Multiple sequence alignment - TraesCS3A01G301600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G301600 chr3A 100.000 6809 0 0 1 6809 535194024 535200832 0.000000e+00 12574.0
1 TraesCS3A01G301600 chr3B 90.783 5110 312 52 893 5950 541085532 541080530 0.000000e+00 6680.0
2 TraesCS3A01G301600 chr3B 91.760 716 57 2 11 725 541203784 541203070 0.000000e+00 994.0
3 TraesCS3A01G301600 chr3B 82.413 489 49 17 6063 6519 541080515 541080032 6.400000e-105 392.0
4 TraesCS3A01G301600 chr3B 95.745 94 3 1 720 812 541091147 541091054 4.250000e-32 150.0
5 TraesCS3A01G301600 chr3D 93.341 3574 156 36 2997 6519 415158277 415154735 0.000000e+00 5206.0
6 TraesCS3A01G301600 chr3D 89.919 2103 111 40 857 2893 415160434 415158367 0.000000e+00 2615.0
7 TraesCS3A01G301600 chr3D 92.102 747 42 9 4 737 415161417 415160675 0.000000e+00 1037.0
8 TraesCS3A01G301600 chr6D 89.011 91 9 1 5830 5920 12366651 12366562 2.010000e-20 111.0
9 TraesCS3A01G301600 chr6A 86.813 91 10 2 5830 5920 13742494 13742406 4.350000e-17 100.0
10 TraesCS3A01G301600 chr6B 87.209 86 10 1 5835 5920 22723895 22723811 5.620000e-16 97.1
11 TraesCS3A01G301600 chr7A 91.667 60 5 0 5830 5889 510160314 510160373 4.380000e-12 84.2
12 TraesCS3A01G301600 chr7A 93.182 44 3 0 5846 5889 367123475 367123432 1.590000e-06 65.8
13 TraesCS3A01G301600 chr1A 90.000 60 6 0 5830 5889 544146416 544146475 2.040000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G301600 chr3A 535194024 535200832 6808 False 12574.000000 12574 100.000000 1 6809 1 chr3A.!!$F1 6808
1 TraesCS3A01G301600 chr3B 541080032 541085532 5500 True 3536.000000 6680 86.598000 893 6519 2 chr3B.!!$R3 5626
2 TraesCS3A01G301600 chr3B 541203070 541203784 714 True 994.000000 994 91.760000 11 725 1 chr3B.!!$R2 714
3 TraesCS3A01G301600 chr3D 415154735 415161417 6682 True 2952.666667 5206 91.787333 4 6519 3 chr3D.!!$R1 6515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
872 1012 0.444651 TCGCGGCAGAAATTTAACCG 59.555 50.0 17.30 17.30 46.50 4.44 F
1239 1431 0.679505 TACTTGAGCGCCTGTTCTGT 59.320 50.0 2.29 1.53 0.00 3.41 F
2200 2406 0.247736 AAGCTCGCTGAGGTACCTTG 59.752 55.0 17.53 13.29 39.62 3.61 F
3084 3298 0.520404 GTCTGCGTTCCTACAGTCGA 59.480 55.0 0.00 0.00 35.37 4.20 F
4020 4267 1.197430 AGGCTCACTTCCTGAGGTGG 61.197 60.0 9.21 0.00 46.08 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 1980 1.089920 CTCCAAAGAACCATCTGGCG 58.910 55.000 0.00 0.0 39.32 5.69 R
3067 3281 1.199327 TCTTCGACTGTAGGAACGCAG 59.801 52.381 0.00 0.0 40.72 5.18 R
4132 4388 4.457257 GCTGAAGTTAAAGCAGAGTCCAAT 59.543 41.667 5.38 0.0 39.31 3.16 R
5033 5294 0.593128 CCAAGCAAACGAGGAACTGG 59.407 55.000 0.00 0.0 41.55 4.00 R
5930 6199 0.107703 TGTCCATCTTGGTGATCCGC 60.108 55.000 0.00 0.0 39.03 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 170 2.049433 GTAGCCGCACACGACACT 60.049 61.111 0.00 0.00 43.93 3.55
270 271 6.989169 GTGTGAATATTTCCTCTGCTCATACT 59.011 38.462 0.00 0.00 0.00 2.12
276 277 8.894768 ATATTTCCTCTGCTCATACTGTAAAC 57.105 34.615 0.00 0.00 0.00 2.01
310 311 6.228273 ACGATAACTAAATTCATGATGCGG 57.772 37.500 0.00 0.00 0.00 5.69
327 328 2.223386 TGCGGCAGTACAGTTTTTGTTC 60.223 45.455 0.00 0.00 41.29 3.18
448 449 2.550978 GCGCTGCCAAATAGAGTTCTA 58.449 47.619 0.00 0.00 0.00 2.10
451 452 3.739519 CGCTGCCAAATAGAGTTCTAGCT 60.740 47.826 0.00 0.00 0.00 3.32
472 473 4.023707 GCTACAGAACAGAAGCAACACAAT 60.024 41.667 0.00 0.00 35.05 2.71
522 524 2.097954 GCATTGATGTTCGCCAGATGAA 59.902 45.455 0.00 0.00 0.00 2.57
525 527 4.844998 TTGATGTTCGCCAGATGAAAAA 57.155 36.364 0.00 0.00 0.00 1.94
556 558 6.238130 GGTTTATTCCTACTGCGATCACTTTC 60.238 42.308 0.00 0.00 0.00 2.62
561 564 1.160137 ACTGCGATCACTTTCTTGCC 58.840 50.000 0.00 0.00 0.00 4.52
577 580 0.812549 TGCCGAATGTCACGCTAGTA 59.187 50.000 0.00 0.00 0.00 1.82
587 590 3.503827 TCACGCTAGTATTGTGACCAG 57.496 47.619 5.52 0.00 37.69 4.00
608 612 5.932303 CCAGTGGTAATACCTCCATTTATCG 59.068 44.000 11.16 0.00 39.58 2.92
622 626 4.332819 CCATTTATCGGAGAACACAGAACC 59.667 45.833 0.00 0.00 43.58 3.62
640 644 5.468746 CAGAACCTTCCTTTGTGATTTACGA 59.531 40.000 0.00 0.00 0.00 3.43
703 716 4.578928 AGTGTGTGGTGGATTTTCTGTAAC 59.421 41.667 0.00 0.00 0.00 2.50
704 717 4.578928 GTGTGTGGTGGATTTTCTGTAACT 59.421 41.667 0.00 0.00 0.00 2.24
757 826 5.741388 AAGTATTTGCCGAGCTGAAATAG 57.259 39.130 0.00 0.00 0.00 1.73
760 829 1.737838 TTGCCGAGCTGAAATAGTGG 58.262 50.000 0.00 0.00 0.00 4.00
761 830 0.613260 TGCCGAGCTGAAATAGTGGT 59.387 50.000 0.00 0.00 0.00 4.16
763 832 2.235155 TGCCGAGCTGAAATAGTGGTTA 59.765 45.455 0.00 0.00 0.00 2.85
765 834 3.309954 GCCGAGCTGAAATAGTGGTTAAG 59.690 47.826 0.00 0.00 0.00 1.85
767 836 4.806247 CCGAGCTGAAATAGTGGTTAAGAG 59.194 45.833 0.00 0.00 0.00 2.85
768 837 5.411781 CGAGCTGAAATAGTGGTTAAGAGT 58.588 41.667 0.00 0.00 0.00 3.24
770 839 6.183360 CGAGCTGAAATAGTGGTTAAGAGTTG 60.183 42.308 0.00 0.00 0.00 3.16
771 840 6.769512 AGCTGAAATAGTGGTTAAGAGTTGA 58.230 36.000 0.00 0.00 0.00 3.18
772 841 6.876257 AGCTGAAATAGTGGTTAAGAGTTGAG 59.124 38.462 0.00 0.00 0.00 3.02
773 842 6.874134 GCTGAAATAGTGGTTAAGAGTTGAGA 59.126 38.462 0.00 0.00 0.00 3.27
774 843 7.387948 GCTGAAATAGTGGTTAAGAGTTGAGAA 59.612 37.037 0.00 0.00 0.00 2.87
792 861 7.652909 AGTTGAGAAAAATCATTTGCAAATCGA 59.347 29.630 21.70 20.41 0.00 3.59
827 896 9.632807 TTTTTGATAGTTTGATAATGGGAAACG 57.367 29.630 0.00 0.00 35.23 3.60
830 899 7.981142 TGATAGTTTGATAATGGGAAACGAAC 58.019 34.615 0.00 0.00 35.23 3.95
842 911 1.947456 GAAACGAACTGAAGGCAAGGT 59.053 47.619 0.00 0.00 0.00 3.50
871 1011 1.466866 GGTCGCGGCAGAAATTTAACC 60.467 52.381 14.93 0.41 0.00 2.85
872 1012 0.444651 TCGCGGCAGAAATTTAACCG 59.555 50.000 17.30 17.30 46.50 4.44
888 1028 0.945813 ACCGCGAATTCCACGAAAAA 59.054 45.000 8.23 0.00 0.00 1.94
1035 1182 1.287730 GAGACAGAGCGCAACACCAG 61.288 60.000 11.47 0.00 0.00 4.00
1239 1431 0.679505 TACTTGAGCGCCTGTTCTGT 59.320 50.000 2.29 1.53 0.00 3.41
1333 1528 7.549488 TCTCTAGCACTGCTTTTAAATAGGAAC 59.451 37.037 9.30 0.00 40.44 3.62
1352 1547 9.941325 ATAGGAACATGCATTTGTTAATTTTCA 57.059 25.926 5.69 0.00 39.85 2.69
1353 1548 8.314143 AGGAACATGCATTTGTTAATTTTCAG 57.686 30.769 5.69 0.00 39.85 3.02
1354 1549 8.149647 AGGAACATGCATTTGTTAATTTTCAGA 58.850 29.630 5.69 0.00 39.85 3.27
1356 1551 9.749490 GAACATGCATTTGTTAATTTTCAGATG 57.251 29.630 5.69 7.96 39.85 2.90
1357 1552 8.836268 ACATGCATTTGTTAATTTTCAGATGT 57.164 26.923 0.00 0.00 31.63 3.06
1358 1553 9.926158 ACATGCATTTGTTAATTTTCAGATGTA 57.074 25.926 0.00 9.10 31.63 2.29
1432 1630 1.392853 GCTTCAGTTGATGTCAGAGCG 59.607 52.381 0.00 0.00 0.00 5.03
1488 1690 2.565841 CCCATTGACTAGCTGCTTACC 58.434 52.381 7.79 0.00 0.00 2.85
1512 1714 3.605634 TGTATGTAGGTGTGGTGATTGC 58.394 45.455 0.00 0.00 0.00 3.56
1513 1715 2.877097 ATGTAGGTGTGGTGATTGCA 57.123 45.000 0.00 0.00 0.00 4.08
1538 1740 4.129737 AGCGGTGGTGATCGACGG 62.130 66.667 0.00 0.00 0.00 4.79
1599 1803 1.097547 AAGGCATATCTGTGTGCGGC 61.098 55.000 0.00 0.00 42.72 6.53
1604 1808 2.369257 ATATCTGTGTGCGGCTCGGG 62.369 60.000 0.00 0.00 0.00 5.14
1638 1842 2.157738 GGAACAAACTGCAGATCAGCT 58.842 47.619 23.35 0.00 46.76 4.24
1655 1859 2.163010 CAGCTTGTGTTGCTAGGAATGG 59.837 50.000 0.00 0.00 38.92 3.16
1776 1980 7.974482 AATAAACACCACAGTAAGGACTAAC 57.026 36.000 0.00 0.00 33.32 2.34
1822 2026 4.221342 TGCTCGTAACAGTAACAGTAACG 58.779 43.478 0.00 0.00 0.00 3.18
1914 2118 4.274978 TGGATGTACAGACTCGGATACAA 58.725 43.478 0.33 0.00 31.65 2.41
1969 2173 7.036220 GCCGCAACTACTAATATCTGTCATAT 58.964 38.462 0.00 0.00 0.00 1.78
1970 2174 7.545965 GCCGCAACTACTAATATCTGTCATATT 59.454 37.037 0.00 0.00 0.00 1.28
1971 2175 9.424319 CCGCAACTACTAATATCTGTCATATTT 57.576 33.333 0.00 0.00 0.00 1.40
2043 2247 5.530519 TGAATCTAACATCGTTTCACTGC 57.469 39.130 0.00 0.00 0.00 4.40
2081 2285 8.030692 ACAACTGATACATCCAAATGTTTGATG 58.969 33.333 7.04 10.31 43.74 3.07
2086 2290 9.853555 TGATACATCCAAATGTTTGATGTTTAC 57.146 29.630 19.03 14.11 43.74 2.01
2087 2291 9.301153 GATACATCCAAATGTTTGATGTTTACC 57.699 33.333 19.03 9.58 43.74 2.85
2090 2294 8.210265 ACATCCAAATGTTTGATGTTTACCTTT 58.790 29.630 7.04 0.00 43.74 3.11
2093 2297 8.043710 TCCAAATGTTTGATGTTTACCTTTTGT 58.956 29.630 7.04 0.00 40.55 2.83
2108 2312 4.277423 ACCTTTTGTAAATCCAACCTCACG 59.723 41.667 0.00 0.00 0.00 4.35
2122 2328 2.224281 ACCTCACGATTGAACTGCTTGA 60.224 45.455 0.00 0.00 0.00 3.02
2150 2356 7.938490 TCTTGCCAGTATGCATTGAATATAGAA 59.062 33.333 3.54 0.00 41.70 2.10
2162 2368 9.251792 GCATTGAATATAGAACAATTTGATGCA 57.748 29.630 2.79 0.00 35.72 3.96
2186 2392 3.949842 AAGCAATTGAGGGAAAAGCTC 57.050 42.857 10.34 0.00 0.00 4.09
2200 2406 0.247736 AAGCTCGCTGAGGTACCTTG 59.752 55.000 17.53 13.29 39.62 3.61
2205 2411 2.363680 CTCGCTGAGGTACCTTGATGAT 59.636 50.000 17.53 0.00 0.00 2.45
2501 2712 5.657302 ACATATAGGCTAATCTCGTAAGGGG 59.343 44.000 0.00 0.00 39.46 4.79
2940 3151 7.719871 ACTGGTAGGGACATATATGTGATAC 57.280 40.000 22.93 18.82 41.95 2.24
2942 3153 7.178628 ACTGGTAGGGACATATATGTGATACAC 59.821 40.741 22.93 9.53 41.95 2.90
3067 3281 7.908601 AGTTTGTCGATTGTTTAAGTTCAAGTC 59.091 33.333 0.00 0.00 0.00 3.01
3084 3298 0.520404 GTCTGCGTTCCTACAGTCGA 59.480 55.000 0.00 0.00 35.37 4.20
3260 3480 6.639632 AATTTGTTGTAGTTCAGCACTCAT 57.360 33.333 0.00 0.00 37.02 2.90
3284 3516 6.939622 TGATTCATTCATGTGAGACACTAGT 58.060 36.000 0.00 0.00 35.11 2.57
3285 3517 7.389232 TGATTCATTCATGTGAGACACTAGTT 58.611 34.615 0.00 0.00 35.11 2.24
3286 3518 7.879677 TGATTCATTCATGTGAGACACTAGTTT 59.120 33.333 0.00 0.00 35.11 2.66
3287 3519 9.371136 GATTCATTCATGTGAGACACTAGTTTA 57.629 33.333 0.00 0.00 35.11 2.01
3288 3520 9.896645 ATTCATTCATGTGAGACACTAGTTTAT 57.103 29.630 0.00 0.00 35.11 1.40
3289 3521 9.725019 TTCATTCATGTGAGACACTAGTTTATT 57.275 29.630 0.00 0.00 35.11 1.40
3491 3723 4.646492 ACAGTTCCAAGCAAATCTCAGTTT 59.354 37.500 0.00 0.00 0.00 2.66
3492 3724 5.127682 ACAGTTCCAAGCAAATCTCAGTTTT 59.872 36.000 0.00 0.00 0.00 2.43
3493 3725 6.044682 CAGTTCCAAGCAAATCTCAGTTTTT 58.955 36.000 0.00 0.00 0.00 1.94
3979 4225 1.613255 CCAGGTGGTGGGATTGTACAC 60.613 57.143 0.00 0.00 43.63 2.90
4020 4267 1.197430 AGGCTCACTTCCTGAGGTGG 61.197 60.000 9.21 0.00 46.08 4.61
4132 4388 3.053470 TGGAATCTGGATTGGCATCTTCA 60.053 43.478 0.17 0.00 0.00 3.02
4306 4562 7.071069 TGATGTATATGCTGATCCAGAACTT 57.929 36.000 0.00 0.00 32.44 2.66
4410 4667 1.274167 CAATGCATGCCCTTTCTGTGT 59.726 47.619 16.68 0.00 0.00 3.72
4412 4669 2.284754 TGCATGCCCTTTCTGTGTTA 57.715 45.000 16.68 0.00 0.00 2.41
4527 4785 7.296628 AGATCAGTATTTCACTATGTCTCCC 57.703 40.000 0.00 0.00 34.98 4.30
4563 4821 4.344968 CCTTTTTGTCAAGAATGAAGGGGT 59.655 41.667 0.00 0.00 37.30 4.95
4633 4892 7.284518 ACAGTGTTTAAAACAACCGAAAATG 57.715 32.000 0.00 0.00 44.16 2.32
4667 4926 7.398829 TCAGCAACTATATTTTCCCTTGTACA 58.601 34.615 0.00 0.00 0.00 2.90
4718 4977 9.162764 GCATTTTCTCCAGTCTGTTTACTATAA 57.837 33.333 0.00 0.00 0.00 0.98
4747 5006 1.218047 CTTGGCGAAGGTGGATCGA 59.782 57.895 0.00 0.00 42.76 3.59
4749 5008 2.202892 GGCGAAGGTGGATCGACC 60.203 66.667 18.56 18.56 42.49 4.79
4963 5224 8.147704 TGTCTATCATTGCCGTTTTGAGATATA 58.852 33.333 0.00 0.00 0.00 0.86
4972 5233 6.425417 TGCCGTTTTGAGATATATTTATCGCA 59.575 34.615 5.69 5.69 41.19 5.10
5034 5295 6.226787 TGAAGAATCAGAGAAAGTGAGTTCC 58.773 40.000 0.00 0.00 0.00 3.62
5066 5327 3.535280 TGCTTGGTTGTTTCCCTTTTC 57.465 42.857 0.00 0.00 0.00 2.29
5092 5353 9.919348 CTTTTTACCAAAGTGAATTGTTGATTG 57.081 29.630 0.00 0.00 0.00 2.67
5135 5396 0.400594 GGTTTGAGCACCCCTACACT 59.599 55.000 0.00 0.00 0.00 3.55
5163 5424 4.080807 TCCTATTTTATGGCGAGGACACAA 60.081 41.667 0.00 0.00 31.25 3.33
5301 5562 3.304257 GCACTGAGAATGTGGAGTTTGTG 60.304 47.826 0.00 0.00 36.08 3.33
5417 5678 4.657814 ACATTCCTTATTCACCACCACT 57.342 40.909 0.00 0.00 0.00 4.00
5457 5718 8.877864 AAGATAGAGGATCAAGGTACTATCTG 57.122 38.462 0.00 0.00 42.76 2.90
5460 5721 3.898123 GAGGATCAAGGTACTATCTGGCA 59.102 47.826 0.00 0.00 38.49 4.92
5562 5823 1.479730 TGAGAGGAGCTACATGCAGTG 59.520 52.381 0.00 0.00 45.94 3.66
5819 6080 1.542915 GGGCTTCACGTACAGTACAGA 59.457 52.381 11.37 5.28 0.00 3.41
5820 6081 2.165845 GGGCTTCACGTACAGTACAGAT 59.834 50.000 11.37 0.00 0.00 2.90
5821 6082 3.179830 GGCTTCACGTACAGTACAGATG 58.820 50.000 11.37 10.44 0.00 2.90
5822 6083 3.367087 GGCTTCACGTACAGTACAGATGT 60.367 47.826 11.37 0.00 34.62 3.06
5823 6084 4.235360 GCTTCACGTACAGTACAGATGTT 58.765 43.478 11.37 0.00 32.02 2.71
5824 6085 4.090066 GCTTCACGTACAGTACAGATGTTG 59.910 45.833 11.37 5.01 32.02 3.33
5825 6086 4.168922 TCACGTACAGTACAGATGTTGG 57.831 45.455 11.37 0.00 32.02 3.77
5826 6087 3.822167 TCACGTACAGTACAGATGTTGGA 59.178 43.478 11.37 0.00 32.02 3.53
5840 6109 3.859411 TGTTGGACTTGTGTTTGGTTC 57.141 42.857 0.00 0.00 0.00 3.62
5917 6186 5.067283 GTCTTCAGCAAACCAACTTCCTTAA 59.933 40.000 0.00 0.00 0.00 1.85
5930 6199 2.178912 TCCTTAAGGCAAGTCCAACG 57.821 50.000 17.32 0.00 37.29 4.10
5944 6213 0.744414 CCAACGCGGATCACCAAGAT 60.744 55.000 12.47 0.00 40.48 2.40
5946 6215 0.744414 AACGCGGATCACCAAGATGG 60.744 55.000 12.47 0.00 45.02 3.51
5983 6254 2.403252 AGACAAATCCGGACATGTCC 57.597 50.000 32.37 31.59 42.39 4.02
5998 6270 2.095604 TGTCCGTGGATATGGATGGA 57.904 50.000 0.00 0.00 43.67 3.41
6003 6275 2.529632 CGTGGATATGGATGGAGGAGA 58.470 52.381 0.00 0.00 0.00 3.71
6005 6277 2.232452 GTGGATATGGATGGAGGAGACG 59.768 54.545 0.00 0.00 0.00 4.18
6008 6280 0.832135 TATGGATGGAGGAGACGGCC 60.832 60.000 0.00 0.00 0.00 6.13
6023 6295 1.685224 GGCCATCCAACCAGAGTCA 59.315 57.895 0.00 0.00 0.00 3.41
6033 6305 0.773644 ACCAGAGTCACCAAATGCCT 59.226 50.000 0.00 0.00 0.00 4.75
6036 6308 0.610232 AGAGTCACCAAATGCCTGCC 60.610 55.000 0.00 0.00 0.00 4.85
6038 6310 1.607467 GTCACCAAATGCCTGCCCT 60.607 57.895 0.00 0.00 0.00 5.19
6044 6316 0.901580 CAAATGCCTGCCCTTGGTCT 60.902 55.000 0.00 0.00 0.00 3.85
6046 6318 2.085343 AATGCCTGCCCTTGGTCTGT 62.085 55.000 0.00 0.00 0.00 3.41
6050 6322 1.298014 CTGCCCTTGGTCTGTCCTC 59.702 63.158 0.00 0.00 37.07 3.71
6053 6325 1.492993 GCCCTTGGTCTGTCCTCCTT 61.493 60.000 0.00 0.00 37.07 3.36
6081 6353 8.922931 TTTGACATGCATATATCAATACCACT 57.077 30.769 16.60 0.00 31.45 4.00
6131 6403 7.887996 ACATATGCGATCACAAAACAAAAAT 57.112 28.000 1.58 0.00 0.00 1.82
6135 6407 6.841443 TGCGATCACAAAACAAAAATCATT 57.159 29.167 0.00 0.00 0.00 2.57
6136 6408 7.244166 TGCGATCACAAAACAAAAATCATTT 57.756 28.000 0.00 0.00 0.00 2.32
6161 6433 7.792925 TGATATTCAATACGCTTTTACATCCG 58.207 34.615 0.00 0.00 0.00 4.18
6178 6450 2.257207 TCCGACTGATCCCAAAAGTCT 58.743 47.619 8.12 0.00 38.53 3.24
6180 6452 2.028112 CCGACTGATCCCAAAAGTCTGA 60.028 50.000 8.12 0.00 38.53 3.27
6185 6457 5.006386 ACTGATCCCAAAAGTCTGATTGTC 58.994 41.667 0.00 0.00 0.00 3.18
6186 6458 4.335416 TGATCCCAAAAGTCTGATTGTCC 58.665 43.478 0.00 0.00 0.00 4.02
6187 6459 3.874383 TCCCAAAAGTCTGATTGTCCA 57.126 42.857 0.00 0.00 0.00 4.02
6208 6487 1.374947 CCAAAGACGCCCTCTCCAA 59.625 57.895 0.00 0.00 0.00 3.53
6209 6488 0.035056 CCAAAGACGCCCTCTCCAAT 60.035 55.000 0.00 0.00 0.00 3.16
6217 6496 1.749033 CCCTCTCCAATCCGGCTAC 59.251 63.158 0.00 0.00 33.14 3.58
6218 6497 1.364171 CCTCTCCAATCCGGCTACG 59.636 63.158 0.00 0.00 40.55 3.51
6228 6507 4.147322 CGGCTACGCGTGGCAAAG 62.147 66.667 41.33 29.44 38.96 2.77
6258 6537 0.400213 TCGACACCCTCAAATTGCCT 59.600 50.000 0.00 0.00 0.00 4.75
6259 6538 0.523072 CGACACCCTCAAATTGCCTG 59.477 55.000 0.00 0.00 0.00 4.85
6299 6585 2.166664 AGGCTAGGACAATCTTCGTCAC 59.833 50.000 0.00 0.00 34.97 3.67
6309 6595 4.081476 ACAATCTTCGTCACATCAGGATCA 60.081 41.667 0.00 0.00 0.00 2.92
6333 6619 8.081633 TCATAATCCAACATCTTCACAAACAAC 58.918 33.333 0.00 0.00 0.00 3.32
6361 6647 3.149196 GAGTCATTGGAAGCAACCTTGA 58.851 45.455 1.22 2.25 0.00 3.02
6395 6699 7.487822 TCTTCTCTTGTATCTCCATGAACTT 57.512 36.000 0.00 0.00 0.00 2.66
6404 6708 3.686016 TCTCCATGAACTTGCTAAACCC 58.314 45.455 0.00 0.00 0.00 4.11
6433 6737 3.306364 CGTCTTTGACTCCTTCACCTCAT 60.306 47.826 0.00 0.00 32.26 2.90
6441 6745 0.962356 CCTTCACCTCATGGCGCTTT 60.962 55.000 7.64 0.00 36.63 3.51
6455 6759 1.661112 GCGCTTTACACATGTCTCCTC 59.339 52.381 0.00 0.00 0.00 3.71
6456 6760 2.271800 CGCTTTACACATGTCTCCTCC 58.728 52.381 0.00 0.00 0.00 4.30
6457 6761 2.093973 CGCTTTACACATGTCTCCTCCT 60.094 50.000 0.00 0.00 0.00 3.69
6462 6766 1.971357 ACACATGTCTCCTCCTTCGTT 59.029 47.619 0.00 0.00 0.00 3.85
6474 6778 3.384789 CCTCCTTCGTTATGATGACCTCA 59.615 47.826 0.00 0.00 38.53 3.86
6484 6788 3.319137 TGATGACCTCAAACTTCTCCG 57.681 47.619 0.00 0.00 0.00 4.63
6489 6793 3.071023 TGACCTCAAACTTCTCCGTCATT 59.929 43.478 0.00 0.00 0.00 2.57
6495 6799 5.123227 TCAAACTTCTCCGTCATTTTGTCT 58.877 37.500 0.00 0.00 0.00 3.41
6496 6800 6.285224 TCAAACTTCTCCGTCATTTTGTCTA 58.715 36.000 0.00 0.00 0.00 2.59
6497 6801 6.934645 TCAAACTTCTCCGTCATTTTGTCTAT 59.065 34.615 0.00 0.00 0.00 1.98
6510 6814 1.007154 GTCTATCGCCCCTTCTCGC 60.007 63.158 0.00 0.00 0.00 5.03
6519 6823 1.486211 CCCCTTCTCGCTTCTCCTTA 58.514 55.000 0.00 0.00 0.00 2.69
6520 6824 1.137282 CCCCTTCTCGCTTCTCCTTAC 59.863 57.143 0.00 0.00 0.00 2.34
6521 6825 1.137282 CCCTTCTCGCTTCTCCTTACC 59.863 57.143 0.00 0.00 0.00 2.85
6522 6826 1.137282 CCTTCTCGCTTCTCCTTACCC 59.863 57.143 0.00 0.00 0.00 3.69
6523 6827 0.815734 TTCTCGCTTCTCCTTACCCG 59.184 55.000 0.00 0.00 0.00 5.28
6524 6828 0.323178 TCTCGCTTCTCCTTACCCGT 60.323 55.000 0.00 0.00 0.00 5.28
6525 6829 0.531200 CTCGCTTCTCCTTACCCGTT 59.469 55.000 0.00 0.00 0.00 4.44
6526 6830 0.529378 TCGCTTCTCCTTACCCGTTC 59.471 55.000 0.00 0.00 0.00 3.95
6527 6831 0.459759 CGCTTCTCCTTACCCGTTCC 60.460 60.000 0.00 0.00 0.00 3.62
6528 6832 0.107800 GCTTCTCCTTACCCGTTCCC 60.108 60.000 0.00 0.00 0.00 3.97
6529 6833 1.272807 CTTCTCCTTACCCGTTCCCA 58.727 55.000 0.00 0.00 0.00 4.37
6530 6834 1.626825 CTTCTCCTTACCCGTTCCCAA 59.373 52.381 0.00 0.00 0.00 4.12
6531 6835 1.961133 TCTCCTTACCCGTTCCCAAT 58.039 50.000 0.00 0.00 0.00 3.16
6532 6836 1.835531 TCTCCTTACCCGTTCCCAATC 59.164 52.381 0.00 0.00 0.00 2.67
6533 6837 1.557832 CTCCTTACCCGTTCCCAATCA 59.442 52.381 0.00 0.00 0.00 2.57
6534 6838 1.279846 TCCTTACCCGTTCCCAATCAC 59.720 52.381 0.00 0.00 0.00 3.06
6535 6839 1.680860 CCTTACCCGTTCCCAATCACC 60.681 57.143 0.00 0.00 0.00 4.02
6536 6840 1.280998 CTTACCCGTTCCCAATCACCT 59.719 52.381 0.00 0.00 0.00 4.00
6537 6841 1.364269 TACCCGTTCCCAATCACCTT 58.636 50.000 0.00 0.00 0.00 3.50
6538 6842 1.364269 ACCCGTTCCCAATCACCTTA 58.636 50.000 0.00 0.00 0.00 2.69
6539 6843 1.920351 ACCCGTTCCCAATCACCTTAT 59.080 47.619 0.00 0.00 0.00 1.73
6540 6844 2.310647 ACCCGTTCCCAATCACCTTATT 59.689 45.455 0.00 0.00 0.00 1.40
6541 6845 3.524380 ACCCGTTCCCAATCACCTTATTA 59.476 43.478 0.00 0.00 0.00 0.98
6542 6846 4.134563 CCCGTTCCCAATCACCTTATTAG 58.865 47.826 0.00 0.00 0.00 1.73
6544 6848 3.564225 CGTTCCCAATCACCTTATTAGGC 59.436 47.826 0.00 0.00 46.22 3.93
6545 6849 4.532834 GTTCCCAATCACCTTATTAGGCA 58.467 43.478 0.00 0.00 46.22 4.75
6546 6850 4.437682 TCCCAATCACCTTATTAGGCAG 57.562 45.455 0.00 0.00 46.22 4.85
6547 6851 4.044308 TCCCAATCACCTTATTAGGCAGA 58.956 43.478 0.00 0.00 46.22 4.26
6548 6852 4.103153 TCCCAATCACCTTATTAGGCAGAG 59.897 45.833 0.00 0.00 46.22 3.35
6549 6853 3.817647 CCAATCACCTTATTAGGCAGAGC 59.182 47.826 0.00 0.00 46.22 4.09
6550 6854 4.454678 CAATCACCTTATTAGGCAGAGCA 58.545 43.478 0.00 0.00 46.22 4.26
6551 6855 4.778213 ATCACCTTATTAGGCAGAGCAA 57.222 40.909 0.00 0.00 46.22 3.91
6552 6856 4.142609 TCACCTTATTAGGCAGAGCAAG 57.857 45.455 0.00 0.00 46.22 4.01
6553 6857 2.615912 CACCTTATTAGGCAGAGCAAGC 59.384 50.000 0.00 0.00 46.22 4.01
6559 6863 2.354343 GGCAGAGCAAGCCCTTCT 59.646 61.111 2.95 0.00 46.50 2.85
6560 6864 1.303970 GGCAGAGCAAGCCCTTCTT 60.304 57.895 2.95 0.00 46.50 2.52
6569 6873 2.813061 CAAGCCCTTCTTGTGTTGTTG 58.187 47.619 0.00 0.00 45.48 3.33
6570 6874 1.402787 AGCCCTTCTTGTGTTGTTGG 58.597 50.000 0.00 0.00 0.00 3.77
6571 6875 1.064017 AGCCCTTCTTGTGTTGTTGGA 60.064 47.619 0.00 0.00 0.00 3.53
6572 6876 1.963515 GCCCTTCTTGTGTTGTTGGAT 59.036 47.619 0.00 0.00 0.00 3.41
6573 6877 2.029918 GCCCTTCTTGTGTTGTTGGATC 60.030 50.000 0.00 0.00 0.00 3.36
6574 6878 3.221771 CCCTTCTTGTGTTGTTGGATCA 58.778 45.455 0.00 0.00 0.00 2.92
6575 6879 3.828451 CCCTTCTTGTGTTGTTGGATCAT 59.172 43.478 0.00 0.00 0.00 2.45
6576 6880 4.082571 CCCTTCTTGTGTTGTTGGATCATC 60.083 45.833 0.00 0.00 0.00 2.92
6577 6881 4.520111 CCTTCTTGTGTTGTTGGATCATCA 59.480 41.667 0.00 0.00 0.00 3.07
6578 6882 5.437289 TTCTTGTGTTGTTGGATCATCAC 57.563 39.130 0.00 0.00 38.06 3.06
6579 6883 3.820467 TCTTGTGTTGTTGGATCATCACC 59.180 43.478 0.00 0.00 37.28 4.02
6580 6884 3.507162 TGTGTTGTTGGATCATCACCT 57.493 42.857 0.00 0.00 37.28 4.00
6581 6885 3.831323 TGTGTTGTTGGATCATCACCTT 58.169 40.909 0.00 0.00 37.28 3.50
6582 6886 4.979335 TGTGTTGTTGGATCATCACCTTA 58.021 39.130 0.00 0.00 37.28 2.69
6583 6887 5.569355 TGTGTTGTTGGATCATCACCTTAT 58.431 37.500 0.00 0.00 37.28 1.73
6584 6888 6.009589 TGTGTTGTTGGATCATCACCTTATT 58.990 36.000 0.00 0.00 37.28 1.40
6585 6889 6.150976 TGTGTTGTTGGATCATCACCTTATTC 59.849 38.462 0.00 0.00 37.28 1.75
6586 6890 6.150976 GTGTTGTTGGATCATCACCTTATTCA 59.849 38.462 0.00 0.00 34.13 2.57
6587 6891 6.891361 TGTTGTTGGATCATCACCTTATTCAT 59.109 34.615 0.00 0.00 0.00 2.57
6588 6892 7.396907 TGTTGTTGGATCATCACCTTATTCATT 59.603 33.333 0.00 0.00 0.00 2.57
6589 6893 7.337480 TGTTGGATCATCACCTTATTCATTG 57.663 36.000 0.00 0.00 0.00 2.82
6590 6894 7.118060 TGTTGGATCATCACCTTATTCATTGA 58.882 34.615 0.00 0.00 0.00 2.57
6591 6895 7.283807 TGTTGGATCATCACCTTATTCATTGAG 59.716 37.037 0.00 0.00 0.00 3.02
6592 6896 5.766670 TGGATCATCACCTTATTCATTGAGC 59.233 40.000 0.00 0.00 0.00 4.26
6593 6897 5.766670 GGATCATCACCTTATTCATTGAGCA 59.233 40.000 0.00 0.00 0.00 4.26
6594 6898 6.293845 GGATCATCACCTTATTCATTGAGCAC 60.294 42.308 0.00 0.00 0.00 4.40
6595 6899 4.571984 TCATCACCTTATTCATTGAGCACG 59.428 41.667 0.00 0.00 0.00 5.34
6596 6900 4.200838 TCACCTTATTCATTGAGCACGA 57.799 40.909 0.00 0.00 0.00 4.35
6597 6901 3.932710 TCACCTTATTCATTGAGCACGAC 59.067 43.478 0.00 0.00 0.00 4.34
6598 6902 2.930040 ACCTTATTCATTGAGCACGACG 59.070 45.455 0.00 0.00 0.00 5.12
6599 6903 2.285220 CCTTATTCATTGAGCACGACGG 59.715 50.000 0.00 0.00 0.00 4.79
6600 6904 2.665649 TATTCATTGAGCACGACGGT 57.334 45.000 0.00 0.00 0.00 4.83
6601 6905 1.359848 ATTCATTGAGCACGACGGTC 58.640 50.000 0.00 0.00 42.75 4.79
6602 6906 0.317160 TTCATTGAGCACGACGGTCT 59.683 50.000 6.57 0.00 42.88 3.85
6603 6907 0.317160 TCATTGAGCACGACGGTCTT 59.683 50.000 6.57 0.00 42.88 3.01
6604 6908 0.439985 CATTGAGCACGACGGTCTTG 59.560 55.000 10.02 10.02 42.88 3.02
6605 6909 0.317160 ATTGAGCACGACGGTCTTGA 59.683 50.000 17.66 0.00 42.88 3.02
6606 6910 0.596600 TTGAGCACGACGGTCTTGAC 60.597 55.000 17.66 10.87 42.88 3.18
6607 6911 2.050351 AGCACGACGGTCTTGACG 60.050 61.111 17.66 1.79 37.36 4.35
6608 6912 2.050714 GCACGACGGTCTTGACGA 60.051 61.111 17.66 0.00 34.93 4.20
6609 6913 1.659335 GCACGACGGTCTTGACGAA 60.659 57.895 17.66 0.00 34.93 3.85
6610 6914 1.210545 GCACGACGGTCTTGACGAAA 61.211 55.000 17.66 0.00 34.93 3.46
6611 6915 1.415374 CACGACGGTCTTGACGAAAT 58.585 50.000 8.81 0.00 34.93 2.17
6612 6916 1.385743 CACGACGGTCTTGACGAAATC 59.614 52.381 8.81 0.00 34.93 2.17
6613 6917 0.633733 CGACGGTCTTGACGAAATCG 59.366 55.000 6.57 0.48 46.33 3.34
6614 6918 0.989890 GACGGTCTTGACGAAATCGG 59.010 55.000 7.81 0.00 44.95 4.18
6615 6919 0.599558 ACGGTCTTGACGAAATCGGA 59.400 50.000 7.81 0.00 44.95 4.55
6616 6920 1.000060 ACGGTCTTGACGAAATCGGAA 60.000 47.619 7.81 0.00 44.95 4.30
6617 6921 2.063266 CGGTCTTGACGAAATCGGAAA 58.937 47.619 7.81 0.58 44.95 3.13
6618 6922 2.159881 CGGTCTTGACGAAATCGGAAAC 60.160 50.000 7.81 0.00 44.95 2.78
6619 6923 2.803956 GGTCTTGACGAAATCGGAAACA 59.196 45.455 7.81 0.00 44.95 2.83
6620 6924 3.249080 GGTCTTGACGAAATCGGAAACAA 59.751 43.478 7.81 7.15 44.95 2.83
6621 6925 4.260866 GGTCTTGACGAAATCGGAAACAAA 60.261 41.667 7.81 0.00 44.95 2.83
6622 6926 4.904154 GTCTTGACGAAATCGGAAACAAAG 59.096 41.667 7.81 2.42 44.95 2.77
6623 6927 3.889196 TGACGAAATCGGAAACAAAGG 57.111 42.857 7.81 0.00 44.95 3.11
6624 6928 2.031508 TGACGAAATCGGAAACAAAGGC 60.032 45.455 7.81 0.00 44.95 4.35
6625 6929 1.950909 ACGAAATCGGAAACAAAGGCA 59.049 42.857 7.81 0.00 44.95 4.75
6626 6930 2.287368 ACGAAATCGGAAACAAAGGCAC 60.287 45.455 7.81 0.00 44.95 5.01
6627 6931 2.672714 GAAATCGGAAACAAAGGCACC 58.327 47.619 0.00 0.00 0.00 5.01
6628 6932 0.596082 AATCGGAAACAAAGGCACCG 59.404 50.000 0.00 0.00 44.09 4.94
6629 6933 1.862602 ATCGGAAACAAAGGCACCGC 61.863 55.000 0.00 0.00 42.73 5.68
6630 6934 2.840066 CGGAAACAAAGGCACCGCA 61.840 57.895 0.00 0.00 37.32 5.69
6631 6935 1.299850 GGAAACAAAGGCACCGCAC 60.300 57.895 0.00 0.00 0.00 5.34
6632 6936 1.435515 GAAACAAAGGCACCGCACA 59.564 52.632 0.00 0.00 0.00 4.57
6633 6937 0.179124 GAAACAAAGGCACCGCACAA 60.179 50.000 0.00 0.00 0.00 3.33
6634 6938 0.463620 AAACAAAGGCACCGCACAAT 59.536 45.000 0.00 0.00 0.00 2.71
6635 6939 1.323412 AACAAAGGCACCGCACAATA 58.677 45.000 0.00 0.00 0.00 1.90
6636 6940 0.881118 ACAAAGGCACCGCACAATAG 59.119 50.000 0.00 0.00 0.00 1.73
6637 6941 0.881118 CAAAGGCACCGCACAATAGT 59.119 50.000 0.00 0.00 0.00 2.12
6638 6942 1.135689 CAAAGGCACCGCACAATAGTC 60.136 52.381 0.00 0.00 0.00 2.59
6639 6943 0.676782 AAGGCACCGCACAATAGTCC 60.677 55.000 0.00 0.00 0.00 3.85
6640 6944 1.376683 GGCACCGCACAATAGTCCA 60.377 57.895 0.00 0.00 0.00 4.02
6641 6945 1.644786 GGCACCGCACAATAGTCCAC 61.645 60.000 0.00 0.00 0.00 4.02
6642 6946 1.644786 GCACCGCACAATAGTCCACC 61.645 60.000 0.00 0.00 0.00 4.61
6643 6947 0.321210 CACCGCACAATAGTCCACCA 60.321 55.000 0.00 0.00 0.00 4.17
6644 6948 0.321298 ACCGCACAATAGTCCACCAC 60.321 55.000 0.00 0.00 0.00 4.16
6645 6949 0.321210 CCGCACAATAGTCCACCACA 60.321 55.000 0.00 0.00 0.00 4.17
6646 6950 1.678728 CCGCACAATAGTCCACCACAT 60.679 52.381 0.00 0.00 0.00 3.21
6647 6951 2.083774 CGCACAATAGTCCACCACATT 58.916 47.619 0.00 0.00 0.00 2.71
6648 6952 2.487762 CGCACAATAGTCCACCACATTT 59.512 45.455 0.00 0.00 0.00 2.32
6649 6953 3.687212 CGCACAATAGTCCACCACATTTA 59.313 43.478 0.00 0.00 0.00 1.40
6650 6954 4.436852 CGCACAATAGTCCACCACATTTAC 60.437 45.833 0.00 0.00 0.00 2.01
6651 6955 4.142469 GCACAATAGTCCACCACATTTACC 60.142 45.833 0.00 0.00 0.00 2.85
6652 6956 4.094294 CACAATAGTCCACCACATTTACCG 59.906 45.833 0.00 0.00 0.00 4.02
6653 6957 4.020039 ACAATAGTCCACCACATTTACCGA 60.020 41.667 0.00 0.00 0.00 4.69
6654 6958 2.762535 AGTCCACCACATTTACCGAG 57.237 50.000 0.00 0.00 0.00 4.63
6655 6959 1.278127 AGTCCACCACATTTACCGAGG 59.722 52.381 0.00 0.00 0.00 4.63
6656 6960 0.035820 TCCACCACATTTACCGAGGC 60.036 55.000 0.00 0.00 0.00 4.70
6657 6961 0.322098 CCACCACATTTACCGAGGCA 60.322 55.000 0.00 0.00 0.00 4.75
6658 6962 0.802494 CACCACATTTACCGAGGCAC 59.198 55.000 0.00 0.00 0.00 5.01
6674 6978 4.464069 AGGCACTCTGTTCTCACTAATC 57.536 45.455 0.00 0.00 0.00 1.75
6675 6979 3.834813 AGGCACTCTGTTCTCACTAATCA 59.165 43.478 0.00 0.00 0.00 2.57
6676 6980 4.469227 AGGCACTCTGTTCTCACTAATCAT 59.531 41.667 0.00 0.00 0.00 2.45
6677 6981 4.808364 GGCACTCTGTTCTCACTAATCATC 59.192 45.833 0.00 0.00 0.00 2.92
6678 6982 4.502282 GCACTCTGTTCTCACTAATCATCG 59.498 45.833 0.00 0.00 0.00 3.84
6679 6983 5.645624 CACTCTGTTCTCACTAATCATCGT 58.354 41.667 0.00 0.00 0.00 3.73
6680 6984 5.741510 CACTCTGTTCTCACTAATCATCGTC 59.258 44.000 0.00 0.00 0.00 4.20
6681 6985 5.416013 ACTCTGTTCTCACTAATCATCGTCA 59.584 40.000 0.00 0.00 0.00 4.35
6682 6986 6.071896 ACTCTGTTCTCACTAATCATCGTCAA 60.072 38.462 0.00 0.00 0.00 3.18
6683 6987 6.093404 TCTGTTCTCACTAATCATCGTCAAC 58.907 40.000 0.00 0.00 0.00 3.18
6684 6988 5.168569 TGTTCTCACTAATCATCGTCAACC 58.831 41.667 0.00 0.00 0.00 3.77
6685 6989 5.168569 GTTCTCACTAATCATCGTCAACCA 58.831 41.667 0.00 0.00 0.00 3.67
6686 6990 5.598416 TCTCACTAATCATCGTCAACCAT 57.402 39.130 0.00 0.00 0.00 3.55
6687 6991 5.351458 TCTCACTAATCATCGTCAACCATG 58.649 41.667 0.00 0.00 0.00 3.66
6688 6992 3.871006 TCACTAATCATCGTCAACCATGC 59.129 43.478 0.00 0.00 0.00 4.06
6689 6993 3.002656 CACTAATCATCGTCAACCATGCC 59.997 47.826 0.00 0.00 0.00 4.40
6690 6994 2.127271 AATCATCGTCAACCATGCCA 57.873 45.000 0.00 0.00 0.00 4.92
6691 6995 2.127271 ATCATCGTCAACCATGCCAA 57.873 45.000 0.00 0.00 0.00 4.52
6692 6996 1.902938 TCATCGTCAACCATGCCAAA 58.097 45.000 0.00 0.00 0.00 3.28
6693 6997 2.445427 TCATCGTCAACCATGCCAAAT 58.555 42.857 0.00 0.00 0.00 2.32
6694 6998 2.164017 TCATCGTCAACCATGCCAAATG 59.836 45.455 0.00 0.00 0.00 2.32
6695 6999 1.902938 TCGTCAACCATGCCAAATGA 58.097 45.000 0.00 0.00 0.00 2.57
6696 7000 2.234143 TCGTCAACCATGCCAAATGAA 58.766 42.857 0.00 0.00 0.00 2.57
6697 7001 2.030363 TCGTCAACCATGCCAAATGAAC 60.030 45.455 0.00 0.00 0.00 3.18
6698 7002 2.327568 GTCAACCATGCCAAATGAACG 58.672 47.619 0.00 0.00 0.00 3.95
6699 7003 1.070038 CAACCATGCCAAATGAACGC 58.930 50.000 0.00 0.00 0.00 4.84
6700 7004 0.037419 AACCATGCCAAATGAACGCC 60.037 50.000 0.00 0.00 0.00 5.68
6701 7005 1.184322 ACCATGCCAAATGAACGCCA 61.184 50.000 0.00 0.00 0.00 5.69
6702 7006 0.176219 CCATGCCAAATGAACGCCAT 59.824 50.000 0.00 0.00 36.99 4.40
6703 7007 1.282817 CATGCCAAATGAACGCCATG 58.717 50.000 0.00 0.00 35.24 3.66
6704 7008 0.896923 ATGCCAAATGAACGCCATGT 59.103 45.000 0.00 0.00 35.24 3.21
6705 7009 0.678395 TGCCAAATGAACGCCATGTT 59.322 45.000 0.00 0.00 45.61 2.71
6706 7010 1.070038 GCCAAATGAACGCCATGTTG 58.930 50.000 0.00 0.00 42.09 3.33
6707 7011 1.605202 GCCAAATGAACGCCATGTTGT 60.605 47.619 0.00 0.00 42.09 3.32
6708 7012 2.060284 CCAAATGAACGCCATGTTGTG 58.940 47.619 0.00 0.00 42.09 3.33
6709 7013 1.456544 CAAATGAACGCCATGTTGTGC 59.543 47.619 0.00 0.00 42.09 4.57
6710 7014 0.038343 AATGAACGCCATGTTGTGCC 60.038 50.000 0.00 0.00 42.09 5.01
6711 7015 1.876497 ATGAACGCCATGTTGTGCCC 61.876 55.000 0.00 0.00 42.09 5.36
6712 7016 3.609214 GAACGCCATGTTGTGCCCG 62.609 63.158 0.00 0.00 42.09 6.13
6713 7017 4.634703 ACGCCATGTTGTGCCCGA 62.635 61.111 0.00 0.00 0.00 5.14
6714 7018 4.101790 CGCCATGTTGTGCCCGAC 62.102 66.667 0.00 0.00 0.00 4.79
6715 7019 2.983030 GCCATGTTGTGCCCGACA 60.983 61.111 0.00 0.00 39.31 4.35
6716 7020 2.342650 GCCATGTTGTGCCCGACAT 61.343 57.895 0.00 0.00 44.92 3.06
6717 7021 1.876497 GCCATGTTGTGCCCGACATT 61.876 55.000 0.00 0.00 42.00 2.71
6718 7022 0.109179 CCATGTTGTGCCCGACATTG 60.109 55.000 0.00 0.00 42.00 2.82
6719 7023 0.597568 CATGTTGTGCCCGACATTGT 59.402 50.000 0.00 0.00 42.00 2.71
6720 7024 1.809547 CATGTTGTGCCCGACATTGTA 59.190 47.619 0.00 0.00 42.00 2.41
6721 7025 1.518325 TGTTGTGCCCGACATTGTAG 58.482 50.000 0.00 0.00 33.40 2.74
6722 7026 1.202710 TGTTGTGCCCGACATTGTAGT 60.203 47.619 0.00 0.00 33.40 2.73
6723 7027 1.463444 GTTGTGCCCGACATTGTAGTC 59.537 52.381 0.00 0.00 33.40 2.59
6731 7035 0.577269 GACATTGTAGTCGGCATCGC 59.423 55.000 0.00 0.00 36.13 4.58
6732 7036 0.810031 ACATTGTAGTCGGCATCGCC 60.810 55.000 0.00 0.00 46.75 5.54
6748 7052 3.322466 CCCAGTCGGCCTCCTTGT 61.322 66.667 0.00 0.00 0.00 3.16
6749 7053 2.266055 CCAGTCGGCCTCCTTGTC 59.734 66.667 0.00 0.00 0.00 3.18
6750 7054 2.266055 CAGTCGGCCTCCTTGTCC 59.734 66.667 0.00 0.00 0.00 4.02
6751 7055 3.382832 AGTCGGCCTCCTTGTCCG 61.383 66.667 0.00 0.00 44.16 4.79
6752 7056 3.692406 GTCGGCCTCCTTGTCCGT 61.692 66.667 0.00 0.00 43.35 4.69
6753 7057 3.691342 TCGGCCTCCTTGTCCGTG 61.691 66.667 0.00 0.00 43.35 4.94
6754 7058 4.760047 CGGCCTCCTTGTCCGTGG 62.760 72.222 0.00 0.00 38.47 4.94
6757 7061 3.322466 CCTCCTTGTCCGTGGCCT 61.322 66.667 3.32 0.00 0.00 5.19
6758 7062 1.987855 CCTCCTTGTCCGTGGCCTA 60.988 63.158 3.32 0.00 0.00 3.93
6759 7063 1.218316 CTCCTTGTCCGTGGCCTAC 59.782 63.158 3.32 0.00 0.00 3.18
6760 7064 1.534476 TCCTTGTCCGTGGCCTACA 60.534 57.895 3.32 0.00 0.00 2.74
6761 7065 1.375523 CCTTGTCCGTGGCCTACAC 60.376 63.158 3.32 0.00 46.78 2.90
6768 7072 2.434359 GTGGCCTACACTCACGCC 60.434 66.667 3.32 0.00 46.72 5.68
6769 7073 4.063967 TGGCCTACACTCACGCCG 62.064 66.667 3.32 0.00 44.71 6.46
6772 7076 3.760035 CCTACACTCACGCCGCCT 61.760 66.667 0.00 0.00 0.00 5.52
6773 7077 2.261671 CTACACTCACGCCGCCTT 59.738 61.111 0.00 0.00 0.00 4.35
6774 7078 1.509463 CTACACTCACGCCGCCTTA 59.491 57.895 0.00 0.00 0.00 2.69
6775 7079 0.108992 CTACACTCACGCCGCCTTAA 60.109 55.000 0.00 0.00 0.00 1.85
6776 7080 0.533491 TACACTCACGCCGCCTTAAT 59.467 50.000 0.00 0.00 0.00 1.40
6777 7081 0.739813 ACACTCACGCCGCCTTAATC 60.740 55.000 0.00 0.00 0.00 1.75
6778 7082 0.739462 CACTCACGCCGCCTTAATCA 60.739 55.000 0.00 0.00 0.00 2.57
6779 7083 0.739813 ACTCACGCCGCCTTAATCAC 60.740 55.000 0.00 0.00 0.00 3.06
6780 7084 0.460284 CTCACGCCGCCTTAATCACT 60.460 55.000 0.00 0.00 0.00 3.41
6781 7085 0.036765 TCACGCCGCCTTAATCACTT 60.037 50.000 0.00 0.00 0.00 3.16
6782 7086 0.802494 CACGCCGCCTTAATCACTTT 59.198 50.000 0.00 0.00 0.00 2.66
6783 7087 0.802494 ACGCCGCCTTAATCACTTTG 59.198 50.000 0.00 0.00 0.00 2.77
6784 7088 0.523335 CGCCGCCTTAATCACTTTGC 60.523 55.000 0.00 0.00 0.00 3.68
6785 7089 0.811281 GCCGCCTTAATCACTTTGCT 59.189 50.000 0.00 0.00 0.00 3.91
6786 7090 1.202188 GCCGCCTTAATCACTTTGCTC 60.202 52.381 0.00 0.00 0.00 4.26
6787 7091 1.062587 CCGCCTTAATCACTTTGCTCG 59.937 52.381 0.00 0.00 0.00 5.03
6788 7092 1.732259 CGCCTTAATCACTTTGCTCGT 59.268 47.619 0.00 0.00 0.00 4.18
6789 7093 2.927477 CGCCTTAATCACTTTGCTCGTA 59.073 45.455 0.00 0.00 0.00 3.43
6790 7094 3.555956 CGCCTTAATCACTTTGCTCGTAT 59.444 43.478 0.00 0.00 0.00 3.06
6791 7095 4.550831 CGCCTTAATCACTTTGCTCGTATG 60.551 45.833 0.00 0.00 0.00 2.39
6792 7096 4.786609 GCCTTAATCACTTTGCTCGTATGC 60.787 45.833 0.00 0.00 0.00 3.14
6793 7097 4.332543 CCTTAATCACTTTGCTCGTATGCA 59.667 41.667 0.00 0.00 41.65 3.96
6800 7104 2.830772 TTGCTCGTATGCAATCAAGC 57.169 45.000 0.00 0.00 46.43 4.01
6801 7105 2.083002 TTGCTCGTATGCAATCAAGCA 58.917 42.857 11.69 11.69 46.43 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.223582 CAGCGACTCATGTTACAGATAATTTCT 59.776 37.037 0.00 0.00 33.90 2.52
1 2 7.010552 ACAGCGACTCATGTTACAGATAATTTC 59.989 37.037 0.00 0.00 0.00 2.17
2 3 6.818644 ACAGCGACTCATGTTACAGATAATTT 59.181 34.615 0.00 0.00 0.00 1.82
61 62 7.572724 GCAGTACATCTGGATCATGAAATTAGC 60.573 40.741 0.00 0.00 43.78 3.09
119 120 2.479275 CTGCAGTGAATCGCTGGATATG 59.521 50.000 23.22 7.22 41.08 1.78
169 170 2.940514 TGGTCTCCATTCCTCCAGTA 57.059 50.000 0.00 0.00 0.00 2.74
304 305 2.031157 ACAAAAACTGTACTGCCGCATC 60.031 45.455 0.00 0.00 36.10 3.91
310 311 6.944557 ACTTTTGAACAAAAACTGTACTGC 57.055 33.333 12.61 0.00 39.49 4.40
448 449 3.134458 GTGTTGCTTCTGTTCTGTAGCT 58.866 45.455 0.00 0.00 34.77 3.32
451 452 6.449635 AAATTGTGTTGCTTCTGTTCTGTA 57.550 33.333 0.00 0.00 0.00 2.74
472 473 2.667481 CGAACCCTACGCGACATAAAAA 59.333 45.455 15.93 0.00 0.00 1.94
497 499 1.469703 CTGGCGAACATCAATGCTCAA 59.530 47.619 0.00 0.00 0.00 3.02
522 524 8.044908 TCGCAGTAGGAATAAACCTCTAATTTT 58.955 33.333 0.00 0.00 41.00 1.82
525 527 6.726490 TCGCAGTAGGAATAAACCTCTAAT 57.274 37.500 0.00 0.00 41.00 1.73
556 558 0.647410 CTAGCGTGACATTCGGCAAG 59.353 55.000 0.00 0.00 0.00 4.01
561 564 4.102649 TCACAATACTAGCGTGACATTCG 58.897 43.478 0.00 0.00 34.83 3.34
577 580 4.080526 GGAGGTATTACCACTGGTCACAAT 60.081 45.833 15.19 1.99 41.95 2.71
587 590 6.105397 TCCGATAAATGGAGGTATTACCAC 57.895 41.667 15.19 8.59 41.95 4.16
608 612 3.493767 AAGGAAGGTTCTGTGTTCTCC 57.506 47.619 0.00 0.00 0.00 3.71
622 626 6.978343 TGGTATCGTAAATCACAAAGGAAG 57.022 37.500 0.00 0.00 0.00 3.46
664 677 2.032550 CACACTCCAGCTGACAAACAAG 59.967 50.000 17.39 3.33 0.00 3.16
730 799 7.618502 TTTCAGCTCGGCAAATACTTATTTA 57.381 32.000 0.00 0.00 34.36 1.40
732 801 6.699575 ATTTCAGCTCGGCAAATACTTATT 57.300 33.333 0.00 0.00 0.00 1.40
734 803 6.257849 CACTATTTCAGCTCGGCAAATACTTA 59.742 38.462 0.00 0.00 0.00 2.24
735 804 5.065218 CACTATTTCAGCTCGGCAAATACTT 59.935 40.000 0.00 0.00 0.00 2.24
736 805 4.572389 CACTATTTCAGCTCGGCAAATACT 59.428 41.667 0.00 0.00 0.00 2.12
737 806 4.260784 CCACTATTTCAGCTCGGCAAATAC 60.261 45.833 0.00 0.00 0.00 1.89
739 808 2.684881 CCACTATTTCAGCTCGGCAAAT 59.315 45.455 0.00 0.00 0.00 2.32
740 809 2.083774 CCACTATTTCAGCTCGGCAAA 58.916 47.619 0.00 0.00 0.00 3.68
743 812 1.739067 AACCACTATTTCAGCTCGGC 58.261 50.000 0.00 0.00 0.00 5.54
745 814 5.411781 ACTCTTAACCACTATTTCAGCTCG 58.588 41.667 0.00 0.00 0.00 5.03
748 817 6.874134 TCTCAACTCTTAACCACTATTTCAGC 59.126 38.462 0.00 0.00 0.00 4.26
757 826 9.750125 AAATGATTTTTCTCAACTCTTAACCAC 57.250 29.630 0.00 0.00 0.00 4.16
760 829 9.248291 TGCAAATGATTTTTCTCAACTCTTAAC 57.752 29.630 0.00 0.00 0.00 2.01
761 830 9.814899 TTGCAAATGATTTTTCTCAACTCTTAA 57.185 25.926 0.00 0.00 0.00 1.85
763 832 8.721019 TTTGCAAATGATTTTTCTCAACTCTT 57.279 26.923 8.05 0.00 0.00 2.85
765 834 7.948363 CGATTTGCAAATGATTTTTCTCAACTC 59.052 33.333 28.67 8.59 0.00 3.01
767 836 7.786114 TCGATTTGCAAATGATTTTTCTCAAC 58.214 30.769 28.67 8.73 0.00 3.18
768 837 7.652909 ACTCGATTTGCAAATGATTTTTCTCAA 59.347 29.630 28.67 0.00 0.00 3.02
770 839 7.572502 ACTCGATTTGCAAATGATTTTTCTC 57.427 32.000 28.67 11.05 0.00 2.87
771 840 8.915654 GTTACTCGATTTGCAAATGATTTTTCT 58.084 29.630 28.67 2.32 0.00 2.52
772 841 8.162245 GGTTACTCGATTTGCAAATGATTTTTC 58.838 33.333 28.67 12.47 0.00 2.29
773 842 7.872483 AGGTTACTCGATTTGCAAATGATTTTT 59.128 29.630 28.67 3.95 0.00 1.94
774 843 7.378181 AGGTTACTCGATTTGCAAATGATTTT 58.622 30.769 28.67 11.37 0.00 1.82
817 886 1.886542 GCCTTCAGTTCGTTTCCCATT 59.113 47.619 0.00 0.00 0.00 3.16
818 887 1.202879 TGCCTTCAGTTCGTTTCCCAT 60.203 47.619 0.00 0.00 0.00 4.00
819 888 0.181587 TGCCTTCAGTTCGTTTCCCA 59.818 50.000 0.00 0.00 0.00 4.37
820 889 1.266989 CTTGCCTTCAGTTCGTTTCCC 59.733 52.381 0.00 0.00 0.00 3.97
821 890 1.266989 CCTTGCCTTCAGTTCGTTTCC 59.733 52.381 0.00 0.00 0.00 3.13
822 891 1.947456 ACCTTGCCTTCAGTTCGTTTC 59.053 47.619 0.00 0.00 0.00 2.78
825 894 2.104281 AGTTACCTTGCCTTCAGTTCGT 59.896 45.455 0.00 0.00 0.00 3.85
827 896 6.049790 CCTATAGTTACCTTGCCTTCAGTTC 58.950 44.000 0.00 0.00 0.00 3.01
830 899 4.409247 ACCCTATAGTTACCTTGCCTTCAG 59.591 45.833 0.00 0.00 0.00 3.02
842 911 0.956633 CTGCCGCGACCCTATAGTTA 59.043 55.000 8.23 0.00 0.00 2.24
846 915 1.045407 ATTTCTGCCGCGACCCTATA 58.955 50.000 8.23 0.00 0.00 1.31
854 923 2.924713 CGGTTAAATTTCTGCCGCG 58.075 52.632 12.74 0.00 35.90 6.46
962 1109 3.845259 GTGGATAGACGGCGCCCA 61.845 66.667 23.46 8.21 0.00 5.36
1239 1431 7.581213 ATGTTGGTCAATCTGTTTTGAGTTA 57.419 32.000 0.00 0.00 36.34 2.24
1298 1493 4.940483 AGCAGTGCTAGAGATCCCATATA 58.060 43.478 18.11 0.00 36.99 0.86
1300 1495 3.251016 AGCAGTGCTAGAGATCCCATA 57.749 47.619 18.11 0.00 36.99 2.74
1301 1496 2.100128 AGCAGTGCTAGAGATCCCAT 57.900 50.000 18.11 0.00 36.99 4.00
1302 1497 1.871418 AAGCAGTGCTAGAGATCCCA 58.129 50.000 20.09 0.00 38.25 4.37
1303 1498 2.998316 AAAGCAGTGCTAGAGATCCC 57.002 50.000 20.09 0.00 38.25 3.85
1426 1624 1.136529 CACAAACGATGACACGCTCTG 60.137 52.381 0.00 0.00 36.70 3.35
1432 1630 1.867233 AGAGCACACAAACGATGACAC 59.133 47.619 0.00 0.00 0.00 3.67
1459 1661 2.880890 GCTAGTCAATGGGGCATACAAG 59.119 50.000 0.00 0.00 0.00 3.16
1488 1690 3.953712 TCACCACACCTACATACAGTG 57.046 47.619 0.00 0.00 37.53 3.66
1617 1821 1.200948 GCTGATCTGCAGTTTGTTCCC 59.799 52.381 18.67 0.00 46.62 3.97
1638 1842 3.072330 TCAGACCATTCCTAGCAACACAA 59.928 43.478 0.00 0.00 0.00 3.33
1655 1859 9.827411 GATTTATTTTGTAACAGAACCTCAGAC 57.173 33.333 0.00 0.00 0.00 3.51
1776 1980 1.089920 CTCCAAAGAACCATCTGGCG 58.910 55.000 0.00 0.00 39.32 5.69
1822 2026 3.414700 CCTCGCGGCCGCATTATC 61.415 66.667 45.26 19.26 42.06 1.75
1914 2118 2.099756 GGCAAAGAAGCAAACACTCACT 59.900 45.455 0.00 0.00 35.83 3.41
2043 2247 5.056480 TGTATCAGTTGTCAGTGGAAACAG 58.944 41.667 10.29 4.10 44.46 3.16
2086 2290 4.517453 TCGTGAGGTTGGATTTACAAAAGG 59.483 41.667 0.00 0.00 31.17 3.11
2087 2291 5.682943 TCGTGAGGTTGGATTTACAAAAG 57.317 39.130 0.00 0.00 31.17 2.27
2108 2312 4.171754 GGCAAGAATCAAGCAGTTCAATC 58.828 43.478 0.00 0.00 0.00 2.67
2150 2356 3.114668 TGCTTTGCTGCATCAAATTGT 57.885 38.095 15.51 0.00 38.12 2.71
2162 2368 3.804759 GCTTTTCCCTCAATTGCTTTGCT 60.805 43.478 0.00 0.00 35.16 3.91
2186 2392 2.159043 ACATCATCAAGGTACCTCAGCG 60.159 50.000 16.64 4.94 0.00 5.18
2363 2569 2.546368 GGAAATATCAACATACCGCGCA 59.454 45.455 8.75 0.00 0.00 6.09
2442 2648 3.072944 GGAGCACCAGAGCATAATCATC 58.927 50.000 0.00 0.00 36.85 2.92
2907 3118 3.178046 TGTCCCTACCAGTTAGAATGCA 58.822 45.455 0.00 0.00 0.00 3.96
2908 3119 3.906720 TGTCCCTACCAGTTAGAATGC 57.093 47.619 0.00 0.00 0.00 3.56
3067 3281 1.199327 TCTTCGACTGTAGGAACGCAG 59.801 52.381 0.00 0.00 40.72 5.18
3084 3298 4.487714 TTCAGTGGTTCAGTTCAGTCTT 57.512 40.909 0.00 0.00 0.00 3.01
3242 3462 5.409520 TGAATCATGAGTGCTGAACTACAAC 59.590 40.000 0.00 0.00 40.07 3.32
3260 3480 6.939622 ACTAGTGTCTCACATGAATGAATCA 58.060 36.000 0.00 0.00 36.74 2.57
3284 3516 9.260002 GCAGGAGAAATCAAAAGACAAAATAAA 57.740 29.630 0.00 0.00 0.00 1.40
3285 3517 8.641541 AGCAGGAGAAATCAAAAGACAAAATAA 58.358 29.630 0.00 0.00 0.00 1.40
3286 3518 8.084073 CAGCAGGAGAAATCAAAAGACAAAATA 58.916 33.333 0.00 0.00 0.00 1.40
3287 3519 6.927381 CAGCAGGAGAAATCAAAAGACAAAAT 59.073 34.615 0.00 0.00 0.00 1.82
3288 3520 6.096705 TCAGCAGGAGAAATCAAAAGACAAAA 59.903 34.615 0.00 0.00 0.00 2.44
3289 3521 5.593909 TCAGCAGGAGAAATCAAAAGACAAA 59.406 36.000 0.00 0.00 0.00 2.83
3436 3668 5.140454 AGGAACAACTTAAACTGGAAGCAT 58.860 37.500 0.00 0.00 37.60 3.79
3780 4015 7.655521 TGAGCTAGCTTAGATGGTAACTAAA 57.344 36.000 20.42 0.00 37.61 1.85
4093 4342 6.261826 CAGATTCCAGAGAGAAACAGTGTTTT 59.738 38.462 21.70 11.94 0.00 2.43
4132 4388 4.457257 GCTGAAGTTAAAGCAGAGTCCAAT 59.543 41.667 5.38 0.00 39.31 3.16
4193 4449 6.999871 AGTTAAAACGAAGATTTGGAACCCTA 59.000 34.615 0.00 0.00 33.66 3.53
4233 4489 6.359804 ACCACAGCATCATAATGTGTAAGAT 58.640 36.000 4.10 0.00 42.17 2.40
4235 4491 7.734924 ATACCACAGCATCATAATGTGTAAG 57.265 36.000 4.10 0.00 42.17 2.34
4236 4492 7.468494 GCAATACCACAGCATCATAATGTGTAA 60.468 37.037 4.10 0.00 42.17 2.41
4306 4562 8.023021 AGAGAATAGTACCATATGCAACAAGA 57.977 34.615 0.00 0.00 0.00 3.02
4527 4785 2.168313 ACAAAAAGGGTGCAAGGAGTTG 59.832 45.455 0.00 0.00 36.67 3.16
4563 4821 8.529424 TCGGATATTAGAACTCAGAAGGTTTA 57.471 34.615 0.00 0.00 0.00 2.01
4718 4977 3.763897 ACCTTCGCCAAGCAAAGATTATT 59.236 39.130 0.00 0.00 0.00 1.40
4727 4986 1.377202 GATCCACCTTCGCCAAGCA 60.377 57.895 0.00 0.00 0.00 3.91
4747 5006 1.651987 CAGAACAGTCAACACACGGT 58.348 50.000 0.00 0.00 0.00 4.83
4749 5008 1.651987 ACCAGAACAGTCAACACACG 58.348 50.000 0.00 0.00 0.00 4.49
4930 5191 9.086336 CAAAACGGCAATGATAGACAAAAATAT 57.914 29.630 0.00 0.00 0.00 1.28
4932 5193 7.151308 TCAAAACGGCAATGATAGACAAAAAT 58.849 30.769 0.00 0.00 0.00 1.82
4963 5224 6.632834 GCGACTGAAATTACAATGCGATAAAT 59.367 34.615 0.00 0.00 0.00 1.40
4972 5233 6.801539 TTCTTCTGCGACTGAAATTACAAT 57.198 33.333 0.00 0.00 0.00 2.71
5033 5294 0.593128 CCAAGCAAACGAGGAACTGG 59.407 55.000 0.00 0.00 41.55 4.00
5034 5295 1.308998 ACCAAGCAAACGAGGAACTG 58.691 50.000 0.00 0.00 41.55 3.16
5066 5327 9.919348 CAATCAACAATTCACTTTGGTAAAAAG 57.081 29.630 0.00 0.00 0.00 2.27
5135 5396 5.763204 GTCCTCGCCATAAAATAGGAATTCA 59.237 40.000 7.93 0.00 38.06 2.57
5163 5424 1.276421 CACAGGAATGAAGTCCCGAGT 59.724 52.381 0.00 0.00 38.59 4.18
5417 5678 7.994539 TCCTCTATCTTCTCTGATCCTCATTA 58.005 38.462 0.00 0.00 0.00 1.90
5441 5702 5.186797 AGCTATGCCAGATAGTACCTTGATC 59.813 44.000 0.00 0.00 0.00 2.92
5562 5823 1.026718 CCCAATCTGCAAGGTCGGAC 61.027 60.000 0.00 0.00 0.00 4.79
5632 5893 7.173218 TCACATTCATTGACTTTAGAACCACTC 59.827 37.037 0.00 0.00 0.00 3.51
5819 6080 3.766591 TGAACCAAACACAAGTCCAACAT 59.233 39.130 0.00 0.00 0.00 2.71
5820 6081 3.157881 TGAACCAAACACAAGTCCAACA 58.842 40.909 0.00 0.00 0.00 3.33
5821 6082 3.769536 CTGAACCAAACACAAGTCCAAC 58.230 45.455 0.00 0.00 0.00 3.77
5822 6083 2.165437 GCTGAACCAAACACAAGTCCAA 59.835 45.455 0.00 0.00 0.00 3.53
5823 6084 1.748493 GCTGAACCAAACACAAGTCCA 59.252 47.619 0.00 0.00 0.00 4.02
5824 6085 2.024414 AGCTGAACCAAACACAAGTCC 58.976 47.619 0.00 0.00 0.00 3.85
5825 6086 3.128589 TCAAGCTGAACCAAACACAAGTC 59.871 43.478 0.00 0.00 0.00 3.01
5826 6087 3.088532 TCAAGCTGAACCAAACACAAGT 58.911 40.909 0.00 0.00 0.00 3.16
5885 6154 2.223805 GGTTTGCTGAAGACCACCTTTG 60.224 50.000 0.00 0.00 34.68 2.77
5886 6155 2.031870 GGTTTGCTGAAGACCACCTTT 58.968 47.619 0.00 0.00 34.68 3.11
5887 6156 1.064017 TGGTTTGCTGAAGACCACCTT 60.064 47.619 0.00 0.00 38.47 3.50
5888 6157 0.550914 TGGTTTGCTGAAGACCACCT 59.449 50.000 0.00 0.00 38.47 4.00
5889 6158 1.067060 GTTGGTTTGCTGAAGACCACC 59.933 52.381 0.00 0.00 42.77 4.61
5890 6159 2.024414 AGTTGGTTTGCTGAAGACCAC 58.976 47.619 0.00 0.00 42.77 4.16
5891 6160 2.435372 AGTTGGTTTGCTGAAGACCA 57.565 45.000 0.00 0.00 41.46 4.02
5917 6186 3.936203 TCCGCGTTGGACTTGCCT 61.936 61.111 4.92 0.00 43.74 4.75
5930 6199 0.107703 TGTCCATCTTGGTGATCCGC 60.108 55.000 0.00 0.00 39.03 5.54
5974 6243 1.691976 TCCATATCCACGGACATGTCC 59.308 52.381 31.59 31.59 46.18 4.02
5983 6254 2.232452 GTCTCCTCCATCCATATCCACG 59.768 54.545 0.00 0.00 0.00 4.94
5985 6256 2.529632 CGTCTCCTCCATCCATATCCA 58.470 52.381 0.00 0.00 0.00 3.41
5992 6263 2.105806 GATGGCCGTCTCCTCCATCC 62.106 65.000 18.25 0.00 46.49 3.51
5998 6270 2.670148 GGTTGGATGGCCGTCTCCT 61.670 63.158 24.11 0.00 36.79 3.69
6003 6275 2.185310 GACTCTGGTTGGATGGCCGT 62.185 60.000 0.00 0.00 36.79 5.68
6005 6277 0.678048 GTGACTCTGGTTGGATGGCC 60.678 60.000 0.00 0.00 0.00 5.36
6008 6280 2.566833 TTGGTGACTCTGGTTGGATG 57.433 50.000 0.00 0.00 0.00 3.51
6023 6295 1.914764 CCAAGGGCAGGCATTTGGT 60.915 57.895 16.96 0.00 36.25 3.67
6033 6305 2.224159 GGAGGACAGACCAAGGGCA 61.224 63.158 0.00 0.00 42.04 5.36
6036 6308 1.352083 TGAAGGAGGACAGACCAAGG 58.648 55.000 0.00 0.00 42.04 3.61
6038 6310 3.394274 TCAAATGAAGGAGGACAGACCAA 59.606 43.478 0.00 0.00 42.04 3.67
6044 6316 3.084039 GCATGTCAAATGAAGGAGGACA 58.916 45.455 0.00 0.00 42.07 4.02
6046 6318 3.438216 TGCATGTCAAATGAAGGAGGA 57.562 42.857 0.00 0.00 0.00 3.71
6053 6325 9.517868 TGGTATTGATATATGCATGTCAAATGA 57.482 29.630 20.47 11.12 43.06 2.57
6111 6383 7.424227 AATGATTTTTGTTTTGTGATCGCAT 57.576 28.000 10.29 0.00 0.00 4.73
6135 6407 8.279800 CGGATGTAAAAGCGTATTGAATATCAA 58.720 33.333 0.00 0.00 41.09 2.57
6136 6408 7.654116 TCGGATGTAAAAGCGTATTGAATATCA 59.346 33.333 0.00 0.00 0.00 2.15
6140 6412 5.815740 AGTCGGATGTAAAAGCGTATTGAAT 59.184 36.000 0.00 0.00 0.00 2.57
6150 6422 4.137116 TGGGATCAGTCGGATGTAAAAG 57.863 45.455 0.00 0.00 36.00 2.27
6151 6423 4.561500 TTGGGATCAGTCGGATGTAAAA 57.438 40.909 0.00 0.00 36.00 1.52
6157 6429 2.840651 AGACTTTTGGGATCAGTCGGAT 59.159 45.455 0.00 0.00 41.64 4.18
6161 6433 5.006386 ACAATCAGACTTTTGGGATCAGTC 58.994 41.667 0.00 0.00 37.76 3.51
6178 6450 1.811965 CGTCTTTGGCATGGACAATCA 59.188 47.619 16.58 0.00 27.33 2.57
6180 6452 0.527565 GCGTCTTTGGCATGGACAAT 59.472 50.000 16.58 0.00 27.33 2.71
6185 6457 2.361610 AGGGCGTCTTTGGCATGG 60.362 61.111 0.00 0.00 35.84 3.66
6186 6458 1.372087 GAGAGGGCGTCTTTGGCATG 61.372 60.000 11.50 0.00 34.71 4.06
6187 6459 1.078143 GAGAGGGCGTCTTTGGCAT 60.078 57.895 11.50 0.00 34.71 4.40
6217 6496 1.082756 GTGAAGTCTTTGCCACGCG 60.083 57.895 3.53 3.53 0.00 6.01
6218 6497 1.282875 GGTGAAGTCTTTGCCACGC 59.717 57.895 0.00 0.00 0.00 5.34
6228 6507 0.320508 GGGTGTCGAAGGGTGAAGTC 60.321 60.000 0.00 0.00 0.00 3.01
6258 6537 2.057137 AGGCTTGTTGAAGTGCTTCA 57.943 45.000 10.26 10.26 46.72 3.02
6259 6538 2.485814 CCTAGGCTTGTTGAAGTGCTTC 59.514 50.000 0.00 5.07 39.91 3.86
6276 6555 3.632604 TGACGAAGATTGTCCTAGCCTAG 59.367 47.826 0.00 0.00 35.46 3.02
6309 6595 7.950512 TGTTGTTTGTGAAGATGTTGGATTAT 58.049 30.769 0.00 0.00 0.00 1.28
6326 6612 5.009911 TCCAATGACTCCAAGATGTTGTTTG 59.990 40.000 1.49 0.00 30.95 2.93
6327 6613 5.139727 TCCAATGACTCCAAGATGTTGTTT 58.860 37.500 1.49 0.00 30.95 2.83
6333 6619 3.349927 TGCTTCCAATGACTCCAAGATG 58.650 45.455 0.00 0.00 0.00 2.90
6381 6685 5.437060 GGGTTTAGCAAGTTCATGGAGATA 58.563 41.667 0.00 0.00 0.00 1.98
6386 6690 2.807676 AGGGGTTTAGCAAGTTCATGG 58.192 47.619 0.00 0.00 0.00 3.66
6395 6699 0.037975 GACGACGAAGGGGTTTAGCA 60.038 55.000 0.00 0.00 0.00 3.49
6404 6708 1.269998 AGGAGTCAAAGACGACGAAGG 59.730 52.381 0.00 0.00 40.98 3.46
6433 6737 1.438651 GAGACATGTGTAAAGCGCCA 58.561 50.000 1.15 0.00 0.00 5.69
6441 6745 2.803956 ACGAAGGAGGAGACATGTGTA 58.196 47.619 1.15 0.00 0.00 2.90
6455 6759 5.178797 AGTTTGAGGTCATCATAACGAAGG 58.821 41.667 0.00 0.00 37.89 3.46
6456 6760 6.591834 AGAAGTTTGAGGTCATCATAACGAAG 59.408 38.462 0.00 0.00 37.89 3.79
6457 6761 6.464222 AGAAGTTTGAGGTCATCATAACGAA 58.536 36.000 0.00 0.00 37.89 3.85
6462 6766 4.466370 ACGGAGAAGTTTGAGGTCATCATA 59.534 41.667 0.00 0.00 37.89 2.15
6474 6778 6.090898 CGATAGACAAAATGACGGAGAAGTTT 59.909 38.462 0.00 0.00 39.76 2.66
6495 6799 0.755698 AGAAGCGAGAAGGGGCGATA 60.756 55.000 0.00 0.00 0.00 2.92
6496 6800 2.022240 GAGAAGCGAGAAGGGGCGAT 62.022 60.000 0.00 0.00 0.00 4.58
6497 6801 2.680352 AGAAGCGAGAAGGGGCGA 60.680 61.111 0.00 0.00 0.00 5.54
6510 6814 1.272807 TGGGAACGGGTAAGGAGAAG 58.727 55.000 0.00 0.00 0.00 2.85
6519 6823 1.364269 TAAGGTGATTGGGAACGGGT 58.636 50.000 0.00 0.00 0.00 5.28
6520 6824 2.729028 ATAAGGTGATTGGGAACGGG 57.271 50.000 0.00 0.00 0.00 5.28
6521 6825 4.134563 CCTAATAAGGTGATTGGGAACGG 58.865 47.826 0.00 0.00 39.24 4.44
6522 6826 3.564225 GCCTAATAAGGTGATTGGGAACG 59.436 47.826 3.00 0.00 45.64 3.95
6523 6827 4.532834 TGCCTAATAAGGTGATTGGGAAC 58.467 43.478 3.00 0.00 45.64 3.62
6524 6828 4.476846 TCTGCCTAATAAGGTGATTGGGAA 59.523 41.667 3.00 0.00 45.64 3.97
6525 6829 4.044308 TCTGCCTAATAAGGTGATTGGGA 58.956 43.478 3.00 0.00 45.64 4.37
6526 6830 4.392940 CTCTGCCTAATAAGGTGATTGGG 58.607 47.826 0.00 0.00 45.64 4.12
6527 6831 3.817647 GCTCTGCCTAATAAGGTGATTGG 59.182 47.826 0.00 0.00 45.64 3.16
6528 6832 4.454678 TGCTCTGCCTAATAAGGTGATTG 58.545 43.478 0.00 0.00 45.64 2.67
6529 6833 4.778213 TGCTCTGCCTAATAAGGTGATT 57.222 40.909 0.00 0.00 45.64 2.57
6530 6834 4.712476 CTTGCTCTGCCTAATAAGGTGAT 58.288 43.478 0.00 0.00 45.64 3.06
6531 6835 3.682718 GCTTGCTCTGCCTAATAAGGTGA 60.683 47.826 0.00 0.00 45.64 4.02
6532 6836 2.615912 GCTTGCTCTGCCTAATAAGGTG 59.384 50.000 0.00 0.00 45.64 4.00
6533 6837 2.422093 GGCTTGCTCTGCCTAATAAGGT 60.422 50.000 7.71 0.00 45.64 3.50
6534 6838 2.225467 GGCTTGCTCTGCCTAATAAGG 58.775 52.381 7.71 0.00 46.38 2.69
6537 6841 7.892641 CAAGAAGGGCTTGCTCTGCCTAATA 62.893 48.000 13.18 0.00 46.67 0.98
6540 6844 4.586017 CAAGAAGGGCTTGCTCTGCCTA 62.586 54.545 13.18 0.00 46.67 3.93
6541 6845 3.945278 CAAGAAGGGCTTGCTCTGCCT 62.945 57.143 13.18 0.00 46.67 4.75
6542 6846 1.593296 CAAGAAGGGCTTGCTCTGCC 61.593 60.000 0.00 6.64 46.67 4.85
6543 6847 1.881602 CAAGAAGGGCTTGCTCTGC 59.118 57.895 0.00 0.00 46.67 4.26
6550 6854 1.756538 CCAACAACACAAGAAGGGCTT 59.243 47.619 0.00 0.00 37.29 4.35
6551 6855 1.064017 TCCAACAACACAAGAAGGGCT 60.064 47.619 0.00 0.00 0.00 5.19
6552 6856 1.398692 TCCAACAACACAAGAAGGGC 58.601 50.000 0.00 0.00 0.00 5.19
6553 6857 3.221771 TGATCCAACAACACAAGAAGGG 58.778 45.455 0.00 0.00 0.00 3.95
6554 6858 4.520111 TGATGATCCAACAACACAAGAAGG 59.480 41.667 0.00 0.00 0.00 3.46
6555 6859 5.455392 GTGATGATCCAACAACACAAGAAG 58.545 41.667 0.00 0.00 41.14 2.85
6556 6860 4.278170 GGTGATGATCCAACAACACAAGAA 59.722 41.667 0.00 0.00 42.50 2.52
6557 6861 3.820467 GGTGATGATCCAACAACACAAGA 59.180 43.478 0.00 0.00 42.50 3.02
6558 6862 3.822735 AGGTGATGATCCAACAACACAAG 59.177 43.478 0.00 0.00 42.50 3.16
6559 6863 3.831323 AGGTGATGATCCAACAACACAA 58.169 40.909 0.00 0.00 42.50 3.33
6560 6864 3.507162 AGGTGATGATCCAACAACACA 57.493 42.857 0.00 0.00 42.50 3.72
6561 6865 6.150976 TGAATAAGGTGATGATCCAACAACAC 59.849 38.462 0.00 0.00 40.89 3.32
6562 6866 6.244654 TGAATAAGGTGATGATCCAACAACA 58.755 36.000 0.00 0.00 0.00 3.33
6563 6867 6.757897 TGAATAAGGTGATGATCCAACAAC 57.242 37.500 0.00 0.00 0.00 3.32
6564 6868 7.614974 TCAATGAATAAGGTGATGATCCAACAA 59.385 33.333 0.00 0.00 0.00 2.83
6565 6869 7.118060 TCAATGAATAAGGTGATGATCCAACA 58.882 34.615 0.00 0.00 0.00 3.33
6566 6870 7.572523 TCAATGAATAAGGTGATGATCCAAC 57.427 36.000 0.00 0.00 0.00 3.77
6567 6871 6.263842 GCTCAATGAATAAGGTGATGATCCAA 59.736 38.462 0.00 0.00 0.00 3.53
6568 6872 5.766670 GCTCAATGAATAAGGTGATGATCCA 59.233 40.000 0.00 0.00 0.00 3.41
6569 6873 5.766670 TGCTCAATGAATAAGGTGATGATCC 59.233 40.000 0.00 0.00 0.00 3.36
6570 6874 6.565435 CGTGCTCAATGAATAAGGTGATGATC 60.565 42.308 0.00 0.00 0.00 2.92
6571 6875 5.237996 CGTGCTCAATGAATAAGGTGATGAT 59.762 40.000 0.00 0.00 0.00 2.45
6572 6876 4.571984 CGTGCTCAATGAATAAGGTGATGA 59.428 41.667 0.00 0.00 0.00 2.92
6573 6877 4.571984 TCGTGCTCAATGAATAAGGTGATG 59.428 41.667 0.00 0.00 0.00 3.07
6574 6878 4.572389 GTCGTGCTCAATGAATAAGGTGAT 59.428 41.667 0.00 0.00 0.00 3.06
6575 6879 3.932710 GTCGTGCTCAATGAATAAGGTGA 59.067 43.478 0.00 0.00 0.00 4.02
6576 6880 3.242091 CGTCGTGCTCAATGAATAAGGTG 60.242 47.826 0.00 0.00 0.00 4.00
6577 6881 2.930040 CGTCGTGCTCAATGAATAAGGT 59.070 45.455 0.00 0.00 0.00 3.50
6578 6882 2.285220 CCGTCGTGCTCAATGAATAAGG 59.715 50.000 0.00 0.00 0.00 2.69
6579 6883 2.930040 ACCGTCGTGCTCAATGAATAAG 59.070 45.455 0.00 0.00 0.00 1.73
6580 6884 2.927477 GACCGTCGTGCTCAATGAATAA 59.073 45.455 0.00 0.00 0.00 1.40
6581 6885 2.165641 AGACCGTCGTGCTCAATGAATA 59.834 45.455 0.00 0.00 0.00 1.75
6582 6886 1.066858 AGACCGTCGTGCTCAATGAAT 60.067 47.619 0.00 0.00 0.00 2.57
6583 6887 0.317160 AGACCGTCGTGCTCAATGAA 59.683 50.000 0.00 0.00 0.00 2.57
6584 6888 0.317160 AAGACCGTCGTGCTCAATGA 59.683 50.000 0.00 0.00 0.00 2.57
6585 6889 0.439985 CAAGACCGTCGTGCTCAATG 59.560 55.000 1.35 0.00 0.00 2.82
6586 6890 0.317160 TCAAGACCGTCGTGCTCAAT 59.683 50.000 9.37 0.00 0.00 2.57
6587 6891 0.596600 GTCAAGACCGTCGTGCTCAA 60.597 55.000 9.37 0.00 0.00 3.02
6588 6892 1.007734 GTCAAGACCGTCGTGCTCA 60.008 57.895 9.37 0.00 0.00 4.26
6589 6893 2.081212 CGTCAAGACCGTCGTGCTC 61.081 63.158 9.37 4.95 0.00 4.26
6590 6894 2.050351 CGTCAAGACCGTCGTGCT 60.050 61.111 9.37 0.00 0.00 4.40
6591 6895 1.210545 TTTCGTCAAGACCGTCGTGC 61.211 55.000 9.37 4.66 0.00 5.34
6592 6896 1.385743 GATTTCGTCAAGACCGTCGTG 59.614 52.381 8.04 8.04 0.00 4.35
6593 6897 1.694639 GATTTCGTCAAGACCGTCGT 58.305 50.000 0.00 0.00 0.00 4.34
6594 6898 0.633733 CGATTTCGTCAAGACCGTCG 59.366 55.000 0.00 0.00 34.11 5.12
6595 6899 0.989890 CCGATTTCGTCAAGACCGTC 59.010 55.000 0.00 0.00 37.74 4.79
6596 6900 0.599558 TCCGATTTCGTCAAGACCGT 59.400 50.000 0.00 0.00 37.74 4.83
6597 6901 1.705256 TTCCGATTTCGTCAAGACCG 58.295 50.000 0.00 0.00 37.74 4.79
6598 6902 2.803956 TGTTTCCGATTTCGTCAAGACC 59.196 45.455 0.00 0.00 37.74 3.85
6599 6903 4.461992 TTGTTTCCGATTTCGTCAAGAC 57.538 40.909 0.00 0.00 37.74 3.01
6600 6904 4.024387 CCTTTGTTTCCGATTTCGTCAAGA 60.024 41.667 0.00 0.00 37.74 3.02
6601 6905 4.219033 CCTTTGTTTCCGATTTCGTCAAG 58.781 43.478 0.00 0.00 37.74 3.02
6602 6906 3.549221 GCCTTTGTTTCCGATTTCGTCAA 60.549 43.478 0.00 0.00 37.74 3.18
6603 6907 2.031508 GCCTTTGTTTCCGATTTCGTCA 60.032 45.455 0.00 0.00 37.74 4.35
6604 6908 2.031508 TGCCTTTGTTTCCGATTTCGTC 60.032 45.455 0.00 0.00 37.74 4.20
6605 6909 1.950909 TGCCTTTGTTTCCGATTTCGT 59.049 42.857 0.00 0.00 37.74 3.85
6606 6910 2.315901 GTGCCTTTGTTTCCGATTTCG 58.684 47.619 0.00 0.00 39.44 3.46
6607 6911 2.672714 GGTGCCTTTGTTTCCGATTTC 58.327 47.619 0.00 0.00 0.00 2.17
6608 6912 1.000717 CGGTGCCTTTGTTTCCGATTT 60.001 47.619 0.00 0.00 43.22 2.17
6609 6913 0.596082 CGGTGCCTTTGTTTCCGATT 59.404 50.000 0.00 0.00 43.22 3.34
6610 6914 1.862602 GCGGTGCCTTTGTTTCCGAT 61.863 55.000 6.09 0.00 43.22 4.18
6611 6915 2.548295 GCGGTGCCTTTGTTTCCGA 61.548 57.895 6.09 0.00 43.22 4.55
6612 6916 2.050442 GCGGTGCCTTTGTTTCCG 60.050 61.111 0.00 0.00 43.37 4.30
6613 6917 1.299850 GTGCGGTGCCTTTGTTTCC 60.300 57.895 0.00 0.00 0.00 3.13
6614 6918 0.179124 TTGTGCGGTGCCTTTGTTTC 60.179 50.000 0.00 0.00 0.00 2.78
6615 6919 0.463620 ATTGTGCGGTGCCTTTGTTT 59.536 45.000 0.00 0.00 0.00 2.83
6616 6920 1.269448 CTATTGTGCGGTGCCTTTGTT 59.731 47.619 0.00 0.00 0.00 2.83
6617 6921 0.881118 CTATTGTGCGGTGCCTTTGT 59.119 50.000 0.00 0.00 0.00 2.83
6618 6922 0.881118 ACTATTGTGCGGTGCCTTTG 59.119 50.000 0.00 0.00 0.00 2.77
6619 6923 1.165270 GACTATTGTGCGGTGCCTTT 58.835 50.000 0.00 0.00 0.00 3.11
6620 6924 0.676782 GGACTATTGTGCGGTGCCTT 60.677 55.000 0.00 0.00 0.00 4.35
6621 6925 1.078426 GGACTATTGTGCGGTGCCT 60.078 57.895 0.00 0.00 0.00 4.75
6622 6926 1.376683 TGGACTATTGTGCGGTGCC 60.377 57.895 0.00 0.00 37.34 5.01
6623 6927 1.644786 GGTGGACTATTGTGCGGTGC 61.645 60.000 0.00 0.00 37.34 5.01
6624 6928 0.321210 TGGTGGACTATTGTGCGGTG 60.321 55.000 0.00 0.00 37.34 4.94
6625 6929 0.321298 GTGGTGGACTATTGTGCGGT 60.321 55.000 0.00 0.00 37.34 5.68
6626 6930 0.321210 TGTGGTGGACTATTGTGCGG 60.321 55.000 0.00 0.00 37.34 5.69
6627 6931 1.737838 ATGTGGTGGACTATTGTGCG 58.262 50.000 0.00 0.00 37.34 5.34
6628 6932 4.142469 GGTAAATGTGGTGGACTATTGTGC 60.142 45.833 0.00 0.00 34.96 4.57
6629 6933 4.094294 CGGTAAATGTGGTGGACTATTGTG 59.906 45.833 0.00 0.00 0.00 3.33
6630 6934 4.020039 TCGGTAAATGTGGTGGACTATTGT 60.020 41.667 0.00 0.00 0.00 2.71
6631 6935 4.509616 TCGGTAAATGTGGTGGACTATTG 58.490 43.478 0.00 0.00 0.00 1.90
6632 6936 4.383770 CCTCGGTAAATGTGGTGGACTATT 60.384 45.833 0.00 0.00 0.00 1.73
6633 6937 3.134081 CCTCGGTAAATGTGGTGGACTAT 59.866 47.826 0.00 0.00 0.00 2.12
6634 6938 2.498481 CCTCGGTAAATGTGGTGGACTA 59.502 50.000 0.00 0.00 0.00 2.59
6635 6939 1.278127 CCTCGGTAAATGTGGTGGACT 59.722 52.381 0.00 0.00 0.00 3.85
6636 6940 1.734163 CCTCGGTAAATGTGGTGGAC 58.266 55.000 0.00 0.00 0.00 4.02
6637 6941 0.035820 GCCTCGGTAAATGTGGTGGA 60.036 55.000 0.00 0.00 0.00 4.02
6638 6942 0.322098 TGCCTCGGTAAATGTGGTGG 60.322 55.000 0.00 0.00 0.00 4.61
6639 6943 0.802494 GTGCCTCGGTAAATGTGGTG 59.198 55.000 0.00 0.00 0.00 4.17
6640 6944 0.690762 AGTGCCTCGGTAAATGTGGT 59.309 50.000 0.00 0.00 0.00 4.16
6641 6945 1.066143 AGAGTGCCTCGGTAAATGTGG 60.066 52.381 0.00 0.00 35.36 4.17
6642 6946 2.002586 CAGAGTGCCTCGGTAAATGTG 58.997 52.381 0.00 0.00 35.36 3.21
6643 6947 1.623811 ACAGAGTGCCTCGGTAAATGT 59.376 47.619 6.28 0.00 37.16 2.71
6644 6948 2.386661 ACAGAGTGCCTCGGTAAATG 57.613 50.000 6.28 0.00 37.16 2.32
6645 6949 2.567615 AGAACAGAGTGCCTCGGTAAAT 59.432 45.455 8.03 0.00 37.88 1.40
6646 6950 1.968493 AGAACAGAGTGCCTCGGTAAA 59.032 47.619 8.03 0.00 37.88 2.01
6647 6951 1.544691 GAGAACAGAGTGCCTCGGTAA 59.455 52.381 8.03 0.00 37.88 2.85
6648 6952 1.174783 GAGAACAGAGTGCCTCGGTA 58.825 55.000 8.03 0.00 37.88 4.02
6649 6953 0.827925 TGAGAACAGAGTGCCTCGGT 60.828 55.000 2.96 2.96 40.32 4.69
6650 6954 0.389166 GTGAGAACAGAGTGCCTCGG 60.389 60.000 1.87 1.87 35.36 4.63
6651 6955 0.600557 AGTGAGAACAGAGTGCCTCG 59.399 55.000 0.00 0.00 35.36 4.63
6652 6956 3.944055 TTAGTGAGAACAGAGTGCCTC 57.056 47.619 0.00 0.00 0.00 4.70
6653 6957 3.834813 TGATTAGTGAGAACAGAGTGCCT 59.165 43.478 0.00 0.00 0.00 4.75
6654 6958 4.193826 TGATTAGTGAGAACAGAGTGCC 57.806 45.455 0.00 0.00 0.00 5.01
6655 6959 4.502282 CGATGATTAGTGAGAACAGAGTGC 59.498 45.833 0.00 0.00 0.00 4.40
6656 6960 5.645624 ACGATGATTAGTGAGAACAGAGTG 58.354 41.667 0.00 0.00 0.00 3.51
6657 6961 5.416013 TGACGATGATTAGTGAGAACAGAGT 59.584 40.000 0.00 0.00 0.00 3.24
6658 6962 5.884771 TGACGATGATTAGTGAGAACAGAG 58.115 41.667 0.00 0.00 0.00 3.35
6659 6963 5.897377 TGACGATGATTAGTGAGAACAGA 57.103 39.130 0.00 0.00 0.00 3.41
6660 6964 5.289675 GGTTGACGATGATTAGTGAGAACAG 59.710 44.000 0.00 0.00 0.00 3.16
6661 6965 5.168569 GGTTGACGATGATTAGTGAGAACA 58.831 41.667 0.00 0.00 0.00 3.18
6662 6966 5.168569 TGGTTGACGATGATTAGTGAGAAC 58.831 41.667 0.00 0.00 0.00 3.01
6663 6967 5.400066 TGGTTGACGATGATTAGTGAGAA 57.600 39.130 0.00 0.00 0.00 2.87
6664 6968 5.351458 CATGGTTGACGATGATTAGTGAGA 58.649 41.667 0.42 0.00 34.54 3.27
6665 6969 4.025396 GCATGGTTGACGATGATTAGTGAG 60.025 45.833 9.86 0.00 34.54 3.51
6666 6970 3.871006 GCATGGTTGACGATGATTAGTGA 59.129 43.478 9.86 0.00 34.54 3.41
6667 6971 3.002656 GGCATGGTTGACGATGATTAGTG 59.997 47.826 9.86 0.00 34.54 2.74
6668 6972 3.206150 GGCATGGTTGACGATGATTAGT 58.794 45.455 9.86 0.00 34.54 2.24
6669 6973 3.205338 TGGCATGGTTGACGATGATTAG 58.795 45.455 9.86 0.00 34.54 1.73
6670 6974 3.274095 TGGCATGGTTGACGATGATTA 57.726 42.857 9.86 0.00 34.54 1.75
6671 6975 2.127271 TGGCATGGTTGACGATGATT 57.873 45.000 9.86 0.00 34.54 2.57
6672 6976 2.127271 TTGGCATGGTTGACGATGAT 57.873 45.000 9.86 0.00 34.54 2.45
6673 6977 1.902938 TTTGGCATGGTTGACGATGA 58.097 45.000 9.86 0.00 34.54 2.92
6674 6978 2.164017 TCATTTGGCATGGTTGACGATG 59.836 45.455 0.00 2.23 31.31 3.84
6675 6979 2.445427 TCATTTGGCATGGTTGACGAT 58.555 42.857 0.00 0.00 31.31 3.73
6676 6980 1.902938 TCATTTGGCATGGTTGACGA 58.097 45.000 0.00 0.00 31.31 4.20
6677 6981 2.327568 GTTCATTTGGCATGGTTGACG 58.672 47.619 0.00 0.00 31.31 4.35
6678 6982 2.327568 CGTTCATTTGGCATGGTTGAC 58.672 47.619 0.00 0.00 0.00 3.18
6679 6983 1.336702 GCGTTCATTTGGCATGGTTGA 60.337 47.619 0.00 0.00 0.00 3.18
6680 6984 1.070038 GCGTTCATTTGGCATGGTTG 58.930 50.000 0.00 0.00 0.00 3.77
6681 6985 0.037419 GGCGTTCATTTGGCATGGTT 60.037 50.000 0.00 0.00 0.00 3.67
6682 6986 1.184322 TGGCGTTCATTTGGCATGGT 61.184 50.000 0.00 0.00 35.55 3.55
6683 6987 1.590665 TGGCGTTCATTTGGCATGG 59.409 52.632 0.00 0.00 35.55 3.66
6686 6990 0.678395 AACATGGCGTTCATTTGGCA 59.322 45.000 0.00 0.00 45.22 4.92
6687 6991 1.070038 CAACATGGCGTTCATTTGGC 58.930 50.000 0.00 0.00 34.86 4.52
6688 6992 2.060284 CACAACATGGCGTTCATTTGG 58.940 47.619 0.00 2.59 34.86 3.28
6689 6993 1.456544 GCACAACATGGCGTTCATTTG 59.543 47.619 0.00 0.00 34.86 2.32
6690 6994 1.605202 GGCACAACATGGCGTTCATTT 60.605 47.619 0.00 0.00 45.10 2.32
6691 6995 0.038343 GGCACAACATGGCGTTCATT 60.038 50.000 0.00 0.00 45.10 2.57
6692 6996 1.586028 GGCACAACATGGCGTTCAT 59.414 52.632 0.00 0.00 45.10 2.57
6693 6997 3.038280 GGCACAACATGGCGTTCA 58.962 55.556 0.00 0.00 45.10 3.18
6699 7003 0.109179 CAATGTCGGGCACAACATGG 60.109 55.000 0.00 0.00 38.97 3.66
6700 7004 0.597568 ACAATGTCGGGCACAACATG 59.402 50.000 0.00 0.00 38.97 3.21
6701 7005 2.083774 CTACAATGTCGGGCACAACAT 58.916 47.619 0.00 0.00 38.97 2.71
6702 7006 1.202710 ACTACAATGTCGGGCACAACA 60.203 47.619 0.00 0.00 38.97 3.33
6703 7007 1.463444 GACTACAATGTCGGGCACAAC 59.537 52.381 0.00 0.00 38.97 3.32
6704 7008 1.803334 GACTACAATGTCGGGCACAA 58.197 50.000 0.00 0.00 38.97 3.33
6705 7009 3.525619 GACTACAATGTCGGGCACA 57.474 52.632 0.00 0.00 40.18 4.57
6712 7016 0.577269 GCGATGCCGACTACAATGTC 59.423 55.000 0.00 0.00 38.22 3.06
6713 7017 0.810031 GGCGATGCCGACTACAATGT 60.810 55.000 0.00 0.00 41.56 2.71
6714 7018 1.934463 GGCGATGCCGACTACAATG 59.066 57.895 0.00 0.00 41.56 2.82
6715 7019 4.438346 GGCGATGCCGACTACAAT 57.562 55.556 0.00 0.00 41.56 2.71
6731 7035 3.316573 GACAAGGAGGCCGACTGGG 62.317 68.421 8.70 5.01 39.58 4.45
6732 7036 2.266055 GACAAGGAGGCCGACTGG 59.734 66.667 0.00 0.00 38.77 4.00
6733 7037 2.266055 GGACAAGGAGGCCGACTG 59.734 66.667 0.00 0.00 34.00 3.51
6740 7044 1.987855 TAGGCCACGGACAAGGAGG 60.988 63.158 5.01 0.00 0.00 4.30
6741 7045 1.218316 GTAGGCCACGGACAAGGAG 59.782 63.158 5.01 0.00 0.00 3.69
6742 7046 1.534476 TGTAGGCCACGGACAAGGA 60.534 57.895 5.01 0.00 0.00 3.36
6743 7047 1.375523 GTGTAGGCCACGGACAAGG 60.376 63.158 5.01 0.00 33.61 3.61
6744 7048 4.278956 GTGTAGGCCACGGACAAG 57.721 61.111 5.01 0.00 33.61 3.16
6755 7059 1.940883 TAAGGCGGCGTGAGTGTAGG 61.941 60.000 9.37 0.00 0.00 3.18
6756 7060 0.108992 TTAAGGCGGCGTGAGTGTAG 60.109 55.000 9.37 0.00 0.00 2.74
6757 7061 0.533491 ATTAAGGCGGCGTGAGTGTA 59.467 50.000 9.37 0.00 0.00 2.90
6758 7062 0.739813 GATTAAGGCGGCGTGAGTGT 60.740 55.000 9.37 0.00 0.00 3.55
6759 7063 0.739462 TGATTAAGGCGGCGTGAGTG 60.739 55.000 9.37 0.00 0.00 3.51
6760 7064 0.739813 GTGATTAAGGCGGCGTGAGT 60.740 55.000 9.37 0.00 0.00 3.41
6761 7065 0.460284 AGTGATTAAGGCGGCGTGAG 60.460 55.000 9.37 0.00 0.00 3.51
6762 7066 0.036765 AAGTGATTAAGGCGGCGTGA 60.037 50.000 9.37 0.00 0.00 4.35
6763 7067 0.802494 AAAGTGATTAAGGCGGCGTG 59.198 50.000 9.37 0.00 0.00 5.34
6764 7068 0.802494 CAAAGTGATTAAGGCGGCGT 59.198 50.000 9.37 1.96 0.00 5.68
6765 7069 0.523335 GCAAAGTGATTAAGGCGGCG 60.523 55.000 0.51 0.51 0.00 6.46
6766 7070 0.811281 AGCAAAGTGATTAAGGCGGC 59.189 50.000 0.00 0.00 0.00 6.53
6767 7071 1.062587 CGAGCAAAGTGATTAAGGCGG 59.937 52.381 0.00 0.00 0.00 6.13
6768 7072 1.732259 ACGAGCAAAGTGATTAAGGCG 59.268 47.619 0.00 0.00 0.00 5.52
6769 7073 4.786609 GCATACGAGCAAAGTGATTAAGGC 60.787 45.833 0.00 0.00 0.00 4.35
6770 7074 4.332543 TGCATACGAGCAAAGTGATTAAGG 59.667 41.667 0.00 0.00 42.46 2.69
6771 7075 5.469373 TGCATACGAGCAAAGTGATTAAG 57.531 39.130 0.00 0.00 42.46 1.85
6782 7086 1.398041 GTGCTTGATTGCATACGAGCA 59.602 47.619 23.01 23.01 46.87 4.26
6783 7087 1.667724 AGTGCTTGATTGCATACGAGC 59.332 47.619 19.55 19.55 45.23 5.03
6784 7088 3.492383 CCTAGTGCTTGATTGCATACGAG 59.508 47.826 0.00 0.00 45.23 4.18
6785 7089 3.457234 CCTAGTGCTTGATTGCATACGA 58.543 45.455 0.00 0.00 45.23 3.43
6786 7090 2.032549 GCCTAGTGCTTGATTGCATACG 60.033 50.000 0.00 0.00 45.23 3.06
6787 7091 2.032549 CGCCTAGTGCTTGATTGCATAC 60.033 50.000 0.00 0.00 45.23 2.39
6788 7092 2.212652 CGCCTAGTGCTTGATTGCATA 58.787 47.619 0.00 0.00 45.23 3.14
6789 7093 1.019673 CGCCTAGTGCTTGATTGCAT 58.980 50.000 0.00 0.00 45.23 3.96
6790 7094 2.470156 CGCCTAGTGCTTGATTGCA 58.530 52.632 0.00 0.00 41.05 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.