00 0.00 3.62
3397 3447 5.645497 AGACAGATGAGCAAAATGTACTTCC 59.355 40.000 0.00 0.00 0.00 3.46
3571 3621 3.093057 AGCGGAAGAGAAGTATGACAGT 58.907 45.455 0.00 0.00 0.00 3.55
3714 3767 1.664151 GTTTCCACCCGATGTTCGATC 59.336 52.381 0.00 0.00 43.74 3.69
3855 3908 1.202428 GCTATCTGGACGTCCTTGGTC 60.202 57.143 33.39 15.26 36.82 4.02
3906 3959 1.000233 CACTGCGCTGCACATTTGTC 61.000 55.000 14.80 0.00 33.79 3.18
3934 3987 3.270027 TGACGCAAGAAAATCGGATGAT 58.730 40.909 0.00 0.00 43.62 2.45
3937 3990 3.270027 TGATGACGCAAGAAAATCGGAT 58.730 40.909 0.00 0.00 43.62 4.18
3949 4003 3.126171 CCCGTTTATTCTTTGATGACGCA 59.874 43.478 0.00 0.00 0.00 5.24
4003 4057 6.380079 AATATGTTCCTCCAAGTTGAGTCT 57.620 37.500 3.87 0.00 0.00 3.24
4017 4071 9.620660 AAACAATAAACGTCTCAAATATGTTCC 57.379 29.630 0.00 0.00 0.00 3.62
4090 4144 2.459969 ATGTGCCACAGTCCCACCA 61.460 57.895 3.00 0.00 0.00 4.17
4106 4160 6.695713 CACCAACAGCAATAGAAATGATCATG 59.304 38.462 9.46 0.00 0.00 3.07
4258 4312 6.847956 TTGATTTTGCTCACCTCAAAAATG 57.152 33.333 5.21 0.00 43.77 2.32
4268 4324 7.116662 TGTTATGCTGAATTTGATTTTGCTCAC 59.883 33.333 0.00 0.00 0.00 3.51
4360 4416 0.250901 AAACCTCCATGCTCGCTTGT 60.251 50.000 4.43 0.00 0.00 3.16
4403 4459 7.489113 CACAAAGACAACTTAGAGCAAAAATGT 59.511 33.333 0.00 0.00 35.05 2.71
4544 4760 8.812972 ACTTGATAATAACCGCTTATATGGAGA 58.187 33.333 0.00 0.00 0.00 3.71
4553 4769 6.746120 ACTCGATACTTGATAATAACCGCTT 58.254 36.000 0.00 0.00 0.00 4.68
4567 4783 6.540438 TGAAATTACCCAGACTCGATACTT 57.460 37.500 0.00 0.00 0.00 2.24
4637 4853 1.336517 TGAAACACGCGGAAGTCCTAG 60.337 52.381 12.47 0.00 0.00 3.02
4696 4912 4.207955 GTTCTTCCTTGGTCTTTCTGGTT 58.792 43.478 0.00 0.00 0.00 3.67
4713 4929 6.457257 GCAAAATTCTGCAAACACATGTTCTT 60.457 34.615 0.00 0.00 42.17 2.52
4805 5021 5.364778 TCGAATTTGATGATGGTTATCGGT 58.635 37.500 0.00 0.00 36.04 4.69
4809 5025 7.880160 TTCCTTCGAATTTGATGATGGTTAT 57.120 32.000 9.62 0.00 0.00 1.89
4815 5031 6.588719 TGGTTTTCCTTCGAATTTGATGAT 57.411 33.333 9.62 0.00 41.38 2.45
4818 5034 6.405842 GGCTATGGTTTTCCTTCGAATTTGAT 60.406 38.462 0.00 0.00 41.38 2.57
4844 5060 1.295423 GGCTCACAACGCCCTTCTA 59.705 57.895 0.00 0.00 41.73 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.